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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kubeflow/katib repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, based on tha...
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#! /bin/bash NUM_EPOCHS=25 LABEL="UNet_Final_v2" SLURM_DIR="slurm" BASE_SCRIPT="base.slurm" # first job for epoch 1 # create the slurm file cp $SLURM_DIR/$BASE_SCRIPT $SLURM_DIR/epoch1.slurm sed -i "s/LABEL_ARG/--label ${LABEL}_epoch1/" $SLURM_DIR/epoch1.slurm sed -i "s/PREV_MODEL_ARG//" $SLURM_DIR/epoch1.slurm sed ...
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#!/usr/bin/env bash # Copyright 2012 Johns Hopkins University (Author: Yenda Trmal) # Apache 2.0. echo "$0 $@" 1>&2 # Print the command line for logging [ -f ./path.sh ] && . ./path.sh; # source the path. . parse_options.sh || exit 1; help_message="$0: generates an subset ecf file for spoken term detection evaluat...
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#!/usr/bin/env bash dir=exp/tri6_nnet train_stage=-10 realign_epochs="6 10" . conf/common_vars.sh . ./lang.conf # This parameter will be used when the training dies at a certain point. train_stage=-100 . ./utils/parse_options.sh dir=${dir}_realign$(echo $realign_epochs | tr ' ' '_') set -e set -o pipefail set -u # ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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ml Java ml plink ml Python/2.7.12-foss-2015b dsname=$1 dsdir=$2 snpmapref=/groups/umcg-biogen/tmp03/annotation/GiantSNPMappings_Filtered_on_Maf0.001_Indels.txt.gz kgbim=/groups/umcg-biogen/tmp03/annotation/1kgp3v5a/ALL-merged.bim kgpedmap=/groups/umcg-biogen/tmp03/annotation/1kgp3v5a/ALL-merged vcfutils=/groups/umc...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # if [ -f path.sh ]; then . ./path.sh; fi mkdir -p data/lang_test arpa_lm=data/local/lm/3gram-mincount/lm_unpruned.gz [ ! -f $arpa_lm ] && echo No such file $arpa_lm && exit 1; cp -rT data/lang data/lang_test gunzip -c "$arpa_lm" | \ arpa2fst --disambig-symbol=#0 \ --read-symbol-...
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#!/bin/bash -u # Copyright 2015 (c) Johns Hopkins University (Jan Trmal <jtrmal@gmail.com>) # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # #...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright(C) 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable ...
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#! /bin/bash # Copyright 2016 Vimal Manohar # Apache 2.0. # This script prepares the 1995 CSR-IV HUB4 corpus # https://catalog.ldc.upenn.edu/LDC96S31 set -e set -o pipefail set -u if [ $# -ne 2 ]; then echo "Usage: $0 <SOURCE-DIR> <dir>" echo " e.g.: $0 /export/corpora5/LDC/LDC96S31/csr95_hub4 data/local/data/...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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stage=0 train_stage=-10 mic=ihm affix=bidirectional common_egs_dir= remove_egs=true use_ihm_ali=false train_set=train_cleaned ihm_gmm=tri3 nnet3_affix=_cleaned # BLSTM params cell_dim=512 rp_dim=128 nrp_dim=128 chunk_left_context=40 chunk_right_context=40 # training options srand=0 num_jobs_initial=2 num_jobs_final=1...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #SBATCH --job-name=qcfc #SBATCH --time=100:00:00 #SBATCH --nodes=1 #SBATCH --ntasks=1 #SBATCH --cpus-per-task=8 #SBATCH --mem-per-cpu=2gb #SBATCH --account=iacc_nbc #SBATCH --qos=pq_nbc #SBATCH --partition=IB_16C_96G # Outputs ---------------------------------- #SBATCH --output=/home/data/abcd/abcd-hispanic...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kubeflow/pipelines repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, based on...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Report WER for reports and conversational # Copyright 2014 QCRI (author: Ahmed Ali) # Apache 2.0 if [ $# -ne 1 ]; then echo "Arguments should be the gale folder, see ../run.sh for example." exit 1; fi [ -f ./path.sh ] && . ./path.sh set -o pipefail -e galeFolder=$(utils/make_absolute.sh...
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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kubeflow/kfp-tekton repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, based o...
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#!/bin/bash exe="../../../build/hcbr_learning" paramFile="hcbr.status" seed=$5 # Run number runNb=0 if [ -f "./results/hcbr/runNumber" ]; then runNb=`cat ./results/hcbr/runNumber` runNb=$((runNb+1)) fi echo "$runNb" > ./results/hcbr/runNumber resDir="./results/hcbr/run$runNb" for i in `seq 6 10` #Paramet...
