pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6orn | O | P | 0 | R | protein | null | rc1 variant of hiv-1 env glycoprotein gp120 | VIRAL PROTEIN/Immune System | 04/30/19 | Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch bNAb 10-1074 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Abernathy, M.E., Gristick, H.B., Bjorkman, P.J. | 4.05 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | unknown | unknown | null | null | null | null | null |
5kel | P | T | 0 | G | protein | null | ebola surface glycoprotein, gp2 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/09/16 | EBOV GP in complex with variable Fab domains of IgGs c2G4 and c13C6 | ZAIRE EBOLAVIRUS; HOMO SAPIENS; ZAIRE EBOLAVIRUS (STRAIN MAYINGA-76) | homo sapiens | homo sapiens | zaire ebolavirus | Pallesen, J., Murin, C.D., de Val, N., Cottrell, C.A., Hastie, K.M., Turner, H.L., Fusco, M.L., Flyak, A.I., Zeitlin, L., Crowe Jr., J.E., Andersen, K.G., Saphire, E.O., Ward, A.B. | 4.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV6 | IGKV12 | Kappa | null | null | null | null | null |
7nk2 | F | null | 0 | null | null | null | null | VIRAL PROTEIN | 02/17/21 | 1918 H1N1 Viral influenza polymerase heterotrimer with Nb8202 core | INFLUENZA A VIRUS (A/BREVIG MISSION/1/1918(H1N1)); INFLUENZA A VIRUS (STRAIN A/BREVIG MISSION/1/1918 H1N1); STAPHYLOCOCCUS AUREUS; CAMELIDAE MIXED LIBRARY; SYNTHETIC CONSTRUCT | camelidae mixed library | null | null | Keown, J.R., Carrique, L., Fodor, E., Grimes, J.M. | 4.84 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7ndd | F | G | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN, IMMUNE SYSTEM | 01/30/21 | EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-159 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D. | 4.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
6b73 | D | null | 0 | A | protein | null | soluble cytochrome b562, kappa-type opioid receptor | MEMBRANE PROTEIN/AGONIST | 10/03/17 | Crystal Structure of a nanobody-stabilized active state of the kappa-opioid receptor | ESCHERICHIA COLI; HOMO SAPIENS; LAMA GLAMA | lama glama | null | escherichia coli, homo sapiens | Che, T., Majumdar, S., Zaidi, S.A., Kormos, C., McCorvy, J.D., Wang, S., Mosier, P.D., Uprety, R., Vardy, E., Krumm, B.E., Han, G.W., Lee, M.Y., Pardon, E., Steyaert, J., Huang, X.P., Strachan, R.T., Tribo, A.R., Pasternak, G.W., Carroll, I.F., Stevens, R.C., Cherezov, V., Katritch, V., Wacker, D., Roth, B.L. | 3.1 | X-RAY DIFFRACTION | 0.275 | 0.254 | false | true | IGHV1 | null | null | null | null | null | null | null |
2omb | null | A | 0 | null | null | null | null | Immune system | 01/21/07 | Bence Jones KWR Protein- Immunoglobulin Light Chain Dimer, P3(1)21 Crystal Form | HOMO SAPIENS | null | homo sapiens | null | Makino, D.L., Larson, S.B., McPherson, A. | 2.9 | X-RAY DIFFRACTION | 0.284 | 0.235 | false | false | null | IGLV2 | Lambda | null | null | null | null | null |
3auv | D | d | 0 | null | null | null | null | IMMUNE SYSTEM | 02/16/11 | Predicting Amino Acid Preferences in the Complementarity Determining Regions of an Antibody-Antigen Recognition Interface | HOMO SAPIENS | homo sapiens | null | null | Yu, C.M., Peng, H.P., Chen, I.C., Lee, Y.C., Chen, J.B., Tsai, K.C., Chen, C.T., Chang, J.Y., Yang, E.W., Hsu, P.C., Jian, J.W., Hsu, H.J., Chang, H.J., Hsu, W.L., Huang, K.F., Ma, A.C., Yang, A.S. | 2.4 | X-RAY DIFFRACTION | 0.251 | 0.216 | true | true | unknown | unknown | unknown | null | null | null | null | null |
7a25 | E | null | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN | 08/16/20 | Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing sybodies (Sb23) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; SYNTHETIC CONSTRUCT | synthetic construct | null | severe acute respiratory syndrome coronavirus2 | Hallberg, B.M., Das, H. | 3.06 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
5u15 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 11/27/16 | Crystal Structure of DH270.UCA3 (unliganded) from the DH270 Broadly Neutralizing N332-glycan Dependent Lineage | HOMO SAPIENS | homo sapiens | homo sapiens | null | Fera, D., Harrison, S.C. | 2.26 | X-RAY DIFFRACTION | 0.255 | 0.216 | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
1i3v | B | null | 0 | null | null | null | null | IMMUNE SYSTEM | 02/16/01 | THREE-DIMENSIONAL STRUCTURE OF A LAMA VHH DOMAIN UNLIGANDED | LAMA GLAMA | lama glama | null | null | Spinelli, S., Tegoni, M., Frenken, L., van Vliet, C., Cambillau, C. | 2.03 | X-RAY DIFFRACTION | 0.250 | 0.212 | false | true | IGHV1 | null | null | null | null | null | null | null |
2w0k | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 08/19/08 | Crystal structure of the recombinant variable domain 6JAL2 | HOMO SAPIENS | null | homo sapiens | null | Rudino-Pinera, E., Gonzalezrubio-Garrido, P., Horjales, E. | 2.35 | X-RAY DIFFRACTION | 0.242 | 0.209 | false | false | null | IGLV6 | Lambda | null | null | null | null | null |
7qbg | G | null | 0 | A | D | protein | protein | NA | NA | transcobalamin-2 | cd320 antigen | TRANSPORT PROTEIN | 11/19/21 | TC:CD320 in complex with nanobody TC-Nb4 | HOMO SAPIENS; VICUGNA PACOS | vicugna pacos | null | homo sapiens | homo sapiens | Bloch, J.S., Locher, K.P. | 2.69 | X-RAY DIFFRACTION | 0.285 | 0.227 | false | true | IGHV1 | null | null | null | null | null | null | null |
