sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
cfc7f76a7f59461cf6e97ed567911c3b1a3cd746f25ddb10d0a97d6980ac1db9 | Shell | 2,018 | 62 | #!/bin/bash
# Argoverse-HD dataset (ring-front-center camera) http://www.cs.cmu.edu/~mengtial/proj/streaming/
# Download command: bash data/scripts/get_argoverse_hd.sh
# Train command: python train.py --data argoverse_hd.yaml
# Default dataset location is next to /yolov5:
# /parent_folder
# /argoverse
# /yolo... |
722ab2839f3f16bfe4fd6f762bfc4e0b1c9ce69d4da4bec24d6b9328f2a7018c | Shell | 2,020 | 63 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
6cf9dd892f584d502dd5dda8b1ad065d0c89934700bd4ef44abf8c2539666fe5 | Shell | 2,021 | 67 | #!/bin/bash
# Computing basic branch statistics
# NOTE: this requires downloading the meshes
# (through downloadNeuronMeshes.sh)
python scripts/computebasicbranchstats.py \
data/pyc_analysis_ids.csv \
data/distancebinstats.csv \
--branchtype distancebins
# Associating mitochondria to skeleton nodes
# N... |
bc22df1e7ed15435e1966e0cfe87ec183ee29cd673654cb506bc28872cd64d06 | Shell | 2,022 | 43 | #!/usr/bin/bash
set -euxo pipefail
GSE=GSE126074
GSE_train=GSE126074
sf_marker='GABAergic_markers_fc.txt,Glutamatergic_markers_fc.txt,Non.Neuronal_markers_fc.txt'
ta_marker='tasic2016_gaba.csv,tasic2016_glu.csv,tasic2016_gli.csv'
cu_marker='cusanovich2018_inh.txt,cusanovich2018_ext.txt,cusanovich2018_gli.txt'
for dist... |
4c857e0a41bb09cdcc6de6e7b6f80451a5c8eed6f0056e8b6383709dea372a4b | Shell | 2,030 | 82 | #!/usr/bin/env bash
# Copyright 2018 Emotech LTD (Author: Xuechen Liu)
# compare wer between diff. models in hkust nnet3 directory
# exemplar usage: local/nnet3/compare_wer_general.sh exp/nnet3/tdnn_sp exp/nnet3/tdnn_sp_pr43
# note: this script is made quite general since we kinda wanna give more flexibility to
# ... |
b1e75e47d858a58a37ca3f1537cbee516304a194e22e752a0f0ccfd3252a9299 | Shell | 2,030 | 51 | #!/bin/bash
#define file locations
workdir=~/COEVOL/later_batch
tree_loc=~/COEVOL/trees/tree_30sp_for_coevol.txt
pheno_loc=~/COEVOL/pheno_coevol
coevol_output_loc=$workdir/results_biohpc_good_curated
#list of 113 proteins
declare -a arr=("GI" "body_mass_brain_mass_GI")
#declare -a arr=("GI" "body_mass" "brain_mass... |
439f16eae6f9dd8014826334f26064af2a791bb2ee0c2ba7eb3c55652339310e | Shell | 2,033 | 57 | #!/usr/bin/env bash
# Copyright 2013 (Author: Daniel Povey)
# Apache 2.0
# This script takes data prepared in a corpus-dependent way
# in data/local/, and converts it into the "canonical" form,
# in various subdirectories of data/, e.g. data/lang, data/train, etc.
. ./path.sh || exit 1;
echo "Preparing train, dev ... |
af0c713143565b81c9f835c5729ad4f111c9312906df2bd0fffa9cbe1468e655 | Shell | 2,035 | 79 | #!/usr/bin/env bash
# Copyright 2014, University of Edinburgh (Author: Pawel Swietojanski)
# Apache 2.0
wiener_filtering=false
nj=4
cmd=run.pl
# End configuration section
echo "$0 $@" # Print the command line for logging
[ -f ./path.sh ] && . ./path.sh; # source the path.
. parse_options.sh || exit 1;
if [ $# != ... |
e66da880578913652ca267cd4fc612108501aec27facdf9a7405f5c66f555c6b | Shell | 2,036 | 70 | #!/bin/bash
#SBATCH --job-name=gene_coverage
#SBATCH --time=24:00:00
#SBATCH --ntasks-per-node=1
#SBATCH --mem=4G
#SBATCH --output=%x-%j.out
#SBATCH --constraint=CentOS7
#SBATCH --mail-type=ALL
# Usage: sbatch ~/crg2/utils/wgs_gene_coverage/get_gene_coverage.sh <gene_name> </path/to/crams>
set -e
GENE=$1
DIR=$2 # D... |
94009492a75e530235ef7195d9ba51f8fd9de82096293073983de125092fd6af | Shell | 2,037 | 57 | #!/bin/bash
