pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5gs1 | P | O | 0 | null | null | null | null | IMMUNE SYSTEM | 08/13/16 | Crystal structure of homo-specific diabody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O. | 2.0 | X-RAY DIFFRACTION | 0.286 | 0.267 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7m3n | H | L | 0 | A | protein | null | capsid protein 2 | VIRUS/Immune System | 03/18/21 | Canine parvovirus and Fab14 asymmetric reconstruction | MUS MUSCULUS; CANINE PARVOVIRUS TYPE 2 | mus musculus | mus musculus | canine parvovirus type 2 | Goteschius, D.J., Hartmann, S.R., Hafenstein, S.L. | 2.4 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV6 | Kappa | null | null | null | null | null |
6dc9 | I | M | 0 | Q | peptide | null | microtubule-associated protein tau | IMMUNE SYSTEM | 05/04/18 | Fab/epitope complex of human chimeric monoclonal antibody h4E6 targeting a phosphorylated tau epitope. | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Chukwu, J.E., Kong, X.-P. | 2.999 | X-RAY DIFFRACTION | 0.260 | 0.202 | false | true | IGHV14 | IGKV15 | Kappa | null | null | null | null | null |
7ew5 | K | L | 0 | G | protein | null | heavy chain of 13h5 | VIRAL PROTEIN | 05/24/21 | immune complex of HPV6 L1 pentamer and neutralizing antibody 13H5 | HUMAN PAPILLOMAVIRUS TYPE 6; MUS MUSCULUS | mus musculus | mus musculus | human papillomavirus type 6 | Wang, Z.P., Wang, D.N., Gu, Y., Li, S.W. | 3.606 | X-RAY DIFFRACTION | 0.293 | 0.252 | false | false | IGHV14 | IGKV6 | Kappa | null | null | null | null | null |
7f6y | H | L | 0 | R | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/26/21 | Complex Structure of antibody BD-503 and RBD-E484K of COVID-19 | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Xu, H., Wang, B., Zhao, T.N., Su, X.D. | 3 | X-RAY DIFFRACTION | 0.253 | 0.198 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7mgw | B | C | 0 | A | protein | null | sodium-dependent serotonin transporter | MEMBRANE PROTEIN | 04/13/21 | 5-HT bound serotonin transporter reconstituted in lipid nanodisc in NaCl in occluded conformation | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Yang, D., Gouaux, E. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
5tok | D | null | 0 | B | protein | null | fusion glycoprotein f0, fibritin chimera | VIRAL PROTEIN/IMMUNE SYSTEM | 10/17/16 | Crystal structure of the RSV F glycoprotein in complex with the neutralizing single-domain antibody F-VHH-L66 | HUMAN RESPIRATORY SYNCYTIAL VIRUS; LAMA GLAMA | lama glama | null | human respiratory syncytial virus | Gilman, M.S.A., Kabeche, S.C., McLellan, J.S. | 3.8 | X-RAY DIFFRACTION | 0.286 | 0.248 | false | true | IGHV1 | null | null | null | null | null | null | null |
1kxt | D | null | 0 | C | protein | null | alpha-amylase, pancreatic | HYDROLASE, IMMUNE SYSTEM | 02/01/02 | Camelid VHH Domains in Complex with Porcine Pancreatic alpha-Amylase | CAMELUS DROMEDARIUS; SUS SCROFA | camelus dromedarius | null | sus scrofa | Desmyter, A., Spinelli, S., Payan, F., Lauwereys, M., Wyns, L., Muyldermans, S., Cambillau, C. | 2.0 | X-RAY DIFFRACTION | 0.236 | 0.203 | false | true | IGHV1 | null | null | 0 | -9.04 | SPR | null | 11960990 |
3eoa | B | A | 0 | J | protein | null | integrin alpha-l | IMMUNE SYSTEM/CELL ADHESION | 09/26/08 | Crystal structure the Fab fragment of Efalizumab in complex with LFA-1 I domain, Form I | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Li, S., Ding, J. | 2.8 | X-RAY DIFFRACTION | 0.264 | 0.225 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -11.8 | SPR | 25 | 19258452 |
6mwc | G | H | 0 | F | protein | null | e2 | VIRUS/IMMUNE SYSTEM | 10/29/18 | CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-5 antibody | EASTERN EQUINE ENCEPHALITIS VIRUS; MUS MUSCULUS | mus musculus | mus musculus | eastern equine encephalitis virus | Hasan, S.S., Sun, C., Kim, A.S., Watanabe, Y., Chen, C.L., Klose, T., Buda, G., Crispin, M., Diamond, M.S., Klimstra, W.B., Rossmann, M.G. | 7.5 | ELECTRON MICROSCOPY | null | null | false | false | IGHV9 | IGLV1 | Lambda | null | null | null | null | null |
6ehw | B | b | 0 | null | null | null | null | IMMUNE SYSTEM | 09/15/17 | scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery | HOMO SAPIENS | homo sapiens | null | null | Hargreaves, D. | 2.19 | X-RAY DIFFRACTION | 0.248 | 0.212 | true | true | unknown | unknown | unknown | null | null | null | null | null |
5wtg | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 12/11/16 | Crystal structure of the Fab fragment of anti-HAV antibody R10 | MUS MUSCULUS | mus musculus | mus musculus | null | Wang, X., Zhu, L., Dang, M., Hu, Z., Gao, Q., Yuan, S., Sun, Y., Zhang, B., Ren, J., Walter, T.S., Wang, J., Fry, E.E., Stuart, D.I., Rao, Z. | 2.907 | X-RAY DIFFRACTION | 0.266 | 0.201 | false | false | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
