pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2hrp | H | L | 0 | P | peptide | null | hiv-1 protease peptide | COMPLEX (IMMUNOGLOBULIN/PEPTIDE) | 12/27/96 | ANTIGEN-ANTIBODY COMPLEX | MUS MUSCULUS | mus musculus | mus musculus | null | Lescar, J., Bentley, G.A. | 2.2 | X-RAY DIFFRACTION | 0.289 | 0.198 | false | false | IGHV5 | IGKV3 | Kappa | 0 | -11.32 | SPR | null | 9150407 |
2xxc | B | null | 0 | null | null | null | null | IMMUNE SYSTEM | 11/10/10 | Crystal structure of a camelid VHH raised against the HIV-1 capsid protein C-terminal domain. | VICUGNA PACOS | vicugna pacos | null | null | Igonet, S., Vaney, M.-C., Bartonova, V., Helma, J., Rothbauer, U., Leonhardt, H., Stura, E., Krausslich, H.-G., Rey, F.A. | 1.67 | X-RAY DIFFRACTION | 0.2101 | 0.1800 | false | true | IGHV1 | null | null | null | null | null | null | null |
4nwu | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 12/06/13 | Crystal structure of APE1551, an anti-human NGF Fab with a nine amino acid insertion in CDR H1 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Verdino, P., Stanfield, R.L., Wilson, I.A. | 1.602 | X-RAY DIFFRACTION | 0.198 | 0.166 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
2qtj | D | N | 1 | null | null | null | null | IMMUNE SYSTEM | 08/02/07 | Solution structure of human dimeric immunoglobulin A | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Furtado, P.B., Almogren, A., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6oc8 | D | null | 0 | null | null | null | null | IMMUNE SYSTEM | 03/22/19 | Crystal structure of a VHH against the capsid protein from BLV | LAMA GLAMA | lama glama | null | null | Carrion, F., Larrieux, N., Trajtenberg, F., Buschiazzo, A. | 2.109 | X-RAY DIFFRACTION | 0.241 | 0.205 | false | true | IGHV1 | null | null | null | null | null | null | null |
2cd0 | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 03/08/99 | STRUCTURE OF HUMAN LAMBDA-6 LIGHT CHAIN DIMER WIL | HOMO SAPIENS | null | homo sapiens | null | Pokkuluri, P.R., Solomon, A., Weiss, D.T., Stevens, F.J., Schiffer, M. | 1.8 | X-RAY DIFFRACTION | 0.351 | 0.289 | false | true | null | IGLV6 | Lambda | null | null | null | null | null |
3tt1 | H | L | 0 | B | protein | null | leucine transporter leut | TRANSPORT PROTEIN | 09/13/11 | Crystal Structure of LeuT in the outward-open conformation in complex with Fab | AQUIFEX AEOLICUS; MUS MUSCULUS | mus musculus | mus musculus | aquifex aeolicus | Krishnamurthy, H., Gouaux, E. | 3.099 | X-RAY DIFFRACTION | 0.240 | 0.219 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
5hm1 | B | null | 0 | E | peptide | null | gp41 | IMMUNE SYSTEM | 01/15/16 | Llama VHH 2E7 in complex with gp41 | LAMA GLAMA; SYNTHETIC CONSTRUCT | lama glama | null | hiv-1 m | Hock, M., Caillat, C., Haffke, M., Weissenhorn, W. | 2.962 | X-RAY DIFFRACTION | 0.249 | 0.194 | false | true | IGHV1 | null | null | null | null | null | null | null |
4m6m | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 08/09/13 | Crystal structure of anti-IL-23 antibody CNTO1959 at pH 9.5 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Teplyakov, A., Obmolova, G., Gilliland, G.L. | 2.0 | X-RAY DIFFRACTION | 0.221 | 0.184 | false | true | IGHV5 | IGLV1 | Lambda | null | null | null | null | null |