# Do not add a trailing slash to any of the paths!
INPUT_FOLDER='/input'
OUTPUT_FOLDER='/output'
DATA_FOLDER='/DATA'
ATLAS_DATA_FOLDER=$DATA_FOLDER'/ATLAS'
ELASTIX_DATA_FOLDER=$DATA_FOLDER'/ELASTIX'
MODEL_FOLDER=$DATA_FOLDER'/MODEL'
registration_folder=$OUTPUT_FOLDER'/Registered'
mkdir -p $registration_f... |
55f7f7e527f348a19a377f52dc4f76aed442d206190bb87bd7feb9067411c585 | Shell | 2,039 | 74 | #!/bin/bash
DATA_NAME=(${@:1:1})
echo ${DATA_NAME}
WD_DIR=${HOME}/scratch
DATA_DIR=${WD_DIR}/${DATA_NAME}
BIDS_DIR=${DATA_DIR}_BIDS
CODE_DIR=${WD_DIR}/ET_biomarker/scripts/fmriprep
CODE_SLURM=${CODE_DIR}/fmriprep_anat.slurm
CODE_COLLECT=${CODE_DIR}/fmriprep_anat.format
SUB_LIST=${CODE_DIR}/${DATA_NAME}_fmriprep.list
... |
e088d2d35b137c52b3c8a860599ae8b57f9fcf3b56ccc9aa6a5117494fd04bc0 | Shell | 2,042 | 81 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
8e854eee683bee38588e0f1e0aa8c7f53ae468b60cde0a8acc3c66303ee753e2 | Shell | 2,049 | 57 | #!/usr/bin/env bash
# Copyright 2013 (Author: Daniel Povey, Bagher BabaAli)
# Apache 2.0
# This script takes data prepared in a corpus-dependent way
# in data/local/, and converts it into the "canonical" form,
# in various subdirectories of data/, e.g. data/lang, data/train, etc.
. ./path.sh || exit 1;
echo "Prepa... |
c2e1ec6a7a8fdd860c0432ff6a4c438b87aed8ff1103bfa0bb0567ba7c943dc5 | Shell | 2,050 | 64 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
e325f7a93cd71f6f3fefb4d6d22c6c43844fc284ef5715977b1b63f1a2bd56ee | Shell | 2,052 | 86 | #!/usr/bin/env bash
# Copyright 2014 Johns Hopkins University (author: Daniel Povey)
# 2017 Xingyu Na
# Apache 2.0
remove_archive=false
if [ "$1" == --remove-archive ]; then
remove_archive=true
shift
fi
if [ $# -ne 2 ]; then
echo "Usage: $0 [--remove-archive] <data-base> <url-base>"
echo "e.... |
d280548acf17b40b14a6d00b1b2b029add0282e6b4db12c9c6afd26d9f902ada | Shell | 2,059 | 75 | #!/bin/bash
#SBATCH --job-name=mriqc
#SBATCH --time=03:00:00
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=2
#SBATCH --mem-per-cpu=2gb
#SBATCH --account=iacc_nbc
#SBATCH --qos=pq_nbc
#SBATCH --partition=IB_16C_96G
# Outputs ----------------------------------
#SBATCH --output=/home/data/abcd/abcd-hispanic... |
5d89bc9c47738b4a075aed9c93031bdd30bb02f5bff504c97aa0bc58afab0bd0 | Shell | 2,062 | 59 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
c6264269ae2452c12f615bcfc379260048266b4e6468ebe557037d88079f9b3a | Shell | 2,062 | 88 | #!/usr/bin/env bash
# Copyright 2014 Johns Hopkins University (author: Daniel Povey)
# 2017 Xingyu Na
# Apache 2.0
remove_archive=false
if [ "$1" == --remove-archive ]; then
remove_archive=true
shift
fi
if [ $# -ne 2 ]; then
echo "Usage: $0 [--remove-archive] <data-base> <url-base>"
echo "e.... |
712aa1170f516356f68f248611900d30f7fae6d2f36db1218242f1072bfab45d | Shell | 2,063 | 56 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
01488ea1d028450ce7fb14f71027c9fa0589b56efbdbca0f7c5e378b224060e4 | Shell | 2,067 | 67 | #!/bin/bash
## Directories
logdir="/home/yongin/Gen/181130_IntMethod_test/1212/out/exp10"
## Parameter Lists for Looping
# Network Setup
# declare -a network_setup_list=('0_5_5_5' '5_5_5' '0_5_5_15')
# declare -a network_setup_list=('0_5_5_15' '0_5_5_5' '5_5_5')
declare -a network_setup_list=('0_5_5_15' '5_5_15' '0_5... |
4516416e87d8abae7a63df1519dae430046298e9f4f0eea55c61fcf9c2898455 | Shell | 2,067 | 69 | #!/bin/bash