1mfd | H | L | 0 | H | carbohydrate | GLA | polysaccharide | IMMUNOGLOBULIN | 10/25/93 | THE SOLUTION STRUCTURE OF A TRISACCHARIDE-ANTIBODY COMPLEX: COMPARISON OF NMR MEASUREMENTS WITH A CRYSTAL STRUCTURE | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Zdanov, A., Cygler, M. | 2.1 | X-RAY DIFFRACTION | unknown | 0.183 | false | true | IGHV1 | IGLV1 | Lambda | 0.000005 | -7.243869 | Unknown | null | TBD |
6j6y | B | C | 0 | A | protein | null | fibroblast growth factor receptor 4 | TRANSFERASE/IMMUNE SYSTEM | 01/16/19 | FGFR4 D2 - Fab complex | HOMO SAPIENS; SYNTHETIC CONSTRUCT | synthetic construct | synthetic construct | homo sapiens | Takahashi, M., Hanzawa, H. | 2.15 | X-RAY DIFFRACTION | 0.258 | 0.193 | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
7dv4 | D | null | 0 | C | protein | null | cytotoxic t-lymphocyte protein 4 | IMMUNE SYSTEM | 01/12/21 | Crystal structure of anti-CTLA-4 VH domain in complex with human CTLA-4 | HOMO SAPIENS | homo sapiens | null | homo sapiens | Li, H., Gan, X., He, Y. | 2.38 | X-RAY DIFFRACTION | 0.258 | 0.221 | false | true | IGHV3 | null | null | null | null | null | null | null |
5cbe | A | B | 0 | E | protein | null | c-x-c motif chemokine 13 | IMMUNE SYSTEM | 06/30/15 | E10 in complex with CXCL13 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Tu, C., Bard, J., Mosyak, L. | 2.4 | X-RAY DIFFRACTION | 0.275 | 0.248 | true | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
4nm4 | H | L | 0 | null | null | null | null | immune system | 11/14/13 | Crystal structure of broadly neutralizing antibody CR8043 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Lee, P.S., Wilson, I.A. | 2.65 | X-RAY DIFFRACTION | 0.232 | 0.175 | false | false | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
7lf1 | K | L | 0 | M | protein | null | arginase-1 | HYDROLASE/IMMUNE SYSTEM | 01/15/21 | Trimeric human Arginase 1 in complex with mAb3 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Gomez-Llorente, Y., Scapin, G., Palte, R.L. | 4.04 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
3cm9 | A | L | 3 | null | null | null | null | IMMUNE SYSTEM | 03/21/08 | Solution Structure of Human SIgA2 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6vun | A | a | 0 | null | null | null | null | PROTEIN BINDING | 02/16/20 | Reverse Transcriptase Diabody with R83C Mutation | HOMO SAPIENS | homo sapiens | null | null | Chesterman, C., Arnold, E. | 1.4 | X-RAY DIFFRACTION | 0.167 | 0.138 | true | true | unknown | unknown | unknown | null | null | null | null | null |
6mpg | q | r | 0 | V | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 10/06/18 | Cryo-EM structure at 3.2 A resolution of HIV-1 fusion peptide-directed antibody, A12V163-b.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122 | MACACA MULATTA; HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Kwong, P.D. | 3.2 | ELECTRON MICROSCOPY | null | null | false | false | unknown | IGKV3 | Kappa | null | null | null | null | null |
2gsg | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 04/26/06 | Crystal structure of the Fv fragment of a monoclonal antibody specific for poly-glutamine | MUS MUSCULUS | mus musculus | mus musculus | null | Li, P., Huey-Tubman, K.E., West Jr., A.P., Bennett, M.J., Bjorkman, P.J. | 2.1 | X-RAY DIFFRACTION | 0.253 | 0.229 | false | true | IGHV5 | IGLV3 | Lambda | null | null | null | null | null |
7kn7 | B | null | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 11/04/20 | Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobody VHH W and antibody Fab CC12.3 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; VICUGNA PACOS; HOMO SAPIENS | vicugna pacos | null | severe acute respiratory syndrome coronavirus2 | Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A. | 2.73 | X-RAY DIFFRACTION | 0.241 | 0.203 | false | true | IGHV1 | null | null | null | null | null | null | null |
7ezv | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 06/02/21 | local CryoEM structure of the SARS-CoV-2 S6PV2 in complex with BD-812 Fab and BD-836 Fab | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Liu, P.L. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
7cwn | H | N | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 08/29/20 | P17-H014 Fab cocktail in complex with SARS-CoV-2 spike protein | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Wang, N., Wang, X. | 3.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV6 | Kappa | null | null | null | null | null |
1yqv | H | L | 0 | Y | protein | null | hen egg white lysozyme | IMMUNE SYSTEM | 02/02/05 | The crystal structure of the antibody Fab HyHEL5 complex with lysozyme at 1.7A resolution | MUS MUSCULUS; GALLUS GALLUS | mus musculus | mus musculus | gallus gallus | Cohen, G.H., Silverton, E.W., Padlan, E.A., Dyda, F., Wibbenmeyer, J.A., Wilson, R.C., Davies, D.R. | 1.7 | X-RAY DIFFRACTION | 0.234 | 0.195 | false | false | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
5csz | A | B | 0 | E | peptide | null | amyloid beta a4 protein | IMMUNE SYSTEM | 07/23/15 | CRYSTAL STRUCTURE OF GANTENERUMAB FAB FRAGMENT IN COMPLEX WITH ABETA 1-11 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Benz, J., Burger, D., Loetscher, H.R., Bohrmann, B. | 1.8 | X-RAY DIFFRACTION | 0.230 | 0.196 | false | true | IGHV3 | IGKV3 | Kappa | 0 | -10.599564 | Unknown | null | TBD |
