sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ab6b2e503d808fc991f2dce62a085b0af549c2c225d7a284efa75bf0d1a5e0df | Java | 10,379 | 269 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9262fe18e72f95bd5baed660f5ef3977cf28f454819bc8d75944a7114e8a9ec7 | Java | 10,383 | 253 | /*******************************************************************************
* Copyright (c) 2015 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
4481e7dfdfc9ba6e8ef4a97f14c52ca924232f29fca10c29c3547db49962753c | Java | 10,438 | 381 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
3e8fb16b6a6ddbb9741aa3c4c8f591a7630d44d63e9c77557ba0735ada8f570b | Java | 10,458 | 295 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
833a336941756dad8fb5c352fe03fb6b634778fb3af2640e2293861bb5909963 | Java | 10,487 | 329 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
82d5773eea69b70e96365daa722b9067eba91ff2a40cbf90e6de983f9a49524a | Java | 10,551 | 492 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
17486689664d2f87ff86db2db2e58c58452255c48ea39a2604c9742be5cbed6f | Java | 10,634 | 327 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
707c00f16086dc4359a7f4a385bd5dd3123226321a52b9da7ddfa70a32a92195 | Java | 10,712 | 222 | /*******************************************************************************
* Copyright (c) 2017 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
c601b5da2ca5a49e1b5e3bad20d30abb9fefbe027dc89fde3732f3d9478a1d8c | Java | 10,794 | 325 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b6efd581b48b1eeadba9987c7818ee898f7570efa2e61ff1decc348257237291 | Java | 10,810 | 297 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b52d05c5065a4e5b0a8c662d9b95ff8a0175d097fb93daddf3964fade7d3418c | Java | 10,880 | 264 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
43169d6ac44c43bb8b93668fb8a250344604aa008d71605c230d86ca2705286c | Java | 10,915 | 300 | package org.micromanager.remote;
import java.util.HashMap;
import java.util.Set;
import java.util.concurrent.*;
import java.util.function.Consumer;
import mmcorej.TaggedImage;
import mmcorej.org.json.JSONObject;
import org.micromanager.acqj.main.AcqEngMetadata;
import org.micromanager.acqj.api.AcqEngJDataSink;
import... |
42199bf75de739d0a8be3a9ba717d10c76a0edb77990a6dc845e4d3d9acb468b | Java | 10,918 | 264 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2d8f2bd6ced386218cf7027992adae4b895c8d38339cda5f38ca783a0d779afd | Java | 11,076 | 321 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f4c4d6ae32d923788976e48ff8a94705ecae903eca516e3e1b9ff103d8b234d8 | Java | 11,177 | 334 | package jguis;
import jalgs.interpolation;
import jalgs.jdataio;
import jalgs.jsim.rngs;
import java.io.BufferedInputStream;
import java.io.BufferedOutputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
i... |
1e523b39cd73f886773816a4c0048e9bd751be17f31549b9170fcb989007b225 | Java | 11,195 | 289 | package com.arosbio.api;
import org.slf4j.Logger;
import com.arosbio.api.model.BadRequestError;
import com.arosbio.api.model.ClassificationResult;
import com.arosbio.api.model.ErrorResponse;
import com.arosbio.api.model.ModelInfo;
import com.arosbio.api.model.ServiceRunning;
import com.arosbio.impl.Predict;
import co... |
99ad205ce9c6b9b9ea1e5bfcbdebfafdf8bd38f5655473e1a26e56836c5b9bf1 | Java | 11,254 | 448 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f16040cbdc54cccd7afa00f66e7e9de7d643502624fc347dd8dfc467f631aee1 | Java | 11,277 | 373 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9aedb2ecbc213dd90f604c93176ad51ef86e7491715d3aaaab1aa17d3a380798 | Java | 11,285 | 350 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
d2f7c1c8c5079c3478c2fcd3c5c32a02c8702db3c40c3c48c93007db235a24d3 | Java | 11,435 | 371 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f9b02f97f98464614774855a05c67a370fd23d9439a85ab8e92b754f77b900c6 | Java | 11,483 | 249 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
75a58332004775c2a60832c5fdbcd7699debd1922283002d49e0217e91e744db | Java | 11,490 | 289 | package com.arosbio.api;
import org.slf4j.Logger;
import com.arosbio.api.model.BadRequestError;
import com.arosbio.api.model.ErrorResponse;
import com.arosbio.api.model.ModelInfo;
import com.arosbio.api.model.PredictionResult;