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#!/bin/bash #SBATCH --job-name=DECON_EXPR_PREPROCESS_AFR_NOENA #SBATCH --output=/groups/umcg-biogen/tmp01/output/2019-11-06-FreezeTwoDotOne/2020-10-12-deconvolution/deconvolution/preprocess_scripts/pre_process_decon_expression_matrix/jobs/DECON_EXPR_PREPROCESS_AFR_NOENA.out #SBATCH --error=/groups/umcg-biogen/tmp01/out...
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# This is as arpa2G.sh but specialized for the per-syllable setup. This is # specific to the BABEL setup. # The difference from arpa2G.sh is that (1) we have to change <unk> to <oov>, because # <oov> is the name of the phone that was chosen to represent the unknown word [note: # <unk> is special to SRILM, which is why...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # this script is used for comparing decoding results between systems. # e.g. local/chain/compare_wer.sh exp/chain/cnn{1a,1b} # Copyright 2017 Chun Chieh Chang # 2017 Ashish Arora if [ $# == 0 ]; then echo "Usage: $0: <dir1> [<dir2> ... ]" echo "e.g.: $0 exp/chain/cnn{1a,...
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#!/bin/bash # Copyright 2020-2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable...
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#!/usr/bin/env bash # Verify a new publisher/subscriber: build LibCarla with ROS 2 and run the # LibCarla test suite (test_ros2_middleware.cpp exercises the middleware layer # with a fake middleware; test_type_hash.cpp guards the type registrations). # # A publisher that only exists in LibCarla is NOT proven by this: t...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2012 Microsoft Corporation Johns Hopkins University (Author: Daniel Povey) # 2015 Guoguo Chen # 2016 Mitsubishi Electric Research Laboratories (Author: Shinji Watanabe) # Apache 2.0 # This script takes data prepared in a corpus-dependent way # in data/local/, an...
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#!/bin/bash # # Copyright 2021 The Kubeflow Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law o...
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#! /bin/bash # Copyright 2016 Vimal Manohar # Apache 2.0. # This script prepares 1997 HUB4 English Evaluation corpus # https://catalog.ldc.upenn.edu/LDC2002S11 set -e set -o pipefail if [ $# -ne 2 ]; then echo "Usage: $0 <SOURCE-DIR> <dir>" echo "$0 /export/corpora/LDC/LDC2002S11/hub4e_97 data/local/data/eval9...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2015-2016 Sarah Flora Juan # Copyright 2016 Johns Hopkins University (Author: Yenda Trmal) # Apache 2.0 set -e -o pipefail # To create G.fst from ARPA language model . ./path.sh || die "path.sh expected"; local/train_lms_srilm.sh --train-text data/train/text data/ data/srilm #nl -n...
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#!/bin/bash #SBATCH --job-name=DECON_EXPR_PREPROCESS_EUR_NOENA_NOGVEX #SBATCH --output=/groups/umcg-biogen/tmp01/output/2019-11-06-FreezeTwoDotOne/2020-10-12-deconvolution/deconvolution/preprocess_scripts/pre_process_decon_expression_matrix/jobs/DECON_EXPR_PREPROCESS_EUR_NOENA_NOGVEX.out #SBATCH --error=/groups/umcg-bi...
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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kubeflow/training-operator repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, ...
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#!/usr/bin/env bash # Copyright Johns Hopkins University (Authors: Daniel Povey, Sanjeev Khudanpur) 2012-2013. Apache 2.0. # begin configuration section. cmd=run.pl stage=0 cer=0 decode_mbr=true min_lmwt=7 max_lmwt=17 model= beam=7 word_ins_penalty=0.5 #end configuration section. echo "$0 $@" set -e set -o pipefai...
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#!/bin/bash TRAVIS_PYTHON_VERSION=$1 TESTMODE=$2 uname -a free -m df -h ulimit -a sudo apt-get update -qq sudo apt-get install -qq libatlas-dev libatlas-base-dev liblapack-dev gfortran sudo cp /usr/lib/x86_64-linux-gnu/libm.so /usr/lib/x86_64-linux-gnu/libm.so.6 if [[ "$TRAVIS_PYTHON_VERSION" == "py27" ]]; then wge...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2020-2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable...