3kym | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 12/06/09 | Crystal structure of Li33 IgG2 di-Fab | HOMO SAPIENS | homo sapiens | homo sapiens | null | Silvian, L.F., Pepinsky, R.B., Walus, L. | 2.62 | X-RAY DIFFRACTION | 0.339 | 0.259 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
1i9r | X | Y | 0 | C | protein | null | cd40 ligand | CYTOKINE/IMMUNE SYSTEM | 03/20/01 | STRUCTURE OF CD40L IN COMPLEX WITH THE FAB FRAGMENT OF HUMANIZED 5C8 ANTIBODY | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Karpusas, M., Lucci, J., Ferrant, J., Benjamin, C., Hsu, Y.-M. | 3.1 | X-RAY DIFFRACTION | 0.285 | 0.233 | false | false | IGHV1 | IGKV3D | Kappa | null | null | null | null | null |
5tf1 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 09/23/16 | Structure of chimeric 02-CC Fab, a VRC01-like germline antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Pancera, M. | 1.858 | X-RAY DIFFRACTION | 0.233 | 0.210 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7kf1 | A | B | 0 | C | protein | null | isoform l-vegf206 of vascular endothelial growth factor a | IMMUNE SYSTEM | 10/13/20 | Crystal structure of bH1 Fab variant (CDR H3 loop design 14_0130) in complex with VEGF | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Shi, R., Picard, M.-E., Manenda, M.S. | 2.45 | X-RAY DIFFRACTION | 0.232 | 0.189 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7nab | A | B | 0 | D | peptide | null | spike protein s2 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/21/21 | Crystal structure of human neutralizing mAb CV3-25 binding to SARS-CoV-2 S MPER peptide 1140-1165 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Chen, Y., Tolbert, W.D., Pazgier, M. | 2.15 | X-RAY DIFFRACTION | 0.239 | 0.185 | false | true | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
7zxf | D | E | 0 | A | protein | null | gametocyte surface protein p45/48 | CELL ADHESION | 05/20/22 | Pfs48/45 bound to monoclonal antibodies 10D8 and 85RF45.1 | Mus musculus; Plasmodium falciparum; Rattus norvegicus | mus musculus | mus musculus | plasmodium falciparum | Ko, K.T., Lennartz, F.L., Higgins, M.K. | 3.72 | X-RAY DIFFRACTION | 0.298 | 0.281 | false | true | IGHV5 | IGKV8 | Kappa | null | null | null | null | null |
7k66 | B | C | 0 | A | protein | null | coagulation factor viii,coagulation factor viii,coagulationfactor viii,coagulation factor viii | BLOOD CLOTTING/Immune System | 09/18/20 | Structure of Blood Coagulation Factor VIII in Complex with an Anti-C1 Domain Pathogenic Antibody Inhibitor | SUS SCROFA; HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | sus scrofa, homo sapiens | Childers, K.C., Gish, J., Jarvis, L., Peters, S., Garrels, C., Smith, I.W., Spencer, H.T., Spiegel, P.C. | 3.92 | X-RAY DIFFRACTION | 0.322 | 0.226 | false | true | IGHV9 | IGKV4 | Kappa | null | null | null | null | null |
6wbv | H | L | 0 | A | protein | null | solute carrier family 40 member 1 | TRANSLOCASE/IMMUNE SYSTEM/HORMONE | 03/27/20 | Structure of human ferroportin bound to hepcidin and cobalt in lipid nanodisc | HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Billesboelle, C.B., Azumaya, C.M., Gonen, S., Powers, A., Kretsch, R.C., Schneider, S., Arvedson, T., Dror, R.O., Cheng, Y., Manglik, A. | 2.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7ul7 | H | L | 0 | a | protein | null | unknown | VIRAL PROTEIN/IMMUNE SYSTEM | 04/04/22 | Lineage I (Pinneo) Lassa virus glycoprotein bound to 18.5C-M30 Fab | LASSA MAMMARENAVIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | lassa mammarenavirus | Buck, T.K., Enriquez, A.S., Hastie, K.M. | 3.59 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
3ob0 | M | K | 0 | M | Hapten | 2M6 | 7-DEOXY-L-GLYCERO-ALPHA-D-MANNO-HEPTOPYRANOSYL-(1->2)-ALPHA-D-MANNOPYRANOSYL-(1->2)-ALPHA-D-MANNOPYRANOSYL-(1->3)-ALPHA-D-MANNOPYRANOSE | IMMUNE SYSTEM | 08/06/10 | A non-self sugar mimic of the HIV glycan shield shows enhanced antigenicity | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Doores, K.J., Fulton, Z., Hong, V., Patel, M.K., Scanlan, C.N., Wormald, M.R., Finn, M.G., Burton, D.R., Wilson, I.A., Davis, B.G | 2.85 | X-RAY DIFFRACTION | 0.280 | 0.232 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6ppg | H | L | 0 | F | protein | null | interleukin-17f | CYTOKINE | 07/06/19 | Crystal structure of IL17FF bound to Fab fragments of MCAF5352A | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Huang, C.S., Yin, J.P., Hymowitz, S.G. | 2.75 | X-RAY DIFFRACTION | 0.275 | 0.224 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
3j3p | H | L | 0 | 1 | protein | null | protein vp1 | VIRUS/IMMUNE SYSTEM | 04/10/13 | Conformational Shift of a Major Poliovirus Antigen Confirmed by Immuno-Cryogenic Electron Microscopy: 135S Poliovirus and C3-Fab Complex | MUS MUSCULUS; HUMAN POLIOVIRUS 1 | mus musculus | mus musculus | human poliovirus 1 | Lin, J., Cheng, N., Hogle, J.M., Steven, A.C., Belnap, D.M. | 9.1 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