set -e
NAMESPACE=kubeflow
TIMEOUT=120 # timeout in seconds
SLEEP_INTERVAL=30 # interval between checks in seconds
RAY_VERSION=2.2.0
function trap_handler {
kill $PID
# Delete RayCluster
kubectl -n $NAMESPACE delete -f raycluster_example.yaml
# Wait for all Ray Pods to be deleted.
start_time=... |
a3da645f78eb0630c84824292821e61902c08206290411505baad2683b156e2a | Shell | 2,068 | 46 | #!/bin/bash
declare -a arr=("brain_mass" "body_mass" "body_mass_brain_mass_GI" "GI")
declare -a arr_run=(1 2 3)
declare -a arr_sp=(30)
for sp in "${arr_sp[@]}"
do
#define file locations
prank_alignment_loc=/data/share/htp/TRNP1/paper_data/protein/fastas/prank_output/prank_TRNP1_coding_"$sp"species_forCoevol_longer... |
105d08d24246c8a0df27ff45a6fd6a1c47b212d27ea65b8c1b65c1afe6832ced | Shell | 2,069 | 69 | #!/usr/bin/env bash
# Copyright 2018 Desh Raj (Johns Hopkins University)
# Apache 2.0
# This script downloads the Bentham handwriting database and prepares the training
# and test data (i.e text, images.scp, utt2spk and spk2utt) by calling create_splits.sh.
# In addition, it downloads data for all texts of B... |
1fb6d3383dffdd2691da8f99a3b6b8b949f515eb96bcf412ade7142778eed331 | Shell | 2,070 | 105 | #MOLGENIS nodes=1 ppn=4 mem=12gb walltime=05:59:00
### variables to help adding to database (have to use weave)
#string internalId
#string sampleName
#string project
###
#string stage
#string checkStage
#string picardVersion
#string iolibVersion
#string reads1FqGz
#string reads2FqGz
#string samtoolsVersion
#string ali... |
44c884c2a12b0f3c994acea1c7adf978572e3f205ebbe827271ee682339f8d1c | Shell | 2,075 | 61 | #!/usr/bin/env bash
# Copyright 2017 Xingyu Na
# Apache 2.0
. ./path.sh || exit 1;
if [ $# != 2 ]; then
echo "Usage: $0 <audio-path> <text-path>"
echo " $0 /export/a05/xna/data/data_aishell/wav /export/a05/xna/data/data_aishell/transcript"
exit 1;
fi
aishell_audio_dir=$1
aishell_text_dir=$2
train_dir=data/lo... |
8540aa5dee4525b27fe9f9e7fb07a05395878d4a9c512b9cfffcdc4ea4c8f46b | Shell | 2,075 | 66 | #!/usr/bin/env bash
# Copyright 2016 Vimal Manohar
# 2016 Johns Hopkins University (author: Daniel Povey)
# 2017 Nagendra Kumar Goel
# 2019 AsusTek Computer Inc. (author: Alex Hung)
# Apache 2.0
# This script demonstrates how to re-segment training data selecting only the
# "... |
55d4f1a81d431816ac349bb3cb9da0c4ee9157baf01766bb4bf1c483afc830c1 | Shell | 2,077 | 77 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
d3e95d7513a4b35b7dedbedd9997dc9c2afb901a6fbfc2cb79ce6f2a37cbe0bb | Shell | 2,079 | 58 | # Set environment variables.
export MKL_NUM_THREADS=2
export NUMEXPR_NUM_THREADS=2
export OMP_NUM_THREADS=2
# Define constants.
REPEATS=20
PROCESSES=10
oscillation_input=../../data/simulations/GIF_network/oscillation_input/oscillation_input.dat
python ./input_generators/oscillation.py $oscillation_input -v --baseline... |
370b63eaa38d7029c9c918ef2cb1e524e90fc9279ab878b4dd01906b0c2a9a22 | Shell | 2,085 | 42 |
# Set default values for parameters
containerName=`docker ps -l -q --filter name=nsp_genesis`
# Process command line arguments
while [[ $# -gt 0 ]]
do
key="$1"
case $key in
-c|--container)
containerName="$2"
shift # past argument
shift # past value
;;
-h|--help)
echo "U... |
67cf909d4b9f25d2f15e3ea2f93bd80adc21255de3de08b09eb986e5caab3bf6 | Shell | 2,088 | 63 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
166569521e98a8eaa4c98b9ef5034ea3ce139bad23c97dc02b5a627646798c5b | Shell | 2,089 | 60 | # Set environment variables.
export MKL_NUM_THREADS=2
export NUMEXPR_NUM_THREADS=2
export OMP_NUM_THREADS=2
# Define constants.
SERMODS=../../data/models/5HT/5HT_AugmentedGIFs.lmod
GABAMODS=../../data/models/GABA/GABA_iGIF_NPs.lmod
REPEATS=20
PROCESSES=10
wave_input=../../data/simulations/GIF_network/wave_input/wave_... |
3e1f0315d421fa7af67ae1a06d1480269c7838b17ab68b14ffd9bcb7dc00cb32 | Shell | 2,094 | 85 | #!/usr/bin/env bash
# Copyright 2014 Johns Hopkins University (author: Daniel Povey)
# 2017 Luminar Technologies, Inc. (author: Daniel Galvez)
# 2017 Ewald Enzinger
# Apache 2.0
# Adapted from egs/mini_librispeech/s5/local/download_and_untar.sh (commit 1cd6d2ac3a935009fdc4184cb8a72ddad98f... |
4e658f4aad9940945f12bdac671466be83d462e259b8e45db7d4aa5a52d73f92 | Shell | 2,094 | 68 | #!/usr/bin/env bash