import com.arosbio.api.model.ServiceRunning;
import com.arosbio.impl.Predict;
import com.ar... |
94fee7f24448bc67a38132420b713aba0fdc4c1652b261c2361642e22bd6eab6 | Java | 11,690 | 355 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
d8f357a54aa8cd1bfc7d713ec9f59e8c46662c0464e4ce4409ee5c312a4e3c84 | Java | 11,705 | 290 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
3f95d6308aae83fffa4b23063bcacd021aa626694b1450b138af667b6d72b61a | Java | 11,714 | 356 | /**
* License: GPL
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License 2
* as published by the Free Software Foundation.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without eve... |
064ff311805269ca61abc457713f3b73008178acd21271036d00d6a355e97e37 | Java | 11,719 | 343 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c67c3aad6083cda7f1f932c2a6d2f6ccc8c82ad608ab94052b1333091f289303 | Java | 11,858 | 270 | import ij.*;
import ij.process.*;
import ij.gui.*;
import java.awt.Frame;
import ij.plugin.*;
import jalgs.*;
import jguis.*;
import jalgs.jfft.*;
public class stitch_stics_jru_v1 implements PlugIn, gui_interface {
public void run(String arg) {
//ImagePlus imp = IJ.getImage();
//int width=imp.getWid... |
6cb707d800d6337cb428f4c33887a74656c297e09cb26a30a9333ed34dbfa5dc | Java | 11,866 | 325 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
020fb1e4aa0abd728f56e47450bf5219c118f560da4a7f773cf49df2135cd6ee | Java | 11,940 | 412 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
1ed22ddc4f5ab67a623ddd7d38af533bc625b116cb47110f972654427ab805ef | Java | 11,972 | 291 | package com.example.fridgesnap;
import static android.content.ContentValues.TAG;
import androidx.appcompat.app.AlertDialog;
import androidx.appcompat.app.AppCompatActivity;
import org.tensorflow.lite.*;
import com.example.fridgesnap.ml.Model;
import androidx.camera.core.Camera;
import androidx.camera.core.Image... |
2dde4aaf0cef743463d2fd2da997b2257ae1dc3e9b2aae2cd4c4507593bfcf92 | Java | 12,006 | 383 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
cb0f5c54af0e02521977014316d05de77c46b1f24522e8f4a0751b158e7745f7 | Java | 12,047 | 281 | import ij.*;
import ij.process.*;
import ij.gui.*;
import java.awt.Frame;
import ij.plugin.*;
import jalgs.*;
import jguis.*;
public class jay_stitching_plugin_jru_v1 implements PlugIn, gui_interface {
public void run(String arg) {
//ImagePlus imp = IJ.getImage();
//int width=imp.getWidth(); int heig... |
dd754f3277849d4b810023762067da1b42c7f9aefb9595422068de411c005eb0 | Java | 12,104 | 310 | import ij.*;
import ij.process.*;
import ij.gui.*;
import ij.plugin.*;
import ij.io.OpenDialog;
import Jama.Matrix;
import java.io.*;
import java.util.ArrayList;
import java.util.List;
import javax.swing.*;
import java.awt.*;
import java.awt.event.*;
public class Linear_unmixing_QDye implements PlugIn {... |
b202486a5657c8582a2d20d69658131a7e310b8e067a46e2bb4093f02e5d1136 | Java | 12,112 | 273 | package jguis;
import ij.IJ;
import j3D.element3D;
import j3D.line3D;
import j3D.renderer;
import java.io.BufferedReader;
import java.io.FileReader;
import java.io.IOException;
import org.jocl.*;
import jalgs.*;
public class opencl_maxproj{
boolean valid=false;
public int slices,projtype,newsize... |
2670a0f7dab5ea1a80d0fcdd7589e62d29b4d4b7b28c8b7ed88cf8d8263db114 | Java | 12,130 | 308 | package com.arosbio.api;
import org.slf4j.Logger;
import com.arosbio.api.model.BadRequestError;
import com.arosbio.api.model.ErrorResponse;
import com.arosbio.api.model.ModelInfo;
import com.arosbio.api.model.RegressionResult;
import com.arosbio.api.model.ServiceRunning;
import com.arosbio.impl.Predict;
import com.ar... |
e80b87aa5c2401a0f6b494bac07270f3377e2950f8b00256aaea0496de438ca5 | Java | 12,148 | 348 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
7b1b52264780d42c69ab6e69e0d71ea88419c764fd65abbe6a851ba7dd30919d | Java | 12,213 | 461 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
837b8fcfddb28c776ee5577b9ba720e6868dffda6b15127de4b4783af105d2dc | Java | 12,256 | 259 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
3c266452180e2155d2ad16313c2ac8db0bfc0501c423879740663afaf9f5fec7 | Java | 12,444 | 386 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2ec538fb0901078d57daa947b5523b6edf57fa4a9e1aacdf615f6fe4b50f01b2 | Java | 12,486 | 373 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