1xf2 | H | L | 0 | T | nucleic-acid | null | 5'-d(*tp*tp*t)-3' | IMMUNE SYSTEM/DNA | 09/13/04 | Structure of Fab DNA-1 complexed with dT3 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Schuermann, J.P., Prewitt, S.P., Deutscher, S.L., Tanner, J.J. | 2.3 | X-RAY DIFFRACTION | 0.242 | 0.202 | false | true | IGHV1 | IGKV12 | Kappa | null | null | null | null | null |
3j1s | H | L | 0 | A | protein | null | capsid protein vp1 | VIRUS/IMMUNE SYSTEM | 05/23/12 | Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20 | ADENO-ASSOCIATED VIRUS - 2; MUS MUSCULUS | mus musculus | mus musculus | adeno-associated virus - 2 | Chapman, M.S., McCraw, D.M. | 8.5 | ELECTRON MICROSCOPY / HOMOLOGY MODEL | null | null | false | false | IGHV3 | IGKV13 | Kappa | null | null | null | null | null |
5vco | B | A | 0 | F | protein | null | peptidase 1 | IMMUNE SYSTEM | 03/31/17 | THE CRYSTAL STRUCTURE OF DER P 1 ALLERGEN COMPLEXED WITH FAB FRAGMENT OF MAB 10B9 | MUS MUSCULUS; DERMATOPHAGOIDES PTERONYSSINUS | mus musculus | mus musculus | dermatophagoides pteronyssinus | Osinski, T., Majorek, K.A., Pomes, A., Offermann, L.R., Osinski, S., Glesner, J., Vailes, L.D., Chapman, M.D., Minor, W., Chruszcz, M. | 2.74 | X-RAY DIFFRACTION | 0.261 | 0.200 | false | true | IGHV3 | IGKV10 | Kappa | null | null | null | null | null |
6phh | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 06/25/19 | Unliganded human transmission blocking antibody 2544 | HOMO SAPIENS | homo sapiens | homo sapiens | null | McLeod, B.R., Julien, J.P. | 2.4 | X-RAY DIFFRACTION | 0.249 | 0.218 | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
6p79 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/05/19 | Engineered single chain antibody C9+C14 ScFv | MUS MUSCULUS | mus musculus | mus musculus | null | Zhang, Y., Li, W., Marshall, N. | 1.583 | X-RAY DIFFRACTION | 0.202 | 0.175 | false | true | IGHV14 | IGKV12 | Kappa | null | null | null | null | null |
7k93 | E | e | 0 | A | protein | null | non-structural protein 1 | VIRAL PROTEIN | 09/28/20 | DENV2 NS1 in complex with neutralizing 2B7 single chain Fab variable region (scFv) | DENGUE VIRUS 2; MUS MUSCULUS | mus musculus | null | dengue virus 2 | Akey, D.L., Smith, J.L. | 2.89 | X-RAY DIFFRACTION | 0.269 | 0.223 | true | true | unknown | unknown | unknown | null | null | null | null | null |
6vbp | C | D | 0 | E | peptide | null | envelope glycoprotein gp160 | IMMUNE SYSTEM/Viral Protein | 12/19/19 | Crystal structure of anti-HIV-1 antibody DH815 bound to gp120 V2 peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Janus, B.M., Ofek, G. | 2.298 | X-RAY DIFFRACTION | 0.229 | 0.180 | false | true | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
7or9 | A | B | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN | 06/04/21 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and COVOX-278 Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Ren, J., Stuart, D.I. | 2.34 | X-RAY DIFFRACTION | 0.230 | 0.194 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
3ubx | H | L | 0 | A | protein | null | antigen-presenting glycoprotein cd1d1 | IMMUNE SYSTEM | 10/25/11 | Crystal structure of the mouse CD1d-C20:2-aGalCer-L363 mAb Fab complex | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Yu, E.D., Zajonc, D.M. | 3.1 | X-RAY DIFFRACTION | 0.230 | 0.202 | false | false | IGHV9 | IGKV13 | Kappa | 0 | -10.366344 | Unknown | null | TBD |
7lf1 | D | E | 0 | B | protein | null | arginase-1 | HYDROLASE/IMMUNE SYSTEM | 01/15/21 | Trimeric human Arginase 1 in complex with mAb3 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Gomez-Llorente, Y., Scapin, G., Palte, R.L. | 4.04 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6fax | H | L | 0 | R | protein | null | tumor necrosis factor receptor superfamily member 5 | IMMUNE SYSTEM | 12/18/17 | Complex of Human CD40 Ectodomain with Lob 7.4 Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Orr, C.M., Tews, I., Pearson, A.R. | 2.99 | X-RAY DIFFRACTION | 0.231 | 0.185 | false | true | IGHV1 | IGKV10 | Kappa | null | null | null | null | null |
7b17 | B | null | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 11/23/20 | SARS-CoV-spike RBD bound to two neutralising nanobodies | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; VICUGNA PACOS; LAMA GLAMA | vicugna pacos, lama glama | null | severe acute respiratory syndrome coronavirus2 | Hallberg, B.M., Das, H. | 4.01 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
3sdy | H | L | 0 | B | A | protein | protein | NA | NA | hemagglutinin ha2 chain | hemagglutinin ha1 chain | Viral Protein/Immune System | 06/09/11 | Crystal Structure of Broadly Neutralizing Antibody CR8020 Bound to the Influenza A H3 Hemagglutinin | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Ekiert, D.C., Wilson, I.A. | 2.85 | X-RAY DIFFRACTION | 0.235 | 0.202 | false | true | IGHV1 | IGKV3 | Kappa | 0 | -12.48 | Other | 30 | 21737702 |
