pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7kqg | B | C | 0 | A | protein | null | hemagglutinin | IMMUNE SYSTEM/VIRAL PROTEIN | 11/16/20 | Antibodies that engage the hemagglutinin receptor-binding site of influenza B viruses | INFLUENZA B VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza b virus | Bajic, G., Harrison, S.C. | 2.6 | X-RAY DIFFRACTION | 0.280 | 0.232 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6x8u | H | L | 0 | P | peptide | null | mixed peptide | IMMUNE SYSTEM | 06/01/20 | Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein Mixed peptide | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | plasmodium berghei anka | Thai, E., Julien, J.P. | 1.55 | X-RAY DIFFRACTION | 0.180 | 0.164 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6ous | O | P | 0 | D | C | protein | protein | NA | NA | fusion glycoprotein f1 fused with fibritin trimerizationdomain | fusion glycoprotein f2 | VIRAL PROTEIN/Immune system | 05/05/19 | Structure of fusion glycoprotein from human respiratory syncytial virus | HUMAN RESPIRATORY SYNCYTIAL VIRUS A2; HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human respiratory syncytial virus a2, humanimmunodeficiency virus 1 | human respiratory syncytial virus a2 | Su, H.P. | 3.4 | X-RAY DIFFRACTION | 0.275 | 0.245 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5any | J | N | 0 | D | C | protein | protein | NA | NA | e2 | e1 | VIRUS | 09/08/15 | Electron cryo-microscopy of chikungunya virus in complex with neutralizing antibody Fab CHK265 | CHIKUNGUNYA VIRUS; MUS MUSCULUS | mus musculus | mus musculus | chikungunya virus | chikungunya virus | Fox, J.M., Long, F., Edeling, M.A., Lin, H., Duijl-Richter, M., Fong, R.H., Kahle, K.M., Smit, J.M., Jin, J., Simmons, G., Doranz, B.J., Crowe, J.E., Fremont, D.H., Rossmann, M.G., Diamond, M.S. | 16.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV9 | IGLV1 | Lambda | null | null | null | null | null |
4pou | B | null | 0 | A | protein | null | ribonuclease pancreatic | Hydrolase/Immune System | 02/26/14 | VHH-metal in Complex with RNase A | LAMA GLAMA; BOS TAURUS | lama glama | null | bos taurus | Fanning, S.W., Walter, R., Horn, J.R. | 1.75 | X-RAY DIFFRACTION | 0.230 | 0.182 | false | true | IGHV1 | null | null | 0 | -9.282454 | ITC | null | TBD |
2jix | F | A | 0 | C | B | protein | protein | NA | NA | erythropoietin receptor | erythropoietin receptor | RECEPTOR/IMMUNE SYSTEM | 07/02/07 | Crystal structure of ABT-007 FAB fragment with the soluble domain of EPO receptor | ESCHERICHIA COLI; HOMO SAPIENS | null | null | homo sapiens | homo sapiens | Liu, Z., Stoll, V.S., DeVries, P., Jakob, C.G., Xie, N., Simmer, R.L., Lacy, S.E., Egan, D.A., Harlan, J.E., Lesniewski, R.R., Reilly, E.B. | 3.2 | X-RAY DIFFRACTION | 0.323 | 0.257 | false | true | IGHV4 | IGKV1 | Kappa | 0 | -10.26 | SPR | null | 17620453 |
6nmu | B | A | 0 | C | protein | null | tyrosine-protein phosphatase non-receptor type substrate 1 | IMMUNE SYSTEM | 01/11/19 | Kick-Off Fab 115 anti-SIRP-alpha antibody in complex with SIRP-alpha Variant 1 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Wibowo, A.S., Carter, J.J., Sim, J. | 2.55 | X-RAY DIFFRACTION | 0.261 | 0.193 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
1bzq | M | null | 0 | C | protein | null | protein (rnase a) | HYDROLASE/IMMUNE SYSTEM | 11/03/98 | COMPLEX OF A DROMEDARY SINGLE-DOMAIN VHH ANTIBODY FRAGMENT WITH RNASE A | CAMELUS DROMEDARIUS; BOS TAURUS | camelus dromedarius | null | bos taurus | Decanniere, K., Desmyter, A., Gahroudhi, M., Lauwereys, M., Muyldermans, S., Wyns, L. | 2.8 | X-RAY DIFFRACTION | 0.282 | 0.222 | false | true | IGHV1 | null | null | null | null | null | null | null |
7mxe | M | O | 0 | C | P | protein | protein | NA | NA | hiv-1 envelope glycoprotein bg505 sosip.664 gp41 | envelope glycoprotein bg505 sosip.664 gp120 | ANTIVIRAL PROTEIN/VIRAL PROTEIN | 05/19/21 | Ab1245 Fab in complex with BG505 SOSIP.664 and 8ANC195 Fab | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1; MACACA MULATTA | homo sapiens | homo sapiens | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Abernathy, M.E., Bjorkman, P.J. | 3.7 | ELECTRON MICROSCOPY | null | null | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
7bu8 | J | K | 0 | C | protein | null | genome polyprotein | VIRUS | 05/13/20 | Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5 | HOMO SAPIENS; ZIKA VIRUS ZIKV/H. SAPIENS/FRENCHPOLYNESIA/10087PF/2013 | homo sapiens | homo sapiens | zika virus zikv/h.sapiens/frenchpolynesia/10087pf/2013 | Zhang, S., Chew, S.V., Lim, X.N., Ng, T.S., Kostyuchenko, V.A., Lok, S.M. | 3.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6zqk | C | null | 0 | null | null | null | null | ANTITUMOR PROTEIN | 07/09/20 | HER2-binding scFv-Fab fusion 841 | MUS MUSCULUS | mus musculus | null | null | Kast, F., Schwill, M., Stueber, J.C., Pfundstein, S., Nagy-Davidescu, G., Monne Rodriguez, J.M., Seehusen, F., Richter, C.P., Honegger, A., Hartmann, K.P., Weber, T.G., Kroener, F., Ernst, P., Piehler, J., Plueckthun, A. | 2.2 | X-RAY DIFFRACTION | 0.241 | 0.202 | false | true | IGHV3 | null | null | null | null | null | null | null |
