pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7wrz | H | L | 0 | R | protein | null | spike protein s1 | VIRAL PROTEIN | 01/28/22 | Local resolution of BD55-5840 Fab and SARS-COV2 Omicron RBD | SARS coronavirus B012 | sars coronavirus b012 | sars coronavirus b012 | sars coronavirus b012 | Zhang, Z.Z., Xiao, J.J. | 0 | ELECTRON MICROSCOPY | null | null | false | true | IGHV7 | IGKV3 | Kappa | null | null | null | null | null |
5kg9 | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 06/13/16 | Crystal structure of the gp120 v2 antibody RE505-22 Fab from IGH- and IGK-humanized mouse | MUS MUSCULUS, HOMO SAPIENS | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Nicely, N.I. | 2.3 | X-RAY DIFFRACTION | 0.281 | 0.240 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
5ijk | B | D | 0 | Y | peptide | null | peptide pro-leu-gln-pro-glu-gln-pro-phe-pro | IMMUNE SYSTEM | 03/02/16 | Crystal structure of anti-gliadin 1002-1E03 Fab fragment in complex of peptide PLQPEQPFP | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | triticum aestivum | Chen, X., Zhao, Y., Harlos, K., Snir, O., Sollid, L.M. | 2.5 | X-RAY DIFFRACTION | 0.265 | 0.209 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
7q0i | H | L | 0 | C | protein | null | spike protein s1 | VIRAL PROTEIN | 10/14/21 | Crystal structure of the N-terminal domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-43 | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Ren, J., Stuart, D.I. | 2.39 | X-RAY DIFFRACTION | 0.242 | 0.202 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
4qti | H | L | 0 | U | protein | null | urokinase plasminogen activator surface receptor | IMMUNE SYSTEM | 07/08/14 | Crystal structure of human uPAR in complex with anti-uPAR Fab 8B12 | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Zhao, B., Yuan, C., Luo, Z., Huang, M. | 3.0 | X-RAY DIFFRACTION | 0.296 | 0.250 | false | false | IGHV1 | IGKV9 | Kappa | 0 | -10.592634 | SPR | null | TBD |
4g80 | A | B | 0 | S | protein | null | voltage-sensor containing phosphatase | membrane protein | 07/20/12 | Crystal structure of voltage sensing domain of Ci-VSP with fragment antibody (WT, 3.8 A) | HOMO SAPIENS; CIONA INTESTINALIS | homo sapiens | homo sapiens | ciona intestinalis | Li, Q. | 3.58 | X-RAY DIFFRACTION | 0.292 | 0.248 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5w6c | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/16/17 | UCA Fab (unbound) from 6649 Lineage | HOMO SAPIENS | homo sapiens | homo sapiens | null | Raymond, D.D., Harrison, S.C. | 1.634 | X-RAY DIFFRACTION | 0.201 | 0.177 | false | true | IGHV4 | IGLV1 | Lambda | null | null | null | null | null |
6fyt | I | null | 0 | B | A | protein | protein | NA | NA | hemagglutinin | hemagglutinin | VIRAL PROTEIN | 03/12/18 | Structure of H1 (A/solomon Islands/3/06) Influenza Hemagglutinin in complex with SD38 | INFLUENZA A VIRUS (A/SOLOMON ISLANDS/3/2006(H1N1)); LAMA GLAMA | lama glama | null | influenza a virus (a/solomonislands/3/2006(h1n1)) | influenza a virus (a/solomonislands/3/2006(h1n1)) | Laursen, N.S., Wilson, I.A. | 2.8 | X-RAY DIFFRACTION | 0.235 | 0.200 | false | true | IGHV1 | null | null | null | null | null | null | null |
7kn5 | F | null | 0 | B | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 11/04/20 | Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobodies VHH E and U | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; VICUGNA PACOS | vicugna pacos | null | severe acute respiratory syndrome coronavirus2 | Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A. | 1.87 | X-RAY DIFFRACTION | 0.213 | 0.177 | false | true | IGHV1 | null | null | null | null | null | null | null |
6mpg | Q | R | 0 | C | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 10/06/18 | Cryo-EM structure at 3.2 A resolution of HIV-1 fusion peptide-directed antibody, A12V163-b.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122 | MACACA MULATTA; HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Kwong, P.D. | 3.2 | ELECTRON MICROSCOPY | null | null | false | true | unknown | IGKV3 | Kappa | null | null | null | null | null |
5tpl | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 10/20/16 | Crystal Structure of DH270.3 (unliganded) from the DH270 Broadly Neutralizing N332-glycan Dependent Lineage | HOMO SAPIENS | homo sapiens | homo sapiens | null | Fera, D., Harrison, S.C. | 2.5 | X-RAY DIFFRACTION | 0.249 | 0.215 | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
7n3h | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/01/21 | Crystal structure of an anti-SARS-CoV-2 human neutralizing antibody Fab fragment C099 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Flyak, A.I., Bjorkman, P.J., Barnes, C.O. | 1.26 | X-RAY DIFFRACTION | 0.202 | 0.180 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
1g9e | A | null | 9 | null | null | null | null | IMMUNE SYSTEM | 11/23/00 | SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA | LAMA GLAMA | lama glama | null | null | Renisio, J.-G., Perez, J., Czisch, M., Guenneugues, M., Bornet, O., Frenken, L., Cambillau, C., Darbon, H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
