pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7swo | H | L | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN/Immune System | 11/20/21 | C98C7 Fab in complex with SARS-CoV-2 Spike 6P (RBD local reconstruction) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Windsor, I.W., Tong, P., Wesemann, D.R., Harrison, S.C. | 4.1 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7tzh | C | c | 0 | D | protein | null | lymphocyte activation gene 3 protein | IMMUNOSUPPRESSANT | 02/15/22 | LAG3 ectodomain structure reveals functional interfaces for ligand and antibody recognition | HOMO SAPIENS | homo sapiens | null | homo sapiens | Ming, Q., Tran, T.H., Luca, V.C. | 2.43 | X-RAY DIFFRACTION | 0.255 | 0.212 | true | true | unknown | unknown | unknown | null | null | null | null | null |
4rrp | I | C | 0 | O | protein | null | antigen asf1p | IMMUNE SYSTEM | 11/06/14 | Crystal Structure of the Fab complexed with antigen Asf1p, Northeast Structural Genomics Consortium (NESG) Target PdR16 | HOMO SAPIENS; SACCHAROMYCES CEREVISIAE | homo sapiens | homo sapiens | saccharomyces cerevisiae | Kuzin, A., Lew, S., Seetharaman, J., Mao, L., Xiao, R., Oconnell, P.T., Maglaqui, M., Bailey, L., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS), Northeast Structural Genomics Consortium (NESG) | 2.79 | X-RAY DIFFRACTION | 0.253 | 0.183 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2cmr | H | L | 0 | A | protein | null | transmembrane glycoprotein | IMMUNE SYSTEM | 05/11/06 | Crystal structure of the HIV-1 neutralizing antibody D5 Fab bound to the gp41 inner-core mimetic 5-helix | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Luftig, M.A., Mattu, M., DiGiovine, P., Geleziunas, R., Hrin, R., Barbato, G., Bianchi, E., Miller, M.D., Pessi, A., Carfi, A. | 2.0 | X-RAY DIFFRACTION | 0.258 | 0.209 | false | true | IGHV1 | IGKV1 | Kappa | 0 | -14.04 | SPR | 25 | 16862157 |
6uta | A | B | 0 | C | protein | null | env | VIRAL PROTEIN | 10/29/19 | Crystal structure of Z004 iGL Fab in complex with ZIKV EDIII | HOMO SAPIENS; ZIKA VIRUS ZIKV/H. SAPIENS/FRENCHPOLYNESIA/10087PF/2013 | homo sapiens | homo sapiens | zika virus zikv/h.sapiens/frenchpolynesia/10087pf/2013 | Esswein, S.R., Gristick, H.B., Keeffe, J.R., Bjorkman, P.J. | 3.1 | X-RAY DIFFRACTION | 0.291 | 0.274 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6x5b | O | M | 0 | J | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 05/25/20 | Symmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with small molecule GO52 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Ozorowski, G., Torres, J.L., Ward, A.B. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7s11 | K | O | 0 | F | protein | null | t-cell surface protein tactile | IMMUNE SYSTEM | 08/31/21 | Crystal structure of Fab in complex with mouse CD96 monomer | MUS MUSCULUS; RATTUS | rattus | rattus | mus musculus | Lee, P.S., Chau, B., Strop, P. | 2.58 | X-RAY DIFFRACTION | 0.279 | 0.226 | false | true | IGHV2 | IGLV1 | Lambda | null | null | null | null | null |
5b8c | B | A | 0 | C | protein | null | programmed cell death protein 1 | IMMUNE SYSTEM | 06/14/16 | High resolution structure of the human PD-1 in complex with pembrolizumab Fv | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Horita, S., Shimamura, T., Iwata, S., Nomura, N. | 2.146 | X-RAY DIFFRACTION | 0.226 | 0.184 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4jzj | H | L | 0 | C | protein | null | interleukin-3 receptor subunit alpha | CYTOKINE RECEPTOR/IMMUNE SYSTEM | 04/03/13 | Crystal Structure of Receptor-Fab Complex | HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Broughton, S.E., Parker, M.W. | 2.801 | X-RAY DIFFRACTION | 0.244 | 0.185 | false | false | IGHV5 | IGKV4 | Kappa | 0 | -11.45684 | SPR | null | TBD |
7e8c | H | L | 0 | A | protein | null | 368-2 h | VIRAL PROTEIN | 03/01/21 | SARS-CoV-2 S-6P in complex with 9 Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Du, S., Xiao, J., Zhang, Z. | 3.16 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
5mu2 | O | P | 0 | W | peptide | null | synthetic peptide containing the cii583-591 epitope ofcollagen type ii | IMMUNE SYSTEM | 01/12/17 | ACC1 Fab fragment in complex with CII583-591 (CG10) | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | mus musculus | Dobritzsch, D., Holmdahl, R., Ge, C. | 2.7 | X-RAY DIFFRACTION | 0.228 | 0.206 | false | false | IGHV6 | IGKV3 | Kappa | null | null | null | null | null |
7rsn | H | L | 0 | A | protein | null | amc018 gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 08/11/21 | AMC018 SOSIP.v4.2 in complex with PGV04 Fab | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Cottrell, C.A., Ward, A.B. | 3.49 | ELECTRON MICROSCOPY | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
6crq | J | L | 0 | F | protein | null | envelope glycoprotein gp160 | VIRAL PROTEIN | 03/19/18 | Glutaraldehyde-treated BG505 SOSIP.664 Env in complex with PGV04 Fab | HUMAN IMMUNODEFICIENCY VIRUS 1 | human immunodeficiency virus 1 | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Pallesen, J., Ward, A.B. | 4.2 | ELECTRON MICROSCOPY | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
