pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7t3d | K | N | 0 | F | protein | null | hemagglutinin ha1 chain | Viral Protein/IMMUNE SYSTEM | 12/07/21 | CryoEM map of anchor 222-1C06 Fab and lateral patch 2B05 Fab binding H1 HA | INFLUENZA A VIRUS (A/CALIFORNIA/04/2009(H1N1)); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (a/california/04/2009(h1n1)) | Han, J., Ward, A.B. | 3.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2wuc | H | L | 0 | A | protein | null | hepatocyte growth factor activator long chain | HYDROLASE/HYDROLASE INHIBITOR | 10/01/09 | Crystal structure of HGFA in complex with the allosteric non- inhibitory antibody Fab40.deltaTrp and Ac-KQLR-chloromethylketone | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Ganesan, R., Eigenbrot, C., Shia, S., , | 2.7 | X-RAY DIFFRACTION | 0.274 | 0.226 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -9.26 | SPR | 25 | 20004165 |
6gci | B | null | 0 | A | protein | null | mitochondrial adp/atp carrier | MEMBRANE PROTEIN | 04/17/18 | Structure of the bongkrekic acid-inhibited mitochondrial ADP/ATP carrier | THERMOTHELOMYCES THERMOPHILA (STRAIN ATCC 42464 / BCRC 31852 / DSM 1799); LAMA GLAMA | lama glama | null | thermothelomyces thermophila (strain atcc 42464/ bcrc 31852 / dsm 1799) | Ruprecht, J.J., King, M.S., Pardon, E., Aleksandrova, A.A., Zogg, T., Crichton, P.G., Steyaert, J., Kunji, E.R.S. | 3.3 | X-RAY DIFFRACTION | 0.283 | 0.252 | false | true | IGHV1 | null | null | null | null | null | null | null |
4mxv | H | L | 0 | A | protein | null | lymphotoxin-alpha | CYTOKINE/IMMUNE SYSTEM | 09/26/13 | Structure of Lymphotoxin alpha bound to anti-LTa Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Yin, J.P., Hymowitz, S.G. | 3.2 | X-RAY DIFFRACTION | 0.235 | 0.177 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2p8m | B | A | 0 | C | peptide | null | gp41 peptide | viral protein | 03/22/07 | Crystal structure of the HIV-1 Cross Neutralizing Monoclonal Antibody 2F5 in complex with gp41 Peptide ELLELDKWASLWN in new crystal form | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | null | Julien, J.P., Bryson, S., Pai, E.F. | 2.7 | X-RAY DIFFRACTION | 0.238 | 0.223 | false | false | IGHV2 | IGKV1 | Kappa | null | null | null | null | null |
7e5r | I | K | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 02/20/21 | SARS-CoV-2 S trimer with three-antibody cocktail complex | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Sun, Y., Wang, L., Wang, N., Feng, R., Wang, X. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2aeq | H | L | 0 | A | protein | null | neuraminidase | HYDROLASE/IMMUNE SYSTEM | 07/23/05 | An epidemiologically significant epitope of a 1998 influenza virus neuraminidase forms a highly hydrated interface in the NA-antibody complex. | INFLUENZA A VIRUS; MUS MUSCULUS | mus musculus | mus musculus | influenza a virus | Venkatramani, L., Bochkarev, A., Air, G.M. | 3.0 | X-RAY DIFFRACTION | 0.312 | 0.267 | false | false | IGHV7 | IGKV6 | Kappa | 0 | -10.8 | Other | null | 16384583 |
3fo1 | B | A | 0 | B | Hapten | BZH | 5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)AMINO]-5-OXOPENTANOIC ACID | IMMUNE SYSTEM | 12/27/08 | Crystal structure of hapten complex of catalytic elimination antibody 13G5 (Glu(L39)Ala mutant) | MUS MUSCULUS, HOMO SAPIENS | mus musculus, homo sapiens | mus musculus, homo sapiens | mus musculus, homo sapiens | Debler, E.W., Wilson, I.A. | 2.2 | X-RAY DIFFRACTION | 0.281 | 0.225 | false | true | IGHV2 | IGKV1 | Kappa | null | null | null | null | null |
6bzv | E | F | 0 | K | peptide | null | e2 as412 peptide | IMMUNE SYSTEM | 12/26/17 | Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the GL precursor of the broadly neutralizing antibody 19B3 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | hepatitis c virus | Tzarum, N., Alemn, F., Wilson, I.A., Law, M. | 2.654 | X-RAY DIFFRACTION | 0.241 | 0.199 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
6mam | C | D | 0 | L | K | protein | protein | NA | NA | envelope glycoprotein | envelope glycoprotein | Viral protein/immune system | 08/28/18 | Cleaved Ebola GP in complex with a broadly neutralizing human antibody, ADI-15946 | HOMO SAPIENS; ZAIRE EBOLAVIRUS (STRAIN MAYINGA-76) | homo sapiens | homo sapiens | zaire ebolavirus (strain mayinga-76) | zaire ebolavirus (strain mayinga-76) | West, B.R., Moyer, C.L., Fusco, M.L., Saphire, E.O. | 4.1 | X-RAY DIFFRACTION | 0.281 | 0.262 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7cwo | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 08/29/20 | SARS-CoV-2 spike protein RBD and P17 fab complex | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Wang, X., Wang, N. | 3.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6pz8 | H | L | 0 | B | protein | null | s protein | VIRAL PROTEIN/IMMUNE SYSTEM | 07/31/19 | MERS S0 trimer in complex with variable domain of antibody G2 | MIDDLE EAST RESPIRATORY SYNDROME-RELATED CORONAVIRUS; MUS MUSCULUS | mus musculus | mus musculus | middle east respiratory syndrome-relatedcoronavirus | Bowman, C.A., Pallesen, J., Ward, A.B. | 4.19 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