4fnl | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/19/12 | Crystal structure of broadly neutralizing antibody C05 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Ekiert, D.C., Wilson, I.A. | 2.297 | X-RAY DIFFRACTION | 0.240 | 0.212 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
3qxt | A | null | 0 | A | Hapten | MTX | METHOTREXATE | IMMUNE SYSTEM | 03/02/11 | Structure of an Anti-Methotrexate CDR1-3 Graft VHH Antibody in Complex with Methotrexate | LAMA GLAMA | lama glama | null | lama glama | Fanning, S.W., Horn, J.R. | 1.7 | X-RAY DIFFRACTION | 0.195 | 0.175 | false | true | IGHV1 | null | null | 0.000006 | -7.123876 | Unknown | null | TBD |
5ku0 | 7 | null | 0 | 3 | protein | null | vp3 | Virus/Immune System | 07/12/16 | expanded poliovirus in complex with VHH 17B | CAMELUS DROMEDARIUS; POLIOVIRUS TYPE 1 (STRAIN MAHONEY) | camelus dromedarius | null | poliovirus type 1 (strain mahoney) | Strauss, M., Schotte, L., Filman, D.J., Hogle, J.M. | 4.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6wm9 | B | C | 0 | A | protein | null | reticulocyte binding protein 2b | CELL INVASION | 04/20/20 | Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to human monoclonal antibody 237235 | PLASMODIUM VIVAX (STRAIN SALVADOR I); HOMO SAPIENS | homo sapiens | homo sapiens | plasmodium vivax (strain salvador i) | Chan, L.J., Dietrich, M.H., Tham, W.H. | 2.45 | X-RAY DIFFRACTION | 0.279 | 0.223 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
5jor | B | C | 0 | null | null | null | null | IMMUNE SYSTEM | 05/02/16 | Crystal structure of unbound anti-glycan antibody Fab14.22 at 2.2 A | MUS MUSCULUS | mus musculus | mus musculus | null | Sarkar, A., Irimia, A., Teyton, L., Wilson, I.A. | 2.206 | X-RAY DIFFRACTION | 0.237 | 0.205 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6xw5 | D | null | 0 | B | protein | null | capsid protein | VIRAL PROTEIN | 01/23/20 | Crystal structure of murine norovirus P domain in complex with Nanobody NB-5820 | MURINE NOROVIRUS 1; VICUGNA PACOS | vicugna pacos | null | murine norovirus 1 | Kilic, T., Sabin, C., Hansman, G. | 1.72 | X-RAY DIFFRACTION | 0.191 | 0.161 | false | true | IGHV1 | null | null | null | null | null | null | null |
2q20 | null | A | 0 | null | null | null | null | PROTEIN FIBRIL | 05/25/07 | Structure of the germline Vk1 O18/O8 light chain variable domain homodimer | HOMO SAPIENS | null | homo sapiens | null | Thompson, J.R., Ramirez-Alvarado, M., Baden, E.M. | 1.3 | X-RAY DIFFRACTION | 0.148 | 0.119 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
3dwt | F | null | 0 | null | null | null | null | IMMUNE SYSTEM | 07/23/08 | Structure of CabBCII-10 nanobody | CAMELUS DROMEDARIUS | camelus dromedarius | null | null | Vincke, C., Loris, R., Muyldermans, S., Conrath, K. | 2.9 | X-RAY DIFFRACTION | 0.305 | 0.245 | false | true | IGHV1 | null | null | null | null | null | null | null |
7mkl | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 04/24/21 | SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; MUS MUSCULUS | mus musculus | mus musculus | severe acute respiratory syndrome coronavirus2 | Adams, L.J., Fremont, D.H. | 3.2 | ELECTRON MICROSCOPY | null | null | false | false | IGHV2 | IGKV4 | Kappa | null | null | null | null | null |
3iyw | H | L | 0 | A | protein | null | polyprotein | VIRUS | 06/18/10 | West Nile virus in complex with Fab fragments of MAb CR4354 (fitted coordinates of envelope proteins and Fab fragments of one icosahedral ASU) | WEST NILE VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | west nile virus | Rossmann, M.G., Kaufmann, B. | 13.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
5c8j | C | D | 0 | L | protein | null | protein mj0480 | MEMBRANE PROTEIN | 06/25/15 | A YidC-like protein in the archaeal plasma membrane | HOMO SAPIENS; METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) | homo sapiens | homo sapiens | methanocaldococcus jannaschii (strain atcc43067 / dsm 2661 / jal-1 / jcm 10045 / nbrc 100440) | Borowska, M.T., Dominik, P.K., Anghel, S.A., Kossiakoff, A.A., Keenan, R.J. | 3.502 | X-RAY DIFFRACTION | 0.302 | 0.253 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6iap | H | L | 0 | A | protein | null | natural cytotoxicity triggering receptor 1 | IMMUNE SYSTEM | 11/27/18 | structure of human NKp46 in complex with antibody NKp46-1 and NKp46-4 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | synthetic construct | synthetic construct | homo sapiens | Roussel, A., Amigues, B. | 2.9 | X-RAY DIFFRACTION | 0.263 | 0.187 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7zf5 | H | L | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN | 04/01/22 | SARS-CoV-2 Omicron RBD in complex with Omi-12 and Beta-54 Fabs | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Huo, J., Ren, J., Stuart, D.I. | 5.32 | X-RAY DIFFRACTION | 0.256 | 0.249 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