7ns6 | T | null | 0 | I | protein | null | spike glycoprotein,fibritin | VIRAL PROTEIN | 03/05/21 | SARS-CoV-2 Spike (dimers) in complex with six Fu2 nanobodies | VICUGNA PACOS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; ENTEROBACTERIA PHAGE T4 | vicugna pacos | null | severe acute respiratory syndrome coronavirus2, enterobacteria phage t4 | Das, H., Hallberg, B.M. | 3.18 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7lo6 | L | K | 0 | A | protein | null | envelope glycoprotein bg505 sosip.664 gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 02/09/21 | Structure of CD4 mimetic BNM-III-170 in complex with BG505 SOSIP.664 HIV-1 Env trimer and 17b Fab | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Jette, C.A., Bjorkman, P.J. | 3.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4plj | H | L | 0 | A | protein | null | capsid protein | VIRAL PROTEIN/IMMUME SYSTEM | 05/18/14 | Hepatitis E Virus E2s domain (Genotype IV) in complex with a neutralizing antibody 8G12 | HEPATITIS E VIRUS; MUS MUSCULUS | mus musculus | mus musculus | hepatitis e virus | Tang, X.H., Li, S.W., Sivaraman, J. | 2.3 | X-RAY DIFFRACTION | 0.242 | 0.187 | false | false | IGHV1 | IGKV12 | Kappa | null | null | null | null | null |
3mug | J | I | 0 | I | carbohydrate | NAG | polysaccharide | IMMUNE SYSTEM | 05/03/10 | Crystal structure of human Fab PG16, a broadly reactive and potent HIV-1 neutralizing antibody | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Pejchal, R., Walker, L.M., Burton, D.R., Wilson, I.A. | 2.49 | X-RAY DIFFRACTION | 0.248 | 0.207 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
4hqq | H | L | 0 | null | null | null | null | Immune System | 10/25/12 | Crystal structure of RV144-elicited antibody CH58 | HOMO SAPIENS | homo sapiens | homo sapiens | null | McLellan, J.S., Haynes, B.F., Kwong, P.D. | 2.4 | X-RAY DIFFRACTION | 0.225 | 0.183 | false | true | IGHV5 | IGLV6 | Lambda | null | null | null | null | null |
4lci | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/21/13 | Anti canine CD28 antibody, 1C6 | CANIS LUPUS FAMILIARIS | canis lupus familiaris | canis lupus familiaris | null | Gewe, M.M., Rupert, P.B., Strong, R.K. | 1.9 | X-RAY DIFFRACTION | 0.230 | 0.179 | false | true | IGHV9 | IGKV2 | Kappa | null | null | null | null | null |
5feh | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 12/17/15 | Crystal structure of PCT64_35B, a broadly neutralizing anti-HIV antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Murrell, S., Wilson, I.A. | 3.1 | X-RAY DIFFRACTION | 0.279 | 0.259 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
4kk6 | E | F | 0 | B | protein | null | h(+)/cl(-) exchange transporter clca | TRANSPORT PROTEIN | 05/05/13 | Structure of CLC-ec1 deltaNC construct in 20mM Bromide | ESCHERICHIA COLI; MUS MUSCULUS | mus musculus | mus musculus | escherichia coli | Lim, H.-H., Miller, C. | 3.183 | X-RAY DIFFRACTION | 0.269 | 0.235 | false | true | IGHV4 | IGKV4 | Kappa | null | null | null | null | null |
5wdf | A | B | 0 | Q | peptide | null | hiv-1 gp41 peptide | IMMUNE SYSTEM | 07/05/17 | Crystal structure of 10E8v4-5R+100cF Fab in complex with HIV-1 gp41 peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Kwon, Y.D., Kwong, P.D. | 3.1 | X-RAY DIFFRACTION | 0.281 | 0.247 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
6e1k | F | E | 0 | A | protein | null | two pore calcium channel protein 1 | MEMBRANE PROTEIN | 07/10/18 | Structure of AtTPC1(DDE) reconstituted in saposin A with cat06 Fab | ARABIDOPSIS THALIANA; HOMO SAPIENS | homo sapiens | homo sapiens | arabidopsis thaliana | Kintzer, A.F., Green, E.M., Cheng, Y., Stroud, R.M. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6obz | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 03/21/19 | Crystal structure of FluA-20 Fab | HOMO SAPIENS | homo sapiens | homo sapiens | null | Wilson, I.A., Lang, S. | 1.73 | X-RAY DIFFRACTION | 0.238 | 0.202 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
7czz | I | M | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/09/20 | S protein of SARS-CoV-2 in complex bound with P5A-2F11_3B | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Yan, R.H., Zhang, Y.Y., Li, Y.N., Zhou, Q. | 3.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
5fec | H | L | 0 | I | protein | null | 426c.tm4deltav1-3 gp120 | IMMUNE SYSTEM | 12/16/15 | Crystal structure of 3BNC60 Fab germline precursor in complex with 426c.TM4deltaV1-3 gp120 | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Scharf, L., Bjorkman, P.J. | 3.17 | X-RAY DIFFRACTION | 0.266 | 0.202 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7n0x | H | L | 0 | G | peptide | null | glycoprotein 120 | IMMUNE SYSTEM | 05/26/21 | Rhesusized RV144 DH827 Fab bound to HIV-1 Env V2 peptide | MACACA MULATTA; SYNTHETIC CONSTRUCT | macaca mulatta | macaca mulatta | human immunodeficiency virus 1 | Tolbert, W.D., Pazgier, M. | 2.0 | X-RAY DIFFRACTION | 0.209 | 0.181 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