3iu3 | C | D | 0 | J | protein | null | interleukin-2 receptor alpha chain | IMMUNE SYSTEM | 08/29/09 | Crystal structure of the Fab fragment of therapeutic antibody Basiliximab in complex with IL-2Ra (CD25) ectodomain | HOMO SAPIENS; SYNTHETIC CONSTRUCT | null | null | homo sapiens | Du, J., Yang, H., Wang, J., Ding, J. | 2.9 | X-RAY DIFFRACTION | 0.262 | 0.215 | false | true | IGHV1 | IGKV4 | Kappa | 0 | -13.44 | SPR | 25 | 20032294 |
4dka | B | null | 0 | null | null | null | null | RNA BINDING PROTEIN/IMMUNE SYSTEM | 02/03/12 | Structure of Editosome protein | LAMA GLAMA; TRYPANOSOMA BRUCEI | lama | null | null | Park, Y.-J., Hol, W. | 1.97 | X-RAY DIFFRACTION | 0.229 | 0.187 | false | true | IGHV1 | null | null | null | null | null | null | null |
6o9h | H | L | 0 | D | protein | null | ecd | IMMUNE SYSTEM | 03/13/19 | Mouse ECD with Fab1 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Min, X., Wang, Z. | 2.1 | X-RAY DIFFRACTION | 0.248 | 0.203 | false | true | IGHV5 | IGKV8 | Kappa | null | null | null | null | null |
6xsn | H | L | 0 | C | peptide | null | 16055_v1v2-1fd6 | IMMUNE SYSTEM | 07/15/20 | Crystal structure of NHP VD20.5A4 Fab in complex with 16055 V1V2 1FD6 scaffold | MACACA MULATTA | macaca mulatta | macaca mulatta | macaca mulatta | Aljedani, S., Pancera, M. | 2.87 | X-RAY DIFFRACTION | 0.267 | 0.221 | false | false | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
5gs1 | F | f | 0 | null | null | null | null | IMMUNE SYSTEM | 08/13/16 | Crystal structure of homo-specific diabody | HOMO SAPIENS | homo sapiens | null | null | Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O. | 2.0 | X-RAY DIFFRACTION | 0.286 | 0.267 | true | true | unknown | unknown | unknown | null | null | null | null | null |
5icy | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 02/23/16 | Cetuximab Fab in complex with linear meditope | MUS MUSCULUS, HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Bzymek, K.P., Williams, J.C. | 2.5 | X-RAY DIFFRACTION | 0.206 | 0.160 | false | true | IGHV2 | IGKV5 | Kappa | 0.000009 | -6.903731 | Unknown | null | TBD |
5dhv | A | B | 0 | N | protein | null | protein rev | IMMUNE SYSTEM | 08/31/15 | HIV-1 Rev NTD dimers with variable crossing angles | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | DiMattia, M.A., Watts, N.R., Wingfield, P.T., Grimes, J.M., Stuart, D.I., Steven, A.C. | 2.3 | X-RAY DIFFRACTION | 0.227 | 0.188 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7oap | F | null | 0 | E | protein | null | unknown | ANTIVIRAL PROTEIN | 04/19/21 | Nanobody H3 AND C1 bound to RBD | LAMA GLAMA; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | null | null | null | Naismith, J.H., Mikolajek, H. | 1.901 | X-RAY DIFFRACTION | 0.204 | 0.180 | false | false | IGHV1 | null | null | null | null | null | null | null |
1moe | A | a | 0 | null | null | null | null | IMMUNE SYSTEM | 09/09/02 | The three-dimensional structure of an engineered scFv T84.66 dimer or diabody in VL to VH linkage. | MUS MUSCULUS | mus musculus | null | null | Carmichael, J.A., Power, B.E., Garrett, T.P.J., Yazaki, P.J., Shively, J.E., Raubischek, A.A., Wu, A.M., Hudson, P.J. | 2.6 | X-RAY DIFFRACTION | 0.300 | 0.213 | true | true | unknown | unknown | unknown | null | null | null | null | null |
1sjv | A | null | 0 | null | null | null | null | ANTIBIOTIC | 03/04/04 | Three-Dimensional Structure of a Llama VHH Domain Swapping | LAMA GLAMA | lama glama | null | null | Spinelli, S., Desmyter, A., Frenken, L., Verrips, T., Cambillau, C. | 1.94 | X-RAY DIFFRACTION | 0.225 | 0.206 | false | true | IGHV1 | null | null | null | null | null | null | null |
5th9 | J | N | 0 | C | protein | null | matrix metalloproteinase-9,matrix metalloproteinase-9 | hydrolase/hydrolase inhibitor | 09/29/16 | Structure determination of a potent, selective antibody inhibitor of human MMP9 (GS-5745 bound to MMP-9) | ORYCTOLAGUS CUNICULUS; HOMO SAPIENS | oryctolagus cuniculus | oryctolagus cuniculus | homo sapiens | Appleby, T.C., Greenstein, A.E., Kwon, H.J. | 2.999 | X-RAY DIFFRACTION | 0.257 | 0.218 | false | true | IGHV2 | IGKV6 | Kappa | null | null | null | null | null |
7rdw | Q | R | 0 | C | protein | null | glycoprotein 120 | IMMUNE SYSTEM | 07/12/21 | Crystal Structure of FH1 Fab bound to HXb2 HIV-1 gp120 core | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Weidle, C., Pancera, M. | 3.55 | X-RAY DIFFRACTION | 0.295 | 0.260 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6mb3 | J | S | 0 | E | protein | null | plasmodium falciparum recombinant shortened csp | IMMUNE SYSTEM | 08/29/18 | Cryo-EM structure of the circumsporozoite protein of Plasmodium falciparum with a vaccine-elicited antibody reveals maturation of inter-antibody contacts | PLASMODIUM FALCIPARUM; HOMO SAPIENS | homo sapiens | homo sapiens | plasmodium falciparum | Cottrell, C.A., Torres, J.L., Ward, A.B. | 3.37 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