6x5n | h | l | 0 | r | nucleic-acid | null | unknown | Immune System/RNA | 05/26/20 | Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | synthetic construct | Swain, M., Li, M., Woldawer, A., LeGrice, S.F.J. | 3.3 | X-RAY DIFFRACTION | 0.267 | 0.180 | false | false | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2fx9 | H | L | 0 | P | peptide | null | fragment of hiv glycoprotein gp41 | IMMUNE SYSTEM | 02/03/06 | Crystal structure of hiv-1 neutralizing human fab 4e10 in complex with a thioether-linked peptide encompassing the 4e10 epitope on gp41 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | null | Cardoso, R.M.F., Brunel, F.M., Ferguson, S., Burton, D.R., Dawson, P.E., Wilson, I.A. | 2.1 | X-RAY DIFFRACTION | 0.271 | 0.236 | false | true | IGHV1 | IGKV3 | Kappa | 0 | -10.59 | SPR | null | 17125793 |
4u3x | C | null | 0 | D | protein | null | lysozyme c | IMMUNE SYSTEM | 07/23/14 | Structure of a human VH antibody domain binding to the cleft of hen egg lysozyme | HOMO SAPIENS; GALLUS GALLUS | homo sapiens | null | gallus gallus | Rouet, R., Langley, D.B., Christ, D. | 2.26 | X-RAY DIFFRACTION | 0.248 | 0.189 | false | true | IGHV3 | null | null | null | null | null | null | null |
4nnp | H | L | 0 | A | protein | null | lipoprotein | TRANSPORT PROTEIN/IMMUNE SYSTEM | 11/18/13 | Crystal Structure of Apo Manganese ABC transporter MntC from Staphylococcus aureus bound to an antagonistic fab fragment | HOMO SAPIENS; STAPHYLOCOCCUS AUREUS SUBSP. AUREUS | homo sapiens | homo sapiens | staphylococcus aureus subsp. aureus | Rouge, L., Sudhamsu, J. | 2.69 | X-RAY DIFFRACTION | 0.283 | 0.224 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4xwo | I | J | 0 | G | protein | null | sec22 | HYDROLASE/TRANSPORT PROTEIN | 01/29/15 | Structure of Get3 bound to the transmembrane domain of Sec22 | HOMO SAPIENS, SYNTHETIC CONSTRUCT; SACCHAROMYCES CEREVISIAE (ATCC 204508 / S288C); SACCHAROMYCES CEREVISIAE | homo sapiens, synthetic construct | homo sapiens, synthetic construct | saccharomyces cerevisiae (atcc 204508 / s288c) | Mateja, A., Paduch, M., Chang, H.-Y., Szydlowska, A., Kossiakoff, A.A., Hegde, R.S., Keenan, R.J. | 2.75 | X-RAY DIFFRACTION | 0.247 | 0.196 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5zia | A | B | 0 | C | peptide | null | phosphorylated tau peptide | IMMUNE SYSTEM | 03/14/18 | Crystal structure of human anti-tau antibody CBTAU-24.1 in complex with its phosphorylated tau peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Zhang, H., Wilson, I.A. | 2.603 | X-RAY DIFFRACTION | 0.249 | 0.200 | false | true | IGHV1 | IGKV4 | Kappa | 0 | -8.898799 | Unknown | null | TBD |
3k80 | B | null | 0 | D | protein | null | mp18 rna editing complex protein | Immune System, RNA Binding Protein | 10/13/09 | Structure of essential protein from Trypanosoma brucei | LAMA GLAMA; TRYPANOSOMA BRUCEI | lama glama | null | trypanosoma brucei | Wu, M. | 2.4 | X-RAY DIFFRACTION | 0.277 | 0.223 | false | true | IGHV1 | null | null | null | null | null | null | null |
3lex | H | L | 0 | P | peptide | null | envelope glycoprotein gp41 | IMMUNE SYSTEM | 01/15/10 | 2F5 Epitope scaffold elicited anti-HIV-1 monoclonal antibody 11F10 in complex with HIV-1 GP41 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | human immunodeficiency virus 1 | Ofek, G., Guenaga, F.J., Schief, W.R., Skinner, J., Baker, D., Wyatt, R., Kwong, P.D. | 1.97 | X-RAY DIFFRACTION | 0.198 | 0.165 | false | false | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
3ggw | B | A | 0 | E | peptide | null | peptide b1 | IMMUNE SYSTEM | 03/02/09 | Crystal Structure of FAB F22-4 in complex with a Carbohydrate-mimetic peptide | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Saul, F.A., Vulliez-Le Normand, B., Bentley, G.A. | 1.7 | X-RAY DIFFRACTION | 0.245 | 0.197 | false | false | IGHV6 | IGKV2 | Kappa | 0.000003 | -7.55 | ITC | 25 | 19328810 |
4dkf | H | L | 0 | A | protein | null | interleukin-34 | CYTOKINE/IMMUNE SYSTEM | 02/03/12 | Crystal Structure of Human Interleukin-34 Bound to FAb2 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Ma, X., Chen, Y., Stawicki, S., Wu, Y., Bazan, J.F., Starovasnik, M.A. | 2.61 | X-RAY DIFFRACTION | 0.256 | 0.225 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -11.60786 | SPR | null | TBD |
6ug7 | H | L | 0 | H | carbohydrate | GAL | polysaccharide | IMMUNE SYSTEM | 09/26/19 | Complex of ch28/11 Fab and SSEA-4 (tetragonal form) | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Soliman, C., Ramsland, P.A. | 1.52 | X-RAY DIFFRACTION | 0.198 | 0.172 | false | true | IGHV2 | IGKV4 | Kappa | null | null | null | null | null |
6h7j | C | null | 0 | A | protein | null | beta-1 adrenergic receptor | IMMUNE SYSTEM | 07/31/18 | ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST ISOPRENALINE AND NANOBODY Nb80 | ESCHERICHIA COLI (STRAIN K12); MELEAGRIS GALLOPAVO; LAMA GLAMA | lama glama | null | meleagris gallopavo | Warne, T., Edwards, P.C., Dore, A.S., Leslie, A.G.W., Tate, c.g. | 2.8 | X-RAY DIFFRACTION | 0.317 | 0.285 | false | true | IGHV1 | null | null | null | null | null | null | null |
5jw5 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 05/11/16 | Structure of MEDI8852 Fab Fragment | HOMO SAPIENS | homo sapiens | homo sapiens | null | Neu, U., Collins, P.J., Walker, P.A., Vorlaender, M.K., Ogrodowicz, R.W., Martin, S.R., Gamblin, S.J., Skehel, J.J. | 1.9 | X-RAY DIFFRACTION | 0.217 | 0.187 | false | true | IGHV6 | IGKV1 | Kappa | null | null | null | null | null |