1t04 | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 04/07/04 | Three dimensional structure of a humanized anti-IFN-Gamma Fab in C2 space group | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bourne, P.C., Terzyan, S.S., Cloud, G., Landolfi, N.F., Vasquez, M., Edmundson, A.B. | 3.0 | X-RAY DIFFRACTION | 0.293 | 0.217 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
1lo4 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/03/02 | Retro-Diels-Alderase Catalytic antibody 9D9 | MUS MUSCULUS | mus musculus | mus musculus | null | Hugot, M., Reymond, J.L., Baumann, U. | 2.4 | X-RAY DIFFRACTION | 0.308 | 0.235 | false | false | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
5waw | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/27/17 | FcAbVance: Increasing our knowledge of antibody structural space to enable faster and better decision-making in antibody drug discovery | HOMO SAPIENS | homo sapiens | homo sapiens | null | Williams, S.P., Reid, R.A., Convery, M. | 2.25 | X-RAY DIFFRACTION | 0.280 | 0.231 | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
4m5y | I | M | 0 | null | null | null | null | IMMUNE SYSTEM | 08/08/13 | Crystal structure of broadly neutralizing Fab 5J8 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Lee, P.S., Wilson, I.A. | 1.55 | X-RAY DIFFRACTION | 0.186 | 0.172 | false | true | IGHV4 | IGLV3 | Lambda | null | null | null | null | null |
7p5w | G | null | 0 | A | protein | null | volume-regulated anion channel subunit lrrc8a | MEMBRANE PROTEIN | 07/15/21 | Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb2 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | synthetic construct | null | mus musculus | Deneka, D., Rutz, S., Sawicka, M. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
3chn | A | L | 0 | null | null | null | null | IMMUNE SYSTEM | 03/10/08 | Solution structure of human secretory IgA1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Almogren, A., Furtado, P.B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING / HOMOLOGY MODEL | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6a9k | B | A | 0 | B | Hapten | 9T0 | 5-[(2R,3R)-2-[2,2-bis(chloranyl)ethanoylamino]-3-(4-nitrophenyl)-3-[oxidanyl-[[4-[2,2,2-tris(fluoranyl)ethanoylamino]phenyl]methyl]phosphoryl]oxy-propoxy]-5-oxidanylidene-pentanoic acid | IMMUNE SYSTEM | 07/13/18 | Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Tsuchiya, Y., Fujii, I., Tada, T., Yamaguchi, A., Tsumuraya, T., Kumon, A. | 1.9 | X-RAY DIFFRACTION | 0.249 | 0.194 | false | false | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
5jw4 | Q | R | 0 | F | E | protein | protein | NA | NA | hemagglutinin | hemagglutinin | IMMUNE SYSTEM | 05/11/16 | Structure of MEDI8852 Fab Fragment in Complex with H5 HA | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Neu, U., Collins, P.J., Walker, P.A., Vorlaender, M.K., Ogrodowicz, R.W., Martin, S.R., Gamblin, S.J., Skehel, J.J. | 3.7 | X-RAY DIFFRACTION | 0.285 | 0.274 | false | true | IGHV6 | IGKV1 | Kappa | null | null | null | null | null |
7kdu | C | null | 0 | B | A | protein | protein | NA | NA | ricin chain b | ricin chain a | TOXIN | 10/09/20 | Ricin bound to VHH antibody V5E4 | VICUGNA PACOS; RICINUS COMMUNIS | vicugna pacos | null | ricinus communis | ricinus communis | Rudolph, M.J. | 2.809 | X-RAY DIFFRACTION | 0.294 | 0.237 | false | true | IGHV1 | null | null | null | null | null | null | null |
2omb | null | B | 0 | null | null | null | null | Immune system | 01/21/07 | Bence Jones KWR Protein- Immunoglobulin Light Chain Dimer, P3(1)21 Crystal Form | HOMO SAPIENS | null | homo sapiens | null | Makino, D.L., Larson, S.B., McPherson, A. | 2.9 | X-RAY DIFFRACTION | 0.284 | 0.235 | false | false | null | IGLV2 | Lambda | null | null | null | null | null |
6xey | H | L | 0 | A | protein | null | sars-cov-2 spike glycoprotein | VIRAL PROTEIN/Immune System | 06/14/20 | Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-4 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Rapp, M., Shapiro, L., Ho, D.D. | 3.25 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
6mtp | H | L | 0 | P | peptide | null | rv217 founder virus gp41 peptide | IMMUNE SYSTEM | 10/21/18 | Crystal structure of VRC42.04 Fab in complex with gp41 peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Kwon, Y.D., Druz, A., Law, W.H., Peng, D., Zhang, B., Doria-Rose, N.A., Kwong, P.D. | 2.036 | X-RAY DIFFRACTION | 0.223 | 0.199 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
3nh7 | I | M | 0 | B | protein | null | bone morphogenetic protein receptor type-1a | IMMUNE SYSTEM | 06/14/10 | Crystal structure of the neutralizing Fab fragment AbD1556 bound to the BMP type I receptor IA | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Mueller, T.D., Harth, S., Sebald, W. | 2.7 | X-RAY DIFFRACTION | 0.280 | 0.234 | false | true | IGHV3 | IGLV3 | Lambda | 0 | -10.5 | SPR | 25 | 20927405 |