1kno | B | A | 0 | B | Hapten | PNP | METHYL-PHOSPHONIC ACID MONO-(4-NITRO-PHENYL) ESTER | CATALYTIC ANTIBODY | 09/11/95 | CRYSTAL STRUCTURE OF THE COMPLEX OF A CATALYTIC ANTIBODY FAB WITH A TRANSITION STATE ANALOG: STRUCTURAL SIMILARITIES IN ESTERASE-LIKE ABZYMES | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Charbonnier, J.-B., Gigant, B., Knossow, M. | 3.2 | X-RAY DIFFRACTION | 0.272 | 0.200 | false | false | IGHV5 | IGKV9 | Kappa | null | null | null | null | null |
1igj | B | A | 0 | B | Hapten | DGX | DIGOXIN | IMMUNOGLOBULIN | 02/19/93 | 26-10 FAB:DIGOXIN COMPLEX-AFFINITY AND SPECIFICITY DUE TO SURFACE COMPLEMENTARITY | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Jeffrey, P.D., Sheriff, S. | 2.5 | X-RAY DIFFRACTION | unknown | 0.176 | false | true | IGHV1 | IGKV1 | Kappa | 0 | -13.91 | Other | 20 | 8234291 |
1efq | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 02/09/00 | Q38D mutant of LEN | HOMO SAPIENS | null | homo sapiens | null | Pokkuluri, P.R., Cai, X., Gu, M., Stevens, F.J., Schiffer, M. | 1.6 | X-RAY DIFFRACTION | 0.288 | 0.230 | false | true | null | IGKV4 | Kappa | null | null | null | null | null |
7t0i | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 11/29/21 | Crystal structure of S25-39 Fab Unliganded 3 | MUS MUSCULUS | mus musculus | mus musculus | null | Legg, M.S.G., Blackler, R.J., Evans, S.V. | 2.1 | X-RAY DIFFRACTION | 0.225 | 0.180 | false | true | IGHV7 | IGKV8 | Kappa | null | null | null | null | null |
3v4p | M | N | 0 | D | C | protein | protein | NA | NA | integrin beta-7 | integrin alpha-4 | CELL ADHESION | 12/15/11 | crystal structure of a4b7 headpiece complexed with Fab ACT-1 | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | homo sapiens | Yu, Y., Zhu, J., Springer, T.A. | 3.15 | X-RAY DIFFRACTION | 0.251 | 0.220 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6v6w | A | B | 0 | K | protein | null | envelope glycoprotein gp41 | VIRAL PROTEIN/IMMUNE SYSTEM | 12/06/19 | Crystal structure of antibody 438-B11 DSS mutant (Cys98A-100aA) in complex with an uncleaved prefusion optimized (UFO) soluble BG505 trimer and Fab 35O22 | HUMAN IMMUNODEFICIENCY VIRUS 1 | human immunodeficiency virus 1 | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Kumar, S., Wilson, I.A. | 6.5 | X-RAY DIFFRACTION | 0.355 | 0.309 | false | true | unknown | unknown | unknown | null | null | null | null | null |
4nja | H | L | 0 | H | Hapten | 2M9 | 8-methoxypyrene-1,3,6-trisulfonic acid | IMMUNE SYSTEM | 11/08/13 | Crystal structure of Fab 6C8 in complex with MPTS | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Stanfield, R.L., Romesberg, F.E., Zimmermann, J., Wilson, I.A. | 2.204 | X-RAY DIFFRACTION | 0.265 | 0.216 | false | false | IGHV1 | IGKV3 | Kappa | 0.000001 | -8.48812 | Unknown | null | TBD |
4jg1 | H | L | 0 | P | peptide | null | phosphopeptide | immune system | 02/28/13 | Structure of phosphoserine/threonine (pSTAb) scaffold bound to pThr peptide | ESCHERICHIA COLI; SYNTHETIC CONSTRUCT | null | null | null | Koerber, J.T., Thomsen, N.D., Hannigan, B.T., Degrado, W.F., Wells, J.A. | 1.55 | X-RAY DIFFRACTION | 0.174 | 0.151 | false | true | IGHV3 | IGKV3 | Kappa | 0 | -9.051094 | Unknown | null | TBD |
1mcr | null | B | 0 | P | peptide | null | peptide n-acetyl-l-his-d-pro-oh | IMMUNOGLOBULIN | 02/25/93 | PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS | HOMO SAPIENS | null | homo sapiens | null | Edmundson, A.B., Harris, D.L., Fan, Z.-C., Guddat, L.W. | 2.7 | X-RAY DIFFRACTION | unknown | unknown | false | true | null | IGLV2 | Lambda | null | null | null | null | null |