3qwo | H | L | 0 | P | protein | null | motavizumab epitope scaffold | Immune System | 02/28/11 | Crystal structure of a motavizumab epitope-scaffold bound to motavizumab Fab | MUS MUSCULUS; STAPHYLOCOCCUS AUREUS | mus musculus | mus musculus | staphylococcus aureus | McLellan, J.S., Kwong, P.D. | 1.9 | X-RAY DIFFRACTION | 0.231 | 0.188 | false | true | IGHV2 | IGKV1 | Kappa | 0 | -9.63 | SPR | null | 21549714 |
4gms | J | N | 0 | E | protein | null | hemagglutinin ha1 chain | VIRAL PROTEIN/IMMUNE SYSTEM | 08/16/12 | Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin | MUS MUSCULUS; INFLUENZA A VIRUS | mus musculus | mus musculus | influenza a virus | Lee, P.S., Ekiert, D.C., Wilson, I.A. | 2.95 | X-RAY DIFFRACTION | 0.233 | 0.207 | false | true | IGHV1 | IGKV6 | Kappa | 0 | -10.503274 | BLI | null | TBD |
6uum | B | A | 0 | A | carbohydrate | NAG | N-ACETYL-D-GLUCOSAMINE | IMMUNE SYSTEM | 10/30/19 | Crystal structure of antibody 438-B11 DSS mutant (Cys98A-Cys100aA) | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Kumar, S., Wilson, I.A. | 2.1 | X-RAY DIFFRACTION | 0.269 | 0.229 | false | true | unknown | IGKV3 | Kappa | null | null | null | null | null |
5uqy | P | O | 0 | M | F | protein | protein | NA | NA | envelope glycoprotein gp1 | envelope glycoprotein gp2 | VIRAL PROTEIN/IMMUNE SYSTEM | 02/08/17 | Crystal structure of Marburg virus GP in complex with the human survivor antibody MR78 | LAKE VICTORIA MARBURGVIRUS (STRAIN RAVN-87); HOMO SAPIENS | homo sapiens | homo sapiens | lake victoria marburgvirus (strain ravn-87) | lake victoria marburgvirus (strain ravn-87) | Hashiguchi, T., Fusco, M.L., Hastie, K.M., Bomholdt, Z.A., Lee, J.E., Flyak, A.I., Matsuoka, R., Kohda, D., Yanagi, Y., Hammel, M., Crowe, J.E., Saphire, E.O. | 3.6 | X-RAY DIFFRACTION | 0.262 | 0.221 | false | false | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
6n4r | L | K | 0 | C | D | H | protein | protein | peptide | NA | NA | NA | nav1.7 vsd2-navab chimera | nav1.7 vsd2-navab chimera | beta/omega-theraphotoxin-tp2a | MEMBRANE PROTEIN | 11/20/18 | CryoEM structure of Nav1.7 VSD2 (deactived state) in complex with the gating modifier toxin ProTx2 | ARCOBACTER BUTZLERI (STRAIN RM4018); HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | arcobacter butzleri (strain rm4018), homosapiens | arcobacter butzleri (strain rm4018), homosapiens | thrixopelma pruriens | Xu, H., Rohou, A., Arthur, C.P., Estevez, A., Ciferri, C., Payandeh, J., Koth, C.M. | 4.2 | ELECTRON MICROSCOPY | null | null | false | false | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
4xgz | A | B | 0 | a | peptide | null | unknown | CELL ADHESION | 01/04/15 | Crystal structure of human paxillin LD2 motif in complex with Fab fragment | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Nocula-Lugowska, M., Lugowski, M., Salgia, R., Kossiakoff, A.A. | 2.5 | X-RAY DIFFRACTION | 0.245 | 0.228 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -10.395252 | Unknown | null | TBD |
6a0x | G | H | 0 | null | null | null | null | IMMUNE SYSTEM | 06/06/18 | Crystal structure of broadly neutralizing antibody 13D4 | MUS MUSCULUS | mus musculus | mus musculus | null | Li, S., Li, T. | 2.3 | X-RAY DIFFRACTION | 0.243 | 0.205 | false | false | IGHV1 | IGKV6 | Kappa | null | null | null | null | null |
2iqa | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 10/13/06 | PFA2 FAB fragment, monoclinic apo form | MUS MUSCULUS | mus musculus | mus musculus | null | Gardberg, A.S., Dealwis, C. | 2.0 | X-RAY DIFFRACTION | 0.279 | 0.230 | false | false | IGHV8 | IGKV1 | Kappa | null | null | null | null | null |
5jny | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 05/01/16 | Crystal Structure of 10E8 Fab | HOMO SAPIENS | homo sapiens | homo sapiens | null | Ofek, G., Kwong, P. | 3.041 | X-RAY DIFFRACTION | 0.215 | 0.188 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
7jx3 | H | L | 0 | R | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 08/26/20 | Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Snell, G., Czudnochowski, N., Rosen, L.E., Nix, J.C., Corti, D., Veesler, D., Park, Y.J., Walls, A.C., Tortorici, M.A., Cameroni, E., Pinto, D., Beltramello, M. | 2.65 | X-RAY DIFFRACTION | 0.288 | 0.258 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7nvn | N | null | 0 | E | protein | null | t-complex protein 1 subunit epsilon | CHAPERONE | 03/15/21 | Human TRiC complex in closed state with nanobody and tubulin bound | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Kelly, J.J., Chi, G., Bulawa, C., Paavilainen, V.O., Bountra, C., Huiskonen, J.T., Yue, W. | 3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7kex | G | J | 0 | A | protein | null | virion spike glycoprotein 1 | VIRAL PROTEIN/IMMUNE SYSTEM | 10/13/20 | Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293 | HOMO SAPIENS; EBOLA VIRUS | homo sapiens | homo sapiens | ebola virus | Murin, C.D., Ward, A.B. | 4.25 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4z7o | E | F | 0 | C | protein | null | integrin alpha-iib | Membrane protein/Immune system | 04/07/15 | Integrin alphaIIbbeta3 in complex with AGDV peptide | HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Lin, F.Y., Zhu, J., Springer, T.A. | 2.85 | X-RAY DIFFRACTION | 0.257 | 0.223 | false | true | IGHV14 | IGKV14 | Kappa | null | null | null | null | null |