4hcr | H | L | 0 | A | protein | null | mucosal addressin cell adhesion molecule 1 | IMMUNE SYSTEM | 10/01/12 | Crystal structure of human MAdCAM-1 D1D2 complexed with Fab PF-547659 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Springer, T., Yu, Y., Zhu, J. | 2.3 | X-RAY DIFFRACTION | 0.208 | 0.153 | false | true | IGHV1 | IGKV2D | Kappa | null | null | null | null | null |
6ejg | D | d | 0 | B | protein | null | cd81 antigen | CELL ADHESION | 09/21/17 | CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX WITH SINGLE CHAIN FV FRAGMENT 4 | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Harris, S.F., Wong, A., Kuglstatter, A. | 2.82 | X-RAY DIFFRACTION | 0.263 | 0.227 | true | true | unknown | unknown | unknown | 0 | -12.403046 | SPR | null | TBD |
7t4s | J | K | 0 | A | protein | null | envelope glycoprotein h | VIRAL PROTEIN/Immune System | 12/10/21 | CryoEM structure of the HCMV Pentamer gH/gL/UL128/UL130/UL131A in complex with NRP2 and neutralizing fabs 8I21 and 13H11 | HUMAN BETAHERPESVIRUS 5; HOMO SAPIENS | homo sapiens | homo sapiens | human betaherpesvirus 5 | Kschonsak, M., Johnson, M.C., Schelling, R., Green, E.M., Rouge, L., Ho, H., Patel, N., Kilic, C., Kraft, E., Arthur, C.P., Rohou, A.L., Comps-Agrar, L., Martinez-Martin, N., Perez, L., Payandeh, J., Ciferri, C. | 3.1 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
2a0l | D | C | 0 | A | protein | null | voltage-gated potassium channel | Membrane Protein | 06/16/05 | Crystal structure of KvAP-33H1 Fv complex | AEROPYRUM PERNIX; MUS MUSCULUS | mus musculus | mus musculus | aeropyrum pernix | Lee, S.Y., Lee, A., Chen, J., Mackinnon, R. | 3.9 | X-RAY DIFFRACTION | 0.392 | 0.358 | false | false | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
1yym | H | L | 0 | G | protein | null | exterior membrane glycoprotein(gp120) | Viral protein/Immune system | 02/25/05 | crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Huang, C.C., Stricher, F., Martin, L., Decker, J.M., Majeed, S., Barthe, P., Hendrickson, W.A., Robinson, J., Roumestand, C., Sodroski, J., Wyatt, R., Shaw, G.M., Vita, C., Kwong, P.D. | 2.2 | X-RAY DIFFRACTION | 0.268 | 0.209 | false | true | IGHV1 | IGKV3 | Kappa | 0.000009 | -6.85286 | SPR | null | TBD |
7aue | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1,isoform gnas-2 of guanine nucleotide-binding protein g(s) subunit alpha isoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 11/02/20 | Melanocortin receptor 4 (MC4R) Gs protein complex | HOMO SAPIENS; MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | null | homo sapiens | homo sapiens | Degtjarik, O., Israeli, H., Prabahar, V., Shalev-Benami, M. | 2.97 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
6hhc | H | L | 0 | A | protein | null | coagulation factor xi | BLOOD CLOTTING | 08/27/18 | Allosteric Inhibition as a new mode of Action for BAY 1213790, a Neutralizing Antibody Targeting the Activated form of Coagulation Factor XI | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Schaefer, M., Buchmueller, A., Dittmer, F., Strassburger, J., Wilmen, A. | 2.7 | X-RAY DIFFRACTION | 0.314 | 0.227 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4xcn | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 12/18/14 | Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA); 2.9 A resolution | HOMO SAPIENS | homo sapiens | homo sapiens | null | Irimia, A., Stanfield, R.L., Wilson, I.A. | 2.9 | X-RAY DIFFRACTION | 0.246 | 0.193 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
5udc | H | L | 0 | F | protein | null | fusion glycoprotein f0 | Viral Protein/Immune System | 12/26/16 | Crystal Structure of RSV F A2 Bound to MEDI8897 | HOMO SAPIENS; HUMAN RESPIRATORY SYNCYTIAL VIRUS A (STRAIN A2) | homo sapiens | homo sapiens | human respiratory syncytial virus a (straina2) | McLellan, J.S. | 3.45 | X-RAY DIFFRACTION | 0.232 | 0.175 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7mxp | I | K | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 05/19/21 | Cryo-EM structure of NTD-directed neutralizing antibody LP5 Fab in complex with SARS-CoV-2 S2P spike | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Reddem, E.R., Casner, R.G., Shapiro, L. | 4.46 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
6q20 | H | L | 0 | A | protein | null | neuraminidase | VIRAL PROTEIN,HYDROLASE/IMMUNE SYSTEM | 08/06/19 | Crystal structure of human 1E01 Fab in complex with influenza virus neuraminidase from A/Japan/305/1957 (H2N2) | INFLUENZA A VIRUS (STRAIN A/JAPAN/305/1957 H2N2); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (strain a/japan/305/1957h2n2) | Zhu, X., Wilson, I.A. | 2.45 | X-RAY DIFFRACTION | 0.272 | 0.217 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2kqn | null | A | 18 | null | null | null | null | IMMUNE SYSTEM | 11/11/09 | Solution structure of the AL-09 H87Y immunoglobulin light chain variable domain | HOMO SAPIENS | null | homo sapiens | null | Volkman, B.F., Peterson, F.C., Ramirez-Alvarado, M., Baden, E.M. | NOT | SOLUTION NMR | null | null | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