3jbq | h | l | 0 | B | protein | null | phosphodiesterase 5/6 chimera catalytic domain | HYDROLASE/IMMUNE SYSTEM | 09/17/15 | Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6 | MUS MUSCULUS; BOS TAURUS | mus musculus | mus musculus | bos taurus | Zhang, Z., He, F., Constantine, R., Baker, M.L., Baehr, W., Schmid, M.F., Wensel, T.G., Agosto, M.A. | 11 | ELECTRON MICROSCOPY | null | null | false | false | IGHV14 | IGKV6 | Kappa | null | null | null | null | null |
4iml | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 01/03/13 | CrossFab binding to human Angiopoietin 2 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Fenn, S., Schiller, C., Griese, J., Hopfner, K.-P., Kettenberger, H. | 2.931 | X-RAY DIFFRACTION | 0.269 | 0.237 | false | true | IGHV1 | IGLV3 | Lambda | null | null | null | null | null |
7oan | G | null | 0 | B | protein | null | spike glycoprotein | ANTIVIRAL PROTEIN | 04/19/21 | Nanobody C5 bound to Spike | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; VICUGNA PACOS | vicugna pacos | null | severe acute respiratory syndrome coronavirus2 | Naismith, J.H., Weckener, M. | 3.0 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7kd6 | O | P | 0 | Q | protein | null | insulin receptor subunit alpha | SIGNALING PROTEIN | 10/08/20 | Insulin Receptor L1-CR plus alphaCT fragment in co-complex with Fv 83-7 and single-chain insulin SCI-b | HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Lawrence, M.C., Menting, J.G. | 2.6 | X-RAY DIFFRACTION | 0.221 | 0.189 | false | true | IGHV2 | IGKV8 | Kappa | null | null | null | null | null |
6i07 | A | a | 0 | C | protein | null | epithelial cell adhesion molecule | IMMUNE SYSTEM | 10/25/18 | Crystal structure of EpCAM in complex with scFv | HOMO SAPIENS | homo sapiens | null | homo sapiens | Casaletto, J.B., Geddie, M.L., Abu-Yousif, A.O., Masson, K., Fulgham, A., Boudot, A., Maiwald, T., Kearns, J.D., Kohli, N., Su, S., Razlog, M., Raue, A., Kalra, A., Hakansson, M., Logan, D.T., Welin, M., Chattopadhyay, S., Harms, B.D., Nielsen, U.B., Schoeberl, B., Lugovskoy, A.A., MacBeath, G. | 2.35 | X-RAY DIFFRACTION | 0.279 | 0.230 | true | true | unknown | unknown | unknown | null | null | null | null | null |
5a8h | L | K | 0 | G | protein | null | hiv-1 gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 07/15/15 | cryo-ET subtomogram averaging of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Scharf, L., Wang, H., Gao, H., Chen, S., McDowall, A., Bjorkman, P. | 23.0 | ELECTRON MICROSCOPY | null | null | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
6df0 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 05/13/18 | anti-phosphotyrosine antibody 4G10-4D5 Fab complexed with sulfate | SYNTHETIC CONSTRUCT | synthetic construct | synthetic construct | null | Mou, K., Leung, K., Wells, J.A. | 2.3 | X-RAY DIFFRACTION | 0.244 | 0.200 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6mpg | W | B | 0 | U | protein | null | envelope glycoprotein gp41 | VIRAL PROTEIN | 10/06/18 | Cryo-EM structure at 3.2 A resolution of HIV-1 fusion peptide-directed antibody, A12V163-b.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122 | MACACA MULATTA; HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | macaca mulatta | macaca mulatta | human immunodeficiency virus 1 | Acharya, P., Kwong, P.D. | 3.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
5thr | N | K | 0 | E | protein | null | bg505 sosip gp120 | VIRAL PROTEIN | 09/30/16 | Cryo-EM structure of a BG505 Env-sCD4-17b-8ANC195 complex | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Wang, H., Bjorkman, P.J. | 8.9, 8.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7pqz | H | L | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN | 09/20/21 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with FI-3A and FD-11A Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Ren, J., Stuart, D.I. | 3.2 | X-RAY DIFFRACTION | 0.240 | 0.201 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6mn7 | H | h | 0 | D | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 10/01/18 | Cryo-EM structure of BG505.SOSIP.664 in complex with BF520.1 antigen binding fragment | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | null | human immunodeficiency virus 1 | Williams, J.A., Lee, K.K., Overbaugh, J. | 4.8 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
6jb2 | A | null | 0 | B | protein | null | lysozyme c | IMMUNE SYSTEM/HYDROLASE | 01/25/19 | Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme | CAMELUS DROMEDARIUS; GALLUS GALLUS | camelus dromedarius | null | gallus gallus | Caaveiro, J.M.M., Tamura, H., Akiba, H., Tsumoto, K. | 1.5 | X-RAY DIFFRACTION | 0.165 | 0.125 | false | true | IGHV1 | null | null | null | null | null | null | null |
5jo5 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 05/02/16 | Crystal structure of 10E8 gHV-gLV antigen-binding fragment. | HOMO SAPIENS | homo sapiens | homo sapiens | null | Joyce, M.G., Mascola, J.R., Kwong, P.D. | 1.7 | X-RAY DIFFRACTION | 0.263 | 0.233 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