1dee | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 11/15/99 | CRYSTAL STRUCTURE AT 2.7A RESOLUTION OF A COMPLEX BETWEEN A STAPHYLOCOCCUS AUREUS DOMAIN AND A FAB FRAGMENT OF A HUMAN IGM ANTIBODY | STAPHYLOCOCCUS AUREUS; HOMO SAPIENS | homo sapiens | homo sapiens | null | Graille, M., Stura, E.A., Corper, A.L., Sutton, B.J., Taussig, M.J., Charbonnier, J.B., Silverman, G.J. | 2.7 | X-RAY DIFFRACTION | 0.281 | 0.217 | false | false | IGHV3 | IGKV1 | Kappa | 0 | -8.728352 | Unknown | null | TBD |
7chy | H | L | 0 | I | protein | null | interleukin-1 beta | IMMUNOSUPPRESSANT | 07/06/20 | Crystal Structure Of Human Il-1beta In Complex With Antibody Binding Fragment Of IgG26 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Lee, C.C., Wang, A.H.J., Kuo, W.C. | 2.65 | X-RAY DIFFRACTION | 0.254 | 0.200 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6ugs | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 09/26/19 | Crystal structure of the Fab fragment of PF06438179/GP1111 an infliximab biosimilar in a C-centered orthorhombic crystal form, Lot A | HOMO SAPIENS | homo sapiens | homo sapiens | null | Lerch, T.F., Sharpe, P., Mayclin, S.J., Edwards, T.E., Polleck, S., Rouse, J.C., Conlan, H. | 1.95 | X-RAY DIFFRACTION | 0.198 | 0.159 | false | true | IGHV6 | IGKV5 | Kappa | null | null | null | null | null |
3t3p | E | F | 0 | C | protein | null | integrin alpha-iib | CELL ADHESION | 07/25/11 | A Novel High Affinity Integrin alphaIIbbeta3 Receptor Antagonist That Unexpectedly Displaces Mg2+ from the beta3 MIDAS | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Zhu, J., Zhu, J., Springer, T.A. | 2.2 | X-RAY DIFFRACTION | 0.220 | 0.189 | false | true | IGHV14 | IGKV14 | Kappa | null | null | null | null | null |
6y1r | D | null | 0 | null | null | null | null | IMMUNE SYSTEM | 02/13/20 | Nb22-LBT | LAMA GLAMA | lama glama | null | null | Pompidor, G., Zimmermann, S., Loew, C., Schneider, T. | 1.85 | X-RAY DIFFRACTION | 0.235 | 0.204 | false | true | IGHV1 | null | null | null | null | null | null | null |
6olp | H | L | 0 | F | E | protein | protein | NA | NA | envelope glycoprotein gp41 | envelope glycoprotein gp120 | Viral Protein/IMMUNE SYSTEM | 04/16/19 | Full length HIV-1 Env AMC011 in complex with PGT151 Fab | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Rantalainen, K., Cottrell, C.A. | 4.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
4xmm | H | L | 0 | D | C | protein | protein | NA | NA | nucleoporin nup85 | nucleoporin seh1 | Transport Protein/Immune System | 01/14/15 | Structure of the yeast coat nucleoporin complex, space group C2 | SACCHAROMYCES CEREVISIAE S288C; HOMO SAPIENS | homo sapiens | homo sapiens | saccharomyces cerevisiae s288c | saccharomyces cerevisiae s288c | Stuwe, T., Correia, A.R., Lin, D.H., Paduch, M., Lu, V.T., Kossiakoff, A.A., Hoelz, A. | 7.384 | X-RAY DIFFRACTION | 0.353 | 0.330 | false | true | IGHV3 | IGKV1D | Kappa | null | null | null | null | null |
5grw | A | a | 0 | null | null | null | null | IMMUNE SYSTEM | 08/12/16 | Crystal structure of homo-specific diabody | HOMO SAPIENS | homo sapiens | null | null | Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O. | 2.8 | X-RAY DIFFRACTION | 0.182 | 0.182 | true | true | unknown | unknown | unknown | null | null | null | null | null |
6okp | Q | R | 0 | F | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 04/14/19 | B41 SOSIP.664 in complex with the silent-face antibody SF12 and V3-targeting antibody 10-1074 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Barnes, C.O., Bjorkman, P.J. | 3.28 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGKV3 | Kappa | null | null | null | null | null |
6o41 | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 02/27/19 | Crystal structure of the unbound PGZL1 germline Fab fragment (PGZL1_gVmDmJ) | HOMO SAPIENS; STREPTOCOCCUS SP. GROUP G | homo sapiens | homo sapiens | null | Irimia, A., Wilson, I.A. | 2.465 | X-RAY DIFFRACTION | 0.219 | 0.169 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
5f6h | I | J | 0 | null | null | null | null | IMMUNE SYSTEM | 12/06/15 | Crystal Structure of Tier 2 Neutralizing Antibody DH427 from a Rhesus Macaque | HOMO SAPIENS | homo sapiens | homo sapiens | null | Fera, D., Harrison, S.C. | 2.66 | X-RAY DIFFRACTION | 0.262 | 0.230 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
1bj1 | H | L | 0 | W | protein | null | vascular endothelial growth factor | COMPLEX (ANTIBODY/ANTIGEN) | 06/30/98 | VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH A NEUTRALIZING ANTIBODY | MUS MUSCULUS; HOMO SAPIENS | mus musculus | mus musculus | homo sapiens | Muller, Y.A., Christinger, H.W., De Vos, A.M. | 2.4 | X-RAY DIFFRACTION | 0.266 | 0.196 | false | true | IGHV7 | IGKV1 | Kappa | 0 | -11.55 | SPR | 25 | 9753694 |
4tnw | F | N | 0 | B | protein | null | avermectin-sensitive glutamate-gated chloride channel gluclalpha | TRANSPORT PROTEIN/IMMUNE SYSTEM | 06/05/14 | C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab and POPC in a lipid-modulated conformation | CAENORHABDITIS ELEGANS; MUS MUSCULUS | mus musculus | mus musculus | caenorhabditis elegans | Althoff, T., Hibbs, R.E., Banerjee, S., Gouaux, E. | 3.2 | X-RAY DIFFRACTION | 0.251 | 0.227 | false | false | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