1jgv | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/26/01 | STRUCTURAL BASIS FOR DISFAVORED ELIMINATION REACTION IN CATALYTIC ANTIBODY 1D4 | MUS MUSCULUS | mus musculus | mus musculus | null | Larsen, N.A., Heine, A., Crane, L., Cravatt, B.F., Lerner, R.A., Wilson, I.A. | 1.85 | X-RAY DIFFRACTION | 0.247 | 0.206 | false | false | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
7q6e | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 11/07/21 | Beta049 fab in complex with SARS-CoV2 beta-Spike glycoprotein, The Beta mAb response underscores the antigenic distance to other SARS-CoV-2 variants | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Duyvesteyn, H.M.E., Ren, J., Stuart, D.I. | 2.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
1i8m | B | A | 0 | D | nucleic-acid | null | 5'-d(p*tp*t)-3' | IMMUNE SYSTEM/DNA | 03/14/01 | CRYSTAL STRUCTURE OF A RECOMBINANT ANTI-SINGLE-STRANDED DNA ANTIBODY FRAGMENT COMPLEXED WITH DT5 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Tanner, J.J., Komissarov, A.A., Deutscher, S.L. | 2.1 | X-RAY DIFFRACTION | 0.258 | 0.220 | false | true | IGHV1 | IGKV12 | Kappa | 0.000003 | -7.596979 | Unknown | null | TBD |
3n9g | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 05/29/10 | Crystal structure of the Fab fragment of the human neutralizing anti-West Nile Virus MAb CR4354 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Kaufmann, B., Rossmann, M.G. | 1.434 | X-RAY DIFFRACTION | 0.186 | 0.167 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
6db5 | I | M | 0 | Q | peptide | null | hiv-1 gp120 v3 peptide from ny5 strain | IMMUNE SYSTEM | 05/02/18 | Crystal structure of anti-HIV-1 V3 Fab TA6 in complex with a HIV-1 gp120 V3 peptide from NY5 strain | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Chan, K.-W., Kong, X.-P. | 2.599 | X-RAY DIFFRACTION | 0.283 | 0.227 | false | true | IGHV1 | IGLV3 | Lambda | null | null | null | null | null |
1mh5 | B | A | 0 | B | Hapten | HAL | N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE | IMMUNE SYSTEM | 08/19/02 | The Structure Of The Complex Of The Fab Fragment Of The Esterolytic Antibody MS6-164 and A Transition-State Analog | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Ruzheinikov, S.N., Muranova, T.A., Sedelnikova, S.E., Partridge, L.J., Blackburn, G.M., Murray, I.A., Kakinuma, H., Takashi, N., Shimazaki, K., Sun, J., Nishi, Y., Rice, D.W. | 2.1 | X-RAY DIFFRACTION | 0.288 | 0.218 | false | true | IGHV1 | IGKV2 | Kappa | 0 | -12.571059 | Unknown | null | TBD |
6x97 | J | K | 0 | G | protein | null | bg505 hiv-1 env gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/02/20 | Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 11A fragment antigen binding variable domain | HUMAN IMMUNODEFICIENCY VIRUS 1; ORYCTOLAGUS CUNICULUS | oryctolagus cuniculus | oryctolagus cuniculus | human immunodeficiency virus 1 | Ozorowski, G., Cottrell, C.A., Ward, A.B. | 3.65 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6vyv | I | M | 0 | F | protein | null | e2 glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 02/27/20 | Human mAbs broadly protect against infection of arthritiogenic alphaviruses by recognizing conserved elements of the MXR8 receptor binding domain | ROSS RIVER VIRUS (STRAIN T48); HOMO SAPIENS | homo sapiens | homo sapiens | ross river virus (strain t48) | Miller, A.S., Kuhn, R.J. | 6.33 | ELECTRON MICROSCOPY | null | null | false | true | IGHV9 | IGLV1 | Lambda | null | null | null | null | null |
6swr | D | null | 0 | null | null | null | null | TRANSPORT PROTEIN | 09/23/19 | Crystal structure of the lysosomal potassium channel MtTMEM175 T38A mutant soaked with zinc | LAMA GLAMA; ESCHERICHIA COLI (STRAIN K12); MARIVIRGA TRACTUOSA (STRAIN ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) | lama glama, escherichia coli (strain k12) | null | null | Brunner, J.D., Jakob, R.P., Schulze, T., Neldner, Y., Moroni, A., Thiel, G., Maier, T., Schenck, S. | 3.2 | X-RAY DIFFRACTION | 0.299 | 0.269 | false | true | IGHV1 | null | null | null | null | null | null | null |
5kzp | E | I | 0 | B | peptide | null | c1 epitope | VIRAL PROTEIN/IMMUNE SYSTEM | 07/25/16 | Structure of the HCV1-C1 Antibody-Antigen Complex | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | hepatitis c virus | Piepenbrink, K.H., Sundberg, E.J. | 2.262 | X-RAY DIFFRACTION | 0.261 | 0.218 | false | true | IGHV3 | IGKV3 | Kappa | 0 | -9.761033 | Unknown | null | TBD |
2kh2 | B | b | 27 | A | protein | null | interleukin-1 beta | Cytokine/IMMUNE SYSTEM | 03/23/09 | Solution structure of a scFv-IL-1B complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Wilkinson, I.C., Hall, C.J., Veverka, V., Muskett, F.W., Stephens, P.E., Taylor, R.J., Henry, A.J., Carr, M.D. | NOT | SOLUTION NMR | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