1vge | H | L | 0 | null | null | null | null | IMMUNOGLOBULIN | 01/04/96 | TR1.9 FAB FRAGMENT OF A HUMAN IGG1 KAPPA AUTOANTIBODY | HOMO SAPIENS | homo sapiens | homo sapiens | null | Chacko, S., Padlan, E.A. | 2.0 | X-RAY DIFFRACTION | unknown | 0.180 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7whz | H | L | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN | 01/01/22 | SARS-CoV-2 spike protein in complex with three human neutralizing antibodies | Homo sapiens; Severe acute respiratory syndrome coronavirus 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zheng, Q., Li, S., Sun, H., Zheng, Z., Wang, S. | 3.42 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
5uhy | J | I | 0 | C | E | protein | protein | NA | NA | envelope protein | envelope protein | VIRUS/IMMUNE SYSTEM | 01/12/17 | A Human Antibody Against Zika Virus Crosslinks the E Protein to Prevent Infection | HOMO SAPIENS; ZIKA VIRUS | homo sapiens | homo sapiens | zika virus | zika virus | Hasan, S.S., Miller, A., Sapparapu, G., Fernandez, E., Klose, T., Long, F., Fokine, A., Porta, J.C., Jiang, W., Diamond, M.S., Crowe Jr., J.E., Kuhn, R.J., Rossmann, M.G. | 6.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV6 | Kappa | null | null | null | null | null |
7mfg | J | K | 0 | I | G | protein | protein | NA | NA | hemagglutinin ha2 chain | hemagglutinin ha1 chain | VIRAL PROTEIN/IMMUNE SYSTEM | 04/09/21 | Cryo-EM structure of the VRC310 clinical trial, vaccine-elicited, human antibody 310-030-1D06 Fab in complex with an H1 NC99 HA trimer | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Gorman, J., Kwong, P.D. | 3.87 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7whj | D | null | 0 | C | A | protein | protein | NA | NA | spike glycoprotein | spike glycoprotein | VIRAL PROTEIN | 12/30/21 | The state 1 complex structure of Omicron spike with Bn03 (1-up RBD, 3 nanobodies) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | severe acute respiratory syndrome coronavirus2 | Zhan, W.Q., Zhang, X., Chen, Z.G., Sun, L. | 3.27 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6oy4 | D | C | 0 | A | protein | null | der p 2 variant 3 | allergen/immune system | 05/14/19 | Crystal structure of complex between recombinant Der p 2.0103 and Fab fragment of 7A1 | DERMATOPHAGOIDES PTERONYSSINUS; MUS MUSCULUS | mus musculus | mus musculus | dermatophagoides pteronyssinus | Kapingidza, A.B., Offermann, L.R., Glesner, J., Wunschmann, S., Vailes, L.D., Chapman, M.D.C., Pomes, A., Chruszcz, M. | 2.45 | X-RAY DIFFRACTION | 0.260 | 0.203 | false | true | IGHV9 | IGKV3 | Kappa | null | null | null | null | null |
5a16 | C | D | 0 | null | null | null | null | null | 04/28/15 | Crystal structure of Fab4201 raised against Human Erythrocyte Anion Exchanger 1 | MUS MUSCULUS | mus musculus | mus musculus | null | Arakawa, T., Kobayashi-Yugiri, T., Alguel, Y., Weyand, S., Iwanari, H., Hatae, H., Iwata, M., Abe, Y., Hino, T., Ikeda-Suno, C., Kuma, H., Kang, D., Murata, T., Hamakubo, T., Cameron, A., Kobayashi, T., Hamasaki, N., Iwata, S. | 2.5 | X-RAY DIFFRACTION | 0.2552 | 0.2128 | false | false | IGHV8 | IGKV3 | Kappa | null | null | null | null | null |
7e7y | A | B | 0 | R | protein | null | spike protein s1 | VIRAL PROTEIN | 02/28/21 | Crystal structure of the SARS-CoV-2 S RBD in complex with BD-623 Fab | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Wei, Y., Xiao, J. | 2.41 | X-RAY DIFFRACTION | 0.241 | 0.197 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
7e3k | H | L | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 02/09/21 | Ultrapotent SARS-CoV-2 neutralizing antibodies with protective efficacy against newly emerged mutational variants | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Guo, H., Li, T., Liu, F., Gao, Y., Ji, X., Yang, H. | 3.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7raj | H | L | 0 | A | peptide | null | asn-pro-asp-pro-asn-ala-asn-pro-asn-val-asp-pro-asn-ala-asn | IMMUNE SYSTEM | 07/01/21 | Structure of PfCSP peptide 21 with antibody iGL-CIS43.D3 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | plasmodium falciparum | Tripathi, P., Kwong, P.D. | 3.0 | X-RAY DIFFRACTION | 0.317 | 0.253 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
7lss | H | L | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 02/18/21 | Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-7 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Rapp, M., Shapiro, L. | 3.72 | ELECTRON MICROSCOPY | null | null | false | true | IGHV2 | IGLV2 | Lambda | null | null | null | null | null |
5wnb | I | M | 0 | A | peptide | null | major surface glycoprotein g | VIRAL PROTEIN/IMMUNE SYSTEM | 07/31/17 | Structure of antibody 3D3 bound to the linear epitope of RSV G | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human respiratory syncytial virus a | Fedechkin, S.O., George, N.L., Wolff, J.T., Kauvar, L.M., DuBois, R.M. | 2.4 | X-RAY DIFFRACTION | 0.268 | 0.224 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
2d03 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/23/05 | Crystal structure of the G91S mutant of the NNA7 Fab | MUS MUSCULUS | mus musculus | mus musculus | null | Xie, K., Song, S.C., Spitalnik, S.L., Wedekind, J.E. | 1.97 | X-RAY DIFFRACTION | 0.262 | 0.218 | false | true | IGHV2 | IGKV1 | Kappa | null | null | null | null | null |