3bqu | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 12/20/07 | Crystal Structure of the 2F5 Fab'-3H6 Fab Complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | null | Bryson, S., Julien, J.-P., Isenman, D.E., Kunert, R., Katinger, H., Pai, E.F. | 3.0 | X-RAY DIFFRACTION | 0.295 | 0.276 | false | false | IGHV1 | IGKV17 | Kappa | null | null | null | null | null |
5h8o | A | null | 0 | B | protein | null | apoptosis-associated speck-like protein containing a card | IMMUNE SYSTEM | 12/23/15 | Crystal structure of an ASC-binding nanobody in complex with the CARD domain of ASC | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Lu, A., Schmidt, F.I., Ruan, J., Tang, C., Wu, H., Ploegh, H.L. | 4.206 | X-RAY DIFFRACTION | 0.356 | 0.300 | false | true | IGHV1 | null | null | null | null | null | null | null |
7v3h | G | H | 0 | A | protein | null | envelope protein e | VIRUS/IMMUNE SYSTEM | 08/10/21 | DENV2_NGC_Fab_C10 28degrees (3Fab:3E) | DENGUE VIRUS TYPE 2 (STRAIN THAILAND/NGS-C/1944); HOMO SAPIENS | homo sapiens | homo sapiens | dengue virus type 2 (strain thailand/ngs-c/1944) | Shu, B., Zhang, S., Victor, A.K., Ng, T.S., Lok, S.M. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
3j7e | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 06/23/14 | Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments | MUS MUSCULUS | mus musculus | mus musculus | null | Lee, H., Brendle, S.A., Bywaters, S.M., Christensen, N.D., Hafenstein, S. | 13.6 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
5vl2 | C | null | 0 | C | Hapten | 9EG | N-(4-chlorophenyl)-N'-(3,4-dichlorophenyl)urea | UNKNOWN FUNCTION | 04/24/17 | The hapten triclocarban bound to the single domain camelid nanobody VHH T4 | LAMA GLAMA | lama glama | null | lama glama | Tabares-da Rosa, S., Gonzalez-Sapienza, G., Wilson, D.K. | 1.9 | X-RAY DIFFRACTION | 0.263 | 0.219 | false | true | IGHV1 | null | null | null | null | null | null | null |
5t1l | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 08/19/16 | Cetuximab Fab in complex with CQA(Ph)2DLSTRRLKC peptide | MUS MUSCULUS, HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Bzymek, K.P., Williams, J.C. | 2.48 | X-RAY DIFFRACTION | 0.204 | 0.158 | false | true | IGHV2 | IGKV5 | Kappa | 0 | -9.031008 | Unknown | null | TBD |
3nfp | A | B | 0 | K | protein | null | interleukin-2 receptor subunit alpha | Immune system/Cytokine | 06/10/10 | Crystal structure of the Fab fragment of therapeutic antibody daclizumab in complex with IL-2Ra (CD25) ectodomain | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Yang, H., Wang, J., Du, J., Zhong, C., Guo, Y., Ding, J. | 2.86 | X-RAY DIFFRACTION | 0.301 | 0.253 | false | true | IGHV1 | IGKV1 | Kappa | 0 | -13.05 | SPR | 25 | 20820193 |
2a6k | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 07/03/05 | Crystal Structure Analysis of the germline antibody 36-65 Fab in complex with the dodecapeptide SLGDNLTNHNLR | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Sethi, D.K., Agarwal, A., Manivel, V., Rao, K.V., Salunke, D.M. | 3.0 | X-RAY DIFFRACTION | 0.264 | 0.245 | false | false | IGHV1 | IGKV10 | Kappa | 0 | -9.110123 | Unknown | null | TBD |
1za6 | F | E | 0 | null | null | null | null | IMMUNE SYSTEM | 04/05/05 | The structure of an antitumor CH2-domain-deleted humanized antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Larson, S.B., Day, J.S., Glaser, S., Braslawsky, G., McPherson, A. | 2.8 | X-RAY DIFFRACTION | 0.296 | 0.246 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
5j57 | B | null | 0 | A | protein | null | ricin | HYDROLASE/IMMUNE SYSTEM | 04/01/16 | V5E1-RTA complex | RICINUS COMMUNIS; VICUGNA PACOS | vicugna pacos | null | ricinus communis | Rudolph, M.J. | 1.7 | X-RAY DIFFRACTION | 0.190 | 0.163 | false | true | IGHV1 | null | null | 0 | -14.596007 | SPR | null | TBD |
7dm2 | H | L | 0 | A | protein | null | phosphate-binding protein psts 1 | TRANSPORT PROTEIN/IMMUNE SYSTEM | 12/01/20 | crystal structure of the M. tuberculosis phosphate ABC transport receptor PstS-1 in complex with Fab p4-170 | MYCOBACTERIUM TUBERCULOSIS H37RV; HOMO SAPIENS | homo sapiens | homo sapiens | mycobacterium tuberculosis h37rv | Ma, B., Freund, N., Xiang, Y. | 2.4 | X-RAY DIFFRACTION | 0.216 | 0.170 | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
5bk3 | C | D | 0 | D | carbohydrate | NAG | polysaccharide | IMMUNE SYSTEM | 09/12/17 | Crystal structure of the neutralizing anti-circumsporozoite protein 580 antibody | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Scally, S.W., Bosch, A., Triller, G., Wardemann, H., Julien, J.P. | 2.8 | X-RAY DIFFRACTION | 0.231 | 0.190 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
6itp | A | null | 0 | A | Hapten | HCY | (11ALPHA,14BETA)-11,17,21-TRIHYDROXYPREGN-4-ENE-3,20-DIONE | IMMUNE SYSTEM | 11/24/18 | Crystal structure of cortisol complexed with its nanobody at pH 3.5 | CAMELUS BACTRIANUS | camelus bactrianus | null | camelus bactrianus | Ding, Y., Ding, L.L., Wang, Z.Y., Zhong, P.Y. | 1.572 | X-RAY DIFFRACTION | 0.223 | 0.195 | false | true | unknown | unknown | unknown | null | null | null | null | null |