6dfh | H | L | 0 | A | protein | null | envelope glycoprotein gp160 | VIRAL PROTEIN/IMMUNE SYSTEM | 05/14/18 | BG505 MD64 N332-GT2 SOSIP trimer in complex with germline-reverted BG18 fragment antigen binding | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Ozorowski, G., Steichen, J.M., Schief, W.R., Ward, A.B. | 3.85 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGLV3 | Lambda | null | null | null | null | null |
1ztx | H | L | 0 | E | protein | null | envelope protein | Viral protein/Immune system | 05/27/05 | West Nile Virus Envelope Protein DIII in complex with neutralizing E16 antibody Fab | WEST NILE VIRUS; MUS MUSCULUS | mus musculus | mus musculus | west nile virus | Nybakken, G.E., Oliphant, T., Diamond, M.S., Fremont, D.H. | 2.5 | X-RAY DIFFRACTION | 0.282 | 0.208 | false | false | IGHV1 | IGKV6 | Kappa | null | null | null | null | null |
6dcv | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 05/08/18 | Crystal structure of human anti-tau antibody CBTAU-27.1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Zhu, X., Zhang, H., Wilson, I.A. | 1.9 | X-RAY DIFFRACTION | 0.229 | 0.186 | false | true | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
7v0v | A | null | 4 | null | null | null | null | IMMUNE SYSTEM | 05/11/22 | GFP Nanobody NMR Structure | SYNTHETIC CONSTRUCT | synthetic construct | null | null | Mueller, G.A. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6azz | F | E | 0 | D | protein | null | pfs25 | IMMUNE SYSTEM | 09/13/17 | Crystal structure of Pfs25 in complex with the transmission blocking antibody 1190 | HOMO SAPIENS; PLASMODIUM FALCIPARUM | homo sapiens | homo sapiens | plasmodium falciparum | Scally, S.W., McLeod, B., Bosch, A., King, C.R., Julien, J.P. | 2.4 | X-RAY DIFFRACTION | 0.217 | 0.191 | false | true | IGHV1 | IGLV3 | Lambda | 0 | -11.151229 | BLI | null | TBD |
7na7 | N | n | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 06/20/21 | Structures of human ghrelin receptor-Gi complexes with ghrelin and a synthetic agonist | HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | null | homo sapiens | homo sapiens | Liu, H., Sun, D., Sun, J., Zhang, C. | 2.7 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
6ikm | B | b | 0 | null | null | null | null | ANTIMICROBIAL PROTEIN | 10/16/18 | Crystal structure of SpuE-Spermidine in complex with ScFv5 | PSEUDOMONAS AERUGINOSA; HOMO SAPIENS | pseudomonas aeruginosa | homo sapiens | null | Wu, D., Sun, X. | 3.398 | X-RAY DIFFRACTION | 0.268 | 0.228 | true | true | unknown | unknown | unknown | null | null | null | null | null |
5ken | G | H | 0 | F | protein | null | ebola surface glycoprotein, gp2 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/09/16 | EBOV GP in complex with variable Fab domains of IgGs c4G7 and c13C6 | HOMO SAPIENS; ZAIRE EBOLAVIRUS (STRAIN MAYINGA-76); ZAIRE EBOLAVIRUS | homo sapiens | homo sapiens | zaire ebolavirus (strain mayinga-76) | Pallesen, J., Murin, C.D., de Val, N., Cottrell, C.A., Hastie, K.M., Turner, H.L., Fusco, M.L., Flyak, A.I., Zeitlin, L., Crowe Jr., J.E., Andersen, K.G., Saphire, E.O., Ward, A.B. | 4.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV12 | Kappa | null | null | null | null | null |
2fjg | B | A | 0 | V | protein | null | vascular endothelial growth factor a | HORMONE/GROWTH FACTOR/IMMUNE SYSTEM | 01/02/06 | Structure of the G6 Fab, a phage derived Fab fragment, in complex with VEGF | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Wiesmann, C. | 2.8 | X-RAY DIFFRACTION | 0.239 | 0.199 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -10.92 | SPR | 37 | 16373345 |
6wt3 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 05/01/20 | Structural basis for the binding of monoclonal antibody 5D2 to the tryptophan-rich lipid-binding loop in lipoprotein lipase | MUS MUSCULUS | mus musculus | mus musculus | null | Luz, J.G., Birrane, G., Young, S.G., Meiyappan, M., Ploug, M. | 2.85 | X-RAY DIFFRACTION | 0.308 | 0.253 | false | false | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
5u68 | E | e | 0 | A | protein | null | chimera protein of fusion glycoprotein f0 and envelopeglycoprotein | VIRAL PROTEIN/Immune System | 12/07/16 | Structural basis for antibody cross-neutralization of respiratory syncytial virus and human metapneumovirus | HUMAN RESPIRATORY SYNCYTIAL VIRUS A (STRAIN A2); MYZUS PERSICAE | myzus persicae | null | human respiratory syncytial virus a (straina2), human immunodeficiency virus 1 | Wen, X., Jardetzky, T.S. | 3.083 | X-RAY DIFFRACTION | 0.239 | 0.184 | true | true | unknown | unknown | unknown | null | null | null | null | null |
7fg2 | D | null | 0 | A | protein | null | spike glycoprotein | PROTEIN BINDING | 07/25/21 | Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHH, composite map | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | Song, C., Murata, K., Katayama, K. | 4.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7lxy | N | O | 0 | J | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 03/05/21 | SARS-CoV-2 S/S2M11/S2X333 Global Refinement | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | McCallum, M., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 2.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