3nig | E | F | 0 | C | protein | null | integrin alpha-iib | CELL ADHESION/BLOOD CLOTTING | 06/15/10 | The Closed Headpiece of Integrin IIb 3 and its Complex with an IIb 3 -Specific Antagonist That Does Not Induce Opening | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Zhu, J.H., Zhu, J.Q., Springer, T.A. | 2.25 | X-RAY DIFFRACTION | 0.212 | 0.172 | false | true | IGHV14 | IGKV14 | Kappa | null | null | null | null | null |
6w1c | I | M | 0 | F | B | protein | protein | NA | NA | e2 glycoprotein | e1 glycoprotein | VIRUS/IMMUNE SYSTEM | 03/04/20 | Human mAbs broadly protect against infection of arthritiogenic alphaviruses by recognizing conserved elements of the MXR8 receptor binding domain | MAYARO VIRUS (STRAIN BRAZIL); HOMO SAPIENS | homo sapiens | homo sapiens | mayaro virus (strain brazil) | mayaro virus (strain brazil) | Miller, A.S., Kuhn, R.J. | 5.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV9 | IGLV1 | Lambda | null | null | null | null | null |
6ea5 | H | L | 0 | F | A | protein | protein | NA | NA | glycoprotein | envelope glycoprotein | VIRAL PROTEIN/immune system | 08/02/18 | Structure of BDBV GPcl in complex with the pan-ebolavirus mAb ADI-15878 | BUNDIBUGYO EBOLAVIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | bundibugyo ebolavirus | bundibugyo ebolavirus | King, L.B., West, B.R., Moyer, C.L., Fusco, M.L., Milligan, J.C., Hui, S., Saphire, E.O. | 4.75 | X-RAY DIFFRACTION | 0.305 | 0.295 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7whk | E | null | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 12/30/21 | The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | Zhan, W.Q., Zhang, X., Chen, Z.G., Sun, L. | 3.01 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6ikm | D | d | 0 | null | null | null | null | ANTIMICROBIAL PROTEIN | 10/16/18 | Crystal structure of SpuE-Spermidine in complex with ScFv5 | PSEUDOMONAS AERUGINOSA; HOMO SAPIENS | pseudomonas aeruginosa | homo sapiens | null | Wu, D., Sun, X. | 3.398 | X-RAY DIFFRACTION | 0.268 | 0.228 | true | true | unknown | unknown | unknown | null | null | null | null | null |
7d4g | N | G | 0 | B | protein | null | spike glycoprotein s1 | VIRAL PROTEIN | 09/23/20 | A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Cao, L., Wang, X. | 3.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
3dus | D | C | 0 | C | carbohydrate | KDO | 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID | IMMUNE SYSTEM | 07/17/08 | Crystal structure of SAG506-01, orthorhombic, twinned, crystal 1 | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V. | 1.95 | X-RAY DIFFRACTION | 0.282 | 0.253 | false | true | IGHV7 | IGKV8 | Kappa | null | null | null | null | null |
7qcq | A | null | 0 | B | peptide | null | unknown | IMMUNE SYSTEM | 11/25/21 | VHH Z70 in interaction with PHF6 Tau peptide | LAMA GLAMA | null | null | null | Danis, C., Dupre, E., Zejneli, O., Caillierez, R., Arrial, A., Begard, S., Loyens, A., Mortelecque, J., Cantrelle, F.-X., Hanoulle, X., Rain, J.-C., Colin, M., Buee, L., Landrieu, I. | 1.7 | X-RAY DIFFRACTION | 0.214 | 0.195 | false | false | IGHV3 | null | null | null | null | null | null | null |
6hhd | D | null | 0 | C | protein | null | major prion protein | PROTEIN BINDING | 08/28/18 | Mouse Prion Protein in complex with Nanobody 484 | MUS MUSCULUS; CAMELUS DROMEDARIUS | camelus dromedarius | null | mus musculus | Soror, S., Abskharon, R., Wohlkonig, A. | 2.102 | X-RAY DIFFRACTION | 0.245 | 0.206 | false | true | IGHV1 | null | null | null | null | null | null | null |
7ora | A | B | 0 | R | protein | null | spike protein s1 | VIRAL PROTEIN | 06/04/21 | Crystal structure of the T478K mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-45 and COVOX-253 Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Ren, J., Stuart, D.I. | 2.6 | X-RAY DIFFRACTION | 0.245 | 0.204 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7s6k | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/Immune System | 09/14/21 | J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut2 S protein (conformation 2) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Ozorowski, G., Torres, J.L., Ward, A.B. | 3.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
3w2d | H | L | 0 | A | protein | null | enterotoxin type b | IMMUNE SYSTEM | 11/28/12 | Crystal Structure of Staphylococcal Eenterotoxin B in complex with a novel neutralization monoclonal antibody Fab fragment | STAPHYLOCOCCUS AUREUS; MUS MUSCULUS | mus musculus | mus musculus | staphylococcus aureus | Liang, S.Y., Hu, S., Dai, J.X., Guo, Y.J., Lou, Z.Y. | 3.1 | X-RAY DIFFRACTION | 0.261 | 0.196 | false | true | IGHV3 | IGKV4 | Kappa | 0 | -12.602268 | SPR | null | TBD |
7deu | B | b | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN/ANTIVIRAL PROTEIN | 11/05/20 | Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; MUS MUSCULUS | mus musculus | null | severe acute respiratory syndrome coronavirus2 | Zhang, Z., Zhang, G., Li, X., Rao, Z., Guo, Y. | 2.1 | X-RAY DIFFRACTION | 0.229 | 0.209 | true | true | unknown | unknown | unknown | null | null | null | null | null |