7dur | N | null | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | BIOSYNTHETIC PROTEIN | 01/11/21 | Cryo-EM structure of the compound 2-bound human GLP-1 receptor-Gs complex | HOMO SAPIENS; RATTUS NORVEGICUS; BOS TAURUS; SYNTHETIC CONSTRUCT | synthetic construct | null | homo sapiens | rattus norvegicus | Cong, Z., Chen, L., Ma, H., Zhou, Q., Zou, X., Ye, C., Dai, A., Liu, Q., Huang, W., Sun, X., Wang, X., Xu, P., Zhao, L., Xia, T., Zhong, W., Yang, D., Xu, H.E., Zhang, Y., Wang, M. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6ukt | F | null | 0 | B | protein | null | guanine nucleotide-binding protein g(i) subunit alpha-1 | SIGNALING PROTEIN | 10/05/19 | Cryo-EM structure of mammalian Ric-8A:Galpha(i):nanobody complex | RATTUS NORVEGICUS; LAMA GLAMA | lama glama | null | rattus norvegicus | Mou, T.C., Zhang, K., Johnston, J.D., Chiu, W., Sprang, S.R. | 3.87 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7d77 | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(o) subunit alpha | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 10/03/20 | Cryo-EM structure of the cortisol-bound adhesion receptor GPR97-Go complex | HOMO SAPIENS; SYNTHETIC CONSTRUCT | synthetic construct | null | homo sapiens | homo sapiens | Ping, Y., Mao, C., Xiao, P., Zhao, R., Jiang, Y., Yang, Z., An, W., Shen, D., Yang, F., Zhang, H., Qu, C., Shen, Q., Tian, C., Li, Z., Li, S., Wang, G., Tao, X., Wen, X., Zhong, Y., Yang, J., Yi, F., Yu, X., Xu, E., Zhang, Y., Sun, J. | 2.9 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
2bx5 | null | I | 0 | null | null | null | null | ANTIBODY | 07/22/05 | Is FR1 the antibody's Achillies heel | ESCHERICHIA COLI | null | null | null | James, L.C. | 2.7 | X-RAY DIFFRACTION | 0.290 | 0.250 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
7kml | I | M | 0 | B | protein | null | spike glycoprotein | Viral protein/Immune System | 11/03/20 | cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, three RBDs bound | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Li, Z., Rini, J.M. | 3.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5dum | H | L | 0 | A | protein | null | hemagglutinin | IMMUNE SYSTEM | 09/19/15 | Crystal structure of influenza A virus H5 hemagglutinin globular head in complex with the Fab of antibody 65C6 | HOMO SAPIENS; INFLUENZA A VIRUS (A/ANHUI/1/2005(H5N1)) | homo sapiens | homo sapiens | influenza a virus (a/anhui/1/2005(h5n1)) | Sun, J., Zuo, T., Wang, G., Zhou, P., Zhang, L., Wang, X. | 3.003 | X-RAY DIFFRACTION | 0.269 | 0.215 | false | true | IGHV5 | IGKV3 | Kappa | null | null | null | null | null |
7bsd | H | L | 0 | I | protein | null | ns1c | IMMUNE SYSTEM/VIRAL PROTEIN | 03/30/20 | Complex structure of 1G5.3 Fab bound to ZIKV NS1c | HOMO SAPIENS; ZIKA VIRUS | homo sapiens | homo sapiens | zika virus | Song, H., Qi, J., Gao, F.G. | 2.53 | X-RAY DIFFRACTION | 0.239 | 0.221 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7ps2 | A | B | 0 | G | protein | null | surface glycoprotein | VIRAL PROTEIN | 09/22/21 | Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-29 and Beta-53 Fabs | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Ren, J., Stuart, D.I. | 2.99 | X-RAY DIFFRACTION | 0.266 | 0.233 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
1mcb | null | B | 0 | P | peptide | null | peptide n-acetyl-l-gln-d-phe-l-his-d-pro-oh | IMMUNOGLOBULIN | 02/25/93 | PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS | HOMO SAPIENS; SYNTHETIC CONSTRUCT | null | phoca vitulina | null | Edmundson, A.B., Harris, D.L., Fan, Z.-C., Guddat, L.W. | 2.7 | X-RAY DIFFRACTION | unknown | unknown | false | true | null | IGLV2 | Lambda | null | null | null | null | null |
4ubd | C | D | 0 | B | I | protein | protein | NA | NA | hemagglutinin ha2 chain | hemagglutinin ha1 chain | viral protein/immune system | 08/12/14 | Crystal structure of a neutralizing human monoclonal antibody with 1968 H3 HA | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Shore, D.A., Yang, H., Cho, M., Donis, R.O., Stevens, J. | 3.5 | X-RAY DIFFRACTION | 0.258 | 0.212 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6orn | A | B | 0 | G | protein | null | rc1 variant of hiv-1 env glycoprotein gp120 | VIRAL PROTEIN/Immune System | 04/30/19 | Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch bNAb 10-1074 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Abernathy, M.E., Gristick, H.B., Bjorkman, P.J. | 4.05 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | unknown | unknown | null | null | null | null | null |
6mco | D | E | 0 | B | protein | null | transmembrane protein gp41 | VIRAL PROTEIN | 08/31/18 | Crystal structure of the B41 SOSIP.664 Env trimer with PGT124 and 35O22 Fabs, in P23 space group | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Kumar, S., Sarkar, A., Wilson, I.A. | 3.526 | X-RAY DIFFRACTION | 0.322 | 0.306 | false | true | unknown | unknown | unknown | null | null | null | null | null |
6sc8 | B | null | 0 | A | protein | null | e3 ubiquitin-protein ligase rnf31 | LIGASE | 07/23/19 | dAb3/HOIP-RBR-Ligand4 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | synthetic construct | null | homo sapiens | Tsai, Y.-C.I., Johansson, H., House, D., Rittinger, K. | 2.106 | X-RAY DIFFRACTION | 0.261 | 0.219 | false | true | IGHV3 | null | null | null | null | null | null | null |
