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#!/bin/bash -l ## ============================================================================= ## 1. Run siVAE on MNIST with 2 digits for visualization ## ============================================================================= ## siVAE models python run_MNIST_subset.py --method "siVAE" \ ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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pdbdir=../patchdock/pdbs/ zdock_out_base=../zdock/03-results PPI_PAIR_ID=$1 outdir=results/$PPI_PAIR_ID mkdir -p $outdir # Number of decoys per docked protein NUM_DECOYS=2000 # Copy the already protonated files from the PatchDock directory, renaming them to ZDock's naming scheme. PDBID=$(echo $PPI_PAIR_ID | cut -d"_" ...
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#!/usr/bin/env bash # this (local/nnet2/run_6c_gpu.sh) trains a p-norm neural network on top of # the SAT system in 5a. # It uses the online preconditioning, which is more efficient than the # old preconditioning. # this script uses 8 GPUs. # there is no non-GPU version as it would take way too long. dir=nnet6c_gp...
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#!/usr/bin/env bash # Copyright 2019 Jiawen Kang # Apache 2.0. # # This script prepares the CN-Celeb1 dataset. # It creates separate directories for train, eval enroll and eval test. # It also prepares a trials files, in the eval test directory. if [ $# != 2 ]; then echo "Usage: make_cnceleb1.sh <CN-Celeb1_PAT...
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#!/usr/bin/env bash # Copyright 2014 QCRI (author: Ahmed Ali) # Apache 2.0 echo $0 "$@" galeData=$(utils/make_absolute.sh "${@: -1}" ); length=$(($#-1)) args=${@:1:$length} top_pwd=`pwd` txtdir=$galeData/txt mkdir -p $txtdir; cd $txtdir for cdx in ${args[@]}; do echo "Preparing $cdx" if [[ $cdx == *.tgz ]] ;...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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pdbdir=../patchdock/pdbs/ zdock_out_base=../zdock/03-results PPI_PAIR_ID=$1 outdir=results/$PPI_PAIR_ID mkdir -p $outdir # Number of decoys per docked protein NUM_DECOYS=2000 # Copy the already protonated files from the PatchDock directory, renaming them to ZDock's naming scheme. PDBID=$(echo $PPI_PAIR_ID | cut -d"_" ...
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#!/bin/bash #SBATCH --job-name=liftover #SBATCH --output=liftover.out #SBATCH --error=liftover.err #SBATCH --time=08:00:00 #SBATCH --cpus-per-task=1 #SBATCH --mem=50gb #SBATCH --nodes=1 #SBATCH --open-mode=append #SBATCH --export=NONE #SBATCH --get-user-env=L ml Python/2.7.11-foss-2015b ml Java indir=$1 outdir=$indir...
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#!/bin/bash # script check if symulator is working # if not execute next simulation from the list of planned simulations stored in file $EXP_LIST_TO_RUN # script generate history of executed experiments in file #cd $WORK_PATH EXP_TO_RUN='remoteSimulation.sh' EXP_LIST_TO_RUN='remoteSimulationQueue.nsp' EXP_TMP...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#This script is not really supposed to be run directly #Instead, it should be sourced from the decoding script #It makes many assumption on existence of certain environmental #variables as well as certain directory structure. if [ "${dataset_kind}" == "supervised" ] ; then mandatory_variables="my_ecf_file my_kwlist_...
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#!/bin/bash ## ## exome/targeted sequencing somatic copy number variant calling ## # script filename script_path="${BASH_SOURCE[0]}" script_name=$(basename "$script_path") route_name=${script_name/%.sh/} echo -e "\n ========== ROUTE: $route_name ========== \n" >&2 # check for correct number of arguments if [ ! $# ...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2013 Johns Hopkins University (authors: Yenda Trmal) # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # THIS CODE IS ...
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#!/bin/bash # Promo reel from hybrid runs: each run's harmonized clip with a caption, 0.6 s cross-fades, 1080p H.264. # usage: make_reel.sh OUT.mp4 RUN_DIR:"caption" [RUN_DIR:"caption" ...] (RUN_DIR holds hybrid_temporal.mp4, else hybrid_final.mp4) # Captions are drawn in the lower-left corner during the first 4 s of...