4ut9 | K | O | 0 | C | protein | null | envelope glycoprotein e | VIRAL PROTEIN | 07/18/14 | Crystal structure of dengue 2 virus envelope glycoprotein dimer in complex with the ScFv fragment of the broadly neutralizing human antibody EDE1 C10 | HOMO SAPIENS; DENGUE VIRUS 2 | homo sapiens | homo sapiens | dengue virus 2 | ROUVINSKI, A., GUARDADO-CALVO, P., BARBA-SPAETH, G., DUQUERROY, S., VANEY, M.C., REY, F.A. | 3.2 | X-RAY DIFFRACTION | 0.2487 | 0.1975 | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
5kov | Q | q | 0 | N | protein | null | capsid polyprotein vp90 | VIRAL PROTEIN | 07/01/16 | Crystal structure of the human astrovirus 2 capsid protein spike in complex with a single chain variable fragment of an astrovirus neutralizing antibody at 3.24-A resolution | HUMAN ASTROVIRUS-2; MUS MUSCULUS | mus musculus | null | human astrovirus-2 | Bogdanoff, W.A., DuBois, R.M. | 3.245 | X-RAY DIFFRACTION | 0.288 | 0.241 | true | true | unknown | unknown | unknown | 0 | -11.907338 | SPR | null | TBD |
7fae | e | d | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 07/06/21 | S protein of SARS-CoV-2 in complex bound with P36-5D2(state2) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhang, L., Wang, X., Shan, S., Zhang, S. | 3.65 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7wkx | B | D | 0 | E | protein | null | interleukin-17a | CYTOKINE | 01/12/22 | IL-17A in complex with the humanized antibody HB0017 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Xu, J., Zhu, X., He, Y. | 2.81 | X-RAY DIFFRACTION | 0.254 | 0.206 | false | true | IGHV7 | IGKV2 | Kappa | null | null | null | null | null |
7ll2 | H | L | 0 | A | protein | null | envelope glycoprotein gp120 | IMMUNE SYSTEM/VIRAL PROTEIN | 02/03/21 | Cryo-EM structure of BG505 DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody VRC33.01 Fab | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Manne, K., Acharya, P. | 3.73 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
4kk5 | C | D | 0 | A | protein | null | h(+)/cl(-) exchange transporter clca | TRANSPORT PROTEIN | 05/05/13 | Structure of the CLC-ec1 deltaNC construct in 20mM fluoride and 20mM bromide | ESCHERICHIA COLI; MUS MUSCULUS | mus musculus | mus musculus | escherichia coli | Lim, H.-H., Miller, C. | 3.171 | X-RAY DIFFRACTION | 0.271 | 0.232 | false | true | IGHV4 | IGKV4 | Kappa | null | null | null | null | null |
7myz | H | L | 0 | C | protein | null | fusion protein of leukocyte surface antigen cd47 an solublecytochrome b562 | MEMBRANE PROTEIN | 05/22/21 | Structure of the full length 5-TM receptor CD47 bound to Fab B6H12 | HOMO SAPIENS; ESCHERICHIA COLI | homo sapiens | homo sapiens | homo sapiens, escherichia coli | Fenalti, G., Villanueva, N. | 3.4 | X-RAY DIFFRACTION | 0.277 | 0.253 | false | true | IGHV5 | IGKV5 | Kappa | null | null | null | null | null |
3ri5 | J | M | 0 | E | protein | null | avermectin-sensitive glutamate-gated chloride channel gluclalpha | transport protein/immune system | 04/12/11 | C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab, ivermectin and picrotoxin | CAENORHABDITIS ELEGANS; MUS MUSCULUS | mus musculus | mus musculus | caenorhabditis elegans | Hibbs, R.E., Gouaux, E. | 3.4 | X-RAY DIFFRACTION | 0.248 | 0.232 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
7a0x | E | F | 0 | B | protein | null | na(+)/h(+) antiporter nhaa | MEMBRANE PROTEIN | 08/11/20 | Structure of dimeric sodium proton antiporter NhaA, at pH 6.0, crystallized with chimeric Fab antibodies | SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720); GALLUS GALLUS; HOMO SAPIENS | gallus gallus, homo sapiens | gallus gallus, homo sapiens | salmonella typhimurium (strain lt2 / sgsc1412 /atcc 700720) | Fippel, A., Lentes, C.J., Mir, S.H., Wirth, C., Hunte, C. | 2.37 | X-RAY DIFFRACTION | 0.241 | 0.205 | false | true | unknown | unknown | unknown | null | null | null | null | null |
4xml | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 01/14/15 | Crystal structure of Fab of HIV-1 gp120 V3-specific human monoclonal antibody 2424 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Pan, R., Kong, X.-P. | 2.68 | X-RAY DIFFRACTION | 0.285 | 0.200 | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
6qna | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 02/10/19 | Structure of bovine anti-RSV hybrid Fab B13HC-B4LC | BOS TAURUS | bos taurus | bos taurus | null | Ren, J., Nettleship, J.E., Harris, G., Mwangi, W., Rhaman, N., Grant, C., Kotecha, A., Fry, E., Charleston, B., Stuart, D.I., Hammond, J., Owens, R.J. | 2.62 | X-RAY DIFFRACTION | 0.250 | 0.220 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
6um7 | B | C | 0 | I | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN/immune system | 10/09/19 | Cryo-EM structure of vaccine-elicited HIV-1 neutralizing antibody DH270.mu1 in complex with CH848 10.17DT Env | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Henderson, R.C., Saunders, K., Haynes, B.F. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