# Copyright 2014 Johns Hopkins University (Author: Vijayaditya Peddinti)
# 2015 Tom Ko
# Apache 2.0.
# This script processes generates multi-condition training data from clean data dir
# and directory with impulse responses and noises
. ./cmd.sh;
set -e
random_seed=0
snrs="20:10:15:5:... |
990ff8b9594dc7c0a45a3a0296e0ae640fb3b781a8854654ac6756bfa41c7b59 | Shell | 2,101 | 50 | #!/usr/bin/env bash
. ./cmd.sh
steps/make_denlats.sh --nj 30 --sub-split 30 --cmd "$train_cmd" \
--transform-dir exp/tri4b_ali_si284 \
data/train_si284 data/lang exp/tri4b exp/tri4b_denlats_si284 || exit 1;
steps/train_mmi.sh --cmd "$train_cmd" --boost 0.1 \
data/train_si284 data/lang exp/tri4b_ali_si284 exp/tr... |
c96fa335c5a17e262b16e8a022fb0d1f337f4003179c8c8d885cb19ad6d4d3e1 | Shell | 2,107 | 82 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
a9d97637ac95dbbe152e4bca44b93e7fa1c10066954ffabd6aad1607f93a8afe | Shell | 2,108 | 81 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
69ca26d23628e1c8ff333f1044888b945f6f7ccc969791ffaceb20987938dfeb | Shell | 2,109 | 80 | #!/usr/bin/env bash
# Copyright 2014, University of Edinburgh (Author: Pawel Swietojanski)
# Apache 2.0
wiener_filtering=false
nj=4
cmd=run.pl
# End configuration section
echo "$0 $@" # Print the command line for logging
[ -f ./path.sh ] && . ./path.sh; # source the path.
. parse_options.sh || exit 1;
if [ $# != ... |
c89f80d432cc7c9fbae156e63cb08af93f15b92342aca873c3980ec66af5fc81 | Shell | 2,119 | 50 | #!/usr/bin/env bash
# Prerequisite checks for telemetry. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows which ... |
23df3ac765fe87fcbeef171cd5c457a3a843bf95b9e7ac1b4e155fadb255d4a7 | Shell | 2,120 | 50 | #!/usr/bin/env bash
# Prerequisite checks for world-data. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows which... |
d78b4b55933c1d1730a3fa37e22f238277740777aadd863112edadfaddbe2640 | Shell | 2,120 | 50 | #!/usr/bin/env bash
# Prerequisite checks for debug-draw. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows which... |
ecef6b5c781b2398d5c02d81cf7f4ed5ace43d62364658acaad006e2176c7880 | Shell | 2,121 | 50 | #!/usr/bin/env bash
# Prerequisite checks for read-sensor. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows whic... |
3b274599a8a0190b67c83dff4c660b45d0d5c5e24d9b3e6ee2d80fab7ef8dff2 | Shell | 2,122 | 70 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
25ba8170cac71a99c5ffd6f95c4202d628cf6cb1d8245596547c4da0baa551ac | Shell | 2,123 | 50 | #!/usr/bin/env bash
# Prerequisite checks for create-sensor. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows wh... |
57e0718b07695d60aa9d5a1263362465a71deeec62b47af0dc2cf2efc2e5877d | Shell | 2,123 | 50 | #!/usr/bin/env bash
# Prerequisite checks for map-waypoints. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows wh... |
626bd0dcd67b44bf2c7e42a2349b88792058624b48d2388ebe23163a421ce02b | Shell | 2,123 | 50 | #!/usr/bin/env bash
# Prerequisite checks for debug-navmesh. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows wh... |
90f8c8afcdc92966727fd79c028fa2054eddc684fd1b363a66d0ff1d2729fefc | Shell | 2,123 | 50 | #!/usr/bin/env bash
# Prerequisite checks for spawn-walkers. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows wh... |
e296d5232ccaa34160a90d49dee5f3525a051f42c5cec84e59a4ddc87ce4ed95 | Shell | 2,124 | 50 | #!/usr/bin/env bash
# Prerequisite checks for control-lights. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows w... |
e81a8a7f03071110427333feeb58f7aa959e0f6ba335f6a2cfada8b7615b3d10 | Shell | 2,124 | 86 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
eafde803ac87bc59d53bb62ec613cb57207022838f7e88c3e4847fd315134d84 | Shell | 2,124 | 50 | #!/usr/bin/env bash
# Prerequisite checks for spawn-vehicles. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows w... |
fdb95a8e847744fa7c5c838aaa8b67e63ae0540e658bf47c63e3bc166d3954af | Shell | 2,124 | 50 | #!/usr/bin/env bash