ce5d2637204de8ae6690ed4cae3d1f73efe247e9b48b0d44bc6915e62d9608f6 | Java | 12,502 | 407 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
06e559ac516d0630fce05f4ab1bd3bcf0432cf2f3763010fc014e0ccedd92f3e | Java | 12,625 | 317 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
82d51ed7b55d25cd7dd60fac59f816eebb80d7d2b4a27e2468a6f27e13cd55c1 | Java | 12,704 | 277 | /*******************************************************************************
* Copyright (c) 2018 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
63e0a458e79669f4cc5f8a5544c6d7fe3ca1eb47feb1fc615f990438536a49ca | Java | 12,749 | 482 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
76332ae85299f150cb36918262e03c1558a3f7eb37c5eee640064db3dd3405f9 | Java | 12,796 | 297 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
4ff1b45b1f7262b9ad45c418c01a1eea18ccfaa698669c0e388c81b600d090b7 | Java | 12,837 | 326 | /*******************************************************************************
* Copyright (c) 2014 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
476cb31ae9d42ba5bca7a0c1076bba37492dab6d9145b3a442d2efec75b603dd | Java | 12,870 | 312 | package jguis;
import java.awt.Color;
import java.awt.Graphics;
import java.awt.Graphics2D;
import java.awt.Image;
import java.awt.Rectangle;
import ij.IJ;
import ij.ImagePlus;
import ij.Prefs;
import ij.gui.ImageCanvas;
import ij.gui.Overlay;
import ij.gui.Roi;
import ij.process.ColorProcessor;
import... |
4f35c1bd393d5a73c85e32988b7c2d39444be1f6289330e710255124c5e22c19 | Java | 13,174 | 266 | /*******************************************************************************
* Copyright (c) 2016 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
1ccdc884642ddd792ab0741a31fe62a9b569e0c8bd71418c4815eafe36c0b86c | Java | 13,219 | 359 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
010544515a730e1dc321862a9bc0354f29444ef8d956bc28d6c982b6f5c7ce81 | Java | 13,440 | 306 | package org.micromanager.lightsheet;
import java.util.concurrent.BlockingQueue;
import mmcorej.TaggedImage;
import mmcorej.org.json.JSONException;
import mmcorej.org.json.JSONObject;
import org.micromanager.acqj.main.AcqEngMetadata;
import org.micromanager.acqj.util.ImageProcessorBase;
import java.util.ArrayList;
imp... |
597964616b4c41c66418f38a629589f1d0b2e51eea1bafef207322ac38c3c2da | Java | 13,493 | 314 | //package org.micromanager.lightsheet;
//
//
//import mmcorej.TaggedImage;
//import mmcorej.org.json.JSONException;
//import mmcorej.org.json.JSONObject;
//import org.micromanager.acqj.main.AcqEngMetadata;
//
//import java.util.ArrayList;
//import java.util.Collections;
//import java.util.concurrent.LinkedBlockingDeque... |
01896d816e6a76099d24c99d2e41df96aee0f41120d956cdfcb9d0d4e16aa235 | Java | 13,546 | 394 | package astar;
import java.util.*;
import astar.Category.Slash;
public abstract class Combinator {
public enum RuleType {
FA, BA, FC, BX, GFC, GBX, CONJ_BOTTOM, CONJ_TOP, RP, LP, NOISE, UNARY, LEXICON
}
private Combinator(RuleType ruleType) {
this.ruleType = ruleType;
}
static c... |
15a6cf172eb488299b2289eaa71a5f4812efd13efa8e13605acef2c0e0afd503 | Java | 14,021 | 509 | package astar;
import java.util.*;
import java.util.concurrent.ConcurrentHashMap;
import java.util.concurrent.atomic.AtomicInteger;
public abstract class Category {
private final String asString;
private final int id;
private final static String WILDCARD_FEATURE = "X";
private final static Set<String>... |
1496b9edf62aead8993aad6649406c2ad2cbe23a61bf1df051f90f24334c3a92 | Java | 14,087 | 358 | package jalgs.jseq;
import jalgs.table_tools2;
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
public class GeneMapper{
/******************
* here we map gene alignments from a sam file to... |
4fc95a410aeb4e9194893084e88f1328d1e8f227e6c6197b17a0123d1c1476da | Java | 14,364 | 418 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
598e24fc226a49d7d0a06555996de6e64d65995b83f314246c55542662bbcbde | Java | 15,131 | 297 | /*******************************************************************************
* Copyright (c) 2017 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