7bua | G | I | 0 | B | protein | null | genome polyprotein | VIRUS | 05/13/20 | Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0 | HOMO SAPIENS; ZIKA VIRUS ZIKV/H. SAPIENS/FRENCHPOLYNESIA/10087PF/2013 | homo sapiens | homo sapiens | zika virus zikv/h.sapiens/frenchpolynesia/10087pf/2013 | Zhang, S., Chew, S.V., Lim, X.N., Ng, T.S., Kostyuchenko, V.A., Lok, S.M. | 4.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5w1g | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/03/17 | CR1-07 unliganded Fab | HOMO SAPIENS | homo sapiens | homo sapiens | null | Raymond, D.D., Clark, L.E., Abraham, J. | 2.0 | X-RAY DIFFRACTION | 0.282 | 0.231 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
6k64 | null | B | 0 | H | protein | null | protein a | STRUCTURAL PROTEIN | 06/01/19 | Application of anti-helix antibodies in protein structure determination (8188-3LRH) | HOMO SAPIENS; STAPHYLOCOCCUS AUREUS SUBSP. AUREUS | null | homo sapiens | staphylococcus aureus subsp. aureus | Lee, J.O., Jin, M.S., Kim, J.W., Kim, S., Lee, H., Cho, G.Y. | 1.933 | X-RAY DIFFRACTION | 0.207 | 0.171 | false | true | null | IGLV1 | Lambda | null | null | null | null | null |
6was | A | B | 0 | G | protein | null | 1fd6 16055 v1v2 scaffold | IMMUNE SYSTEM | 03/26/20 | Structure of D19.PA8 Fab in complex with 1FD6 16055 V1V2 scaffold | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Singh, S., Liban, T.J., Pancera, M. | 1.904 | X-RAY DIFFRACTION | 0.228 | 0.194 | false | true | IGHV3 | IGLV6 | Lambda | null | null | null | null | null |
7ljc | N | null | 0 | A | B | G | protein | protein | protein | NA | NA | NA | engineered human gs alpha subunit | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2 | SIGNALING PROTEIN | 01/28/21 | Allosteric modulator LY3154207 binding to SKF-81297-bound dopamine receptor 1 in complex with miniGs protein | HOMO SAPIENS; RATTUS NORVEGICUS; BOS TAURUS; LAMA GLAMA | lama glama | null | homo sapiens | rattus norvegicus | bos taurus | Zhuang, Y., Krumm, B., Zhang, H., Zhou, X.E., Wang, Y., Guo, J., Huang, X.-P., Liu, Y., Wang, L., Cheng, X., Jiang, Y., Jiang, H., Melcher, K., Zhang, C., Yi, W., Roth, B.L., Zhang, Y., Xu, H.E. | 3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6n1w | q | r | 0 | 2 | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN | 11/12/18 | Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody DFPH-a.15 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | HUMAN IMMUNODEFICIENCY VIRUS 1; MACACA MULATTA; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Kwong, P.D. | 4.2 | ELECTRON MICROSCOPY | null | null | false | false | unknown | unknown | unknown | null | null | null | null | null |
2bmk | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 03/14/05 | Fab fragment of PLP-dependent catalytic antibody 15A9 in complex with phosphopyridoxyl-D-alanine | MUS MUSCULUS | mus musculus | mus musculus | null | Pimpaneau, B.Golinelli-, Christen, P. | 2.3 | X-RAY DIFFRACTION | 0.2725 | 0.2097 | false | true | IGHV7 | IGKV4 | Kappa | 0.000002 | -7.666764 | Unknown | null | TBD |
2kqn | null | A | 15 | null | null | null | null | IMMUNE SYSTEM | 11/11/09 | Solution structure of the AL-09 H87Y immunoglobulin light chain variable domain | HOMO SAPIENS | null | homo sapiens | null | Volkman, B.F., Peterson, F.C., Ramirez-Alvarado, M., Baden, E.M. | NOT | SOLUTION NMR | null | null | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
4ffv | D | C | 0 | B | protein | null | dipeptidyl peptidase 4 | HYDROLASE/Immune System, INHIBITOR | 06/01/12 | Crystal Structure of Dipeptidyl Peptidase IV (DPP4, DPP-IV, CD26) in Complex with 11A19 Fab | RATTUS NORVEGICUS; MUS MUSCULUS | mus musculus | mus musculus | rattus norvegicus | Wang, Z., Sudom, A., Walker, N.P., Min, X. | 2.4 | X-RAY DIFFRACTION | 0.301 | 0.271 | false | false | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
6x3w | J | I | 0 | B | protein | null | gamma-aminobutyric acid receptor subunit alpha-1 | MEMBRANE PROTEIN | 05/21/20 | Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus phenobarbital | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Kim, J.J., Gharpure, A., Teng, J., Zhuang, Y., Howard, R.J., Zhu, S., Noviello, C.M., Walsh, R.M., Lindahl, E., Hibbs, R.E. | 3.3 | ELECTRON MICROSCOPY | null | null | false | false | IGHV14 | IGKV6 | Kappa | null | null | null | null | null |
7klw | C | null | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN | 11/01/20 | Crystal structure of synthetic nanobody complexes with SARS-CoV-2 receptor binding domain | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; SYNTHETIC CONSTRUCT | synthetic construct | null | severe acute respiratory syndrome coronavirus2 | Jiang, J., Ahmad, J., Natarajan, K., Boyd, L.F., Margulies, D.H. | 2.6 | X-RAY DIFFRACTION | 0.255 | 0.206 | false | true | IGHV1 | null | null | null | null | null | null | null |
6nb6 | H | L | 0 | C | A | protein | protein | NA | NA | spike glycoprotein | spike glycoprotein | VIRUS | 12/06/18 | SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1) | SARS CORONAVIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | sars coronavirus | sars coronavirus | Walls, A.C., Xiong, X., Park, Y.J., Tortorici, M.A., Snijder, S., Quispe, J., Cameroni, E., Gopal, R., Mian, D., Lanzavecchia, A., Zambon, M., Rey, F.A., Corti, D., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 4.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