7q9p | J | K | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 11/12/21 | Beta-06 fab in complex with SARS-CoV-2 beta-Spike glycoprotein | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Duyvesteyn, H.M.E., Ren, J., Stuart, D.I. | 4.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGKV3 | Kappa | null | null | null | null | null |
4xbg | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 12/16/14 | Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA): 2.73 A resolution | HOMO SAPIENS | homo sapiens | homo sapiens | null | Irimia, A., Stanfield, R.L., Wilson, I.A. | 2.73 | X-RAY DIFFRACTION | 0.246 | 0.202 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
3j70 | A | B | 0 | D | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 04/22/14 | Model of gp120, including variable regions, in complex with CD4 and 17b | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Rasheed, M., Bettadapura, R., Bajaj, C. | NOT | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6ad8 | E | F | 0 | B | protein | null | h(+)/cl(-) exchange transporter clca | TRANSPORT PROTEIN | 07/31/18 | Crystal structure of the E148D mutant CLC-ec1 in 50 mM bromide | ESCHERICHIA COLI (STRAIN K12); MUS MUSCULUS | mus musculus | mus musculus | escherichia coli (strain k12) | Lim, H.-H., Park, K. | 3.3 | X-RAY DIFFRACTION | 0.284 | 0.227 | false | false | IGHV4 | IGKV4 | Kappa | null | null | null | null | null |
7zmv | F | null | 0 | B | protein | null | atp-dependent dna helicase q5 | HYDROLASE | 04/19/22 | Crystal structure of human RECQL5 helicase APO form in complex with engineered nanobody (Gluebody) G5-006 | Homo sapiens; Lama glama | lama glama | null | homo sapiens | Ye, M., Makola, M., Newman, J.A., Fairhead, M., MacLean, E., Krojer, T., Aitkenhead, H., Bountra, C., Gileadi, O., von Delft, F. | 2.002 | X-RAY DIFFRACTION | 0.275 | 0.242 | false | true | IGHV1 | null | null | null | null | null | null | null |
6x1s | H | L | 0 | I | peptide | null | nm23-1-ptza peptide | IMMUNE SYSTEM | 05/19/20 | Structure of pHis Fab (SC1-1) in complex with pHis mimetic peptide | ORYCTOLAGUS CUNICULUS; SYNTHETIC CONSTRUCT | oryctolagus cuniculus | oryctolagus cuniculus | synthetic construct | Kalagiri, R., Stanfield, R.L., Wilson, I.A., Hunter, T. | 1.65 | X-RAY DIFFRACTION | 0.226 | 0.200 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
3mlw | I | M | 0 | Q | peptide | null | hiv-1 gp120 third variable region (v3) crown | IMMUNE SYSTEM | 04/18/10 | Crystal structure of anti-HIV-1 V3 Fab 1006-15D in complex with an MN V3 peptide | HIV-1 M:B_MN; HOMO SAPIENS | homo sapiens | homo sapiens | hiv-1 m | Kong, X.-P. | 2.7 | X-RAY DIFFRACTION | 0.291 | 0.214 | false | false | IGHV5 | IGLV1 | Lambda | null | null | null | null | null |
6mzj | D | C | 0 | B | protein | null | 426c ds-sosip d3 | VIRAL PROTEIN/IMMUNE SYSTEM | 11/05/18 | Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 2 Fabs bound, sharpened map | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Borst, A.J., Weidle, C.E., Gray, M.D., Frenz, B., Snijder, J., Joyce, M.G., Georgiev, I.S., Stewart-Jones, G.B.E., Kwong, P.D., McGuire, A.T., DiMaio, F., Stamatatos, L., Pancera, M., Veesler, D. | 4.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
3gi9 | H | L | 0 | C | protein | null | uncharacterized protein mj0609 | TRANSPORT PROTEIN | 03/05/09 | Crystal Structure of ApcT Transporter Bound to 7F11 Monoclonal Fab Fragment | MUS MUSCULUS; METHANOCALDOCOCCUS JANNASCHII | mus musculus | mus musculus | methanocaldococcus jannaschii | Shaffer, P.L., Goehring, A.S., Shankaranarayanan, A., Gouaux, E., New York Consortium on Membrane Protein Structure (NYCOMPS) | 2.48 | X-RAY DIFFRACTION | 0.296 | 0.248 | false | true | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
5iq9 | H | L | 0 | P | peptide | null | gp41 mper peptide | IMMUNE SYSTEM | 03/10/16 | Crystal structure of 10E8v4 Fab in complex with an HIV-1 gp41 peptide. | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Ofek, G., Kwon, Y.D., Caruso, W., Kwong, P.D. | 2.4 | X-RAY DIFFRACTION | 0.236 | 0.191 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
7f46 | H | L | 0 | B | C | protein | protein | NA | NA | spike glycoprotein | spike glycoprotein | VIRAL PROTEIN | 06/17/21 | Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab (state1, local refinement of the RBD, NTD and 35B5 Fab) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | severe acute respiratory syndrome coronavirus2 | Wang, X.F., Zhu, Y.Q. | 4.79 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
2gcy | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 03/14/06 | humanized antibody C25 Fab fragment | MUS MUSCULUS | mus musculus | mus musculus | null | LaPorte, S.L., Finer-Moore, J., Marks, J.D., Forsyth, C.M. | 2.5 | X-RAY DIFFRACTION | 0.232 | 0.225 | false | true | IGHV5 | IGKV3 | Kappa | null | null | null | null | null |
7e6p | H | L | 0 | A | peptide | null | amyloid beta fragment with an intramolecular disulfide bondat positions 17 and 28 | IMMUNE SYSTEM | 02/23/21 | Fab-amyloid beta fragment complex | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Kita, A., Irie, K., Irie, Y., Miki, K. | 2.5 | X-RAY DIFFRACTION | 0.244 | 0.191 | false | false | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