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#!/bin/bash export minimap2=$HOME/DeepSelectNet/tools/minimap2/minimap2 POS_FASTQ=$1 NEG_FASTQ=$2 POS_REF=$3 NEG_REF=$4 MIXED_REF='mixed-ref.fasta.tmp' POS_CONTIGS='pos-contigs.tmp' NEG_CONTIGS='neg-contigs.tmp' MAPPED_POS='mapped-pos.paf.tmp' MAPPED_NEG='mapped-neg.paf.tmp' TRUE_POS='true-pos.list' TRUE_NEG='true-...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2013 Johns Hopkins University (authors: Yenda Trmal) # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # THIS C...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2017 QCRI (author: Ahmed Ali) # Apache 2.0 # This script prepares the dictionary. set -e dir=data/local/dict lexicon_url1="http://alt.qcri.org//resources/speech/dictionary/ar-ar_grapheme_lexicon_2016-02-09.bz2"; lexicon_url2="http://alt.qcri.org//resources/speech/dictionary/ar-ar_lexic...
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#!/usr/bin/env bash # Shared configuration load for every skill's env.sh. Sourced right after # `set -euo pipefail`, before the skill resolves anything itself. # # A newcomer cannot supply paths when registering the MCP server: the paths do # not exist yet, and the skill that creates them runs later. So the install # s...
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#!/usr/bin/env bash # Copyright 2018 Emotech LTD (Author: Xuechen LIU) # Apache 2.0 # compare wer between diff. models in aishell2 chain directory set -e . ./cmd.sh . ./path.sh if [ $# == 0 ]; then echo "Usage: $0: <dir1> [<dir2> ... ]" echo "e.g.: $0 exp/chain/tdnn_7h_sp" exit 1 fi echo "# $0 $*" set_name...
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#This script is not really supposed to be run directly #Instead, it should be sourced from the decoding script #It makes many assumption on existence of certain environmental #variables as well as certain directory structure. if [ "${dataset_kind}" == "supervised" ] ; then mandatory_variables="my_ecf_file my_kwlist...
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#!/bin/bash # # This script downloads all the necessary data and runs the end-to-end pipeline on a small demo data set. # # It takes 20 minutes to run on a 40 core machine with 128 GB of RAM. # # If your /tmp directory is on a filesystem with less than 10 GB of space, you can set the TMPDIR variable # in your environ...
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#!/bin/bash #SBATCH --ntasks=1 #SBATCH --time=6:00:00 #SBATCH --mem=15g #SBATCH --cpus-per-task=1 ml Java ml Python if [ "$#" -ne 3 ]; then echo "Usage: dumpdir outprefix chr" exit fi dumpdir=$1 outprefix=$2 chr=$3 # reformat to biogen preferred format python /groups/umcg-biogen/tmp01/tools/biogen/reform...
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#This script is not really supposed to be run directly #Instead, it should be sourced from the decoding script #It makes many assumption on existence of certain environmental #variables as well as certain directory structure. if [ "${dataset_kind}" == "supervised" ] ; then mandatory_variables="my_ecf_file my_kwlist_...
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#!/bin/bash #!/bin/bash module load fsl/6.0.3 source $FSLDIR/etc/fslconf/fsl.sh MASKFACE_HOME=/scratch/cs/faceai/projects/faceai_testingdefacing/software/external/MaskFace/lin64.Dec2017 PATH=${MASKFACE_HOME}/bin:${PATH} export PATH MASKFACE_HOME module load matlab/r2018a # do some validation of the input folder cu...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash DATA_NAME=(${@:1:1}) echo ${DATA_NAME} WD_DIR=${HOME}/scratch DATA_DIR=${WD_DIR}/${DATA_NAME} BIDS_DIR=${DATA_DIR}_BIDS CODE_DIR=${WD_DIR}/src CODE_SLURM=${CODE_DIR}/fmriprep_anat.slurm CODE_COLLECT=${CODE_DIR}/fmriprep_anat.format SUB_LIST=${CODE_DIR}/${DATA_NAME}_fmriprep_preopt.list CON_IMG_DIR=${WD_DI...