7o31 | H | L | 0 | P | peptide | null | pas#1 epitope peptide | IMMUNE SYSTEM | 04/01/21 | Crystal structure of the anti-PAS Fab 1.2 in complex with its epitope peptide and the anti-Kappa VHH domain | MUS MUSCULUS; LAMA GLAMA; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | synthetic construct | Schilz, J., Schiefner, A., Skerra, A. | 1.55 | X-RAY DIFFRACTION | 0.232 | 0.194 | false | true | IGHV5 | IGKV3 | Kappa | null | null | null | null | null |
3ri5 | H | L | 0 | A | protein | null | avermectin-sensitive glutamate-gated chloride channel gluclalpha | transport protein/immune system | 04/12/11 | C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab, ivermectin and picrotoxin | CAENORHABDITIS ELEGANS; MUS MUSCULUS | mus musculus | mus musculus | caenorhabditis elegans | Hibbs, R.E., Gouaux, E. | 3.4 | X-RAY DIFFRACTION | 0.248 | 0.232 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
1g9e | A | null | 11 | null | null | null | null | IMMUNE SYSTEM | 11/23/00 | SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA | LAMA GLAMA | lama glama | null | null | Renisio, J.-G., Perez, J., Czisch, M., Guenneugues, M., Bornet, O., Frenken, L., Cambillau, C., Darbon, H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6u0n | H | L | 0 | A | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 08/14/19 | Asymmetrically open conformational state (Class II) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Yang, Z., Bjorkman, P.J. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
4z0b | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 03/26/15 | Crystal Structure of the Fab Fragment of Anti-ofloxacin Antibody and Exploration Its Receptor Binding Site | MUS MUSCULUS | mus musculus | mus musculus | null | He, K., Du, X., Sheng, W., Zhou, X., Wang, J., Wang, S. | 3.2 | X-RAY DIFFRACTION | 0.309 | 0.276 | false | true | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
4kjw | C | D | 0 | A | protein | null | h(+)/cl(-) exchange transporter clca | TRANSPORT PROTEIN, membrane protein | 05/03/13 | Structure of the CLC-ec1 deltaNC construct in 100mM fluoride and 20mM bromide | ESCHERICHIA COLI; MUS MUSCULUS | mus musculus | mus musculus | escherichia coli | Lim, H.-H., Miller, C. | 3.03 | X-RAY DIFFRACTION | 0.269 | 0.230 | false | true | IGHV4 | IGKV4 | Kappa | null | null | null | null | null |
5dfz | E | null | 0 | C | protein | null | phosphatidylinositol 3-kinase vps34 | TRANSFERASE | 08/27/15 | Structure of Vps34 complex II from S. cerevisiae. | SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C); LAMA GLAMA | lama glama | null | saccharomyces cerevisiae (strain atcc 204508 /s288c) | Rostislavleva, K., Soler, N., Ohashi, Y., Zhang, L., Williams, R.L. | 4.4 | X-RAY DIFFRACTION | 0.376 | 0.368 | false | true | IGHV1 | null | null | null | null | null | null | null |
6svl | G | I | 0 | J | protein | null | myeloid-derived growth factor | CYTOKINE | 09/18/19 | human Myeloid-derived growth factor (MYDGF) in complex with neutralizing Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Ebenhoch, R., Nar, H. | 1.58 | X-RAY DIFFRACTION | 0.206 | 0.181 | false | true | IGHV14 | IGKV12 | Kappa | null | null | null | null | null |
4fqi | H | L | 0 | B | A | protein | protein | NA | NA | hemagglutinin ha2 | hemagglutinin ha1 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/25/12 | Crystal Structure of Fab CR9114 in Complex with a H5N1 influenza virus hemagglutinin | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Dreyfus, C., Wilson, I.A. | 1.71 | X-RAY DIFFRACTION | 0.232 | 0.198 | false | true | IGHV1 | IGLV1 | Lambda | 0 | -12.340621 | BLI | null | TBD |
4r4n | C | D | 0 | B | p | protein | peptide | NA | NA | m48u1 peptide | unknown | VIRAL PROTEIN/IMMUNE SYSTEM/INHIBITOR | 08/19/14 | Crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-1 93ug037 gp120 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | synthetic construct | Acharya, P., Louder, R., Kwong, P.D. | 3.56 | X-RAY DIFFRACTION | 0.328 | 0.296 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
7k7i | M | N | 0 | C | protein | null | putative pertussis-like toxin subunit | TOXIN | 09/22/20 | Density-fitted Model Structure of Antibody Variable Domains of TyTx4 in Complex with PltB pentamer of Typhoid Toxin | SALMONELLA TYPHI; MUS MUSCULUS | mus musculus | mus musculus | salmonella typhi | Nguyen, T., Feathers, J.R., Fromme, J.C., Song, J. | 3.13 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGKV5 | Kappa | null | null | null | null | null |
1q9l | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 08/25/03 | S25-2 Fab Unliganded 2 | MUS MUSCULUS | mus musculus | mus musculus | null | Nguyen, H.P., Seto, N.O., MacKenzie, C.R., Brade, L., Kosma, P., Brade, H., Evans, S.V. | 2.28 | X-RAY DIFFRACTION | 0.286 | 0.216 | false | false | IGHV7 | IGKV8 | Kappa | null | null | null | null | null |
1op9 | A | null | 0 | B | protein | null | lysozyme c | HYDROLASE | 03/05/03 | Complex of human lysozyme with camelid VHH HL6 antibody fragment | CAMELUS DROMEDARIUS; HOMO SAPIENS | camelus dromedarius | null | homo sapiens | Dumoulin, M., Last, A.M., Desmyter, A., Decanniere, K., Canet, D., Larsson, G., Spencer, A., Archer, D.B., Sasse, J., Muyldermans, S., Wyns, L., Redfield, C., Matagne, A., Robinson, C.V., Dobson, C.M. | 1.86 | X-RAY DIFFRACTION | 0.238 | 0.196 | false | true | IGHV1 | null | null | 0 | -12.48 | SPR | 25 | 12917687 |