3qhz | I | M | 0 | null | null | null | null | IMMUNE SYSTEM | 01/26/11 | Crystal Structure of human anti-influenza Fab 2D1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Ekiert, D.C., Wilson, I.A. | 1.55 | X-RAY DIFFRACTION | 0.206 | 0.180 | false | true | IGHV2 | IGLV1 | Lambda | null | null | null | null | null |
5f7m | D | null | 0 | B | protein | null | adhesin binding fucosylated histo-blood group antigen | CELL ADHESION | 12/08/15 | Blood group antigen binding adhesin BabA of Helicobacter pylori strain 17875 in complex with blood group H Lewis b hexasaccharide | HELICOBACTER PYLORI; LAMA GLAMA | lama glama | null | helicobacter pylori | Moonens, K., Gideonsson, P., Subedi, S., Romao, E., Oscarson, S., Muyldermans, S., Boren, T., Remaut, H. | 2.72 | X-RAY DIFFRACTION | 0.218 | 0.179 | false | true | IGHV1 | null | null | null | null | null | null | null |
5ghw | H | L | 0 | P | peptide | null | endogenous retrovirus group k member 8 env polyprotein | IMMUNE SYSTEM | 06/21/16 | Crystal structure of broad neutralizing antibody 10E8 with long epitope bound | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Caaveiro, J.M.M., Rujas, E., Morante, K., Nieva, J.L., Tsumoto, K. | 2.4 | X-RAY DIFFRACTION | 0.230 | 0.192 | false | true | IGHV3 | IGLV3 | Lambda | 0 | -10.938139 | Unknown | null | TBD |
5m6a | null | D | 0 | null | null | null | null | IMMUNE SYSTEM | 10/24/16 | Crystal structure of cardiotoxic Bence-Jones light chain dimer H9 | HOMO SAPIENS | null | homo sapiens | null | Oberti, L., Rognoni, P., Bacarizo, J., Bolognesi, M., Ricagno, S. | 1.64 | X-RAY DIFFRACTION | 0.203 | 0.183 | false | false | null | IGLV2 | Lambda | null | null | null | null | null |
6azk | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 09/11/17 | Structure of cetuximab with aminoheptanoic acid-linked N-(3-hydroxypropyl)-L-arginine meditope variant | MUS MUSCULUS; HOMO SAPIENS; SYNTHETIC CONSTRUCT | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Bzymek, K.P., Williams, J.C. | 2.477 | X-RAY DIFFRACTION | 0.213 | 0.170 | false | true | IGHV2 | IGKV5 | Kappa | 0.000002 | -7.691979 | Unknown | null | TBD |
4k3g | null | B | 0 | B | carbohydrate | MAN | ALPHA-D-MANNOSE | IMMUNE SYSTEM | 04/10/13 | Immunoglobulin lambda variable domain L5(L89S) fluorogen activating protein | HOMO SAPIENS | null | homo sapiens | homo sapiens | Stanfield, R.L., Szent-Gyorgyi, C., Wilson, I.A. | 1.93 | X-RAY DIFFRACTION | 0.231 | 0.193 | false | true | null | IGLV7 | Lambda | null | null | null | null | null |
7qnc | G | null | 0 | D | protein | null | gamma-aminobutyric acid receptor subunit beta-3 | MEMBRANE PROTEIN | 12/20/21 | Cryo-EM structure of human full-length extrasynaptic alpha4beta3delta GABA(A)R in complex with THIP (gaboxadol), histamine and nanobody Nb25 | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Sente, A., Desai, R., Naydenova, K., Malinauskas, T., Jounaidi, Y., Miehling, J., Zhou, X., Masiulis, S., Hardwick, S.W., Chirgadze, D.Y., Miller, K.W., Aricescu, A.R. | 2.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6jsz | D | null | 0 | A | protein | null | beta-secretase 2 | HYDROLASE/IMMUNE SYSTEM | 04/08/19 | BACE2 xaperone complex with N-{3-[(5R)-3-amino-5-methyl-9,9-dioxo-2,9lambda6-dithia-4-azaspiro[5.5]undec-3-en-5-yl]-4-fluorophenyl}-5-(fluoromethoxy)pyrazine-2-carboxamide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | null | homo sapiens | Fujimoto, K., Matsuoka, E., Asada, N., Tadano, G., Yamamoto, T., Nakahara, K., Fuchino, K., Ito, H., Kanegawa, N., Moechars, D., Gijsen, H.J.M., Kusakabe, K.I. | 1.53 | X-RAY DIFFRACTION | 0.237 | 0.225 | false | true | IGHV3 | null | null | null | null | null | null | null |
7z1b | D | null | 0 | C | protein | null | spike protein s1 | ANTIVIRAL PROTEIN | 02/24/22 | Nanobody H11-A10 and F2 bound to RBD | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; LAMA GLAMA | lama glama | null | severe acute respiratory syndrome coronavirus2 | Mikolajek, H., Naismith, J.H. | 2.3 | X-RAY DIFFRACTION | 0.243 | 0.198 | false | true | IGHV1 | null | null | null | null | null | null | null |
7s0d | H | L | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 08/30/21 | Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody N-612-014 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Barnes, C.O., Bjorkman, P.J. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7niw | C | B | 0 | A | protein | null | phosphatidylcholine translocator abcb4 | PROTEIN TRANSPORT | 02/14/21 | Nanodisc reconstituted human ABCB4 in complex with 4B1-Fab (posaconazole-bound, inward-open conformation) | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Nosol, K., Locher, K.P. | 3.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5vm4 | A | null | 0 | null | null | null | null | UNKNOWN FUNCTION | 04/26/17 | The apo form of the triclocarban-binding single domain camelid nanobody VHH T10 | LAMA GLAMA | lama glama | null | null | Tabares-da Rosa, S., Gonzalez-Sapienza, G., Wilson, D.K. | 1.9 | X-RAY DIFFRACTION | 0.241 | 0.197 | false | true | unknown | unknown | unknown | null | null | null | null | null |