7zf8 | H | L | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN | 04/01/22 | SARS-CoV-2 Omicron BA.2 RBD in complex with COVOX-150 Fab | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Huo, J., Ren, J., Stuart, D.I. | 2.95 | X-RAY DIFFRACTION | 0.258 | 0.220 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4xcy | J | K | 0 | null | null | null | null | IMMUNE SYSTEM | 12/18/14 | Crystal structure of human 4E10 Fab in complex with phosphatidylglycerol (06:0 PG) | HOMO SAPIENS | homo sapiens | homo sapiens | null | Irimia, A., Stanfield, R.L., Wilson, I.A. | 3.96 | X-RAY DIFFRACTION | 0.291 | 0.244 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7e86 | A | B | 0 | C | protein | null | spike protein s1 | VIRAL PROTEIN,IMMUNE SYSTEM | 03/01/21 | Crystal structure of the SARS-CoV-2 S RBD in complex with BD-508 Fab | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Gao, C., Xiao, J. | 2.9 | X-RAY DIFFRACTION | 0.255 | 0.196 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2qtj | D | O | 0 | null | null | null | null | IMMUNE SYSTEM | 08/02/07 | Solution structure of human dimeric immunoglobulin A | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Furtado, P.B., Almogren, A., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5w1k | D | C | 0 | E | protein | null | pre-glycoprotein polyprotein gp complex | VIRAL PROTEIN/IMMUNE SYSTEM | 06/03/17 | JUNV GP1 CR1-10 Fab CR1-28 Fab complex | HOMO SAPIENS; JUNIN MAMMARENAVIRUS | homo sapiens | homo sapiens | junin mammarenavirus | Raymond, D.D., Clark, L.E., Abraham, J. | 3.99 | X-RAY DIFFRACTION | 0.288 | 0.237 | false | true | IGHV4 | IGKV3 | Kappa | null | null | null | null | null |
1rih | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 11/17/03 | Crystal Structure of Fab 14F7, a unique anti-tumor antibody specific for N-glycolyl GM3 | MUS MUSCULUS | mus musculus | mus musculus | null | Krengel, U., Olsson, L.-L., Martinez, C., Talavera, A., Rojas, G., Mier, E., Angstrom, J., Moreno, E. | 2.5 | X-RAY DIFFRACTION | 0.238 | 0.181 | false | false | IGHV1 | IGKV5 | Kappa | null | null | null | null | null |
3ztj | G | H | 0 | B | A | protein | protein | NA | NA | hemagglutinin ha2 chain | hemagglutinin ha1 chain | IMMUNE SYSTEM/VIRAL PROTEIN | 07/08/11 | Structure of influenza A neutralizing antibody selected from cultures of single human plasma cells in complex with human H3 Influenza haemagglutinin. | HOMO SAPIENS; INFLUENZA A VIRUS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Voss, J.E., Vachieri, S.G., Gamblin, S.J., Collins, P.J., Haire, L.F., Skehel, J.J. | 3.41 | X-RAY DIFFRACTION | 0.28434 | 0.23410 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
1mcq | null | A | 0 | P | peptide | null | peptide n-acetyl-l-his-d-pro-nh2 | IMMUNOGLOBULIN | 02/25/93 | PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS | HOMO SAPIENS | null | homo sapiens | null | Edmundson, A.B., Harris, D.L., Fan, Z.-C., Guddat, L.W. | 2.7 | X-RAY DIFFRACTION | unknown | unknown | false | true | null | IGLV2 | Lambda | null | null | null | null | null |
3stb | B | null | 0 | C | protein | null | rna-editing complex protein mp42 | RNA BINDING PROTEIN/IMMUNE SYSTEM | 07/09/11 | A complex of two editosome proteins and two nanobodies | LAMA GLAMA; TRYPANOSOMA BRUCEI | lama | null | trypanosoma brucei | Park, Y.-J., Hol, W. | 2.5 | X-RAY DIFFRACTION | 0.234 | 0.199 | false | true | IGHV1 | null | null | null | null | null | null | null |
6oao | D | d | 0 | C | protein | null | duffy binding surface protein region ii | CELL INVASION | 03/18/19 | Structure of DBP in complex with human neutralizing antibody 092096 | PLASMODIUM VIVAX; HOMO SAPIENS | homo sapiens | null | plasmodium vivax | Urusova, D., Tolia, N.H. | 3.497 | X-RAY DIFFRACTION | 0.279 | 0.238 | true | true | unknown | unknown | unknown | null | null | null | null | null |
5mwn | D | null | 0 | B | protein | null | type vi secretion protein | TRANSPORT PROTEIN | 01/18/17 | Structure of the EAEC T6SS component TssK N-terminal domain in complex with llama nanobodies nbK18 and nbK27 | LAMA GLAMA; ESCHERICHIA COLI | lama glama | null | escherichia coli | Cambillau, C., Nguyen, V.S., Spinelli, S., Legrand, P. | 2.2 | X-RAY DIFFRACTION | 0.220 | 0.199 | false | true | IGHV1 | null | null | null | null | null | null | null |
1fve | B | A | 0 | null | null | null | null | IMMUNOGLOBULIN | 10/20/92 | X-RAY STRUCTURES OF THE ANTIGEN-BINDING DOMAINS FROM THREE VARIANTS OF HUMANIZED ANTI-P185-HER2 ANTIBODY 4D5 AND COMPARISON WITH MOLECULAR MODELING | HOMO SAPIENS | homo sapiens | homo sapiens | null | Eigenbrot, C., Randal, M., Presta, L., Kossiakoff, A.A. | 2.7 | X-RAY DIFFRACTION | unknown | 0.171 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4zg1 | D | null | 0 | null | null | null | null | PROTEIN BINDING | 04/22/15 | Crystal structure of a nanobody raised against KDM5b | LAMA GLAMA | lama glama | null | null | Wiuf, A., Kristensen, O., Gajhede, M. | 1.85 | X-RAY DIFFRACTION | 0.235 | 0.186 | false | true | IGHV1 | null | null | null | null | null | null | null |