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#!/bin/bash # terminate script die() { echo "$1" >&2 echo exit 1 } test(){ testdir=$1 echo "Test for $testdir" echo "" echo "testing with iop options" if [ $testdir = test/ecoli_2kb_region ]; then ./f5c index -d $testdir/fast5_files $testdir/reads.fasta mv $testdir/reads.fas...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2020-2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable...
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#!/usr/bin/env bash # Copyright 2012 Microsoft Corporation Johns Hopkins University (Author: Daniel Povey) # Apache 2.0 # This script takes data prepared in a corpus-dependent way # in data/local/, and converts it into the "canonical" form, # in various subdirectories of data/, e.g. data/lang, data/lang_test_ug, # ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2018 AIShell-Foundation(Authors:Jiayu DU, Xingyu NA, Bengu WU, Hao ZHENG) # 2018 Beijing Shell Shell Tech. Co. Ltd. (Author: Hui BU) # Apache 2.0 # This is a shell script, and it download and process DaCiDian for Mandarin ASR. . ./path.sh download_dir=data/local/DaCiDian dir...
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#! /bin/bash # Copyright 2016 Vimal Manohar # Apache 2.0. # This script prepares 1998 HUB4 Broadcast News Evaluation English Test Material # https://catalog.ldc.upenn.edu/LDC2000S86 set -e set -o pipefail if [ $# -ne 2 ]; then echo "Usage: $0 <SOURCE-DIR> <dir>" echo "$0 /export/corpora/LDC/LDC2000S86/ data/lo...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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#!/usr/bin/env bash # Copyright 2016 University of Sheffield (Jon Barker, Ricard Marxer) # Inria (Emmanuel Vincent) # Mitsubishi Electric Research Labs (Shinji Watanabe) # Apache 2.0 (http://www.apache.org/licenses/LICENSE-2.0) # Config: nj=30 stage=0 # resume training with --stage=N e...
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#!/bin/bash array_size=10 # Number of jobs to run in an array in each launch job_size=10 # Number of boostraps to run in each job script_dir="/scratch/janine.bijsterbosch/WAPIAW_2/heterogeneity" # Log directory log_dir="/scratch/janine.bijsterbosch/WAPIAW_2/heterogeneity/log" # Default log directory name ("launch-...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Step 03 — build the CarlaUnreal UE 4.26 fork. # # Prereq: the fork is already cloned at $UE4_ROOT: # git clone --depth 1 -b carla https://github.com/CarlaUnreal/UnrealEngine.git $UE4_ROOT # (Requires a GitHub account linked to Epic Games; see SKILL.md "Access" note.) # # Produces ~80GB: the bund...
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#!/usr/bin/env bash . conf/common_vars.sh . ./lang.conf set -e set -o pipefail set -u # Wait till the main run.sh gets to the stage where's it's # finished aligning the tri5 model. echo "Waiting till exp/tri5_ali/.done exists...." while [ ! -f exp/tri5_ali/.done ]; do sleep 30; done echo "...done waiting for exp/t...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2017 QCRI (author: Ahmed Ali) # Apache 2.0 # This script prepares the dictionary. set -e dir=data/local/dict lexicon_url1="http://alt.qcri.org//resources/speech/dictionary/ar-ar_grapheme_lexicon_2016-02-09.bz2"; lexicon_url2="http://alt.qcri.org//resources/speech/dictionary/ar-ar_lexic...
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#!/usr/bin/env bash # Copyright 2014 QCRI (author: Ahmed Ali) # Apache 2.0 if [ -f path.sh ]; then . ./path.sh; else echo "missing path.sh"; exit 1; fi for dir in test train; do cp -pr data/local/$dir data/$dir done mkdir -p data/lang_test arpa_lm=data/local/lm/3gram-mincount/lm_unpruned.gz [ ! -f $arpa_l...
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#!/usr/bin/env bash # Copyright 2017 Luminar Technologies, Inc. (author: Daniel Galvez) # Apache 2.0 # The following commands were used to generate the mini_librispeech dataset: # # Note that data generation is random. This could be fixed by # providing a seed argument to the shuf program. if [ "$#" -ne 3 ]; then ...
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#!/bin/bash #SBATCH -n 1 # Request one core #SBATCH -N 1 # Request one node (if you request more than one core with -n, also using # -N 1 means all cores will be on the same node) #SBATCH -t 0-08:00 ...
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#!/usr/bin/env bash # Copyright 2018 AIShell-Foundation(Authors:Jiayu DU, Xingyu NA, Bengu WU, Hao ZHENG) # 2018 Beijing Shell Shell Tech. Co. Ltd. (Author: Hui BU) # 2020 Xuechen LIU # Apache 2.0 # transform raw AISHELL-2 data to kaldi format for speaker verification . ./path.sh || exit 1; tmp= ...