4zg1 | A | null | 0 | null | null | null | null | PROTEIN BINDING | 04/22/15 | Crystal structure of a nanobody raised against KDM5b | LAMA GLAMA | lama glama | null | null | Wiuf, A., Kristensen, O., Gajhede, M. | 1.85 | X-RAY DIFFRACTION | 0.235 | 0.186 | false | true | IGHV1 | null | null | null | null | null | null | null |
6mi2 | A | B | 0 | C | protein | null | tumor necrosis factor receptor superfamily member 9 | IMMUNE SYSTEM | 09/19/18 | Structure of the human 4-1BB / Utomilumab Fab complex | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Kimberlin, C.R., Chin, S.M., Roe-Zurz, Z., Xu, A., Yang, Y. | 2.72 | X-RAY DIFFRACTION | 0.278 | 0.238 | false | true | IGHV5 | IGLV3 | Lambda | 0 | -9.769558 | SPR | null | TBD |
7jv5 | N | null | 0 | A | B | G | protein | protein | protein | NA | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2 | SIGNALING PROTEIN | 08/20/20 | Cryo-EM structure of SKF-81297-bound dopamine receptor 1 in complex with Gs protein | HOMO SAPIENS; SYNTHETIC CONSTRUCT | synthetic construct | null | homo sapiens | homo sapiens | homo sapiens | Zhuang, Y., Xu, P., Mao, C., Wang, L., Krumm, B., Zhou, X.E., Huang, S., Liu, H., Cheng, X., Huang, X.-P., Sheng, D.-D., Xu, T., Liu, Y.-F., Wang, Y., Guo, J., Jiang, Y., Jiang, H., Melcher, K., Roth, B.L., Zhang, Y., Zhang, C., Xu, H.E. | 3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
7qji | F | null | 0 | E | protein | null | divalent metal cation transporter | MEMBRANE PROTEIN | 12/16/21 | X-Ray Structure of apo-EleNRMT in complex with two Nanobodies at 4.1A | EGGERTHELLA LENTA | eggerthella lenta | null | eggerthella lenta | Ramanadane, K., Straub, M.S., Dutzler, R., Manatschal, C. | 4.1 | X-RAY DIFFRACTION | 0.316 | 0.267 | false | true | IGHV1 | null | null | null | null | null | null | null |
3eba | A | null | 0 | B | protein | null | lysozyme c | IMMUNE SYSTEM/HYDROLASE | 08/27/08 | CAbHul6 FGLW mutant (humanized) in complex with human lysozyme | CAMELUS DROMEDARIUS; HOMO SAPIENS | camelus dromedarius | null | homo sapiens | Loris, R., Vincke, C., Saerens, D., Martinez-Rodriguez, S., Muyldermans, S., Conrath, K. | 1.85 | X-RAY DIFFRACTION | 0.255 | 0.211 | false | true | IGHV1 | null | null | 0 | -11.76 | SPR | null | 19010777 |
5uoe | H | L | 0 | A | protein | null | insulin-degrading enzyme | Hydrolase/Immune System | 01/31/17 | Crystal Structure Analysis of Elbow-Engineered-Fab-Bound Human Insulin Degrading Enzyme (IDE) | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Liang, W.G., Bailey, L., Kossiakoff, T., Tang, W.J. | 3.8 | X-RAY DIFFRACTION | 0.270 | 0.220 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7vui | N | null | 0 | A | B | protein | protein | NA | NA | isoform gnas-2 of guanine nucleotide-binding protein g(s)subunit alpha isoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 11/02/21 | Cryo-EM structure of a class A orphan GPCR | HOMO SAPIENS; BACILLUS CIRCULANS | homo sapiens | null | homo sapiens | homo sapiens | Liu, Z.J., Hua, T., Zhou, Y.L., Wu, L.J. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
2qqk | H | L | 0 | A | protein | null | neuropilin-2 | SIGNALING PROTEIN | 07/26/07 | Neuropilin-2 a1a2b1b2 Domains in Complex with a Semaphorin-Blocking Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Appleton, B.A., Wiesmann, C. | 2.75 | X-RAY DIFFRACTION | 0.243 | 0.186 | false | true | IGHV3 | IGKV1D | Kappa | null | null | null | null | null |
4m1d | H | L | 0 | P | peptide | null | cyclic v3 arch peptide | IMMUNE SYSTEM | 08/02/13 | Crystal structure of anti-HIV-1 Fab 447-52D in complex with V3 cyclic peptide MN | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | null | Killikelly, A., Kong, X.P. | 1.8 | X-RAY DIFFRACTION | 0.216 | 0.186 | false | true | IGHV3 | IGLV1 | Lambda | 0 | -10.420468 | Unknown | null | TBD |
4xph | H | L | 0 | A | protein | null | transporter | protein transport/inhibitor | 01/17/15 | X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) bound to 3,4dichlorophenethylamine | MUS MUSCULUS; DROSOPHILA MELANOGASTER | mus musculus | mus musculus | drosophila melanogaster | Penmatsa, A., Wang, K., Gouaux, E. | 2.9 | X-RAY DIFFRACTION | 0.277 | 0.240 | false | true | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
7sob | C | B | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 10/29/21 | SARS-CoV-2 S B.1.617.1 kappa variant + S309 + S2L20 Global Refinement | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 2.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4r4n | T | U | 0 | S | protein | null | m48u1 peptide | VIRAL PROTEIN/IMMUNE SYSTEM/INHIBITOR | 08/19/14 | Crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-1 93ug037 gp120 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Louder, R., Kwong, P.D. | 3.56 | X-RAY DIFFRACTION | 0.328 | 0.296 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