5m2i | H | null | 0 | A | protein | null | tumor necrosis factor | CYTOKINE | 10/13/16 | Structure of human Tumor Necrosis Factor (TNF) in complex with the Llama VHH1 | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Cambillau, C., Spinelli, S., Desmyter, A., de Haard, H. | 2.15 | X-RAY DIFFRACTION | 0.238 | 0.207 | false | true | IGHV1 | null | null | 0 | -12.643277 | SPR | null | TBD |
1g9e | A | null | 14 | null | null | null | null | IMMUNE SYSTEM | 11/23/00 | SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA | LAMA GLAMA | lama glama | null | null | Renisio, J.-G., Perez, J., Czisch, M., Guenneugues, M., Bornet, O., Frenken, L., Cambillau, C., Darbon, H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7dkj | G | H | 0 | E | protein | null | hemagglutinin | VIRAL PROTEIN | 11/24/20 | Hemagglutinin Influenza A virus (A/Okuda/1957(H2N2) bound with a neutralizing antibody | INFLUENZA A VIRUS (A/OKUDA/1957(H2N2)); MUS MUSCULUS | mus musculus | mus musculus | influenza a virus (a/okuda/1957(h2n2)) | Kamada, K., Shirouzu, M. | 3.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV7 | IGKV12 | Kappa | null | null | null | null | null |
6ev1 | G | H | 0 | null | null | null | null | IMMUNE SYSTEM | 11/01/17 | Crystal structure of antibody against schizophyllan | MUS MUSCULUS | mus musculus | mus musculus | null | Sung, K.H., Josewski, J., Dubel, S., Blankenfeldt, W., Rau, U. | 3.043 | X-RAY DIFFRACTION | 0.238 | 0.186 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
7lu9 | p | o | 0 | P | carbohydrate | BMA | BETA-D-MANNOSE | VIRAL PROTEIN/IMMUNE SYSTEM | 02/21/21 | Cryo-EM structure of DH851.3 bound to HIV-1 CH505 Env | MACACA MULATTA; HUMAN IMMUNODEFICIENCY VIRUS 1 | macaca mulatta | macaca mulatta | null | Manne, K., Edwards, R.J., Acharya, P. | 5.6 | ELECTRON MICROSCOPY | null | null | false | false | IGHV2 | IGLV2 | Lambda | null | null | null | null | null |
6phb | B | A | 0 | E | protein | null | 25 kda ookinete surface antigen | IMMUNE SYSTEM | 06/25/19 | Pfs25 in complex with the human transmission blocking antibody 2530 | PLASMODIUM FALCIPARUM; HOMO SAPIENS | homo sapiens | homo sapiens | plasmodium falciparum | McLeod, B.R., Julien, J.P. | 2.0 | X-RAY DIFFRACTION | 0.209 | 0.177 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
5mtl | null | C | 0 | null | null | null | null | IMMUNE SYSTEM | 01/10/17 | Crystal structure of an amyloidogenic light chain | HOMO SAPIENS | null | homo sapiens | null | Oberti, L., Rognoni, P., Russo, R., Bacarizo, J., Bolognesi, M., Ricagno, S. | 2.45 | X-RAY DIFFRACTION | 0.277 | 0.234 | false | true | null | IGLV1 | Lambda | null | null | null | null | null |
3tcl | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 08/09/11 | Crystal Structure of HIV-1 Neutralizing Antibody CH04 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Louder, R.K., McLellan, J.S., Pancera, M., Yang, Y., Zhang, B., Bonsignori, M., Kwong, P.D. | 1.906 | X-RAY DIFFRACTION | 0.238 | 0.196 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