7rfc | A | B | 0 | C | protein | null | envelope glycoprotein e2 | VIRAL PROTEIN/IMMUNE SYSTEM | 07/14/21 | Crystal structure of broadly neutralizing antibody mAb1382 in complex with Hepatitis C virus envelope glycoprotein E2 ectodomain | HOMO SAPIENS; HEPACIVIRUS C | homo sapiens | homo sapiens | hepacivirus c | Flyak, A.I., Bjorkman, P.J. | 3.24 | X-RAY DIFFRACTION | 0.284 | 0.233 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7o06 | A | null | 0 | C | protein | null | centrosomal protein of 164 kda | STRUCTURAL PROTEIN | 03/25/21 | Crystal structure of the N-terminal domain of CEP164(1-109) bound to camelid nanobody 10Z | CAMELIDAE MIXED LIBRARY; HOMO SAPIENS | camelidae mixed library | null | homo sapiens | e Silva, I.R., van Breugel, M. | 1.6 | X-RAY DIFFRACTION | 0.211 | 0.180 | false | true | IGHV1 | null | null | null | null | null | null | null |
7mww | H | L | 0 | E | protein | null | core protein precursor ee2 | VIRAL PROTEIN/IMMUNE SYSTEM | 05/17/21 | Structure of hepatitis C virus envelope full-length glycoprotein 2 (eE2) from J6 genotype | HEPACIVIRUS C; MUS MUSCULUS | mus musculus | mus musculus | hepacivirus c | Kumar, A., Hossain, R.A., Yost, S.A., Bu, W., Wang, Y., Dearborn, A.D., Grakoui, A., Cohen, J.I., Marcotrigiano, J. | 2.71 | X-RAY DIFFRACTION | 0.270 | 0.218 | false | true | IGHV14 | IGKV8 | Kappa | null | null | null | null | null |
6wez | H | L | 0 | B | A | protein | protein | NA | NA | hemagglutinin | hemagglutinin | VIRAL PROTEIN/Immune System | 04/03/20 | Crystal Structure of Broadly Neutralizing Antibody 3I14-D93N Mutant Bound to the Influenza A H3 Hemagglutinin | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Harshbarger, W.D., Lockbaum, G.J., Deming, D.T., Attatippaholkun, N., Schiffer, C.A., Marasco, W.A. | 3.21 | X-RAY DIFFRACTION | 0.281 | 0.233 | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
7lmr | null | B | 0 | B | Hapten | 9ZX | 4-methyl-3-(morpholin-4-ylmethyl)-7-[(2~{S})-2-phenylpropoxy]chromen-2-one | IMMUNE SYSTEM | 02/05/21 | Structure of full-length human lambda-6A light chain JTO in complex with stabilizer 63 [4-methyl-3-(morpholinomethyl)-7-(2-phenylpropoxy)-2H-chromen-2-one] | HOMO SAPIENS | null | homo sapiens | homo sapiens | Yan, N.L., Wilson, I.A., Kelly, J.W. | 2.09 | X-RAY DIFFRACTION | 0.261 | 0.202 | false | true | null | IGLV6 | Lambda | null | null | null | null | null |
5t5n | M | L | 0 | C | protein | null | bestrophin-1 (best1) | MEMBRANE PROTEIN | 08/31/16 | Calcium-activated chloride channel bestrophin-1 (BEST1), triple mutant: I76A, F80A, F84A; in complex with an Fab antibody fragment, chloride, and calcium | GALLUS GALLUS; MUS MUSCULUS | mus musculus | mus musculus | gallus gallus | Long, S.B., Vaisey, G. | 3.1 | X-RAY DIFFRACTION | 0.243 | 0.218 | false | false | IGHV1 | IGKV12 | Kappa | null | null | null | null | null |
7dge | C | null | 0 | A | protein | null | metabotropic glutamate receptor 1 | MEMBRANE PROTEIN | 11/11/20 | intermediate state of class C GPCR | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Zhang, J.Y., Wu, L.J., Luo, F., Hua, T., Liu, Z.J. | 3.65 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
3chn | B | M | 1 | null | null | null | null | IMMUNE SYSTEM | 03/10/08 | Solution structure of human secretory IgA1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING / HOMOLOGY MODEL | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6and | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 08/12/17 | Pinatuzumab Fab in complex with anti-Kappa VHH domain | LAMA GLAMA; HOMO SAPIENS | homo sapiens | homo sapiens | null | Ereno-Orbea, J., Sicard, T., Julien, J.-P. | 1.75 | X-RAY DIFFRACTION | 0.290 | 0.241 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -11.061162 | Unknown | null | TBD |
5vyf | B | A | 0 | C | protein | null | chimera of major allergen i polypeptide chain 2,majorallergen i polypeptide chain 1 | IMMUNE SYSTEM | 05/25/17 | Structure of single chain Fel d 1 bound to a neutralizing antibody | MUS MUSCULUS; FELIS CATUS | mus musculus | mus musculus | felis catus | Franklin, M.C. | 2.9 | X-RAY DIFFRACTION | 0.259 | 0.225 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -13.271583 | SPR | null | TBD |
6cue | M | N | 0 | C | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 03/26/18 | Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody vFP7.04 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | HUMAN IMMUNODEFICIENCY VIRUS 1; MUS MUSCULUS; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Carragher, B., Potter, C.S., Kwong, P.D. | 4.0 | ELECTRON MICROSCOPY | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