7vsu | B | A | 0 | null | null | null | null | BIOSYNTHETIC PROTEIN | 10/27/21 | Crystal structure of Fab fragment of anti-mesothelin antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Yang, Z., Ying, T. | 3.1 | X-RAY DIFFRACTION | 0.249 | 0.215 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
3efd | H | L | 0 | K | peptide | null | kcsa | IMMUNE SYSTEM | 09/08/08 | The crystal structure of the cytoplasmic domain of KcsA | MUS MUSCULUS; ESCHERICHIA COLI | mus musculus | mus musculus | escherichia coli | Uysal, S., Vasquez, V., Tereshko, V., Esaki, K., Fellouse, F.A., Sidhu, S.S., Koide, S., Perozo, E., Kossiakoff, A. | 2.6 | X-RAY DIFFRACTION | 0.276 | 0.225 | false | false | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
3j8w | G | K | 0 | C | protein | null | l1 | VIRUS/IMMUNE SYSTEM | 11/19/14 | Cryo-EM reconstruction of quasi-HPV16 complex with H263.A2 Fab | MUS MUSCULUS; HUMAN PAPILLOMAVIRUS TYPE 16 | mus musculus | mus musculus | human papillomavirus type 16 | Guan, J., Hafenstein, S. | 13 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV12 | Kappa | null | null | null | null | null |
3rpi | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 04/26/11 | Crystal Structure of Fab from 3BNC60, Highly Potent anti-HIV Antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Diskin, R., Bjorkman, P.J. | 2.648 | X-RAY DIFFRACTION | 0.258 | 0.208 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7nc0 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 01/28/21 | The structure of the humanised A33 Fab C226S variant, an immunotherapy candidate for colorectal cancer | HOMO SAPIENS | homo sapiens | homo sapiens | null | Tang, J., Zhang, C., Dalby, P., Kozielski, F. | 2.2 | X-RAY DIFFRACTION | 0.257 | 0.215 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
3be1 | H | L | 0 | A | protein | null | receptor tyrosine-protein kinase erbb-2 | TRANSFERASE | 11/15/07 | Dual specific bH1 Fab in complex with the extracellular domain of HER2/ErbB-2 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Bostrom, J.M., Wiesmann, C., Appleton, B.A. | 2.9 | X-RAY DIFFRACTION | 0.277 | 0.236 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -10.34 | SPR | null | 19299620 |
4zpv | H | L | 0 | R | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 05/08/15 | Structure of MERS-Coronavirus Spike Receptor-binding Domain (England1 Strain) in Complex with Vaccine-Elicited Murine Neutralizing Antibody D12 (Crystal Form 2) | HUMAN CORONAVIRUS EMC (ISOLATE UNITED KINGDOM/H123990006/2012); MUS MUSCULUS | mus musculus | mus musculus | human coronavirus emc (isolate unitedkingdom/h123990006/2012) | Joyce, M.G., Mascola, J.R., Graham, B.S., Kwong, P.D. | 3.2 | X-RAY DIFFRACTION | 0.281 | 0.223 | false | false | IGHV5 | IGKV10 | Kappa | null | null | null | null | null |
6y97 | H | L | 0 | A | B | protein | protein | NA | NA | b-lymphocyte antigen cd20 | b-lymphocyte antigen cd20 | MEMBRANE PROTEIN | 03/06/20 | Structure of full-length CD20 in complex with Obinutuzumab Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | homo sapiens | Kumar, A., Reyes, N. | 4.33 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV2 | Kappa | null | null | null | null | null |
6xw6 | C | null | 0 | A | protein | null | capsid protein | VIRAL PROTEIN | 01/23/20 | Crystal structure of murine norovirus P domain in complex with Nanobody NB-5853 | MURINE NOROVIRUS 1; VICUGNA PACOS | vicugna pacos | null | murine norovirus 1 | Kilic, T., Sabin, C., Hansman, G. | 1.96 | X-RAY DIFFRACTION | 0.248 | 0.199 | false | true | IGHV1 | null | null | null | null | null | null | null |
4grw | I | null | 0 | D | protein | null | interleukin-12 subunit beta | IMMUNE SYSTEM | 08/27/12 | Structure of a complex of human IL-23 with 3 Nanobodies (Llama vHHs) | LLAMA GLAMA; HOMO SAPIENS; SYNTHETIC CONSTRUCT | lama glama | null | homo sapiens | Desmyter, A., Spinelli, S., Button, C., Saunders, M., de Haard, H., Rommelaere, H., Union, A., Cambillau, C. | 2.55 | X-RAY DIFFRACTION | 0.218 | 0.183 | false | true | IGHV1 | null | null | null | null | null | null | null |
7e9n | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN,IMMUNE SYSTEM | 03/04/21 | Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(1 down RBD, state1) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Wang, X.F., Zhu, Y.Q. | 3.69 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
6war | L | null | 0 | K | protein | null | spike protein | VIRAL PROTEIN/IMMUNE SYSTEM | 04/08/20 | Crystal structure of the MERS-CoV RBD bound by the neutralizing single-domain antibody MERS VHH-55 | MIDDLE EAST RESPIRATORY SYNDROME-RELATED CORONAVIRUS; LAMA GLAMA | lama glama | null | middle east respiratory syndrome-relatedcoronavirus | Wrapp, D., Torres, G.M., McLellan, J.S. | 3.4 | X-RAY DIFFRACTION | 0.268 | 0.214 | false | true | IGHV1 | null | null | null | null | null | null | null |
4grw | J | null | 0 | A | protein | null | interleukin-23 subunit alpha | IMMUNE SYSTEM | 08/27/12 | Structure of a complex of human IL-23 with 3 Nanobodies (Llama vHHs) | LLAMA GLAMA; HOMO SAPIENS; SYNTHETIC CONSTRUCT | lama glama | null | homo sapiens | Desmyter, A., Spinelli, S., Button, C., Saunders, M., de Haard, H., Rommelaere, H., Union, A., Cambillau, C. | 2.55 | X-RAY DIFFRACTION | 0.218 | 0.183 | false | true | IGHV1 | null | null | null | null | null | null | null |