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#!/usr/bin/env bash # Copyright 2012 Johns Hopkins University (Author: Daniel Povey) # Apache 2.0 [ -f ./path.sh ] && . ./path.sh # begin configuration section. cmd=run.pl stage=0 decode_mbr=true min_lmwt=7 max_lmwt=17 #end configuration section. [ -f ./path.sh ] && . ./path.sh . parse_options.sh || exit 1; if [ $...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright Johns Hopkins University (Author: Daniel Povey) 2012 # Copyright University of Edinburgh (Author: Pawel Swietojanski) 2014 # Apache 2.0 orig_args= for x in "$@"; do orig_args="$orig_args '$x'"; done # begin configuration section. we include all the options that score_sclite.sh or # s...
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#!/usr/bin/env bash # Create the LMs and graphs and decode all test sets. # Some paths are hard coded in this script. set -e stage=0 nj=30 ivector_base= # Set to empty to disable ivector test_sets="fsh_dev nsc_ivr_test5k ted_test cv_en_indian_testdev cv_en_indian_other ted_dev" tree_dir= iter=final graphs="" decode...
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#!/bin/bash # # Copyright 2021 The Kubeflow Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law o...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2020-2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2015-2016 Sarah Flora Juan # Copyright 2016 Johns Hopkins University (Author: Yenda Trmal) # Copyright 2016 Radboud University (Author: Emre Yilmaz) # Apache 2.0 corpus=$1 set -e -o pipefail if [ -z "$corpus" ] ; then echo >&2 "The script $0 expects one parameter -- the location...
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#!/usr/bin/env bash # Copyright 2012 Johns Hopkins University (Author: Guoguo Chen) # Apache 2.0. if [ $# -ne 3 ]; then echo "Usage: local/kws_data_prep.sh <lang-dir> <data-dir> <kws-data-dir>" echo " e.g.: local/kws_data_prep.sh data/lang_test_bd_tgpr/ data/test_eval92/ data/kws/" exit 1; fi langdir=$1; ...
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Shell
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#MOLGENIS nodes=1 ppn=1 mem=14gb walltime=1:59:00 ### variables to help adding to database (have to use weave) #string sampleName #string project ### #string stage #string checkStage #string RVersion #string gatkVersion #string onekgGenomeFasta #string goldStandardVcf #string goldStandardVcfIdx #string oneKgPhase1Inde...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #SBATCH -n 1 # Request one core #SBATCH -N 1 # Request one node (if you request more than one core with -n, also using # -N 1 means all cores will be on the same node) #SBATCH -t 0-08:00 ...
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#!/bin/bash echo '*********************** Example 1:' python3 ompsimulator.py 0 dpname=omp1 lamm=0.1 lama=0.01 lamh=0.00001 nax=10 nol=2 taug=30 fixedel=nrn_5 tref=0 taus=200 jitter=1 spksig=sync saver=5 nwarmup=1 nreps=2 nepochs=20 Tesec=5 name=testrun1omp randseed=12345 echo '-----------------------------------------...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright (c) 2015, Johns Hopkins University (Yenda Trmal <jtrmal@gmail.com>) # License: Apache 2.0 # Begin configuration section. silence_word= filter='OOV=0' # End configuration section echo $0 "$@" . parse_options.sh || exit 1; set -e -o pipefail set -o nounset # ...
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#!/usr/bin/env bash # Script for minimum bayes risk decoding. [ -f ./path.sh ] && . ./path.sh; # begin configuration section. cmd=run.pl min_lmwt=7 max_lmwt=17 #end configuration section. [ -f ./path.sh ] && . ./path.sh . parse_options.sh || exit 1; if [ $# -ne 3 ]; then echo "Usage: local/score_mbr.sh [--cmd (r...
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#!/usr/bin/env bash # Script for minimum bayes risk decoding. [ -f ./path.sh ] && . ./path.sh; # begin configuration section. cmd=run.pl min_lmwt=7 max_lmwt=17 #end configuration section. [ -f ./path.sh ] && . ./path.sh . parse_options.sh || exit 1; if [ $# -ne 3 ]; then echo "Usage: local/score_sclite_conf.sh [...