6nc2 | H | L | 0 | B | A | protein | protein | NA | NA | amc011 v4.2 sosip gp41 | amc011 v4.2 sosip gp120 | IMMUNE SYSTEM | 12/10/18 | AMC011 v4.2 SOSIP Env trimer in complex with fusion peptide targeting antibody ACS202 fragment antigen binding | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Cottrell, C.A., Ozorowski, G., Yuan, M., Copps, J., Wilson, I.A., Ward, A.B. | 5.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6u85 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 09/04/19 | Site-specific lysine arylation as an alternative bioconjugation strategy for chemically programmed antibodies and antibody-drug conjugates | HOMO SAPIENS | homo sapiens | homo sapiens | null | Park, H., Rader, C. | 2.78 | X-RAY DIFFRACTION | 0.259 | 0.211 | false | true | IGHV6 | IGKV1 | Kappa | null | null | null | null | null |
6vca | K | J | 0 | C | protein | null | 5'-nucleotidase, ecto (cd73), isoform cra_a | IMMUNE SYSTEM | 12/20/19 | TB38 complex | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Zhou, Y.F., Lord, D.M. | 3.73 | X-RAY DIFFRACTION | 0.264 | 0.224 | false | true | IGHV3 | IGLV8 | Lambda | null | null | null | null | null |
2q76 | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 06/06/07 | Mouse anti-hen egg white lysozyme antibody F10.6.6 Fab fragment | MUS MUSCULUS | mus musculus | mus musculus | null | Cauerhff, A., Klinke, S., Acierno, J.P., Goldbaum, F.A., Braden, B.C. | 2.0 | X-RAY DIFFRACTION | 0.233 | 0.196 | false | false | IGHV1 | IGKV5 | Kappa | null | null | null | null | null |
6pxg | E | F | 0 | null | null | null | null | IMMUNE SYSTEM | 07/26/19 | Crystal Structure of MERS-CoV neutralizing antibody G2 Fab | MUS MUSCULUS | mus musculus | mus musculus | null | Wang, N., McLellan, J.S. | 2.1 | X-RAY DIFFRACTION | 0.225 | 0.181 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
5f6j | H | F | 0 | E | protein | null | envelope glycoprotein gp120 of hiv-1 clade c | Viral Protein/Immue System | 12/06/15 | Crystal Structure of Tier 2 Neutralizing Antibody DH427 from a Rhesus Macaque in Complex with HIV-1 gp120 Core | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Fera, D., Harrison, S.C. | 6.63 | X-RAY DIFFRACTION | 0.305 | 0.256 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
7l7e | H | L | 0 | S | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 12/28/20 | Crystal structure of SARS-CoV-2 spike RBD in complex with human monoclonal antibodies AZD8895 and AZD1061 | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Dong, J., Crowe, J.E. | 3.0 | X-RAY DIFFRACTION | 0.273 | 0.215 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4m3j | B | null | 0 | null | null | null | null | IMMUNE SYSTEM | 08/06/13 | Structure of a single-domain camelid antibody fragment cAb-H7S specific of the BlaP beta-lactamase from Bacillus licheniformis | LAMA GLAMA | lama glama | null | null | Pain, C., Kerff, F., Herman, R., Sauvage, E., Preumont, S., Charlier, P., Dumoulin, M. | 1.95 | X-RAY DIFFRACTION | 0.252 | 0.206 | false | true | IGHV1 | null | null | null | null | null | null | null |
2uyl | W | V | 0 | null | null | null | null | IMMUNE SYSTEM | 04/10/07 | Crystal structure of a monoclonal antibody directed against an antigenic determinant common to Ogawa and Inaba serotypes of Vibrio cholerae O1 | MUS MUSCULUS | mus musculus | mus musculus | null | Ahmed, F., Haouz, A., Nato, F., Fournier, J.M., Alzari, P.M. | 2.5 | X-RAY DIFFRACTION | 0.257 | 0.211 | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
4kzd | H | L | 0 | R | nucleic-acid | null | rna (84-mer) | immune system/rna | 05/29/13 | Crystal structure of an RNA aptamer in complex with fluorophore and Fab | MUS MUSCULUS; SYNTHETIC CONSTRUCT | null | mus musculus | null | Huang, H., Suslov, N.B., Li, N., Koldobskaya, Y., Rice, P.A., Piccirilli, J.A. | 2.186 | X-RAY DIFFRACTION | 0.211 | 0.179 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6pzw | J | G | 0 | B | protein | null | neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 08/01/19 | CryoEM derived model of NA-22 Fab in complex with N9 Shanghai2 | INFLUENZA A VIRUS (A/ENVIRONMENT/SHANGHAI/S1439/2013(H7N9)); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus(a/environment/shanghai/s1439/2013(h7n9)) | Ward, A.B., Turner, H.L., Zhu, X. | 3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
5dmj | G | null | 0 | F | protein | null | tumor necrosis factor receptor superfamily member 5 | IMMUNE SYSTEM/SIGNALING PROTEIN | 09/08/15 | Structure of the extracellular domain of the CD40 in complex with 3H56-5 DAB | HOMO SAPIENS | homo sapiens | null | homo sapiens | Sheriff, S. | 2.79 | X-RAY DIFFRACTION | 0.258 | 0.229 | false | true | IGHV3 | null | null | 0 | -11.290108 | SPR | null | TBD |
5vj6 | H | L | 0 | E | protein | null | envelope glycoprotein gp160 | VIRAL PROTEIN/IMMUNE SYSTEM | 04/18/17 | BG505 SOSIP.664 in complex with broadly neutralizing antibodies PG9 and 8ANC195 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Wang, H., Bjorkman, P.J. | 11.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