5dmg | C | D | 0 | Z | peptide | null | microtubule-associated protein | IMMUNE SYSTEM | 09/08/15 | X-RAY STRUCTURE OF THE FAB FRAGMENT OF THE ANTI TAU ANTIBODY RB86 IN COMPLEX WITH THE PHOSPHORYLATED TAU PEPTIDE (416-430) | ORYCTOLAGUS CUNICULUS; SYNTHETIC CONSTRUCT | oryctolagus cuniculus | oryctolagus cuniculus | homo sapiens | Benz, J., Lorenz, S., Georges, G., Jochner, A., Goepfert, U., Grueninger, F., Bujotzek, A. | 2.5 | X-RAY DIFFRACTION | 0.263 | 0.210 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6e5p | R | Q | 0 | R | carbohydrate | NAG | polysaccharide | VIRAL PROTEIN | 07/21/18 | Backbone model based on cryo-EM map at 8.5 A of domain-swapped, glycan-reactive, neutralizing antibody 2G12 bound to HIV-1 Env BG505 DS-SOSIP, which was also bound to CD4-binding site antibody VRC03 | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | homo sapiens | Acharya, P., Kwong, P.D. | 8.8 | ELECTRON MICROSCOPY | null | null | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
7lf7 | H | L | 0 | K | protein | null | apolipoprotein l1 | IMMUNE SYSTEM | 01/15/21 | Fab 6D12 bound to ApoL1 NTD | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Ultsch, M., Kirchhofer, D. | 2.026 | X-RAY DIFFRACTION | 0.217 | 0.189 | false | true | IGHV5 | IGKV16 | Kappa | null | null | null | null | null |
5vxm | B | null | 0 | A | protein | null | invasin ipad | IMMUNE SYSTEM | 05/23/17 | 2.05 A resolution structure of IpaD from Shigella flexneri in complex with single-domain antibody 20ipaD | SHIGELLA FLEXNERI; VICUGNA PACOS | vicugna pacos | null | shigella flexneri | Barta, M.L., Lovell, S., Battaile, K.P., Picking, W.D., Picking, W.L. | 2.05 | X-RAY DIFFRACTION | 0.246 | 0.210 | false | true | IGHV1 | null | null | null | null | null | null | null |
6vy4 | H | L | 0 | A | protein | null | receptor binding protein | VIRAL PROTEIN/IMMUNE SYSTEM | 02/25/20 | Crystal structure of Hendra receptor binding protein head domain in complex with human neutralizing antibody HENV-32 | HENDRA HENIPAVIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | hendra henipavirus | Dong, J., Crowe, J.E. | 2.0 | X-RAY DIFFRACTION | 0.226 | 0.183 | false | true | IGHV1 | IGLV3 | Lambda | null | null | null | null | null |
1r3i | H | L | 0 | C | protein | null | voltage-gated potassium channel | MEMBRANE PROTEIN | 10/02/03 | potassium channel KcsA-Fab complex in Rb+ | STREPTOMYCES LIVIDANS; MUS MUSCULUS | mus musculus | mus musculus | streptomyces lividans | Zhou, Y., MacKinnon, R. | 2.4 | X-RAY DIFFRACTION | 0.236 | 0.217 | false | false | IGHV1 | IGKV5 | Kappa | null | null | null | null | null |
7wd7 | a | b | 0 | A | protein | null | heavy chain of s5d2 fab | VIRAL PROTEIN | 12/21/21 | SARS-CoV-2 Beta spike in complex with three S5D2 Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; MUS MUSCULUS | mus musculus | mus musculus | severe acute respiratory syndrome coronavirus2 | Wang, Y.F., Cong, Y. | 3.5 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
5vm6 | A | null | 0 | A | Hapten | 9EG | N-(4-chlorophenyl)-N'-(3,4-dichlorophenyl)urea | UNKNOWN FUNCTION | 04/26/17 | The hapten triclocarban bound to the single domain camelid nanobody VHH T10 | LAMA GLAMA | lama glama | null | lama glama | Tabares-da Rosa, S., Gonzalez-Sapienza, G., Wilson, D.K. | 1.5 | X-RAY DIFFRACTION | 0.193 | 0.172 | false | true | unknown | unknown | unknown | null | null | null | null | null |
5esz | H | L | 0 | G | protein | null | 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase,envelope glycoprotein gp160 | IMMUNE SYSTEM | 11/17/15 | Crystal Structure of Broadly Neutralizing Antibody CH04, Isolated from Donor CH0219, in Complex with Scaffolded Trimeric HIV-1 Env V1V2 Domain from the Clade AE Strain A244 | HOMO SAPIENS; HAEMOPHILUS INFLUENZAE | homo sapiens | homo sapiens | haemophilus influenzae, human immunodeficiencyvirus 1, haemophilus influenzae (strain atcc 51907 / dsm 11121 / kw20 / rd) | Gorman, J., Yang, M., Kwong, P.D. | 4.191 | X-RAY DIFFRACTION | 0.282 | 0.252 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
3ria | G | K | 0 | C | protein | null | avermectin-sensitive glutamate-gated chloride channel gluclalpha | TRANSPORT PROTEIN/IMMUNE SYSTEM | 04/13/11 | C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab, ivermectin and iodide. | CAENORHABDITIS ELEGANS; MUS MUSCULUS | mus musculus | mus musculus | caenorhabditis elegans | Hibbs, R.E., Gouaux, E. | 3.8 | X-RAY DIFFRACTION | 0.280 | 0.266 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
7p5y | G | null | 0 | A | protein | null | volume-regulated anion channel subunit lrrc8a | MEMBRANE PROTEIN | 07/15/21 | Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb3 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | synthetic construct | null | mus musculus | Deneka, D., Rutz, S., Sawicka, M. | 3.29 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7lyw | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 03/08/21 | Crystal structure of the HCMV pentamer-specific antibody 2-25 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Wrapp, D., Mishra, A.K., McLellan, J.S. | 2.51 | X-RAY DIFFRACTION | 0.219 | 0.187 | false | true | IGHV1 | IGLV3 | Lambda | null | null | null | null | null |