2kh2 | B | b | 48 | A | protein | null | interleukin-1 beta | Cytokine/IMMUNE SYSTEM | 03/23/09 | Solution structure of a scFv-IL-1B complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Wilkinson, I.C., Hall, C.J., Veverka, V., Muskett, F.W., Stephens, P.E., Taylor, R.J., Henry, A.J., Carr, M.D. | NOT | SOLUTION NMR | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
5tgb | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 09/27/16 | Structure of chimeric 02-CB Fab, a VRC01-like germline antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Pancera, M. | 2.741 | X-RAY DIFFRACTION | 0.286 | 0.249 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4xxd | E | D | 0 | F | peptide | null | amyloid-beta fragment | IMMUNE SYSTEM | 01/30/15 | Crystal Structure of mid-region amyloid beta capture by solanezumab | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | homo sapiens | Hermans, S.J., Crespi, G.A.N., Parker, M.W., Miles, L.A. | 2.41 | X-RAY DIFFRACTION | 0.290 | 0.249 | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
4hzl | H | L | 0 | E | peptide | null | e2 envelop protein | IMMUNE SYSTEM | 11/15/12 | Neutralizing antibody mAb#8 in complex with the Epitope II of HCV E2 envelope protein | MUS MUSCULUS; RECOMBINANT HEPATITIS C VIRUS H77(5'UTR-NS2)/JFH1_V787A,Q1247L | mus musculus | mus musculus | recombinant hepatitis c virus h77(5'utr-ns2)/jfh1_v787a,q1247l | Deng, L., Zhang, P. | 2.85 | X-RAY DIFFRACTION | 0.277 | 0.221 | false | false | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
6eti | D | C | 0 | B | protein | null | atp-binding cassette sub-family g member 2 | MEMBRANE PROTEIN | 10/26/17 | Structure of inhibitor-bound ABCG2 | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Jackson, S.M., Manolaridis, I., Kowal, J., Zechner, M., Altmann, K.H., Locher, K.P. | 3.1 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV13 | Kappa | null | null | null | null | null |
3pgf | H | L | 0 | A | protein | null | maltose-binding periplasmic protein | MALTODEXTRIN BINDING PROTEIN/DE NOVO PROTEIN | 11/01/10 | Crystal structure of maltose bound MBP with a conformationally specific synthetic antigen binder (sAB) | ESCHERICHIA COLI; HOMO SAPIENS | homo sapiens | homo sapiens | escherichia coli | Kossiakoff, A.A., Duguid, E.M., Sandstrom, A. | 2.1 | X-RAY DIFFRACTION | 0.227 | 0.177 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
1dl7 | H | L | 0 | L | Hapten | NCH | P-NITROPHENYL-PHOSPHOCHOLINE | IMMUNE SYSTEM | 12/08/99 | THE STRUCTURAL BASIS OF REPERTOIRE SHIFT IN AN IMMUNE RESPONSE TO PHOSPHOCHOLINE | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Schumacher, M., Brown, M. | 2.35 | X-RAY DIFFRACTION | 0.265 | 0.189 | false | true | IGHV2 | IGLV1 | Lambda | 0 | -8.860561 | Unknown | null | TBD |
3uze | B | b | 0 | D | protein | null | envelope protein | IMMUNE SYSTEM | 12/07/11 | Crystal structure of the dengue virus serotype 3 envelope protein domain III in complex with the variable domains of Mab 4E11 | MUS MUSCULUS; DENGUE VIRUS 3 | mus musculus | null | dengue virus 3 | Cockburn, J.J.B., Navarro Sanchez, M.E., Fretes, N., Urvoas, A., Staropoli, I., Kikuti, C.M., Coffey, L.L., Arenzana Seisdedos, F., Bedouelle, H., Rey, F.A. | 2.04 | X-RAY DIFFRACTION | 0.234 | 0.218 | true | true | unknown | unknown | unknown | 0 | -11.046162 | ELISA | null | TBD |