5nbl | E | null | 0 | C | B | protein | protein | NA | NA | actin | actin-related protein 4 | HYDROLASE | 03/02/17 | Crystal structure of the Arp4-N-actin(APO-state) heterodimer bound by a nanobody | SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C); VICUGNA PACOS; TRICHOPLUSIA NI | vicugna pacos | null | saccharomyces cerevisiae (strain atcc 204508 /s288c) | saccharomyces cerevisiae (strain atcc 204508 /s288c) | Knoll, K.R., Eustermann, S., Hopfner, K.P. | 2.8 | X-RAY DIFFRACTION | 0.204 | 0.171 | false | true | IGHV1 | null | null | null | null | null | null | null |
5nb5 | I | M | 0 | null | null | null | null | IMMUNE SYSTEM | 03/01/17 | Principles for computational design of antibodies | ESCHERICHIA COLI | null | null | null | Dym, O., Fleishman, S.J. | 3.0 | X-RAY DIFFRACTION | 0.257 | 0.223 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7n8h | E | D | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 06/14/21 | SARS-CoV-2 S (B.1.429 / epsilon variant) + S2M11 + S2L20 Global Refinement | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 2.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
5kov | K | k | 0 | H | protein | null | capsid polyprotein vp90 | VIRAL PROTEIN | 07/01/16 | Crystal structure of the human astrovirus 2 capsid protein spike in complex with a single chain variable fragment of an astrovirus neutralizing antibody at 3.24-A resolution | HUMAN ASTROVIRUS-2; MUS MUSCULUS | mus musculus | null | human astrovirus-2 | Bogdanoff, W.A., DuBois, R.M. | 3.245 | X-RAY DIFFRACTION | 0.288 | 0.241 | true | true | unknown | unknown | unknown | 0 | -11.907338 | SPR | null | TBD |
7a4d | G | null | 0 | K | peptide | null | aph coiled-coil | DE NOVO PROTEIN | 08/19/20 | Crystal structure of the APH coiled-coil in complex with nanobodies Nb28 and Nb30 | LAMA GLAMA; SYNTHETIC CONSTRUCT | lama glama | null | synthetic construct | Hadzi, S. | 2.694 | X-RAY DIFFRACTION | 0.223 | 0.177 | false | true | IGHV1 | null | null | null | null | null | null | null |
6f0d | B | null | 0 | null | null | null | null | IMMUNE SYSTEM | 11/19/17 | Crystal structure of a llama VHH antibody BCD090-M2 against human ErbB3 in space group P1 with cadmium ions | LAMA GLAMA | lama glama | null | null | Eliseev, I.E., Yudenko, A.N., Vysochinskaya, V.V., Svirina, A.A., Evstratyeva, A.V., Drozhzhachih, M.S., Krendeleva, E.A., Vladimirova, A.K., Nemankin, T.A., Ekimova, V.M., Ulitin, A.B., Lomovskaya, M.I., Yakovlev, P.A., Moiseenko, F.V., Chakchir, O.B. | 1.90001 | X-RAY DIFFRACTION | 0.218 | 0.174 | false | true | IGHV1 | null | null | null | null | null | null | null |
5nbm | E | null | 0 | C | B | protein | protein | NA | NA | actin | actin-related protein 4 | HYDROLASE | 03/02/17 | Crystal structure of the Arp4-N-actin(ATP-state) heterodimer bound by a nanobody | SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C); VICUGNA PACOS; TRICHOPLUSIA NI | vicugna pacos | null | saccharomyces cerevisiae (strain atcc 204508 /s288c) | saccharomyces cerevisiae (strain atcc 204508 /s288c) | Knoll, K.R., Eustermann, S., Hopfner, K.P. | 3.4 | X-RAY DIFFRACTION | 0.193 | 0.152 | false | true | IGHV1 | null | null | null | null | null | null | null |
1aif | H | L | 0 | null | null | null | null | IMMUNOGLOBULIN | 11/14/94 | ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB FROM MOUSE | MUS MUSCULUS | mus musculus | mus musculus | null | Ban, N., Escobar, C., Hasel, K., Day, J., Greenwood, A., McPherson, A. | 2.9 | X-RAY DIFFRACTION | unknown | 0.220 | false | false | IGHV6 | IGKV4 | Kappa | null | null | null | null | null |
6dzv | B | C | 0 | A | protein | null | sodium-dependent serotonin transporter | TRANSPORT PROTEIN/IMMUNE SYSTEM | 07/05/18 | Wild type human serotonin transporter in complex with 15B8 Fab bound to ibogaine in occluded conformation | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Coleman, J.A., Yang, D., Gouaux, E. | 4.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6qn8 | E | F | 0 | null | null | null | null | IMMUNE SYSTEM | 02/10/19 | Structure of bovine anti-RSV Fab B13 | BOS TAURUS | bos taurus | bos taurus | null | Ren, J., Nettleship, J.E., Harris, G., Mwangi, W., Rhaman, N., Grant, C., Kotecha, A., Fry, E., Charleston, B., Stuart, D.I., Hammond, J., Owens, R.J. | 2.12 | X-RAY DIFFRACTION | 0.267 | 0.235 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
6e5p | S | T | 0 | C | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 07/21/18 | Backbone model based on cryo-EM map at 8.5 A of domain-swapped, glycan-reactive, neutralizing antibody 2G12 bound to HIV-1 Env BG505 DS-SOSIP, which was also bound to CD4-binding site antibody VRC03 | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Kwong, P.D. | 8.8 | ELECTRON MICROSCOPY | null | null | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
6jht | E | D | 0 | C | protein | null | vp3 | VIRUS | 02/19/19 | The cryo-EM structure of HAV bound to a neutralizing antibody-F9 | HUMAN HEPATITIS A VIRUS HU/AUSTRALIA/HM175/1976 | human hepatitis a virushu/australia/hm175/1976 | human hepatitis a virushu/australia/hm175/1976 | human hepatitis a virushu/australia/hm175/1976 | Cao, L., Liu, P., Yang, P., Gao, Q., Li, H., Sun, Y., Zhu, L., Lin, J., Su, D., Rao, Z., Wang, X. | 3.79 | ELECTRON MICROSCOPY | null | null | false | false | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