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#!/usr/bin/env bash for test in dev93 eval92; do steps/lmrescore.sh --cmd "$decode_cmd" data/lang_test_bd_tgpr data/lang_test_bd_fg \ data/test_${test} exp/sgmm5b_mmi_b0.1/decode_bd_tgpr_${test}_it4 exp/sgmm5b_mmi_b0.1/decode_bd_fg_${test}_it4 || exit 1; # Note: for N-best-list generation, choosing the acoust...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2021 Seasalt AI, Inc (Author: Guoguo Chen) # 2021 Xiaomi Corporation (Author: Yongqing Wang) # This script prepares the data folders for the GigaSpeech dataset. set -e -o pipefail stage=0 train_subset=XL test_sets="gigaspeech_dev gigaspeech_test" . ./path.sh || exit 1; . ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2015 QCRI (author: Ahmed Ali) # Apache 2.0 # This example script trains a LSTM network on FBANK features. # The LSTM code originally comes from tedlium . ./cmd.sh . ./path.sh dev=data-fbank/test train=data-fbank/train dev_original=data/test train_original=data/train gmm=exp/tri3b ...
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#!/usr/bin/env bash # Copyright 2017 Radboud University (Author: Emre Yilmaz) # # This script is based on run_nnet2_multisplice.sh in # egs/fisher_english/s5/local/online. It has been modified # for speaker recognition. stage=1 train_stage=-10 use_gpu=true set -e . ./cmd.sh . ./path.sh . utils/parse_options.sh # as...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright, University of Edinburgh (Pawel Swietojanski and Jonathan Kilgour) if [ $# -ne 1 ]; then echo "Usage: $0 <ami-dir>" exit 1; fi adir=$1 wdir=data/local/annotations [ ! -f $adir/annotations/AMI-metadata.xml ] && echo "$0: File $adir/annotations/AMI-metadata.xml no found." && exit 1...
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#!/usr/bin/env bash # Self-contained environment for the navigate-to skill (RUNTIME/client). # Source before the skill's other scripts: source env.sh # # Acts on a running CARLA server AND uses CARLA's navigation `agents` package # (BasicAgent/BehaviorAgent/GlobalRoutePlanner). That package ships in the CARLA # checko...
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#!/usr/bin/env bash mic=ihm ngram_order=3 # this option when used, the rescoring binary makes an approximation # to merge the states of the FST generated from RNNLM. e.g. if ngram-order = 4 # then any history that shares last 3 words would be merged into one state stage=1 weight=0.5 # when we do lattice-resco...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # This script creates speed perturbed versions of the training data # and generates the corresponding alignments mic=ihm nj=10 stage=0 use_sat_alignments=true . ./cmd.sh . ./path.sh . ./utils/parse_options.sh speed_perturb_datadir() { mic=$1 dataset=$2 extract_features=$3 utils/perturb_...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright (c) 2015, Johns Hopkins University ( Yenda Trmal <jtrmal@gmail.com> ) # License: Apache 2.0 # Begin configuration section. stage=0 # End configuration section . ./utils/parse_options.sh set -e -o pipefail set -o nounset # Treat unset variables as an error ....
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#!/usr/bin/env bash # Copyright 2012 Johns Hopkins University (Author: Daniel Povey) # Apache 2.0 [ -f ./path.sh ] && . ./path.sh # begin configuration section. cmd=run.pl stage=0 decode_mbr=true word_ins_penalty=0.0 min_lmwt=7 max_lmwt=17 #end configuration section. [ -f ./path.sh ] && . ./path.sh . parse_options....
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#!/usr/bin/env bash # Copyright 2012 Johns Hopkins University (Author: Daniel Povey) # Apache 2.0 [ -f ./path.sh ] && . ./path.sh # begin configuration section. cmd=run.pl stage=0 decode_mbr=true word_ins_penalty=0.0 min_lmwt=5 max_lmwt=17 #end configuration section. [ -f ./path.sh ] && . ./path.sh . parse_options....
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#!/usr/bin/env bash # Self-contained environment for the install-leaderboard skill (SETUP). # Source before the skill's other scripts: source scripts/env.sh # # This skill *creates* LEADERBOARD_ROOT / SCENARIO_RUNNER_ROOT, so an unset value # is normal here rather than an error. # # LEADERBOARD_ROOT existing le...
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#!/usr/bin/env bash # if [ -f ./path.sh ]; then . ./path.sh; fi silprob=0.5 mkdir -p data/lang_test data/train data/dev arpa_lm=data/local/lm/3gram-mincount/lm_unpruned.gz [ ! -f $arpa_lm ] && echo No such file $arpa_lm && exit 1; # Copy stuff into its final locations... for f in spk2utt utt2spk wav.scp text segm...