# Prerequisite checks for bounding-boxes. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows w... |
05436368850bc9abb230404c76998fca97db22115f444f2d9e8dea3052464889 | Shell | 2,125 | 74 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
66299b0566c6e3a54b501fff5f1ee3200e044a4a5821e01ee47732a8d8e3466d | Shell | 2,125 | 50 | #!/usr/bin/env bash
# Prerequisite checks for control-vehicle. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows ... |
df3e17b8c1f4ddf2291804a066be782df9a578e2101915d057ed6bf0ce49144d | Shell | 2,125 | 50 | #!/usr/bin/env bash
# Prerequisite checks for control-traffic. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows ... |
ec7cc8267548c3d4f7a61e0a474e0e12e40718dc9c1207a9f649d84ae76fb892 | Shell | 2,125 | 50 | #!/usr/bin/env bash
# Prerequisite checks for query-recording. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows ... |
a0703b05029688077de1ace9745d8a2e7ebb3a80fb69759a5ce835e8d927e506 | Shell | 2,126 | 50 | #!/usr/bin/env bash
# Prerequisite checks for replay-recording. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# shows... |
071282e5d0be8601175f67b8f43558e11dd97f9e931b568f8d8d23963f9227e4 | Shell | 2,127 | 50 | #!/usr/bin/env bash
# Prerequisite checks for record-simulation. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# show... |
decb17bdb9475d2baa1f1a8281d9604904f9ea7c4948311c35282c46afcbe959 | Shell | 2,127 | 50 | #!/usr/bin/env bash
# Prerequisite checks for control-spectator. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# show... |
b564f942ab5bbde2519ea28269f3f2f6f1f77c219ffbbad4014dedaccfd0d9fc | Shell | 2,128 | 50 | #!/usr/bin/env bash
# Prerequisite checks for toggle-env-objects. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
# sho... |
deab66d1cdc620c8384b1b1b70733c31387c8d95b99bf6c2aa52ed428a203b6a | Shell | 2,132 | 50 | #!/usr/bin/env bash
# Prerequisite checks for control-traffic-lights. Read-only, no sudo. Fast probe so
# the MCP check_prerequisites(name) tool never hangs.
# Exits non-zero ONLY on hard blockers: no `carla` module, or no reachable server.
# On-camera banner: every skill run announces itself, so a terminal recording
#... |
9ad2f038c4c5c59228786d83620f82ea3fdb5e94d79a6c7c6ed888b741acfa4c | Shell | 2,134 | 77 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
d5582a5107903c8bae5f66c53945ac12a011996e923fb89dda27db50e206d2a0 | Shell | 2,135 | 62 | #!/usr/bin/env bash
# this is the standard "tdnn" system, built in nnet3; it's what we use to
# call multi-splice.
# At this script level we don't support not running on GPU, as it would be painfully slow.
# If you want to run without GPU you'd have to call train_tdnn.sh with --gpu false,
# --num-threads 16 and --min... |
0d72af2502d9bc5180532a931a249f0cac6d1f0841df21dabc1934d31fa80dd3 | Shell | 2,139 | 60 | #!/bin/bash
#SBATCH --time="05:59:00"
#SBATCH --memory="32G"
# java -jar ../../../depict2/Depict2-2.0.51-SNAPSHOT/Depict2.jar \
#--mode CORE_GENE_AUC \
#-g educational_attainment_2018_30038396_hg19_genePvalues \
#-o auc.txt \
#-pd hpo=../../../reference_datasets/human_b37/hpo/ALL_SOURCES_ALL_FREQUENCIES_phenotype_to_g... |
639c549db39bc5a915f5f710ece1f099767a378a78f9ced827155bf2b8715ef8 | Shell | 2,141 | 54 | #!/bin/bash -u
. ./cmd.sh
. ./path.sh
# Path to Fisher transcripts LM interpolation (if not defined only AMI transcript LM is built),
case $(hostname -d) in
fit.vutbr.cz) FISHER_TRANS=/mnt/matylda2/data/FISHER/fe_03_p1_tran ;; # BUT,
clsp.jhu.edu) FISHER_TRANS=/export/corpora4/ami/fisher_trans/part1 ;; # JHU,
c... |
02fc325a9d63dac5a7b6571f057e8ef84fbba77bc4a5e7449498074985e4acd0 | Shell | 2,142 | 79 | #!/usr/bin/env bash
# Copyright 2012 Arnab Ghoshal
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# THIS CODE IS PROVIDED *AS IS* BASIS, WI... |
c4c304bcc26aa532befddc79b1ebd7b7e0981157a9279319b580ab1c2584c34c | Shell | 2,142 | 62 | #!/bin/bash
# Copyright 2014 QCRI (author: Ahmed Ali)
# Apache 2.0
. ./path.sh
. ./cmd.sh ## You'll want to change cmd.sh to something that will work on your system.