7db6 | E | e | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | SIGNALING PROTEIN | 10/19/20 | human melatonin receptor MT1 - Gi1 complex | HOMO SAPIENS; RATTUS RATTUS; BOS TAURUS; MUS MUSCULUS | mus musculus | null | homo sapiens | rattus rattus | Okamoto, H.H., Kusakizako, T., Shihioya, W., Yamashita, K., Nishizawa, T., Nureki, O. | 3.3 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
5xhf | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 04/20/17 | Crystal structure of Trastuzumab Fab fragment bearing p-azido-L-phenylalanine | MUS MUSCULUS | mus musculus | mus musculus | null | Kuratani, M., Yanagisawa, T., Sakamoto, K., Yokoyama, S. | 3.205 | X-RAY DIFFRACTION | 0.297 | 0.219 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7whj | F | null | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 12/30/21 | The state 1 complex structure of Omicron spike with Bn03 (1-up RBD, 3 nanobodies) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | Zhan, W.Q., Zhang, X., Chen, Z.G., Sun, L. | 3.27 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6wps | F | G | 0 | E | protein | null | sars-cov-2 spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 05/27/20 | Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Pinto, D., Park, Y.J., Beltramello, M., Walls, A.C., Tortorici, M.A., Bianchi, S., Jaconi, S., Culap, K., Zatta, F., De Marco, A., Peter, A., Guarino, B., Spreafico, R., Cameroni, E., Case, J.B., Chen, R.E., Havenar-Daughton, C., Snell, G., Virgin, H.W., Lanzavecchia, A., Diamond, M.S., Fink, K., Veesler, D., Corti, D.... | 3.1 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7a0y | E | F | 0 | B | protein | null | na(+)/h(+) antiporter nhaa | MEMBRANE PROTEIN | 08/11/20 | Structure of dimeric sodium proton antiporter NhaA K300R variant, at pH 8.2, crystallized with chimeric Fab antibodies | SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. LT2; GALLUS GALLUS; HOMO SAPIENS | gallus gallus, homo sapiens | gallus gallus, homo sapiens | salmonella enterica subsp. enterica serovartyphimurium str. lt2 | Fippel, A., Mir, S.H., Lentes, C.J., Wirth, C., Hunte, C. | 2.45 | X-RAY DIFFRACTION | 0.241 | 0.203 | false | true | unknown | unknown | unknown | null | null | null | null | null |
6oq5 | D | null | 0 | A | protein | null | toxin b | TOXIN | 04/25/19 | Structure of the full-length Clostridium difficile toxin B in complex with 3 VHHs | CLOSTRIDIOIDES DIFFICILE; CAMELIDAE | camelidae | null | clostridioides difficile | Chen, P., Lam, K., Jin, R. | 3.87 | X-RAY DIFFRACTION | 0.315 | 0.263 | false | true | IGHV1 | null | null | null | null | null | null | null |
6o3u | F | E | 0 | H | Hapten | 44E | (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate | IMMUNE SYSTEM | 02/27/19 | Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3 in complex with 06:0 PA | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Irimia, A., Wilson, I.A. | 3.105 | X-RAY DIFFRACTION | 0.228 | 0.186 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7n0g | X | null | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 05/25/21 | CryoEm structure of SARS-CoV-2 spike protein (S-6P, 1-up) in complex with sybodies (Sb45) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; SYNTHETIC CONSTRUCT | synthetic construct | null | severe acute respiratory syndrome coronavirus2 | Jiang, J., Huang, R., Margulies, D. | 3.02 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6gs1 | H | null | 0 | A | protein | null | dipeptide and tripeptide permease a | MEMBRANE PROTEIN | 06/13/18 | Crystal structure of peptide transporter DtpA-nanobody in MES buffer | ESCHERICHIA COLI (STRAIN K12); LAMA GLAMA | lama glama | null | escherichia coli (strain k12) | Ural-Blimke, Y., Flayhan, A., Loew, C., Quistgaard, E.M. | 3.29 | X-RAY DIFFRACTION | 0.263 | 0.252 | false | true | IGHV1 | null | null | null | null | null | null | null |
6zwk | B | null | 0 | H | peptide | null | histone h2ax | IMMUNE SYSTEM | 07/28/20 | Crystal structure of the phosphorylated C-terminal tail of histone H2AX in complex with a specific nanobody (C6 gammaXbody) | VICUGNA PACOS; SYNTHETIC CONSTRUCT | vicugna pacos | null | homo sapiens | McEwen, A.G., Moeglin, E., Desplancq, D., Weiss, E., Poterszman, A. | 1.55 | X-RAY DIFFRACTION | 0.184 | 0.149 | false | true | IGHV1 | null | null | null | null | null | null | null |
6qd8 | Q | Y | 0 | B | A | protein | protein | NA | NA | envelope glycoprotein | envelope glycoprotein,virion spike glycoprotein,ebov-gp1 | VIRAL PROTEIN | 01/01/19 | EM structure of a EBOV-GP bound to 4M0368 neutralizing antibody | HOMO SAPIENS; EBOLA VIRUS | homo sapiens | homo sapiens | ebola virus | ebola virus | Diskin, R., Cohen-Dvashi, H. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