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TITLE=ENCSR011PEI FASTQ1=/srv/scratch/shared/surya/leepc12/data/ENCODE_test/ENCSR011PEI/rep1/ENCFF282GDI_ENCFF316FIQ.fastq.gz FASTQ2=/srv/scratch/shared/surya/leepc12/data/ENCODE_test/ENCSR011PEI/rep2/ENCFF959EDS_ENCFF740WEF.fastq.gz CTL_FASTQ1=/srv/scratch/shared/surya/leepc12/data/ENCODE_test/ENCSR011PEI/ctl1/ENCFF72...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2012 Microsoft Corporation Johns Hopkins University (Author: Daniel Povey) # Apache 2.0 # This script takes data prepared in a corpus-dependent way # in data/local/, and converts it into the "canonical" form, # in various subdirectories of data/, e.g. data/lang, data/lang_test_ug, # ...
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#!/usr/bin/env bash # Script for minimum bayes risk decoding. [ -f ./path.sh ] && . ./path.sh; # begin configuration section. cmd=run.pl min_lmwt=7 max_lmwt=17 #end configuration section. [ -f ./path.sh ] && . ./path.sh . parse_options.sh || exit 1; if [ $# -ne 3 ]; then echo "Usage: local/score_sclite_conf.sh [...
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#!/usr/bin/env bash # Author : Gaurav Kumar, Johns Hopkins University # Creates n-best lists from Kaldi lattices # This script needs to be run from one level above this directory . ./path.sh if [ $# -lt 3 ]; then echo "Enter the latdir (where the n-best will be put), the decode dir containing lattices and the acous...
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#MOLGENIS nodes=1 ppn=1 mem=14gb walltime=5:59:00 ### variables to help adding to database (have to use weave) #string sampleName #string project ### #string stage #string checkStage #string samtoolsVersion #string gatkVersion #string onekgGenomeFasta #string goldStandardVcf #string goldStandardVcfIdx #string oneKgPha...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/sh # Set multiprocessing parameters export MKL_NUM_THREADS=10 export NUMEXPR_NUM_THREADS=10 export OMP_NUM_THREADS=10 PROCESSES=3 # Number of networks to simulate in parallel REPEATS=20 # Total number of networks to simulate _SIMULATION_PATH_PREFIX=$DATA_PATH/simulations/GIF_network _run_deriv_simulations()...
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#!/usr/bin/env bash # Copyright 2014 QCRI (author: Ahmed Ali) # Apache 2.0 if [ -f path.sh ]; then . ./path.sh; else echo "missing path.sh"; exit 1; fi set -e -o pipefail set -x for dir in dev train; do cp -prT data/local/$dir data/$dir done export LC_ALL=C arpa_lm=data/local/lm/3gram-mincount/lm_unpruned...
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#!/usr/bin/env bash # Copyright 2015-2016 Sarah Flora Juan # Copyright 2016 Johns Hopkins University (Author: Yenda Trmal) # Copyright 2017 Radboud University (Author: Emre Yilmaz) # Apache 2.0 corpus=$1 set -e -o pipefail if [ -z "$corpus" ] ; then echo >&2 "The script $0 expects one parameter -- the location...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash if [ $# -ne 2 ]; then echo "Usage: recipes/sync_to_remote.sh <from_dir> <to_dir>" echo "e.g.: $0 /path/to/local/corpus_folder/ /path/to/remote/corpus_folder" echo echo "This script synchronizes the contents of the corpus folder (.wav, .text, & .mp4)" echo "to a remote server using rsync. Needed only i...
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#!/usr/bin/env bash # . ./path.sh silprob=0.5 mkdir -p data/lang_test data/train data/dev arpa_lm=data/local/lm/3gram-mincount/lm_unpruned.gz [ ! -f $arpa_lm ] && echo No such file $arpa_lm && exit 1; # Copy stuff into its final locations... for f in spk2utt utt2spk wav.scp text; do cp data/local/train/$f data/...
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#!/usr/bin/env bash # Copyright 2017 Johns Hopkins University (Author: Aswin Shanmugam Subramanian) # Apache 2.0 # This script creates the average PESQ score of files in an enhanced directory with corresponding # files in a reference directory. # Expects the PESQ third party executable in "local/PESQ" # PESQ source w...
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#!/bin/bash #define file locations workdir=~/COEVOL/later_batch tree_loc=~/COEVOL/trees/tree_30sp_for_coevol.txt pheno_loc=~/COEVOL/pheno_coevol coevol_output_loc=$workdir/results_biohpc_good_noCuration #list of 113 proteins declare -a arr=("GI" "body_mass" "brain_mass" "body_mass_brain_mass_GI") declare -a arr_ru...