6dzl | I | L | 0 | D | C | protein | protein | NA | NA | ebola virus makona gp2 | ebola virus makona gp1 | VIRAL PROTEIN | 07/05/18 | Ebola virus Makona variant GP (mucin-deleted) in complex with pan-ebolavirus human antibody ADI-15878 Fab | ZAIRE EBOLAVIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | zaire ebolavirus | zaire ebolavirus | Murin, C.D., Ward, A.B. | 4.14 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4xbg | G | I | 0 | null | null | null | null | IMMUNE SYSTEM | 12/16/14 | Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA): 2.73 A resolution | HOMO SAPIENS | homo sapiens | homo sapiens | null | Irimia, A., Stanfield, R.L., Wilson, I.A. | 2.73 | X-RAY DIFFRACTION | 0.246 | 0.202 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7n9v | H | null | 0 | K | protein | null | capsid protein | VIRAL PROTEIN/IMMUNE SYSTEM | 06/18/21 | CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions | Human immunodeficiency virus 1; Lama glama | lama glama | null | human immunodeficiency virus 1 | Tripler, T.N. | 3.45 | X-RAY DIFFRACTION | 0.258 | 0.212 | false | true | IGHV1 | null | null | null | null | null | null | null |
3hae | I | G | 0 | D | F | protein | peptide | NA | NA | hla class i histocompatibility antigen, a-2 alpha chain | nyeso-1 peptide | IMMUNE SYSTEM | 05/01/09 | Rational development of high-affinity T-cell receptor-like antibodies | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | | Stewart-Jones, G., Wadle, A., Hombach, A., Shenderov, E., Held, G., Fischer, E. | 2.9 | X-RAY DIFFRACTION | 0.283 | 0.201 | false | true | IGHV3 | IGLV2 | Lambda | 0 | -10 | SPR | null | 19307587 |
6cvk | B | b | 0 | D | protein | null | capsid protein | VIRAL PROTEIN/IMMUNE SYSTEM | 03/28/18 | Hepatitis B e-antigen in complex with scFv e13 | ORYCTOLAGUS CUNICULUS; HEPATITIS B VIRUS | oryctolagus cuniculus | null | hepatitis b virus | Eren, E., Steven, A.C., Wingfield, P.T. | 2.38 | X-RAY DIFFRACTION | 0.221 | 0.175 | true | true | unknown | unknown | unknown | null | null | null | null | null |
7t0h | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 11/29/21 | Crystal structure of S25-39 Fab Unliganded 2 | MUS MUSCULUS | mus musculus | mus musculus | null | Legg, M.S.G., Blackler, R.J., Evans, S.V. | 1.3 | X-RAY DIFFRACTION | 0.200 | 0.148 | false | true | IGHV7 | IGKV8 | Kappa | null | null | null | null | null |
1mcn | null | A | 0 | P | peptide | null | peptide n-acetyl-d-his-l-pro-nh2 | IMMUNE SYSTEM | 02/25/93 | PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS | HOMO SAPIENS | null | homo sapiens | null | Edmundson, A.B., Harris, D.L., Fan, Z.-C., Guddat, L.W. | 2.7 | X-RAY DIFFRACTION | unknown | 0.183 | false | true | null | IGLV2 | Lambda | null | null | null | null | null |
7czs | H | K | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/09/20 | S protein of SARS-CoV-2 in complex bound with P5A-1B8_3B | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Yan, R.H., Zhang, Y.Y., Li, Y.N., Zhou, Q. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5bo1 | H | L | 0 | B | protein | null | protein jagged-1 | Signaling protein/Immune system | 05/26/15 | Crystal structure of a human Jag1 fragment in complex with an anti-Jag1 Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Payandeh, J., de Leon-Boenig, G. | 2.56 | X-RAY DIFFRACTION | 0.259 | 0.220 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -12.417858 | SPR | null | TBD |
5u68 | G | g | 0 | C | protein | null | chimera protein of fusion glycoprotein f0 and envelopeglycoprotein | VIRAL PROTEIN/Immune System | 12/07/16 | Structural basis for antibody cross-neutralization of respiratory syncytial virus and human metapneumovirus | HUMAN RESPIRATORY SYNCYTIAL VIRUS A (STRAIN A2); MYZUS PERSICAE | myzus persicae | null | human respiratory syncytial virus a (straina2), human immunodeficiency virus 1 | Wen, X., Jardetzky, T.S. | 3.083 | X-RAY DIFFRACTION | 0.239 | 0.184 | true | true | unknown | unknown | unknown | null | null | null | null | null |
5gks | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 07/05/16 | Crystal structure of SLE patient-derived anti-DNA antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Arimori, T., Sakakibara, S., Kikutani, H., Takagi, J. | 2.05 | X-RAY DIFFRACTION | 0.255 | 0.217 | false | true | IGHV4 | IGLV2 | Lambda | null | null | null | null | null |
7zmt | C | null | 0 | A | protein | null | atp-dependent dna helicase q5 | HYDROLASE | 04/19/22 | Crystal structure of human RECQL5 helicase APO form in complex with engineered nanobody (Gluebody) G5-006 | Homo sapiens; Lama glama | lama glama | null | homo sapiens | Ye, M., Makola, M., Newman, J.A., Fairhead, M., MacLean, E., Krojer, T., Aitkenhead, H., Bountra, C., Gileadi, O., von Delft, F. | 2.5 | X-RAY DIFFRACTION | 0.288 | 0.254 | false | true | IGHV1 | null | null | null | null | null | null | null |
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