6bzu | C | D | 0 | I | peptide | null | e2 as412 peptide | IMMUNE SYSTEM | 12/26/17 | Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the broadly neutralizing antibody 19B3 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | hepatitis c virus | Tzarum, N., Alemn, F., Kong, L., Wilson, I.A., Law, M. | 2.7 | X-RAY DIFFRACTION | 0.290 | 0.265 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
5tkj | A | B | 0 | C | peptide | null | hiv-1 fusion peptide residue 512-519 | IMMUNE SYSTEM | 10/06/16 | Structure of vaccine-elicited diverse HIV-1 neutralizing antibody vFP1.01 in complex with HIV-1 fusion peptide residue 512-519 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | human immunodeficiency virus 1 | Xu, K., Liu, K., Kwong, P.D. | 2.118 | X-RAY DIFFRACTION | 0.241 | 0.198 | false | true | IGHV1 | IGKV1 | Kappa | 0 | -11.112715 | Unknown | null | TBD |
6g8r | A | a | 0 | null | null | null | null | PEPTIDE BINDING PROTEIN | 04/09/18 | SP140 PHD-Bromodomain complex with scFv | HOMO SAPIENS | homo sapiens | null | null | Fairhead, M., Graslund, S., Strain-Damerell, C., Picaud, S.S., Pike, A.C.W., Pinkas, D.M., Wigren, E., Preger, C., Persson Lotsholm, H., Ossipova, E., Filippakopoulos, P., Burgess-Brown, N.A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., von Delft, F., Structural Genomics Consortium (SGC) | 2.74 | X-RAY DIFFRACTION | 0.266 | 0.226 | true | true | unknown | unknown | unknown | null | null | null | null | null |
3zhl | A | null | 0 | null | null | null | null | null | 12/22/12 | The crystal structure of single domain antibody 8-14 scaffold | ESCHERICHIA COLI | null | null | null | Song, H.-N., Woo, E.-J., Lim, H.-K. | 2.47 | X-RAY DIFFRACTION | 0.2458 | 0.1916 | false | true | IGHV3 | null | null | null | null | null | null | null |
3wsq | H | L | 0 | A | protein | null | receptor tyrosine-protein kinase erbb-2 | TRANSFERASE/IMMUNE SYSTEM | 03/20/14 | Structure of HER2 with an Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Fu, W.Y., Wang, Y.X., Zhou, L.J. | 3.5 | X-RAY DIFFRACTION | 0.258 | 0.221 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
5kn5 | D | E | 0 | F | peptide | null | protransforming growth factor alpha | IMMUNE SYSTEM | 06/27/16 | TGFalpha/Epiregulin complex with neutralizing antibody LY3016859 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Atwell, S., Boyles, J.S., Clawson, D.K., Druzina, Z., Josef, G.H., Weichert, K., Witcher, D.R. | 2.8 | X-RAY DIFFRACTION | 0.263 | 0.206 | false | true | IGHV1 | IGKV4 | Kappa | 0 | -13.630708 | Unknown | null | TBD |
6cse | H | L | 0 | M | protein | null | sodium/alanine symporter agcs | MEMBRANE PROTEIN | 03/20/18 | Crystal structure of sodium/alanine symporter AgcS with L-alanine bound | METHANOCOCCUS MARIPALUDIS (STRAIN S2 / LL); MUS MUSCULUS | mus musculus | mus musculus | methanococcus maripaludis (strain s2 / ll) | Ma, J., Reyes, F.E., Gonen, T. | 3.24 | X-RAY DIFFRACTION | 0.251 | 0.230 | false | false | IGHV6 | IGKV12 | Kappa | null | null | null | null | null |
7m7h | E | F | 0 | B | protein | null | eryai,6-deoxyerythronolide-b synthase erya3, modules 5 and6 chimera | BIOSYNTHETIC PROTEIN/IMMUNE SYSTEM | 03/28/21 | 6-Deoxyerythronolide B synthase (DEBS) module 1 in complex with antibody fragment 1B2: State 1' | SACCHAROPOLYSPORA ERYTHRAEA; HOMO SAPIENS | homo sapiens | homo sapiens | saccharopolyspora erythraea | Cogan, D.P., Zhang, K., Chiu, W., Khosla, C. | 4.1 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
7k8t | O | P | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 09/27/20 | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C002 (state 1) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Malyutin, A.G., Barnes, C.O., Bjorkman, P.J. | 3.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
3mcg | null | 1 | 0 | null | null | null | null | IMMUNOGLOBULIN | 05/09/89 | THREE-DIMENSIONAL STRUCTURE OF A LIGHT CHAIN DIMER CRYSTALLIZED IN WATER. CONFORMATIONAL FLEXIBILITY OF A MOLECULE IN TWO CRYSTAL FORMS | HOMO SAPIENS | null | homo sapiens | null | Ely, K.R., Herron, J.N., Edmundson, A.B. | 2.0 | X-RAY DIFFRACTION | unknown | unknown | false | true | null | IGLV2 | Lambda | null | null | null | null | null |
6qnk | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 02/11/19 | Antibody FAB fragment targeting Gi protein heterotrimer | MUS MUSCULUS | mus musculus | mus musculus | null | Tsai, C.-J., Muehle, J., Pamula, F., Dawson, R.J.P., Maeda, S., Deupi, X., Schertler, G.F.X. | 1.9 | X-RAY DIFFRACTION | 0.212 | 0.180 | false | true | IGHV5 | IGKV2 | Kappa | null | null | null | null | null |
5zia | D | E | 0 | F | peptide | null | phosphorylated tau peptide | IMMUNE SYSTEM | 03/14/18 | Crystal structure of human anti-tau antibody CBTAU-24.1 in complex with its phosphorylated tau peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Zhang, H., Wilson, I.A. | 2.603 | X-RAY DIFFRACTION | 0.249 | 0.200 | false | true | IGHV1 | IGKV4 | Kappa | 0 | -8.898799 | Unknown | null | TBD |
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