6ey0 | G | null | 0 | C | protein | null | t9ss component cytoplasmic membrane protein porm | PROTEIN TRANSPORT | 11/10/17 | N-terminal part (residues 30-212) of PorM with the llama naobody nb01 | PORPHYROMONAS GINGIVALIS; LAMA GLAMA | lama glama | null | porphyromonas gingivalis | Leone, P., Roche, J., Cambillau, C., Roussel, A. | 2.4 | X-RAY DIFFRACTION | 0.242 | 0.213 | false | true | IGHV1 | null | null | null | null | null | null | null |
7mhy | M | N | 0 | A | protein | null | protein-cysteine n-palmitoyltransferase hhat | TRANSFERASE/IMMUNE SYSTEM | 04/16/21 | Human Hedgehog acyltransferase (HHAT) in complex with palmitoyl-CoA and two Fab antibody fragments | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Long, S.B., Jiang, Y. | 2.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7kde | S | T | 0 | A | protein | null | hiv-1 envelope glycoprotein bg505 sosip.664 gp41 | VIRAL PROTEIN/Immune System | 10/08/20 | BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human gp120-gp41 interface antibody 8ANC195 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Barnes, C.O., Bjorkman, P.J. | 3.55 | ELECTRON MICROSCOPY | null | null | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
2kh2 | B | b | 39 | A | protein | null | interleukin-1 beta | Cytokine/IMMUNE SYSTEM | 03/23/09 | Solution structure of a scFv-IL-1B complex | HOMO SAPIENS; MUS MUSCULUS | mus musculus | null | homo sapiens | Wilkinson, I.C., Hall, C.J., Veverka, V., Muskett, F.W., Stephens, P.E., Taylor, R.J., Henry, A.J., Carr, M.D. | NOT | SOLUTION NMR | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
7q9f | H | L | 0 | A | protein | null | surface glycoprotein | Viral Protein/Immune System | 11/12/21 | Beta-50 fab in complex with SARS-CoV-2 beta-Spike glycoprotein | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Duyvesteyn, H.M.E., Ren, J., Stuart, D.I. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
6war | P | null | 0 | O | protein | null | spike protein | VIRAL PROTEIN/IMMUNE SYSTEM | 04/08/20 | Crystal structure of the MERS-CoV RBD bound by the neutralizing single-domain antibody MERS VHH-55 | MIDDLE EAST RESPIRATORY SYNDROME-RELATED CORONAVIRUS; LAMA GLAMA | lama glama | null | middle east respiratory syndrome-relatedcoronavirus | Wrapp, D., Torres, G.M., McLellan, J.S. | 3.4 | X-RAY DIFFRACTION | 0.268 | 0.214 | false | true | IGHV1 | null | null | null | null | null | null | null |
7b2p | D | null | 0 | B | A | protein | protein | NA | NA | complement c4 alpha chain | complement c4 beta chain | IMMUNE SYSTEM | 11/27/20 | Cryo-EM structure of complement C4b in complex with nanobody B5 | LAMA GLAMA; HOMO SAPIENS | lama glama | null | homo sapiens | homo sapiens | Oosterheert, W., De la O Becerra, K.I., Gros, P. | 3.43 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
5ip4 | B | null | 0 | D | protein | null | neuronal migration protein doublecortin | TRANSFERASE | 03/09/16 | X-RAY STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN DOUBLECORTIN | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Ruf, A., Benz, J., Burger, D., D'Arcy, B., Debulpaep, M., Di Lello, P., Fry, D., Huber, W., Kremer, T., Laeremans, T., Matile, H., Ross, A., Rudolph, M.G., Rufer, A.C., Sharma, A., Steinmetz, M.O., Steyaert, J., Schoch, G., Stihle, M., Thoma, R. | 1.81 | X-RAY DIFFRACTION | 0.246 | 0.194 | false | true | IGHV1 | null | null | 0 | -8.657252 | SPR | null | TBD |