1wtl | null | A | 0 | null | null | null | null | IMMUNOGLOBULIN | 06/08/94 | COMPARISON OF CRYSTAL STRUCTURES OF TWO HOMOLOGOUS PROTEINS: STRUCTURAL ORIGIN OF ALTERED DOMAIN INTERACTIONS IN IMMUNOGLOBULIN LIGHT CHAIN DIMERS | HOMO SAPIENS | null | homo sapiens | null | Huang, D.B., Chang, C.H., Schiffer, M. | 1.9 | X-RAY DIFFRACTION | unknown | unknown | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
5jds | B | null | 0 | A | protein | null | programmed cell death 1 ligand 1 | IMMUNE SYSTEM | 04/17/16 | Crystal structure of PD-L1 complexed with a nanobody at 1.7 Angstron resolution | CAMELIDAE; HOMO SAPIENS | camelidae | null | homo sapiens | Zhou, A., Wei, H. | 1.7 | X-RAY DIFFRACTION | 0.204 | 0.178 | false | true | IGHV1 | null | null | 0 | -11.627287 | SPR | null | TBD |
2mmx | null | A | 16 | null | null | null | null | IMMUNE SYSTEM | 03/20/14 | NMR study of 6aJL2 | HOMO SAPIENS | null | homo sapiens | null | Amero, C., Maya-Martinez, R.C., Gil-Rodriguez, P.C. | NOT | SOLUTION NMR | null | null | false | true | null | IGLV6 | Lambda | null | null | null | null | null |
7k7i | H | L | 0 | A | protein | null | putative pertussis-like toxin subunit | TOXIN | 09/22/20 | Density-fitted Model Structure of Antibody Variable Domains of TyTx4 in Complex with PltB pentamer of Typhoid Toxin | SALMONELLA TYPHI; MUS MUSCULUS | mus musculus | mus musculus | salmonella typhi | Nguyen, T., Feathers, J.R., Fromme, J.C., Song, J. | 3.13 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGKV5 | Kappa | null | null | null | null | null |
1wcb | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 11/12/04 | PLP-DEPENDENT CATALYTIC ANTIBODY 15A9 IN COMPLEX WITH ITS HAPTEN | MUS MUSCULUS | mus musculus | mus musculus | null | Pimpaneau, Beatrice Golinelli-, Christen, P. | 2.5 | X-RAY DIFFRACTION | 0.2899 | 0.2230 | false | true | IGHV7 | IGKV4 | Kappa | null | null | null | null | null |
2qr0 | N | M | 0 | O | protein | null | vascular endothelial growth factor a | IMMUNE SYSTEM | 07/27/07 | Structure of VEGF complexed to a Fab containing TYR and SER in the CDRs | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Wiesmann, C. | 3.5 | X-RAY DIFFRACTION | 0.312 | 0.291 | false | false | IGHV3 | IGKV1 | Kappa | 0 | -11.5 | SPR | 37 | 17825836 |
3s96 | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 05/31/11 | Crystal structure of 3B5H10 | MUS MUSCULUS | mus musculus | mus musculus | null | Weisgraber, K., Peters-Libeu, C., Rutenber, E., Newhouse, Y., Finkbeiner, S. | 1.9 | X-RAY DIFFRACTION | 0.260 | 0.183 | false | false | IGHV9 | IGLV3 | Lambda | null | null | null | null | null |
1mfb | H | L | 0 | H | carbohydrate | GLA | polysaccharide | IMMUNOGLOBULIN | 10/25/93 | HIGH RESOLUTION STRUCTURES OF ANTIBODY FAB FRAGMENT COMPLEXED WITH CELL-SURFACE OLIGOSACCHARIDE OF PATHOGENIC SALMONELLA | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Zdanov, A., Cygler, M. | 2.1 | X-RAY DIFFRACTION | unknown | 0.160 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
7mfg | E | F | 0 | D | C | protein | protein | NA | NA | hemagglutinin ha2 chain | hemagglutinin ha1 chain | VIRAL PROTEIN/IMMUNE SYSTEM | 04/09/21 | Cryo-EM structure of the VRC310 clinical trial, vaccine-elicited, human antibody 310-030-1D06 Fab in complex with an H1 NC99 HA trimer | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Gorman, J., Kwong, P.D. | 3.87 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6pcu | I | H | 0 | G | protein | null | outer capsid protein vp4 | viral protein/immune system | 06/18/19 | VP8* of a G2P[4] human rotavirus in complex with scFv antibody 9 | ROTAVIRUS A; HOMO SAPIENS | homo sapiens | homo sapiens | rotavirus a | Hu, L., Venkataram Prasad, B.V. | 2.4 | X-RAY DIFFRACTION | 0.237 | 0.186 | false | true | IGHV4 | IGLV9 | Lambda | null | null | null | null | null |
6n81 | C | D | 0 | B | protein | null | major capsid protein | IMMUNE SYSTEM | 11/28/18 | Crystal structure of GII.4 2002 norovirus P domain in complex with cross-reactive human antibody A1227 | NOROVIRUS HU/GII.4/FARMINGTON HILLS/2004/USA; HOMO SAPIENS | homo sapiens | homo sapiens | norovirus hu/gii.4/farmington hills/2004/usa | Changela, A., Verardi, R., Kwong, P.D. | 2.579 | X-RAY DIFFRACTION | 0.211 | 0.173 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
1bww | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 09/29/98 | BENCE-JONES IMMUNOGLOBULIN REI VARIABLE PORTION, T39K MUTANT | HOMO SAPIENS | null | homo sapiens | null | Uson, I., Pohl, E., Schneider, T.R., Dauter, Z., Schmidt, A., Fritz, H.J., Sheldrick, G.M. | 1.7 | X-RAY DIFFRACTION | unknown | unknown | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