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#!/usr/bin/env bash # Copyright 2014 Johns Hopkins University (author: Vijayaditya Peddinti) # Apache 2.0 # This script operates on a directory, such as in exp/tri4a_ali, # that contains some subset of the following files: # ali.*.gz # tree # cmvn_opts # splice_opts # num_jobs # final.mdl # It copies to anothe...
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#!/bin/bash #define file locations workdir=~/COEVOL/later_batch tree_loc=~/COEVOL/trees/tree_30sp_for_coevol.txt pheno_loc=~/COEVOL/pheno_coevol coevol_output_loc=$workdir/results_biohpc_good_curated #list of 113 proteins declare -a arr=("GI" "body_mass" "brain_mass" "body_mass_brain_mass_GI") declare -a arr_run=(...
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#!/bin/bash # # This script downloads all the necessary data and runs the end-to-end pipeline on a small demo data set. # # It takes about 2 hours to run. # # The parameters below are tuned for a 40 core machine, with 128 GB of RAM. # # If your /tmp directory is on a filesystem with less than 10 GB of space, you can ...
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#!/bin/bash # # This script downloads all the necessary data and runs the end-to-end pipeline on a small demo data set. # # It takes about 2 hours to run. # # The parameters below are tuned for a 40 core machine, with 128 GB of RAM. # # If your /tmp directory is on a filesystem with less than 10 GB of space, you can ...
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#!/bin/bash # Copyright 2020 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #PBS -N drugex_testing #PBS -q cheminf #PBS -l select=1:ncpus=12:ngpus=3:mem=16gb #PBS -l walltime=720:00:00 #PBS -m ae set -e # set important variables export MODEL=${MODEL} export CONDA_ENV=${CONDA_ENV} export EXPERIMENT_ID=${EXPERIMENT_ID} export WORKDIR=${WORKDIR:-`pwd`} export N_EPOCHS=${N_EPOCHS:-30...
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#!/bin/bash # # This script downloads all the necessary data and runs the end-to-end pipeline on a medium demo data set. # # The parameters below are tuned for a 40 core machine, with 128 GB of RAM. # # If your /tmp directory is on a filesystem with less than 10 GB of space, you can set the TMPDIR variable # in your ...
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#!/usr/bin/env bash # Self-contained environment for the load-map skill (a RUNTIME/client skill). # Source before the skill's other scripts: source env.sh # # Unlike the build skills, load-map acts on a *running* CARLA server through the # Python API — it needs an importable `carla` module and a reachable server, NOT ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/sh #author: Mahbub Ul Alam (mahbub@dsv.su.se) #version: 1.0+ #copyright: Copyright (c) Mahbub Ul Alam (mahbub@dsv.su.se) #license : MIT License #sh run_batch_numeric_experiments.sh -e 1 -b 1000 -s episode_wise_precision &>> log_1_experiment_numeric.txt & #['experiment_number', 'time_window', 'training_label...
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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kubeflow/katib repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, based on tha...
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#!/usr/bin/env bash # Copyright (c) 2015, Johns Hopkins University ( Yenda Trmal <jtrmal@gmail.com> ) # License: Apache 2.0 # Begin configuration section. stage=0 # End configuration section . ./utils/parse_options.sh set -e -o pipefail set -o nounset # Treat unset variables as an error ....
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#!/bin/bash # Copyright 2020 Audio, Speech and Language Processing Group (ASLP@NPU), Northwestern Polytechnical University(Authors: Zhuoyuan Yao, Xiong Wang, Jingyong Hou, Lei Xie) # 2020 AIShell-Foundation(Authors:Bengu WU) # 2020 Beijing Shell Shell Tech. Co. Ltd. (Author: Hui BU) # Apache 2.0 ...
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#!/usr/bin/env bash # Copyright 2015 Johns Hopkins University (author: Vijayaditya Peddinti) # Apache 2.0 # This script downloads the impulse responses from the Varechoic room # available at # http://www1.icsi.berkeley.edu/Speech/papers/gelbart-ms/pointers/ download=true sampling_rate=8k output_bit=16 DBname=VARECHOI...
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#!/usr/bin/env bash # this script is used for comparing decoding results between systems. # e.g. local/chain/compare_wer.sh exp/chain/cnn{1a,1b} # ./local/chain/compare_wer.sh exp/chain/cnn1a # System cnn1a # WER 0.61 # CER 0.15 # Fina...