d0c47989b78ece8c5545b775313aee1a545948292c79d545e89c817027d122cf | Java | 15,163 | 513 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
812e28e920ee9957e9775cabd608bd4eee710dd7303e82c1eaac5338ecbd7a35 | Java | 15,293 | 471 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
29c9a52874bfe27f9e5ca2241b878b735cd2ca05c6df4e37e21f7ff7ec006ebc | Java | 15,317 | 353 | /*******************************************************************************
* Copyright (c) 2014 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
a35cae6c9033f548cf3fcbf490a53531182d4ee2e2d71d46d0ace52dcd65c9c4 | Java | 15,321 | 356 | package astar;
import java.util.*;
import java.util.concurrent.ConcurrentHashMap;
import astar.Combinator.RuleProduction;
import astar.Combinator.RuleType;
import astar.SyntaxTreeNode.SyntaxTreeNodeFactory;
import astar.SyntaxTreeNode.SyntaxTreeNodeLeaf;
public class AStar {
public AStar(List<String> validRootC... |
90f0ed32d126d1889461f5823b10cd43fe36f5717df93dab1fc17bc830fba825 | Java | 15,369 | 418 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this dis... |
7977159d53b298f32cbfd0390eb1bc1b8b1838f148ce9295b70c2f08dae6789c | Java | 15,433 | 407 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
d003ddb40ad73ee0cea2b55ada8d7d7b45c185beac7d0ee8cc21d6d9a5242b02 | Java | 15,474 | 522 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
4eb50b08879615f1cf3c35dc589dba734166fbc15bb1697cae44d64948a046cd | Java | 15,485 | 417 | ///////////////////////////////////////////////////////////////////////////////
// AUTHOR: Henry Pinkard, henry.pinkard@gmail.com
//
// COPYRIGHT: University of California, San Francisco, 2015
//
// LICENSE: This file is distributed under the BSD license.
// License text is included with the... |
7b9ba5d3baf28e2a813cdc7774adce1ff06583fd2d1fab1701c91b8261432b0d | Java | 15,487 | 449 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c228ee6093aed56cbe0b4bfe139f5c9f896658b53aa96bacef6bce5adbcd84dd | Java | 15,855 | 536 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
6c647f33298d3acec0e5ad3330d3905660c5e0603faaa51b355ece9d4a89198a | Java | 15,891 | 572 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
af37c66dbfcbb65287509aa2293524bb669bec62dc1674caa5db899641acdcaa | Java | 16,102 | 430 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
ebf8d45593883d398f5a890da5cacff65bea8947962ca7934bfbf44b4af6861b | Java | 16,161 | 388 | package jalgs.jseg;
import java.util.ArrayList;
import java.util.List;
import jalgs.algutils;
public class FindBlobsFast{
//this class attempts to subdivide an image into multiple parts and find each set of blobs independently
//then combine the sets together by reconciling the edges
//this should save ... |
5de85fb1dc5d4e3e171abaf68ffbfcd0a974d813e20ddf935ea5c42450eb831f | Java | 16,316 | 582 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
afd54116a0274228493703d72a3fc898517b2c23cbbd9d03160f022286674880 | Java | 16,408 | 497 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
2d4121f4bcb1fec9a4d0110948c6ae6d5af4ac0c6ab4c4fe0494bb6df81a7247 | Java | 16,715 | 416 | package jguis;
import org.freehep.graphics2d.*;
import org.freehep.graphicsio.emf.*;
import ij.gui.*;
import java.awt.*;
import java.awt.geom.*;
import java.io.*;
import java.text.DecimalFormat;
public class emf_converter {
private static float magnification,magratio;
public static int currx,curry;... |
3aa0c6a5987becec1ff500f5f5b15f953309e1d5514eb18a76bb611cf9008f97 | Java | 16,914 | 410 | package jguis;
import java.awt.geom.AffineTransform;
import java.util.ArrayList;
import java.util.List;
import java.util.Vector;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;
import ij.IJ;
import ij.ImagePlus;
import ij.ImageStack;
import ij.process.ImageProcessor;
i... |
ce4b7e67f08c6d10a046d6e2defb0fe7ba4bcfcca70c22e2e088fc3bbd3b440e | Java | 17,510 | 438 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
8e2018d36d1d8d24f85ff2aa4544c58e2741924eba45be6d7c63c8f6e33964c9 | Java | 17,545 | 524 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
3a15fc2caeef090428622bbb005a50e2f13edc4b33de42d4cf33cbcf033ccaf3 | Java | 17,770 | 613 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
616f88d83ffb819a0105e73dab4b915049a5840582797ddb463cec5643531ccf | Java | 18,015 | 612 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