6amj | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 08/09/17 | CAT192 Fab Wild Type | HOMO SAPIENS | homo sapiens | homo sapiens | null | Lord, D.M., Wei, R.R. | 2.49 | X-RAY DIFFRACTION | 0.262 | 0.206 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7arn | H | L | 0 | B | carbohydrate | NAG | N-ACETYL-D-GLUCOSAMINE | IMMUNE SYSTEM | 10/25/20 | Crystal Structure of the Fab Fragment of a Glycosylated Lymphoma Antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Pryce, R., Allen, J.D., Watanabe, Y., Crispin, M., Bowden, T.A. | 1.57 | X-RAY DIFFRACTION | 0.232 | 0.195 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7whk | G | null | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 12/30/21 | The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | null | severe acute respiratory syndrome coronavirus2 | Zhan, W.Q., Zhang, X., Chen, Z.G., Sun, L. | 3.01 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
1mrc | H | L | 0 | null | null | null | null | IMMUNOGLOBULIN | 06/13/94 | PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES | MUS MUSCULUS | mus musculus | mus musculus | null | Pokkuluri, P.R., Cygler, M. | 2.4 | X-RAY DIFFRACTION | unknown | 0.191 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5trp | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 10/27/16 | Crystal Structure of the Unliganded DH270 Cooperating Lineage Member DH272 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Fera, D., Harrison, S.C. | 2.692 | X-RAY DIFFRACTION | 0.256 | 0.211 | false | true | IGHV1 | IGKV2 | Kappa | null | null | null | null | null |
5k8a | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 05/27/16 | NIST FAB | MUS MUSCULUS | mus musculus | mus musculus | null | Gallagher, D.T., Galvin, C.V., Karageorgos, I., Marino, J.P. | 1.999 | X-RAY DIFFRACTION | 0.189 | 0.164 | false | true | IGHV2 | IGKV1 | Kappa | null | null | null | null | null |
6nb8 | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 12/06/18 | Crystal structure of anti- SARS-CoV human neutralizing S230 antibody Fab fragment | HOMO SAPIENS | homo sapiens | homo sapiens | null | Walls, A.J., Xiong, X., Park, Y.J., Tortorici, M.A., Snijder, J., Quispe, J., Cameroni, E., Gopal, R., Dai, M., Lanzavecchia, A., Zambon, M., Rey, F.A., Corti, D., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 1.5 | X-RAY DIFFRACTION | 0.167 | 0.129 | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
7lzp | F | null | 0 | D | protein | null | botulinum neurotoxin a light chain | ANTITOXIN | 03/10/21 | LC/A-JPU-B9-JPU-A11-JPU-G11 | CLOSTRIDIUM BOTULINUM; VICUGNA PACOS | vicugna pacos | null | clostridium botulinum | Lam, K., Jin, R. | 2.86 | X-RAY DIFFRACTION | 0.273 | 0.235 | false | true | IGHV1 | null | null | null | null | null | null | null |
1mak | null | A | 5 | null | null | null | null | IMMUNOGLOBULIN | 09/16/93 | SOLUTION STRUCTURE OF AN ISOLATED ANTIBODY VL DOMAIN | MUS MUSCULUS | null | mus musculus | null | Constantine, K.L., Friedrichs, M.S., Metzler, W.J., Wittekind, M., Hensley, P., Mueller, L. | NOT | SOLUTION NMR | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
4gms | I | M | 0 | C | protein | null | hemagglutinin ha1 chain | VIRAL PROTEIN/IMMUNE SYSTEM | 08/16/12 | Crystal structure of heterosubtypic Fab S139/1 in complex with influenza A H3 hemagglutinin | MUS MUSCULUS; INFLUENZA A VIRUS | mus musculus | mus musculus | influenza a virus | Lee, P.S., Ekiert, D.C., Wilson, I.A. | 2.95 | X-RAY DIFFRACTION | 0.233 | 0.207 | false | true | IGHV1 | IGKV6 | Kappa | 0 | -10.503274 | BLI | null | TBD |