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#!/usr/bin/env bash # decode all test sets with all graphs stage=0 dir=exp/chain/tdnn1a nj=30 graphs="exp/chain/tree_sp/graph_tg" ivector_base=exp/nnet3 test_sets="test_ldc" iter=final decode_opts="" # will be set to a default if empty suffix="" overwrite=false echo "$0 $@" # Print the command line for logging f...
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# Set default values for parameters container=`docker ps -l -q --filter name=nsp_genesis` # Process command line arguments while [[ $# -gt 0 ]] do key="$1" case $key in -c|--container) container="$2" shift # past argument shift # past value ;; -h|--help) echo "Usage: ./...
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########################################################################################## ## UGER job submission script ## run global MAGMA analysis for each ASD network (ints vs. genomic background) ## Step 2 of 2: run gene and gene set annalysis steps for each network and each trait ## for GWAS traits: ASD ADHD BIP ...
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#!/bin/bash #define file locations workdir=~/COEVOL/later_batch tree_loc=~/COEVOL/trees/tree_30sp_for_coevol.txt pheno_loc=~/COEVOL/pheno_coevol coevol_output_loc=$workdir/results_biohpc_good_noCuration #list of 113 proteins declare -a arr=("GI" "body_mass" "brain_mass" "body_mass_brain_mass_GI") declare -a arr_ru...
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#!/usr/bin/env bash # Copyright 2013 Johns Hopkins University (authors: Guoguo Chen, Yenda Trmal) # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2...
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#!/bin/bash echo "----------------------------------------" echo "| modeltest benchmark suite |" echo "----------------------------------------" # select whether you want to restore existing checkpoint files # warning: execution times might not be valid restore_ckp=false skip_eval=true testname=$1 data_ty...
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#!/usr/bin/env bash # Copyright 2017 Matthew Maciejewski # Apache 2.0 # # Takes a data directory without segmentation but with a vad.scp # file and outputs a new data directory with segmentation # begin configuration section. nj=2 stage=0 cmd=run.pl segmentation_opts= # E.g. set this as --segmentation-opts "--silan...
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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kubeflow/pipelines repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, based on...
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#!/bin/bash # Copyright 2020-2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable...
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#!/usr/bin/env bash . cmd.sh set -e dev_set= # Thish runs on all the data data/train_nodup; the triphone baseline, tri4 is # also trained on that set if [ -e data/train_dev ]; then dev_set=train_dev fi ### MMI training # MMI training starting from the LDA+MLLT+SAT systems with the entire train_nodup (233hr) steps...
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#!/usr/bin/env bash # Copyright 2015 David Snyder # Apache 2.0. # # This script trains PLDA models and does scoring. use_existing_models=false simple_length_norm=false # If true, replace the default length normalization # performed in PLDA by an alternative that # n...
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Shell
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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kubeflow/kfp-tekton repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, based o...
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#!/bin/bash # to run this script automatically on a monthly basis, add the following line to your crontab using `crontab -e`: # 0 0 15 * * sh ~/crg2/utils/download_clinvar.sh set -e server=$1 DATE=`date +%Y-%m-%d` if [ -z "$server" ]; then echo "Usage: $0 <server>" echo "server: hpf or g4rd" exit 1 fi if ...
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#! /bin/bash # Copyright 2016 Vimal Manohar # Apache 2.0. # This script prepares 1999 HUB4 Broadcast News Evaluation English Test Material # https://catalog.ldc.upenn.edu/LDC2000S88 set -e set -o pipefail if [ $# -ne 2 ]; then echo "Usage: $0 <SOURCE-DIR> <dir>" echo "$0 /export/corpora5/LDC/LDC2000S88/hub4_1...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/bin/bash #SBATCH --job-name=PAPER_PLOTS #SBATCH --output=/groups/umcg-biogen/tmp03/output/2019-11-06-FreezeTwoDotOne/2020-03-12-deconvolution/jobs/output/PAPER_PLOTS.out #SBATCH --error=/groups/umcg-biogen/tmp03/output/2019-11-06-FreezeTwoDotOne/2020-03-12-deconvolution/jobs/output/PAPER_PLOTS.out #SBATCH --time=05:...
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#!/bin/bash # deepTools generate BigWig from BAM # script filename script_path="${BASH_SOURCE[0]}" script_name=$(basename "$script_path") segment_name=${script_name/%.sh/} echo -e "\n ========== SEGMENT: $segment_name ========== \n" >&2 # check for correct number of arguments if [ ! $# == 4 ] ; then echo -e "\n $...