## This relates to the queue.
nDecodeJobs=40
nDecodeJobs=120
#train DNN
mfcc_fmllr_dir=mfcc_fmllr
baseDir=exp/tri3b
alignDir=exp/tri3b_ali
... |
d002022ff54588645c46bc2af9cb63244b4bdfdf0d7a4385007908d183c02b07 | Shell | 2,144 | 68 | #!/usr/bin/env bash
# Copyright 2017 Xingyu Na
# Apache 2.0
. ./path.sh || exit 1;
if [ $# != 2 ]; then
echo "Usage: $0 <audio-path> <text-path>"
echo " $0 /export/a05/xna/data/data_aishell/wav /export/a05/xna/data/data_aishell/transcript"
exit 1;
fi
aishell_audio_dir=$1
aishell_text=$2/aishell_transcript_v0.... |
3253350616b758f965e0f20421a0e38e4b161442be96c155bbeccc20c94c884e | Shell | 2,145 | 82 | #!/usr/bin/env bash
# shellcheck source=../utils.sh
source $( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )/../utils.sh
# Check if there is input
[[ ( $# -eq 0 ) ]] && displayhelp $0 1
# Preparing the default values for variables
aref=none
tmp=.
### print input
printline=$( basename -- $0 )
echo "${printline}"... |
6b9955d00266026b022e2bcff55e2eff645b024692cf57391be4c162c9cfd5ed | Shell | 2,146 | 82 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
c0d742ba58db03a8c153aed55520d2ac423df645b38d7e29e7e50ba6af03a637 | Shell | 2,147 | 49 | #!/usr/bin/env bash
# Self-contained environment for the add-ros-message-type skill.
# Source before the other scripts: source env.sh
#
# This skill edits C++ sources inside a CARLA checkout and verifies them with the
# LibCarla test suite. It never runs a simulator.
#
# CARLA_UE4_ROOT the carla checkout whose LibC... |
a16cc0b0dcaa2bafc1d114ce72486e7cd7b3eb962cf9ddd955d42eec1774018b | Shell | 2,152 | 68 | #!/usr/bin/env bash
# Copyright 2015 Brno University of Technology (Author: Karel Vesely)
# Apache 2.0
# This example script trains a LSTM network on FBANK features.
# The LSTM code comes from Yiayu DU, and Wei Li, thanks!
. ./cmd.sh
. ./path.sh
dev=data_fbank/dev
train=data_fbank/train
dev_original=data/dev
trai... |
87ebbeaf217471b40b74564bdc89653bc1fd7bc03ca8d77a2800324f3ccf4361 | Shell | 2,154 | 70 | #!/usr/bin/env bash
# Report WER for reports and conversational
# Copyright 2014 QCRI (author: Ahmed Ali)
# Apache 2.0
if [ $# -ne 1 ]; then
echo "Arguments should be the gale folder, see ../run.sh for example."
exit 1;
fi
[ -f ./path.sh ] && . ./path.sh
galeFolder=$(utils/make_absolute.sh $1)
symtab=./data/... |
4b92c62adb42b991c9f9829a2262fe2075b1341a8976bc8e0b8b6066a04851c9 | Shell | 2,155 | 65 | #!/bin/bash
# Copyright 2020-2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
b27aa0635dc0bb5913eaec94a6dd8205d9c1b6a99535d3968e0a267e0ebff3b3 | Shell | 2,155 | 49 | OUTPUTDIR="/groups/umcg-bios/tmp03/projects/genotypes_BIOS_LLDeep_Diagnostics_merged/results/filterGQ20_callRate50_noRnaEditSites/"
JOBDIR="/groups/umcg-bios/tmp03/projects/genotypes_BIOS_LLDeep_Diagnostics_merged/jobs/filterRnaEditSites"
for CHR in {1..22}
do
echo "#!/bin/bash
#SBATCH --job-name=FilterRnaEditSites_... |
c911f3edab26ec90ce4c0788d6435ee0720c449fb44297d771401d2c48a2b118 | Shell | 2,155 | 60 | #!/usr/bin/env bash
# Copyright 2013 Johns Hopkins University (authors: Guoguo Chen, Yenda Trmal)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2... |
3a9e8f0d533d519b39c612c896dfbf18cdeea81831a67dbbf7c267708ef79a16 | Shell | 2,157 | 53 | #!/bin/bash -u
# Copyright 2015 (c) Johns Hopkins University (Jan Trmal <jtrmal@gmail.com>)
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#... |
a7aa9b21c6d3efa8138a9c5c00336b7d6b1d184e5b46ce6e9321f0cf3ae8dd5f | Shell | 2,158 | 68 | #!/bin/bash
# Download libvbz_hdf_plugin.so to $HOME/.local/lib
# Check https://github.com/nanoporetech/vbz_compression/releases
# User may have to change the $ONT_VBZ_VERSION and $ONT_VBZ_FILE.
# User may have to change the $PLUGIN_PATH
# Make sure to export the $PLUGIN_PATH using export HDF5_PLUGIN_PATH=$PLUGIN_PATH... |
554357603a33f23a284a7659f850f851f2969c8c4f58c0eaf853cd280c8479cb | Shell | 2,163 | 74 | #!/usr/bin/env bash
# Copyright 2012 Johns Hopkins University (Author: Guoguo Chen, Yenda Trmal)
# Apache 2.0.
# Begin configuration section.
# case_insensitive=true
extraid=
kwlist=
f4de_prefix=
# End configuration section.
help_message="$0: score the kwslist using the F4DE scorer from NIST
Example:
$0 [addi... |
9d240c43b4f6d28fd9bb248b0e5041f0ab4f6a95df169b2eebbdc1d7fe1e1f98 | Shell | 2,164 | 63 | #!/usr/bin/env bash
# To be run from one directory above this script.
. ./path.sh
text=data/local/train/text
lexicon=data/local/dict/lexicon.txt
for f in "$text" "$lexicon"; do
[ ! -f $x ] && echo "$0: No such file $f" && exit 1;
done
# This script takes no arguments. It assumes you have already run
# aishell_d... |
a8b797ad7625045a4eea7bb00e068a37e58525716cce5a29747748d81a23c132 | Shell | 2,170 | 60 | # Set environment variables.