1kno | F | E | 0 | F | Hapten | PNP | METHYL-PHOSPHONIC ACID MONO-(4-NITRO-PHENYL) ESTER | CATALYTIC ANTIBODY | 09/11/95 | CRYSTAL STRUCTURE OF THE COMPLEX OF A CATALYTIC ANTIBODY FAB WITH A TRANSITION STATE ANALOG: STRUCTURAL SIMILARITIES IN ESTERASE-LIKE ABZYMES | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Charbonnier, J.-B., Gigant, B., Knossow, M. | 3.2 | X-RAY DIFFRACTION | 0.272 | 0.200 | false | false | IGHV5 | IGKV9 | Kappa | null | null | null | null | null |
5y2k | E | F | 0 | null | null | null | null | IMMUNE SYSTEM | 07/26/17 | A human antibody AF4H1L1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Xiao, H., Qi, J., Gao, F.G. | 2.1 | X-RAY DIFFRACTION | 0.259 | 0.220 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
6gdg | E | null | 0 | D | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short,guanine nucleotide-binding protein g(s) subunit alpha isoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 04/23/18 | Cryo-EM structure of the adenosine A2A receptor bound to a miniGs heterotrimer | ESCHERICHIA COLI; HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | homo sapiens | Garcia-Nafria, J., Lee, Y. | 4.11 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
3lrh | null | C | 0 | D | peptide | null | huntingtin | IMMUNE SYSTEM | 02/11/10 | Structure of anti-huntingtin VL domain in complex with huntingtin peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | null | homo sapiens | null | Schiefner, A., Chatwell, L., Skerra, A. | 2.6 | X-RAY DIFFRACTION | 0.278 | 0.216 | false | true | null | IGLV1 | Lambda | 0 | -10.022811 | Unknown | null | TBD |
6x5n | H | L | 0 | R | nucleic-acid | null | ggpan rna (39-mer) | Immune System/RNA | 05/26/20 | Crystal structure of a stabilized PAN ENE bimolecular triplex with a GC-clamped polyA tail | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | synthetic construct | Swain, M., Li, M., Woldawer, A., LeGrice, S.F.J. | 3.3 | X-RAY DIFFRACTION | 0.267 | 0.180 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7mep | N | K | 0 | D | B | protein | protein | NA | NA | bg505 sosipv5.2(7s) - gp120 | bg505 sosipv5.2(7s) - gp120 | VIRAL PROTEIN | 04/07/21 | BG505 SOSIP.v5.2(7S) in complex with the monoclonal antibodies Rh.33172 mAb.1 and RM19R | MACACA MULATTA; HUMAN IMMUNODEFICIENCY VIRUS | macaca mulatta | macaca mulatta | human immunodeficiency virus | human immunodeficiency virus | Antanasijevic, A., Ward, A.B. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGKV3 | Kappa | null | null | null | null | null |
4cdg | D | null | 0 | B | protein | null | bloom syndrome protein | null | 10/31/13 | Crystal structure of the Bloom's syndrome helicase BLM in complex with Nanobody | LAMA GLAMA; HOMO SAPIENS | lama glama | null | homo sapiens | Newman, J.A., Savitsky, P., Allerston, C.K., Pike, A.C.W., Pardon, E., Steyaert, J., Arrowsmith, C.H., Von Delft, F., Bountra, C., Edwards, A., Gileadi, O. | 2.794 | X-RAY DIFFRACTION | 0.2455 | 0.2056 | false | true | IGHV1 | null | null | null | null | null | null | null |
7q6z | B | null | 0 | A | protein | null | protein-cysteine n-palmitoyltransferase hhat | MEMBRANE PROTEIN | 11/09/21 | Structure of Hedgehog acyltransferase (HHAT) in complex with megabody 177 bound to IMP-1575 | HOMO SAPIENS; ESCHERICHIA COLI K-12 | escherichia coli k-12 | null | homo sapiens | Coupland, C., Carrique, L., Siebold, C. | 3.59 | ELECTRON MICROSCOPY | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
6cwg | B | null | 0 | A | protein | null | ricin | IMMUNE SYSTEM | 03/30/18 | Ricin catalytic subunit bound go A9 VHH antibody | RICINUS COMMUNIS; VICUGNA PACOS | vicugna pacos | null | ricinus communis | Rudolph, M.J., Mantis, N. | 2.6 | X-RAY DIFFRACTION | 0.262 | 0.223 | false | true | IGHV1 | null | null | null | null | null | null | null |
7pc2 | O | P | 0 | B | protein | null | gp120, bg505 sosip.664 t332n | VIRAL PROTEIN | 08/03/21 | HIV-1 Env (BG505 SOSIP.664) in complex with the IgA bNAb 7-269 and the antibody 3BNC117. | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS | homo sapiens | homo sapiens | human immunodeficiency virus | Fernandez, I., Bontems, F., Pehau-Arnaudet, G., Rey, F. | 2.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
4gxu | S | T | 0 | G | protein | null | hemagglutinin ha1 chain | VIRAL PROTEIN/IMMUNE SYSTEM | 09/04/12 | Crystal structure of antibody 1F1 bound to the 1918 influenza hemagglutinin | HOMO SAPIENS; INFLUENZA A VIRUS | homo sapiens | homo sapiens | influenza a virus | Ekiert, D.C., Wilson, I.A. | 3.294 | X-RAY DIFFRACTION | 0.255 | 0.219 | false | true | IGHV3 | IGLV1 | Lambda | 0 | null | SPR | null | 23236279 |
7ljb | E | D | 0 | A | protein | null | isoform 2 of potassium channel subfamily k member 4 | METAL TRANSPORT/Immune System | 01/28/21 | Human TRAAK K+ channel mutant G158D in a K+ bound conductive conformation | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Rietmeijer, R.A., Brohawn, S.G. | 2.97 | X-RAY DIFFRACTION | 0.240 | 0.196 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