7wuq | N | null | 0 | A | B | G | protein | protein | protein | NA | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2 | MEMBRANE PROTEIN | 02/09/22 | Tethered peptide activation mechanism of adhesion GPCRs ADGRG2 and ADGRG4 | HOMO SAPIENS; LAMA GLAMA; MUS MUSCULUS | lama glama | null | homo sapiens | homo sapiens | homo sapiens | He, Q.T., Guo, S.C., Xiao, P., Sun, J.P., Yu, X., Gou, L., Kong, L.L., Zhang, L. | 2.9 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6xkp | H | L | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/26/20 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CV07-270 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A. | 2.72 | X-RAY DIFFRACTION | 0.269 | 0.220 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
6b9j | H | L | 0 | X | protein | null | imv membrane protein | VIRAL PROTEIN/immune system | 10/10/17 | Structure of vaccinia virus D8 protein bound to human Fab vv138 | VACCINIA VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | vaccinia virus | Zajonc, D.M. | 2.9 | X-RAY DIFFRACTION | 0.269 | 0.241 | false | false | IGHV1 | IGKV3 | Kappa | 0 | -12.900199 | SPR | null | TBD |
6al1 | H | L | 0 | A | protein | null | pdz tandem fragment with pa tag insertion | SIGNALING PROTEIN | 09/05/18 | The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the residues 181 and 184 | AQUIFEX AEOLICUS VF5; RATTUS NORVEGICUS | rattus norvegicus | rattus norvegicus | aquifex aeolicus vf5 | Tamura, R., Oi, R., Kaneko, M.K., Kato, Y., Nogi, T. | 3.2 | X-RAY DIFFRACTION | 0.313 | 0.278 | false | true | IGHV5 | IGLV3 | Lambda | null | null | null | null | null |
5xp1 | null | F | 0 | null | null | null | null | IMMUNE SYSTEM | 05/31/17 | Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 6 | HOMO SAPIENS | null | homo sapiens | null | Mine, S., Nakamura, T., Uegaki, K., Hamada, D. | 2.88 | X-RAY DIFFRACTION | 0.297 | 0.257 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
6xjw | H | L | 0 | A | nucleic-acid | null | self-alkylating ribozyme (58-mer) | RNA/IMMUNE SYSTEM | 06/24/20 | Crystal structure of a self-alkylating ribozyme - alkylated form without biotin moiety | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | aeropyrum pernix | Koirala, D., Piccirilli, J.A. | 1.918 | X-RAY DIFFRACTION | 0.227 | 0.188 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7cmk | H | L | 0 | A | C | protein | protein | NA | NA | vp1 | vp3 | VIRUS | 07/27/20 | E30 E-particle in complex with 6C5 | ECHOVIRUS E30; MUS MUSCULUS | mus musculus | mus musculus | echovirus e30 | echovirus e30 | Wang, K., Zhu, F., Rao, Z., Wang, X. | 3.4 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
5lhp | B | null | 0 | A | protein | null | urokinase-type plasminogen activator | HYDROLASE | 07/12/16 | The p-aminobenzamidine active site inhibited catalytic domain of murine urokinase-type plasminogen activator in complex with the allosteric inhibitory nanobody Nb7 | VICUGNA PACOS; MUS MUSCULUS | vicugna pacos | null | mus musculus | Kromann-Hansen, T., Lange, E.L., Sorensen, H.P., Ghassabeh, G.H., Huang, M., Jensen, J.K., Muyldermans, S., Declerck, P.J., Andreasen, P.A. | 2.63 | X-RAY DIFFRACTION | 0.228 | 0.206 | false | true | IGHV1 | null | null | null | null | null | null | null |