7rd3 | H | L | 0 | D | peptide | null | circumsporozoite protein | IMMUNE SYSTEM | 07/09/21 | Crystal structure of PfCSP peptide 21 with vaccine-elicited human anti-malaria antibody m42.126 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | plasmodium falciparum | Xu, K., Kwong, P.D. | 1.81 | X-RAY DIFFRACTION | 0.260 | 0.216 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
5xp1 | null | H | 0 | null | null | null | null | IMMUNE SYSTEM | 05/31/17 | Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 6 | HOMO SAPIENS | null | homo sapiens | null | Mine, S., Nakamura, T., Uegaki, K., Hamada, D. | 2.88 | X-RAY DIFFRACTION | 0.297 | 0.257 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
6z43 | Z | null | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 06/03/20 | Cryo-EM Structure of SARS-CoV-2 Spike : H11-D4 Nanobody Complex | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; LAMA GLAMA | lama glama | null | severe acute respiratory syndrome coronavirus2 | Ruza, R.R., Duyvesteyn, H.M.E., Shah, P., Carrique, L., Ren, J., Malinauskas, T., Zhou, D., Stuart, D.I., Naismith, J.H. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6iyn | A | null | 4 | null | null | null | null | AFLATOXIN B1-BINDING PROTEIN | 12/17/18 | Solution structure of camelid nanobody Nb26 against aflatoxin B1 | VICUGNA PACOS | vicugna pacos | null | null | Nie, Y., He, T., Zhu, J., Li, S.L., Hu, R., Yang, Y.H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
1mhh | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 08/20/02 | Antibody-antigen complex | FINEGOLDIA MAGNA; MUS MUSCULUS | mus musculus | mus musculus | null | Graille, M., Stura, E.A. | 2.1 | X-RAY DIFFRACTION | 0.247 | 0.197 | false | false | IGHV9 | IGKV8 | Kappa | 0 | -12.278197 | Unknown | null | TBD |
5w3e | E | G | 0 | B | A | C | protein | protein | protein | NA | NA | NA | viral protein 3 | viral protein 1 | viral protein 2 | VIRUS/IMMUNE SYSTEM | 06/07/17 | CryoEM structure of rhinovirus B14 in complex with C5 Fab (33 degrees Celsius, molar ratio 1:3, full particle) | MUS MUSCULUS; HUMAN RHINOVIRUS 14 | mus musculus | mus musculus | human rhinovirus 14 | human rhinovirus 14 | human rhinovirus 14 | Liu, Y., Dong, Y., Rossmann, M.G. | 2.53 | ELECTRON MICROSCOPY | null | null | false | false | IGHV2 | IGKV12 | Kappa | null | null | null | null | null |
6raf | C | null | 0 | B | protein | null | multidrug resistance abc transporter atp-binding andpermease protein | TRANSPORT PROTEIN | 04/06/19 | Heterodimeric ABC exporter TmrAB in inward-facing narrow conformation under turnover conditions | THERMUS THERMOPHILUS HB27; THERMUS THERMOPHILUS; VICUGNA PACOS | vicugna pacos | null | thermus thermophilus | Thomas, C., Januliene, D., Mehdipour, A.R., Hofmann, S., Hummer, G., Moeller, A., Tampe, R. | 3.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
5vl3 | E | F | 0 | T | protein | null | b-cell receptor cd22 | IMMUNE SYSTEM | 04/24/17 | CD22 d1-d3 in complex with therapeutic Fab Epratuzumab | HOMO SAPIENS; MUS MUSCULUS | mus musculus, homo sapiens | mus musculus, homo sapiens | homo sapiens | Sicard, T., Ereno-Orbea, J., Julien, J.P. | 3.1 | X-RAY DIFFRACTION | 0.295 | 0.280 | false | true | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
5uqy | D | C | 0 | A | protein | null | envelope glycoprotein gp1 | VIRAL PROTEIN/IMMUNE SYSTEM | 02/08/17 | Crystal structure of Marburg virus GP in complex with the human survivor antibody MR78 | LAKE VICTORIA MARBURGVIRUS (STRAIN RAVN-87); HOMO SAPIENS | homo sapiens | homo sapiens | lake victoria marburgvirus (strain ravn-87) | Hashiguchi, T., Fusco, M.L., Hastie, K.M., Bomholdt, Z.A., Lee, J.E., Flyak, A.I., Matsuoka, R., Kohda, D., Yanagi, Y., Hammel, M., Crowe, J.E., Saphire, E.O. | 3.6 | X-RAY DIFFRACTION | 0.262 | 0.221 | false | false | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
7lf8 | H | L | 0 | A | protein | null | apolipoprotein l2 | IMMUNE SYSTEM | 01/15/21 | Fab 6D12 bound to ApoL2 NTD | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Ultsch, M., Kirchhofer, D. | 2.15 | X-RAY DIFFRACTION | 0.230 | 0.192 | false | true | IGHV5 | IGKV16 | Kappa | null | null | null | null | null |
6rlm | I | J | 0 | null | null | null | null | IMMUNE SYSTEM | 05/02/19 | Crystal structure of AT1412dm Fab fragment | HOMO SAPIENS | homo sapiens | homo sapiens | null | Neviani, V., Pearce, N.M., Pos, W., Schotte, R., Spits, H., Gros, P. | 2.5 | X-RAY DIFFRACTION | 0.267 | 0.242 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
6b3d | H | L | 0 | H | carbohydrate | MAN | polysaccharide | IMMUNE SYSTEM | 09/21/17 | Crystal structure of anti-HIV antibody PGT128 in complex with a bacterially derived synthetic mimetic of Man9. | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Murrell, S., Wilson, I.A. | 2.271 | X-RAY DIFFRACTION | 0.198 | 0.163 | false | true | unknown | IGLV2 | Lambda | null | null | null | null | null |