6x78 | H | L | 0 | G | peptide | null | hiv fusion peptide 512-519 v2 | IMMUNE SYSTEM/VIRAL PROTEIN | 05/29/20 | Vaccine-elicited mouse FP-targeting neutralizing antibody vFP48.03 in complex with HIV fusion peptide (residue 512-519) | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | human immunodeficiency virus 1 | Xu, K., Kwong, P.D. | 2.359 | X-RAY DIFFRACTION | 0.226 | 0.178 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7rtb | N | null | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 08/12/21 | Peptide-19 bound to the Glucagon-Like Peptide-1 Receptor (GLP-1R) | HOMO SAPIENS; LAMA GLAMA; SYNTHETIC CONSTRUCT | lama glama | null | homo sapiens | homo sapiens | Johnson, R.M., Danev, R., Sexton, P.M., Wootten, D. | 2.14 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
4hkz | B | A | 0 | H | E | protein | protein | NA | NA | immunoglobulin g-binding protein a | protein l fragment | immune system | 10/15/12 | Trastuzumab Fab complexed with Protein L and Protein A fragments | HOMO SAPIENS; STAPHYLOCOCCUS AUREUS; FINEGOLDIA MAGNA | homo sapiens | homo sapiens | staphylococcus aureus | finegoldia magna | Avery, K.N., Zer, C., Bzymek, K.P., Williams, J.C. | 2.08 | X-RAY DIFFRACTION | 0.206 | 0.162 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4lvh | B | C | 0 | A | protein | null | hemagglutinin | IMMUNE SYSTEM | 07/26/13 | Insight into highly conserved H1 subtype-specific epitopes in influenza virus hemagglutinin | INFLUENZA A VIRUS; MUS MUSCULUS | mus musculus | mus musculus | influenza a virus | Kim, K.H., Cho, K.J., Kim, S., Seok, J.H., Lee, J.-H. | 2.8 | X-RAY DIFFRACTION | 0.274 | 0.232 | false | false | IGHV5 | IGKV3 | Kappa | null | null | null | null | null |
5i4f | A | a | 0 | a | Hapten | 6DM | 6-O-alpha-D-mannopyranosyl-alpha-D-mannopyranose | IMMUNE SYSTEM | 02/12/16 | scFv 2D10 complexed with alpha 1,6 mannobiose | MUS MUSCULUS | mus musculus | null | null | Vashisht, S., Kumar, A., Kaur, K.J., Salunke, D.M. | 1.549 | X-RAY DIFFRACTION | 0.193 | 0.167 | true | true | unknown | unknown | unknown | null | null | null | null | null |
2mmx | null | A | 4 | null | null | null | null | IMMUNE SYSTEM | 03/20/14 | NMR study of 6aJL2 | HOMO SAPIENS | null | homo sapiens | null | Amero, C., Maya-Martinez, R.C., Gil-Rodriguez, P.C. | NOT | SOLUTION NMR | null | null | false | true | null | IGLV6 | Lambda | null | null | null | null | null |
6wzt | H | L | 0 | A | protein | null | hemagglutinin | ANTIVIRAL PROTEIN | 05/14/20 | CryoEM structure of influenza hemagglutinin A/Victoria/361/2011 in complex with cyno antibody 3B10 | INFLUENZA A VIRUS; MACACA FASCICULARIS | macaca fascicularis | macaca fascicularis | influenza a virus | Qiu, Y., Zhou, Y., Darricarrere, N. | 4.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
5w6d | H | L | 0 | G | protein | null | bg505-sosip.v4.1-gt1-n137a gp120 | VIRAL PROTEIN/Immune System | 06/16/17 | Crystal structure of BG505-SOSIP.v4.1-GT1-N137A in complex with Fabs 35022 and 9H/109L | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Garces, F., Stanfield, R.L., Wilson, I.A. | 3.202 | X-RAY DIFFRACTION | 0.267 | 0.242 | false | true | IGHV4 | unknown | unknown | null | null | null | null | null |
6xlz | H | L | 0 | P | A | peptide | peptide | NA | NA | envelope glycoprotein gp160 | envelope glycoprotein gp160 | IMMUNE SYSTEM | 06/29/20 | Structure of NHP D11A.F2 Fab in complex with 16055 V2b peptide | HUMAN IMMUNODEFICIENCY VIRUS 1; MACACA MULATTA | macaca mulatta | macaca mulatta | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Aljedani, S., Rodarte, J., Liban, T., Pancera, M. | 2.8 | X-RAY DIFFRACTION | 0.255 | 0.216 | false | true | IGHV4 | IGLV6 | Lambda | null | null | null | null | null |
6eyn | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 11/13/17 | Structure of the 8D6 (anti-IgE) Fab | HOMO SAPIENS | homo sapiens | homo sapiens | null | Chen, J.B., Ramadani, F., Pang, M.O.Y., Beavil, R.L., Holdom, M.D., Mitropoulou, A.N., Beavil, A.J., Gould, H.J., Chang, T.W., Sutton, B.J., McDonnell, J.M., Davies, A.M. | 2.4 | X-RAY DIFFRACTION | 0.212 | 0.181 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
2kh2 | B | b | 22 | A | protein | null | interleukin-1 beta | Cytokine/IMMUNE SYSTEM | 03/23/09 | Solution structure of a scFv-IL-1B complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Wilkinson, I.C., Hall, C.J., Veverka, V., Muskett, F.W., Stephens, P.E., Taylor, R.J., Henry, A.J., Carr, M.D. | NOT | SOLUTION NMR | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
7bep | D | F | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 12/24/20 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in a ternary complex with COVOX-384 and S309 Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Zhao, Y., Ren, J., Stuart, D. | 2.61 | X-RAY DIFFRACTION | 0.241 | 0.203 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6y54 | O | P | 0 | P | unknown | OA8 | unknown | IMMUNE SYSTEM | 02/24/20 | Crystal structure of a Neisseria meningitidis serogroup A capsular oligosaccharide bound to a functional Fab | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Dello Iacono, L., Henriques, P., Adamo, R. | 2.67 | X-RAY DIFFRACTION | 0.267 | 0.210 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
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