7s0e | H | L | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 08/30/21 | Structure of the SARS-CoV-2 S1 subunit in complex with antibody N-612-004 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Barnes, C.O., Bjorkman, P.J. | 4.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6id4 | C | D | 0 | E | F | protein | protein | NA | NA | mhc class i antigen | beta-2-microglobulin | IMMUNE SYSTEM | 09/08/18 | Defining the structural basis for human alloantibody binding to human leukocyte antigen allele HLA-A*11:01 | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | homo sapiens | Lescar, J., Wong, Y.H., Liew, C.W., Gu, Y., MacAry, P.A. | 2.4 | X-RAY DIFFRACTION | 0.246 | 0.197 | false | true | IGHV1 | IGLV5 | Lambda | null | null | null | null | null |
6oca | C | null | 0 | A | protein | null | ricin a chain | TOXIN | 04/01/20 | Ricin A chain bound to VHH antibody V2G10 | RICINUS COMMUNIS; VICUGNA PACOS | vicugna pacos | null | ricinus communis | Rudolph, M.J. | 2.113 | X-RAY DIFFRACTION | 0.247 | 0.213 | false | true | IGHV1 | null | null | null | null | null | null | null |
2a1w | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 06/21/05 | Anti-cocaine antibody 7.5.21, crystal form I | MUS MUSCULUS | mus musculus | mus musculus | null | Pozharski, E., Hewagama, A., Shanafelt, A., Ringe, D., Petsko, G.A. | 2.7 | X-RAY DIFFRACTION | 0.247 | 0.185 | false | false | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
2a6d | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/02/05 | Crystal structure analysis of the anti-arsonate germline antibody 36-65 in complex with a phage display derived dodecapeptide RLLIADPPSPRE | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Sethi, D.K., Agarwal, A., Manivel, V., Rao, K.V., Salunke, D.M. | 2.9 | X-RAY DIFFRACTION | 0.264 | 0.230 | false | false | IGHV1 | IGKV10 | Kappa | 0 | -9.309477 | Unknown | null | TBD |
7cho | B | C | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN | 07/06/20 | Crystal structure of SARS-CoV-2 antibody P5A-1D2 with RBD | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Wang, X., Zhang, L., Ge, J., Wang, R., Zhang, Q. | 2.561 | X-RAY DIFFRACTION | 0.247 | 0.202 | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
7q0g | H | L | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN | 10/14/21 | Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-49 and FI-3A Fabs | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, D., Ren, J., Stuart, D.I. | 1.82 | X-RAY DIFFRACTION | 0.224 | 0.192 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
5chn | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/10/15 | Fab fragments of chikungunya virus neutralizing human monoclonal antibody 5M16 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Long, F., Crowe, J.E., Rossmann, M.G. | 2.047 | X-RAY DIFFRACTION | 0.218 | 0.172 | false | false | IGHV1 | IGKV2 | Kappa | null | null | null | null | null |
7jwp | A | B | 0 | Q | peptide | null | il-18 peptide | IMMUNE SYSTEM | 08/26/20 | Fab CJ11 in complex IL-18 peptide liberated by Caspase cleavage | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Payandeh, J., Ho, H. | 3.0 | X-RAY DIFFRACTION | 0.260 | 0.235 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6lz4 | A | B | 0 | C | peptide | null | map peptide | IMMUNE SYSTEM | 05/20/20 | Crystal structure of PMab-1 Fv-clasp fragment with its antigen peptide | RATTUS NORVEGICUS; SYNTHETIC CONSTRUCT | rattus norvegicus | rattus norvegicus | mus musculus | Arimori, T., Takagi, J. | 2.49 | X-RAY DIFFRACTION | 0.269 | 0.245 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7dcc | A | F | 0 | K | protein | null | spike glycoprotein | VIRAL PROTEIN | 10/24/20 | S-3C1-F3b structure, all the three RBDs are in the up conformation and each of them associates with a 3C1 Fab | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; MUS MUSCULUS | mus musculus | mus musculus | severe acute respiratory syndrome coronavirus2 | Cong, Y., Liu, C.X. | 4.3 | ELECTRON MICROSCOPY | null | null | false | false | IGHV3 | IGKV6 | Kappa | null | null | null | null | null |
3rhw | J | M | 0 | E | protein | null | avermectin-sensitive glutamate-gated chloride channel gluclalpha | transport protein/immune system | 04/12/11 | C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab and ivermectin | CAENORHABDITIS ELEGANS; MUS MUSCULUS | mus musculus | mus musculus | caenorhabditis elegans | Hibbs, R.E., Gouaux, E. | 3.26 | X-RAY DIFFRACTION | 0.270 | 0.239 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
6umh | h | l | 0 | null | null | null | null | IMMUNE SYSTEM | 10/09/19 | Crystal structure of erenumab Fab-a | HOMO SAPIENS | homo sapiens | homo sapiens | null | Mohr, C. | 2.15 | X-RAY DIFFRACTION | 0.224 | 0.185 | false | false | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