68af9c7abcf739d2cf8a546437eb046bc795c67c2a110a4c0f567e4e4cb63584 | Java | 18,137 | 469 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
5fbb68a2941803ef327edbfecb4f82c7639f61ce7b94c30e7ed07260efab6caf | Java | 18,227 | 667 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
1cbd23f77e786d40698f7c58618f9f68385cb04ca1b149468dbc8160827dc350 | Java | 18,229 | 628 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
f028f2c349f04724c8e765700fec9291877e49241a9d8624158468668500bec6 | Java | 18,395 | 620 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9b3964e32af531d12f645e6d92247becd0c9485b7c66ea4f926bd59c930e1f37 | Java | 18,698 | 653 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
87f397f3d5d8aa85ac2c3f9af0ff467d982235986c1cd807dda10e8e3b801a73 | Java | 18,723 | 596 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
d6b5c8e24fb2da1d7d8332608e25d8a9a6ef9fe892506947e14651f811021edc | Java | 18,766 | 511 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
fb02d9b4f4c0c41b306fbf7701d2f802049d932f7dbe74d6d37eb85a96881f33 | Java | 18,810 | 438 | package jguis;
import jalgs.algutils;
import jalgs.jstatistics;
import jalgs.stitching;
import java.awt.Rectangle;
import mpicbg.stitching.PairWiseStitchingImgLib;
import mpicbg.stitching.PairWiseStitchingResult;
import mpicbg.stitching.StitchingParameters;
import ij.IJ;
import ij.ImagePlus;
import ij... |
e3d3c74e0a808b7ed75f85c83855df6cb375f76b8114d0573c7555a5c0fa4ca8 | Java | 19,207 | 692 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
9b1f73aa10f19b9e3341b83d2da7d532f200a92bf1d9ac59a8b36c9fb9c5182b | Java | 19,223 | 453 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c312aee6915d0f910f2b3d9f6aefc84468dc5ea41ab546abfe0063b5ac0b3b61 | Java | 19,786 | 604 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
39e0db200d49e73add960e7bd0f5bc295db3b94b949bad390f0552bee592e114 | Java | 20,238 | 719 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
301b001292f0cd257c8bee935fc47ce9231a2067874dc06d44cb3242010ff106 | Java | 20,285 | 698 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
7d10aad5e4a9a36e11999c51fcefaecd56c97ef59a5fa41187fef1ebabbe699b | Java | 21,051 | 710 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
006a58c6fa32dcfcab23b65e76392a003725091aaec1bfe0d99e5b9dad703277 | Java | 21,149 | 664 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
c36f548433b1e8e7885e6fb0da323bc5125aab428ca209d781aa24d8c59bd824 | Java | 22,668 | 583 | ///////////////////////////////////////////////////////////////////////////////
//FILE: MMImageCache.java
//PROJECT: Micro-Manager
//SUBSYSTEM: mmstudio
//-----------------------------------------------------------------------------
//
// AUTHOR: Arthur Edelstein
// COPYRIGHT: University of ... |
cf34f1ba31d2a244a6753dfde3cc7061e42ff8a947cd444a1e5ea11dc01f6a5d | Java | 22,990 | 403 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
4a4abead473ce444a3c9fa8197b45367590f500ca69f46ea4fe9e79c30f5cc05 | Java | 23,147 | 771 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
b418473a4118015b291a5c592f9acceab6aa69d8713101f2d27b8aa55d222499 | Java | 23,220 | 642 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
722a00d86e250df397c8bdaabc59236d8200df82cbd14ba2d3bcb085afa0e25c | Java | 23,257 | 494 | /*******************************************************************************
* Copyright (c) 2014 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
e7a88180bc891e515d7b4b1d745a4648c4b85b5578fc902d7ff206bfb17e5774 | Java | 23,801 | 613 | /*******************************************************************************
* Copyright (c) 2012 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
1f9a42dc957dafd672b64f1d526f291d4d99ce6f4ccd7ad59bb7122c53fad752 | Java | 24,173 | 753 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
062e63205942f2c46bf10fd0cd3c5bc07b29078cd16da7a4787ed42c71540dfa | Java | 24,496 | 750 | /*******************************************************************************
* Copyright (c) 2013 Jay Unruh, Stowers Institute for Medical Research.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the GNU Public License v2.0
* which accompanies this... |
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