export MKL_NUM_THREADS=2
export NUMEXPR_NUM_THREADS=2
export OMP_NUM_THREADS=2
# Define constants.
SERMODS=../../data/models/5HT/5HT_AugmentedGIFs.lmod
GABAMODS=../../data/models/GABA/GABA_iGIF_NPs.lmod
REPEATS=20
PROCESSES=10
wave_input=../../data/simulations/GIF_network/wave_input_basel... |
6cc56d9174cb8db92f5da265b2cdd678924e03668bc5c24f7e4877af6de13b20 | Shell | 2,172 | 64 | ##########################################################################################
## UGER job submission script
## run global MAGMA analysis for each IGF2BP target list
## Step 2 of 2: run gene and gene set annalysis steps for each list and each trait
## for GWAS traits: ASD ADHD BIP MDD SCZ height
##
## Autho... |
9dc32381dfec8f6f47e4df2c0c95bb3f9f390f793bb4ffc2f138af3ea85b100d | Shell | 2,172 | 81 | #!/usr/bin/env bash
# Copyright 2015 University of Sheffield (Author: Ning Ma)
# Apache 2.0.
#
# This script prepares the data/ directory for the CHiME/GRID corpus
. ./config.sh # Needed for REC_ROOT and WAV_ROOT
# Setup relevant folders
data="$REC_ROOT/data"
locdata="$data/local"
mkdir -p "$locdata"
utils="utils"
... |
9bd5bb07862d6d3f9fb790f35cf7b86030cb4caa81bb96d9d20515f23eaf992e | Shell | 2,173 | 73 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
39ac984d8a2dbbedb366318335d04be02830767feef7e300ef76713bb7245be8 | Shell | 2,176 | 53 | #!/bin/bash
set -e
. ./path.sh
stage=0
aidatatang_url=www.openslr.org/resources/62
aishell_url=www.openslr.org/resources/33
magicdata_url=www.openslr.org/resources/68
primewords_url=www.openslr.org/resources/47
stcmds_url=www.openslr.org/resources/38
thchs_url=www.openslr.org/resources/18
. ./utils/parse_options.sh
... |
6cc2a9c5512321bc7dee60ba205e109ef22eb130b9c005833bb4cf0194b3fa94 | Shell | 2,182 | 63 | #!/bin/bash
# Create a signed list of SHA-256 checksums for the files of a LAMMPS release
#
# The checksums are not computed locally, but taken from the SHA-256 digests
# that GitHub computes for each uploaded file, so that they belong to what was
# actually uploaded and use the file names of the release page.
# The li... |
76cc27abacc16aa29c65950a86a0692524f88daf7907e30822538834c7db49bf | Shell | 2,182 | 74 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
b33dbed3e05fe890f0a3316a07cba872b1d8b88aae1dd23529f89bdfc55e66c0 | Shell | 2,189 | 86 | #!/bin/bash
##
## Identify FASTQ contents using Centrifuge
##
# script filename
script_path="${BASH_SOURCE[0]}"
script_name=$(basename "$script_path")
route_name=${script_name/%.sh/}
echo -e "\n ========== ROUTE: $route_name ========== \n" >&2
# check for correct number of arguments
if [ ! $# == 2 ] ; then
echo -... |
661d83be112bf883272c637cab96a8b2500b66cf3745db56c56bcafda98e7b19 | Shell | 2,197 | 71 | #!/usr/bin/env bash
# Copyright (c) 2015, Johns Hopkins University (Yenda Trmal <jtrmal@gmail.com>)
# License: Apache 2.0
# Begin configuration section.
cmd=run.pl
# End configuration section
. ./utils/parse_options.sh
if [ -f ./path.sh ]; then . ./path.sh; fi
if [ $# != 4 ]; then
echo "This script takes an ali di... |
ad18687c922f7e4b320fa6083fb6a1ee489c084fbb4f27fc3f0657758cffd4f6 | Shell | 2,197 | 61 | #!/usr/bin/env bash
# Copyright Johns Hopkins University
# 2019 Fei Wu
# Run VTLN. This will be run if the vtln option
# is set to be true in run.sh.
set -eu
stage=0
featdir=mfcc/vtln
data=data
mdl=exp/tri3
mdl_vtln=${mdl}_vtln
vtln_lda=exp/tri4
vtln_sat=exp/tri5
. ./cmd.sh
. ./utils/parse_options.sh
mkdir -p $... |
409c9217feea96fece19459c05d470dc58d9da7e79d678056a40baa8ad58d17b | Shell | 2,199 | 84 | #!/usr/bin/env bash