6uj9 | H | L | 0 | A | C | protein | peptide | NA | NA | hla class i histocompatibility antigen, b-7 alpha chain | isocitrate dehydrogenase [nadp], mitochondrial | IMMUNE SYSTEM | 10/02/19 | Crystal structure of HLA-B*07:02 with R140Q mutant IDH2 peptide in complex with Fab | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | homo sapiens | Miller, M.S., Thirawatananond, P., Aytenfisu, T.Y., Wright, K., Gabelli, S.B. | 2.9 | X-RAY DIFFRACTION | 0.287 | 0.214 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4m1c | C | D | 0 | A | protein | null | insulin-degrading enzyme | HYDROLASE | 08/02/13 | Crystal Structure Analysis of Fab-Bound Human Insulin Degrading Enzyme (IDE) in Complex with Amyloid-Beta (1-40) | HOMO SAPIENS; SYNTHETIC CONSTRUCT | synthetic construct | synthetic construct | homo sapiens | McCord, L.M., Liang, W., Farcasanu, M., Scherpelz, K., Meredith, S.C., Koide, S., Tang, W.J. | 3.5007 | X-RAY DIFFRACTION | 0.270 | 0.228 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7tcc | H | L | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN/Immune System | 12/23/21 | Cryo-EM structure of SARS-CoV-2 Omicron spike in complex with antibodies A19-46.1 and B1-182.1 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Zhou, T., Kwong, P.D. | 3.86 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV8 | Lambda | null | null | null | null | null |
2w0l | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 08/19/08 | CRYSTAL STRUCTURE OF THE MUTANT H8P FROM THE RECOMBINANT VARIABLE DOMAIN 6JAL2 | HOMO SAPIENS | null | homo sapiens | null | RUDINO-PINERA, E., GONZALEZRUBIO-GARRIDO, P., HORJALES, E. | 2.2 | X-RAY DIFFRACTION | 0.245 | 0.206 | false | false | null | IGLV6 | Lambda | null | null | null | null | null |
5cd3 | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 07/02/15 | Structure of immature VRC01-class antibody DRVIA7 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Kong, L., Wilson, I.A. | 2.9 | X-RAY DIFFRACTION | 0.284 | 0.234 | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
5myx | B | A | 0 | E | peptide | null | pyroglutamate-abeta pe3-18 | IMMUNE SYSTEM | 01/30/17 | Structure of Pyroglutamate-Abeta-specific Fab c#24 in complex with human Abeta-pE3-18 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Parthier, C., Piechotta, A., Stubbs, M.T. | 1.492 | X-RAY DIFFRACTION | 0.213 | 0.181 | false | true | IGHV1 | IGKV1 | Kappa | 0 | -11.138111 | Unknown | null | TBD |
4ogy | H | L | 0 | A | protein | null | plasma kallikrein | HYDROLASE/ANTIBODY | 01/16/14 | Crystal structure of Fab DX-2930 in complex with human plasma kallikrein at 2.1 Angstrom resolution | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Edwards, T.E., Clifton, M.C., Abendroth, J., Nixon, A., Ladner, R. | 2.1 | X-RAY DIFFRACTION | 0.221 | 0.183 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7ew3 | S | s | 0 | A | C | B | protein | protein | protein | NA | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 05/24/21 | Cryo-EM structure of S1P-bound Sphingosine 1-phosphate receptor 3 in complex with Gi protein | HOMO SAPIENS | homo sapiens | null | homo sapiens | homo sapiens | homo sapiens | Zhao, C., Wang, W., Wang, H.L., Shao, Z.H. | 3.1 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
7p79 | D | null | 0 | E | protein | null | spike glycoprotein | VIRAL PROTEIN | 07/19/21 | SARS-CoV-2 spike protein in complex with sybodyb#15 in a 1up/1up-out/1down conformation. | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; SYNTHETIC CONSTRUCT | synthetic construct | null | severe acute respiratory syndrome coronavirus2 | Walter, J.D., Hutter, C.A.J., Garaeva, A.A., Scherer, M., Zimmermann, I., Wyss, M., Rheinberger, J., Ruedin, Y., Earp, J.C., Egloff, P., Sorgenfrei, M., Huerlimann, L.M., Gonda, I., Meier, G., Remm, S., Thavarasah, S., Zimmer, G., Slotboom, D.J., Paulino, C., Plattet, P., Seeger, M.A. | 4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6m47 | H | L | 0 | A | protein | null | sodium-dependent dopamine transporter | MEMBRANE PROTEIN | 03/05/20 | X-ray structure of a Drosophila dopamine transporter with NET-like mutations (D121G/S426M/F471L) in tramadol bound form | DROSOPHILA MELANOGASTER; MUS MUSCULUS | mus musculus | mus musculus | drosophila melanogaster | Shabareesh, P., Mallela, A.K., Joseph, D., Penmatsa, A. | 3.252 | X-RAY DIFFRACTION | 0.275 | 0.241 | false | true | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
3cfk | D | C | 0 | null | null | null | null | IMMUNE SYSTEM | 03/04/08 | Crystal structure of catalytic elimination antibody 34E4, triclinic crystal form | MUS MUSCULUS, HOMO SAPIENS | mus musculus, homo sapiens | mus musculus, homo sapiens | null | Debler, E.W., Wilson, I.A. | 2.6 | X-RAY DIFFRACTION | 0.244 | 0.221 | false | true | IGHV4 | IGLV1 | Lambda | null | null | null | null | null |
3mug | L | K | 0 | I | carbohydrate | NAG | polysaccharide | IMMUNE SYSTEM | 05/03/10 | Crystal structure of human Fab PG16, a broadly reactive and potent HIV-1 neutralizing antibody | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Pejchal, R., Walker, L.M., Burton, D.R., Wilson, I.A. | 2.49 | X-RAY DIFFRACTION | 0.248 | 0.207 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
7rlz | D | C | 0 | R | peptide | null | peptide from circumsporozoite protein variant vk210 | ANTIMICROBIAL PROTEIN | 07/26/21 | Antibody 2F2 in complex with P. vivax CSP peptide GDRAAGQPAGNGAGGQAA | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | plasmodium vivax | Kucharska, I., Julien, J.P. | 2.27 | X-RAY DIFFRACTION | 0.239 | 0.191 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
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