1hzh | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 01/24/01 | CRYSTAL STRUCTURE OF THE INTACT HUMAN IGG B12 WITH BROAD AND POTENT ACTIVITY AGAINST PRIMARY HIV-1 ISOLATES: A TEMPLATE FOR HIV VACCINE DESIGN | HOMO SAPIENS | homo sapiens | homo sapiens | null | Saphire, E.O., Burton, D.R., Wilson, I.A. | 2.7 | X-RAY DIFFRACTION | 0.273 | 0.229 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4zpv | A | B | 0 | S | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 05/08/15 | Structure of MERS-Coronavirus Spike Receptor-binding Domain (England1 Strain) in Complex with Vaccine-Elicited Murine Neutralizing Antibody D12 (Crystal Form 2) | HUMAN CORONAVIRUS EMC (ISOLATE UNITED KINGDOM/H123990006/2012); MUS MUSCULUS | mus musculus | mus musculus | human coronavirus emc (isolate unitedkingdom/h123990006/2012) | Joyce, M.G., Mascola, J.R., Graham, B.S., Kwong, P.D. | 3.2 | X-RAY DIFFRACTION | 0.281 | 0.223 | false | false | IGHV5 | IGKV10 | Kappa | null | null | null | null | null |
1f8t | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/05/00 | FAB (LNKB-2) OF MONOCLONAL ANTIBODY, CRYSTAL STRUCTURE | MUS MUSCULUS | mus musculus | mus musculus | null | Fokin, A.V., Afonin, P.V., Mikhailova, I.I., Tsygannik, I.N., Mareeva, T.I. | 2.2 | X-RAY DIFFRACTION | 0.221 | 0.171 | false | false | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7wec | G | J | 0 | B | protein | null | spike glycoprotein | IMMUNE SYSTEM/VIRAL PROTEIN | 12/23/21 | SARS-CoV-2 Omicron variant spike protein with three XGv347 Fabs binding to three closed state RBDs | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Wang, X., Wang, L. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4r7n | K | L | 0 | null | null | null | null | IMMUNE SYSTEM | 08/28/14 | Fab C2E3 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Loyau, J., Didelot, G., Malinge, P., Ravn, U., Magistrelli, G., Depoisier, J.F., Kosco-Vilbois, M., Fischer, N., Thore, S., Rousseau, F. | 3.45 | X-RAY DIFFRACTION | 0.280 | 0.236 | false | true | IGHV4 | IGKV6 | Kappa | null | null | null | null | null |
6iw2 | B | C | 0 | A | protein | null | envelope protein e | VIRAL PROTEIN/IMMUNE SYSTEM | 12/04/18 | Crystal structure of 5A ScFv in complex with YFV-17D sE in prefusion state | YELLOW FEVER VIRUS (STRAIN 17D VACCINE); HOMO SAPIENS | homo sapiens | homo sapiens | yellow fever virus (strain 17d vaccine) | Lu, X.S., Xiao, H.X., Li, S.H., Pang, X.F. | 2.9 | X-RAY DIFFRACTION | 0.272 | 0.238 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
2qtj | C | O | 3 | null | null | null | null | IMMUNE SYSTEM | 08/02/07 | Solution structure of human dimeric immunoglobulin A | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Furtado, P.B., Almogren, A., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7djy | A | null | 0 | null | null | null | null | BIOSYNTHETIC PROTEIN | 11/22/20 | Clec4f Nanobody 322 | LAMIUM MACULATUM | lamium maculatum | null | null | Wen, Y., Zheng, F. | 2.7 | X-RAY DIFFRACTION | 0.266 | 0.228 | false | true | IGHV1 | null | null | null | null | null | null | null |
3ntc | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/03/10 | Crystal structure of KD-247 Fab, an anti-V3 antibody that inhibits HIV-1 Entry | HOMO SAPIENS, MUS MUSCULUS | homo sapiens, mus musculus | homo sapiens, mus musculus | null | Sarafianos, S.G., Kirby, K.A. | 1.55 | X-RAY DIFFRACTION | 0.222 | 0.182 | false | true | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
6woz | H | I | 0 | G | protein | null | reticulocyte binding protein 2b | CELL INVASION | 04/26/20 | Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to human monoclonal antibody 251249 | PLASMODIUM VIVAX (STRAIN SALVADOR I); HOMO SAPIENS | homo sapiens | homo sapiens | plasmodium vivax (strain salvador i) | Chan, L.J., Dietrich, M.H., Tham, W.H. | 2.9 | X-RAY DIFFRACTION | 0.258 | 0.211 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
1ce1 | H | L | 0 | P | peptide | null | protein (peptide antigen) | IMMUNE SYSTEM | 03/12/99 | 1.9A STRUCTURE OF THE THERAPEUTIC ANTIBODY CAMPATH-1H FAB IN COMPLEX WITH A SYNTHETIC PEPTIDE ANTIGEN | HOMO SAPIENS; SYNTHETIC CONSTRUCT | null | null | null | James, L.C., Hale, G., Waldmann, H., Bloomer, A.C. | 1.9 | X-RAY DIFFRACTION | 0.270 | 0.220 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
4wht | X | Y | 0 | x | peptide | null | unknown | VIRAL PROTEIN | 09/23/14 | Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the broadly neutralizing antibody 3/11, P1 crystal form | HEPATITIS C VIRUS; RATTUS NORVEGICUS | rattus norvegicus | rattus norvegicus | hepatitis c virus | Krey, T., Rey, F.A. | 2.22 | X-RAY DIFFRACTION | 0.243 | 0.209 | false | true | IGHV5 | IGKV2 | Kappa | 0 | -11.053614 | Unknown | null | TBD |
3ze0 | E | F | 0 | C | protein | null | integrin alpha-iib | CELL ADHESION/IMMUNE SYSTEM/PEPTIDE | 12/03/12 | Integrin alphaIIB beta3 headpiece and RGD peptide complex | MUS MUSCULUS; HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Zhu, J.H., Zhu, J.Q., Springer, T.A. | 2.95 | X-RAY DIFFRACTION | 0.2427 | 0.1847 | false | true | IGHV14 | IGKV14 | Kappa | null | null | null | null | null |
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