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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kserve/models-web-app repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, based...
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Shell
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#!/usr/bin/env bash # this script creates a new data directory data/sdm1/train_cleanali or # data/mdm8/train_cleanali which has the segment ids from (e.g.) data/sdm1/train # but the wav data is copied from data/ihm. This is a little tricky because the # utterance ids are different between the different mics train_s...
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Shell
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#!/usr/bin/env bash # if [ -f path.sh ]; then . ./path.sh; fi mkdir -p data/lang_test arpa_lm=data/local/lm/3gram-mincount/lm_unpruned.gz [ ! -f $arpa_lm ] && echo No such file $arpa_lm && exit 1; mkdir -p data/lang_test cp -r data/lang/* data/lang_test # grep -v '<s> <s>' etc. is only for future-proofing this scr...
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#!/bin/bash # Copyright 2021 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # Copyright 2014 (author: Hainan Xu, Ahmed Ali) # Apache 2.0 . ./path.sh . ./cmd.sh #train DNN mfcc_fmllr_dir=mfcc_fmllr baseDir=exp/tri3b alignDir=exp/tri3b_ali dnnDir=exp/tri3b_dnn_2048x5 align_dnnDir=exp/tri3b_dnn_2048x5_ali dnnLatDir=exp/tri3b_dnn_2048x5_denlats dnnMPEDir=exp/tri3b_dnn_2048x5...
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#!/usr/bin/env bash # # Usage # --------------- # 1. Clone second version of Bootstrap in sibling directory named `bs-docs`. # 2. Within `bs-docs` copy, switch to `gh-pages` branch. # 3. Pull latest, re-bundle, re-npm. # 4. Run script. red=$'\e[1;31m' green=$'\e[1;32m' #blue=$'\e[1;34m' magenta=$'\e[1;35m' #cyan=$'\e[...
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#!/usr/bin/env bash # Copyright 2014 Vimal Manohar, Johns Hopkins University (Author: Jan Trmal) # Apache 2.0 nj=16 # nj for training subset of whole cmd=run.pl # How to run the parallel tasks boost_sil=1.0 ext_alidir= # Use this alignment directory instead for getting new one # End of conf...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/env bash # This script aims at helping create a PR to update the manifests of the # kubeflow/training-operator repo. # This script: # 1. Checks out a new branch # 2. Copies files to the correct places # 3. Commits the changes # # Afterwards the developers can submit the PR to the kubeflow/manifests # repo, ...
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#!/usr/bin/bash set -euxo pipefail GSE=GSE1303990 GSE_train=GSE1303990 sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt' ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv' cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt' for di...
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Shell
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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Shell
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#!/bin/bash # Copyright 2022 Huawei Technologies Co., Ltd # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law ...
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#! /usr/bin/bash VARIABLES=`diff <(compgen -A variable) <(. ./lang.conf.orig; compgen -A variable) | grep '^>'| sed 's/^> *//g'` . ./conf/common_vars.sh . ./lang.conf.orig for variable in $VARIABLES ; do eval VAL=\$${variable} if [[ $VAL =~ /export/babel/data/ ]] ; then eval $variable=${VAL/${BASH_REM...
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#!/usr/bin/env bash # Copyright 2018 Emotech LTD (Author: Xuechen Liu) # compare wer between diff. models in aidatatang_200zh nnet3 directory # exemplar usage: local/nnet3/compare_wer.sh exp/nnet3/tdnn_sp # note: this script is made quite general since we kinda wanna give more flexibility to # users on adding a...
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Shell
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#!/usr/bin/env bash # Self-contained environment for the install-scenario-runner skill (SETUP). # Source before the skill's other scripts: source scripts/env.sh # # This skill *creates* SCENARIO_RUNNER_ROOT, so unlike the scenario-runner group # it treats an unset value as normal, not as an error. # # SCENARIO_RUNNE...
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#!/usr/bin/env bash . ./path.sh . ./cmd.sh ## You'll want to change cmd.sh to something that will work on your system. ## This relates to the queue. nJobs=120 nDecodeJobs=40 galeData=GALE mfccdir=mfcc if [[ ! -d exp/tri3b_ali ]]; then echo "exp/tri3b_ali lattices are required for alignmnet" exit 1 ...