# Copyright 2012 Johns Hopkins University (Author: Guoguo Chen, Yenda Trmal)
# Apache 2.0.
# Begin configuration section.
# case_insensitive=true
extraid=
kwlist=
ecf=
rttm=
f4de_prefix=
# End configuration section.
help_message="$0: score the kwslist using the F4DE scorer from NIST
Example:
... |
7fc60b264d1999092be1dc48586342df7c369c97306a2d5a351aa12cf10f511e | Shell | 2,202 | 68 | #!/usr/bin/env bash
# Copyright 2017 Xingyu Na
# Apache 2.0
. ./path.sh || exit 1;
if [ $# != 2 ]; then
echo "Usage: $0 <corpus-path> <text-path>"
echo " $0 /export/a05/xna/data/data_aidatatang_200zh/corpus /export/a05/xna/data/data_aidatatang_200zh/transcript"
exit 1;
fi
aidatatang_audio_dir=$1
aidatatang_te... |
173566b40d81fdb7a54cecd49b8385ed78c6cd195ec5eeb2a0fffd46d8067eb7 | Shell | 2,207 | 65 | #!/bin/bash
# Copyright 2020 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
ef36b49a50c9d63c81f28cbc5e11e649a98a680aa6aefa7f9e740197d6efc6cc | Shell | 2,207 | 53 | #!/usr/bin/env bash
# Self-contained environment for the check-feature-support skill.
# Source before the other scripts: source env.sh
#
# This skill answers "is feature X usable here, and does this collection have a
# vetted procedure for it". It builds nothing, launches nothing and changes
# nothing, so it needs no ... |
2620718dfa9724dd7c59d253dc751c0d5dcfd17c1ac47753d378e8e2375b134a | Shell | 2,208 | 58 |
echo "test 1, no norms"
norms=("NONE" "VC")
files=('/Users/muhammad/Desktop/hg38/GM12878_30.hic')
#'https://www.encodeproject.org/files/ENCFF757POS/@@download/ENCFF757POS.hic')
#
chroms=("chr2" "chr5")
mtypes=("BP" "MATRIX")
for mtype in "${mtypes[@]}"
do
for chrom in "${chroms[@]}"
do
for norm in "${norms[@]}"... |
4a0b077f15cfc0c24dba979fc87d500a2bd3f77e692b0039da8f32259b283378 | Shell | 2,213 | 71 | #!/bin/bash
# Copyright 2012 Johns Hopkins University (Author: Yenda Trmal)
# Apache 2.0.
#Begin configuration
ignore_missing_txt=false #If the reference transcript txt is missing, \
#shall we ignore it or treat it as a fatal error?
#End configuration
echo "$0 $@" # Print the command lin... |
24b8bc1078ac43fd7006695734df8979f6c143ed93e8c4a6f2f0785df14c9d42 | Shell | 2,216 | 61 | #!/usr/bin/env bash
# Copyright 2014 (author: Ahmed Ali, Hainan Xu)
# Copyright 2016 Johns Hopkins Univeersity (author: Jan "Yenda" Trmal)
# Apache 2.0
if [ $# -ne 1 ]; then
echo "Arguments should be the <gale folder>"; exit 1
fi
set -e -o pipefail
#data will data/local
galeData=$(utils/make_absolute.sh $1)
mkdi... |
53fd1528709ee25877c6b08a0c66ca47b38294bcfe4ee80f148e6788d702e319 | Shell | 2,218 | 58 | #!/usr/bin/env bash
# Copyright 2021 The Kubeflow Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... |
7afa437b475081aa763c98c088dd98fbde1df0353abda242ecc90501411195bb | Shell | 2,220 | 66 | #!/usr/bin/env bash
# Copyright 2018 AIShell-Foundation(Authors:Jiayu DU, Xingyu NA, Bengu WU, Hao ZHENG)
# 2018 Beijing Shell Shell Tech. Co. Ltd. (Author: Hui BU)
# Apache 2.0
# transform raw AISHELL-2 data to kaldi format
. ./path.sh || exit 1;
tmp=
dir=
if [ $# != 4 ]; then
echo "Usage: $0 <corpus-d... |
26e182cae0c6b4f22fececbb1dfc34c9db300b9a652bf8b01411778f49465c0b | Shell | 2,223 | 61 | #MOLGENIS nodes=1 ppn=1 mem=8gb walltime=06:00:00
### variables to help adding to database (have to use weave)
#string internalId
#string sampleName
#string project
###
#string sortedBamDir
#string stage
#string checkStage
#string picardVersion
#string iolibVersion
#string sortedBamDir
#string cramFileDir
#string onek... |
f85df70bac61672d129ac4322eb8b0618d3d1d5ffd88b7c95d54855cc64d3fc5 | Shell | 2,224 | 90 | #!/bin/bash
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
735ec2db16a4d46c8953014cc2b1e7a413aeeaf09a69cb940aa2e57b4a053bed | Shell | 2,226 | 93 | #!/bin/bash
# Copyright 2022 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.