4rbp | H | L | 0 | H | carbohydrate | KDO | polysaccharide | IMMUNE SYSTEM | 09/12/14 | Crystal structure of HIV neutralizing antibody 2G12 in complex with a bacterial oligosaccharide analog of mammalian oligomanose | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Stanfield, R.L., Wilson, I.A., De Castro, C., Marzaioli, A.M., Pantophlet, R. | 1.85 | X-RAY DIFFRACTION | 0.252 | 0.208 | false | false | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7qn8 | K | null | 0 | B | protein | null | gamma-aminobutyric acid receptor subunit beta-3 | MEMBRANE PROTEIN | 12/20/21 | Cryo-EM structure of human full-length beta3delta GABA(A)R in complex with histamine and nanobody Nb25 | HOMO SAPIENS | homo sapiens | null | homo sapiens | Sente, A., Desai, R., Naydenova, K., Malinauskas, T., Jounaidi, Y., Miehling, J., Zhou, X., Masiulis, S., Hardwick, S.W., Chirgadze, D.Y., Miller, K.W., Aricescu, A.R. | 3.1 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6wpt | H | L | 0 | C | protein | null | sars-cov-2 spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 05/27/20 | Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment (open state) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Pinto, D., Park, Y.J., Beltramello, M., Walls, A.C., Tortorici, M.A., Bianchi, S., Jaconi, S., Culap, K., Zatta, F., De Marco, A., Peter, A., Guarino, B., Spreafico, R., Cameroni, E., Case, J.B., Chen, R.E., Havenar-Daughton, C., Snell, G., Virgin, H.W., Lanzavecchia, A., Diamond, M.S., Fink, K., Veesler, D., Corti, D.... | 3.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6lxk | H | L | 0 | A | protein | null | neuraminidase | HYDROLASE/IMMUNE SYSTEM | 02/11/20 | Crystal structure of Z2B3 D102R Fab in complex with influenza virus neuraminidase from A/Serbia/NS-601/2014 (H1N1) | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | Jiang, H., Peng, W., Qi, J., Chai, Y., Song, H., Shi, Y., Gao, G.F., Wu, Y. | 3.608 | X-RAY DIFFRACTION | 0.249 | 0.215 | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
6iek | B | C | 0 | A | protein | null | nsmgngc | STRUCTURAL PROTEIN/IMMUNE SYSTEM | 04/10/19 | Structure of RVFV Gn and human monoclonal antibody R12 | RIFT VALLEY FEVER VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | rift valley fever virus | Wang, Q.H., Wu, Y., Gao, F., Qi, J.X., Gao, G.F. | 2.7 | X-RAY DIFFRACTION | 0.258 | 0.225 | false | true | IGHV1 | IGLV5 | Lambda | null | null | null | null | null |
2aj3 | F | E | 0 | null | null | null | null | IMMUNE SYSTEM | 08/01/05 | Crystal Structure of a Cross-Reactive HIV-1 Neutralizing CD4-Binding Site Antibody Fab m18 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Prabakaran, P., Gan, J., Wu, Y.Q., Zhang, M.Y., Dimitrov, D.S., Ji, X. | 2.03 | X-RAY DIFFRACTION | 0.269 | 0.225 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
7cea | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 06/22/20 | Crystal structure of HUTS-4 Fv-clasp fragment | MUS MUSCULUS; HOMO SAPIENS | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Arimori, T., Takagi, J. | 2.55 | X-RAY DIFFRACTION | 0.266 | 0.252 | false | true | IGHV8 | IGKV4 | Kappa | null | null | null | null | null |
2kh2 | B | b | 7 | A | protein | null | interleukin-1 beta | Cytokine/IMMUNE SYSTEM | 03/23/09 | Solution structure of a scFv-IL-1B complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Wilkinson, I.C., Hall, C.J., Veverka, V., Muskett, F.W., Stephens, P.E., Taylor, R.J., Henry, A.J., Carr, M.D. | NOT | SOLUTION NMR | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
5uk4 | a | null | 0 | A | protein | null | anti-vesicular stomatitis virus n vhh | Viral Protein/RNA/Immune System | 01/19/17 | VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307 | VESICULAR STOMATITIS INDIANA VIRUS (STRAIN SAN JUAN); VICUGNA PACOS | vicugna pacos | null | vesicular stomatitis indiana virus (strain sanjuan) | Hanke, L., Knockenhauer, K.E., Ploegh, H.L., Schwartz, T.U. | 3.204 | X-RAY DIFFRACTION | 0.288 | 0.237 | false | false | IGHV1 | null | null | null | null | null | null | null |
4k3h | null | E | 0 | E | Hapten | 1OM | 4-{bis[4-(dimethylamino)phenyl]methyl}phenol | immune system/inhibitor | 04/10/13 | Immunoglobulin lambda variable domain L5(L89S) fluorogen activationg protein in complex with malachite green | HOMO SAPIENS | null | homo sapiens | homo sapiens | Stanfield, R.L., Szent-Gyorgyi, C., Wilson, I.A. | 2.45 | X-RAY DIFFRACTION | 0.225 | 0.194 | false | true | null | IGLV7 | Lambda | 0 | -9.350354 | Unknown | null | TBD |
1g9e | A | null | 10 | null | null | null | null | IMMUNE SYSTEM | 11/23/00 | SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA | LAMA GLAMA | lama glama | null | null | Renisio, J.-G., Perez, J., Czisch, M., Guenneugues, M., Bornet, O., Frenken, L., Cambillau, C., Darbon, H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6mui | C | D | 0 | B | protein | null | e2 | VIRUS/IMMUNE SYSTEM | 10/23/18 | CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-42 antibody | EASTERN EQUINE ENCEPHALITIS VIRUS; MUS MUSCULUS | mus musculus | mus musculus | eastern equine encephalitis virus | Hasan, S.S., Sun, C., Kim, A.S., Watanabe, Y., Chen, C.L., Klose, T., Buda, G., Crispin, M., Diamond, M.S., Klimstra, W.B., Rossmann, M.G. | 7.7 | ELECTRON MICROSCOPY | null | null | false | false | IGHV9 | IGLV1 | Lambda | null | null | null | null | null |
6ikm | R | r | 0 | null | null | null | null | ANTIMICROBIAL PROTEIN | 10/16/18 | Crystal structure of SpuE-Spermidine in complex with ScFv5 | PSEUDOMONAS AERUGINOSA; HOMO SAPIENS | pseudomonas aeruginosa | homo sapiens | null | Wu, D., Sun, X. | 3.398 | X-RAY DIFFRACTION | 0.268 | 0.228 | true | true | unknown | unknown | unknown | null | null | null | null | null |
7l7e | T | U | 0 | b | protein | null | unknown | VIRAL PROTEIN/IMMUNE SYSTEM | 12/28/20 | Crystal structure of SARS-CoV-2 spike RBD in complex with human monoclonal antibodies AZD8895 and AZD1061 | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Dong, J., Crowe, J.E. | 3.0 | X-RAY DIFFRACTION | 0.273 | 0.215 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6mtj | H | L | 0 | G | protein | null | envelope glycoprotein gp160 | IMMUNE SYSTEM/INHIBITOR | 10/19/18 | Crystal Structure of HIV-1 BG505 SOSIP.664 Prefusion Env Trimer Bound to Small Molecule HIV-1 Entry Inhibitor BMS-378806 in Complex with Human Antibodies 3H109L and 35O22 at 2.9 Angstrom | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Lai, Y.-T., Kwong, P.D. | 2.336 | X-RAY DIFFRACTION | 0.282 | 0.233 | false | true | IGHV4 | unknown | unknown | null | null | null | null | null |
7a4d | D | null | 0 | F | peptide | null | aph coiled-coil | DE NOVO PROTEIN | 08/19/20 | Crystal structure of the APH coiled-coil in complex with nanobodies Nb28 and Nb30 | LAMA GLAMA; SYNTHETIC CONSTRUCT | lama glama | null | synthetic construct | Hadzi, S. | 2.694 | X-RAY DIFFRACTION | 0.223 | 0.177 | false | true | IGHV1 | null | null | null | null | null | null | null |
6ymq | F | f | 0 | K | protein | null | triggering receptor expressed on myeloid cells 2 | IMMUNE SYSTEM | 04/09/20 | TREM2 extracellular domain (19-131) in complex with single-chain variable 4 (scFv-4) | HOMO SAPIENS | homo sapiens | null | homo sapiens | Szykowska, A., Preger, C., Scacioc, A., Mukhopadhyay, S.M.M., McKinley, G., Graslund, S., Wigren, E., Persson, H., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Di Daniel, E., Davis, J.B., Burgess-Brown, N., Bullock, A. | 3.07 | X-RAY DIFFRACTION | 0.288 | 0.274 | true | true | unknown | unknown | unknown | null | null | null | null | null |
3e8u | H | L | 0 | P | peptide | null | bnp peptide epitope | IMMUNE SYSTEM | 08/20/08 | Crystal structure and thermodynamic analysis of diagnostic Fab 106.3 complexed with BNP 5-13 (C10A) reveal basis of selective molecular recognition | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Longenecker, K.L., Ruan, Q., Fry, E.H., Saldana, S.S., Brophy, S.E., Richardson, P.L., Tetin, S.Y. | 2.1 | X-RAY DIFFRACTION | 0.243 | 0.185 | false | true | IGHV9 | IGKV3 | Kappa | 0 | -13.14 | Other | 23 | 19274732 |
6pwu | H | L | 0 | A | C | E | protein | protein | protein | NA | NA | NA | envelope glycoprotein gp160 | envelope glycoprotein gp160 | envelope glycoprotein gp160 | VIRAL PROTEIN | 07/23/19 | Structure of full-length, fully glycosylated, non-modified HIV-1 gp160 bound to PG16 Fab | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Pan, J., Chen, B., Harrison, S.C. | 6.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
7c6a | H | L | 0 | A | protein | null | type-2 angiotensin ii receptor,soluble cytochrome b562,type-2 angiotensin ii receptor | SIGNALING PROTEIN | 05/21/20 | Crystal structure of AT2R-BRIL and SRP2070_Fab complex | MUS MUSCULUS; HOMO SAPIENS; ESCHERICHIA COLI; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens, escherichia coli | Suzuki, M., Miyagi, H., Asada, H., Yasunaga, M., Suno, C., Takahashi, Y., Saito, J., Iwata, S. | 3.4 | X-RAY DIFFRACTION | 0.285 | 0.235 | false | true | IGHV1 | IGKV5 | Kappa | null | null | null | null | null |
7kej | H | K | 0 | B | protein | null | virion spike glycoprotein | VIRAL PROTEIN/Immune System | 10/11/20 | BDBV-289 bound to EBOV GPdMuc Makona | EBOLA VIRUS; HOMO SAPIENS; ZAIRE EBOLAVIRUS | homo sapiens | homo sapiens | ebola virus | Murin, C.D., Ward, A.B. | 3.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV3 | Lambda | null | null | null | null | null |
6nfc | C | D | 0 | I | E | protein | protein | NA | NA | hiv-1 env bg505 md64 n332-gt5 sosip gp41 | hiv-1 env bg505 md64 n332-gt5 sosip gp120 | VIRAL PROTEIN | 12/19/18 | BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP42 fragmentantigen binding and base-binding RM20A3 fragment antigen binding | MACACA MULATTA; HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | macaca mulatta | macaca mulatta | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Ozorowski, G., Torres, J.L., Ward, A.B. | 3.43 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
7k3b | L | K | 0 | E | F | protein | protein | NA | NA | hemagglutinin | hemagglutinin | VIRAL PROTEIN | 09/10/20 | Structure of full-length influenza HA with a head-binding antibody at pH 5.2, conformation C, central helices splay | INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/1968 H3N2); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (strain a/hong kong/1/1968h3n2) | influenza a virus (strain a/hong kong/1/1968h3n2) | Gui, M., Gao, J., Xiang, Y. | 3.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
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