3j8z | G | K | 0 | C | protein | null | l1 | VIRUS/IMMUNE SYSTEM | 11/20/14 | Cryo-EM reconstruction of quasi-HPV16 complex with H16.1A Fab | HUMAN PAPILLOMAVIRUS TYPE 16; MUS MUSCULUS | mus musculus | mus musculus | human papillomavirus type 16 | Guan, J., Hafenstein, S. | 14 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
7xic | E | F | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 04/12/22 | S-ECD (Omicron) in complex with STS165 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Li, Y.N., Shen, Y.P., Zhang, Y.Y., Yan, R.H. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
6vry | H | L | 0 | G | peptide | null | siv v2 peptide | IMMUNE SYSTEM | 02/10/20 | Structure of NCI09 fab in complex with SIV V2 peptide | MACACA MULATTA; SYNTHETIC CONSTRUCT | macaca mulatta | macaca mulatta | simian immunodeficiency virus | Gorman, J., Ahmadi, M., Kwong, P.D. | 1.4 | X-RAY DIFFRACTION | 0.168 | 0.147 | false | true | IGHV4 | IGKV3 | Kappa | null | null | null | null | null |
7v0v | A | null | 1 | null | null | null | null | IMMUNE SYSTEM | 05/11/22 | GFP Nanobody NMR Structure | SYNTHETIC CONSTRUCT | synthetic construct | null | null | Mueller, G.A. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
7rnj | H | L | 0 | B | peptide | null | spike glycoprotein stem helix peptide | ANTIVIRAL PROTEIN, IMMUNE SYSTEM | 07/29/21 | S2P6 Fab fragment bound to the SARS-CoV/SARS-CoV-2 spike stem helix peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Snell, G., Czudnochowski, N., Croll, T.I., Nix, J.C., Corti, D., Cameroni, E., Pinto, D., Beltramello, M., Sauer, M.M., Veesler, D. | 2.67 | X-RAY DIFFRACTION | 0.274 | 0.235 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
4k94 | H | L | 0 | C | C | carbohydrate | protein | NAG | NA | N-ACETYL-D-GLUCOSAMINE | mast/stem cell growth factor receptor kit | IMMUNE SYSTEM | 04/19/13 | Crystal structure of KIT D4D5 fragment in complex with anti-Kit antibody Fab19 | ESCHERICHIA COLI; HOMO SAPIENS | null | null | homo sapiens | homo sapiens | Resheynyak, A.V., Boggon, T.J., Lax, I., Schlessinger, J. | 2.4 | X-RAY DIFFRACTION | 0.235 | 0.198 | false | true | IGHV3 | IGKV1 | Kappa | 0 | -12.551945 | SPR | null | TBD |
6x18 | N | null | 0 | A | B | G | protein | protein | protein | NA | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | guanine nucleotide-binding protein g(i)/g(s)/g(o) subunitgamma-2 | MEMBRANE PROTEIN | 05/18/20 | GLP-1 peptide hormone bound to Glucagon-Like peptide-1 (GLP-1) Receptor | HOMO SAPIENS; LAMA GLAMA; SYNTHETIC CONSTRUCT | lama glama | null | homo sapiens | homo sapiens | homo sapiens | Belousoff, M.J., Zhang, X., Danev, R. | 2.1 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
5vpg | D | C | 0 | A | protein | null | der p 1 allergen | HYDROLASE/IMMUNE SYSTEM | 05/05/17 | CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1 | MUS MUSCULUS; DERMATOPHAGOIDES PTERONYSSINUS | mus musculus | mus musculus | dermatophagoides pteronyssinus | Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W. | 1.95 | X-RAY DIFFRACTION | 0.199 | 0.156 | false | true | IGHV3 | IGKV14 | Kappa | 0 | -10.533665 | ITC | null | TBD |
6wgj | E | F | 0 | null | null | null | null | IMMUNE SYSTEM | 04/05/20 | Fab portion of dupilumab with Crystal Kappa design and no interchain disulfide | HOMO SAPIENS | homo sapiens | homo sapiens | null | Druzina, Z., Atwell, S., Pustilnik, A., Antonysamy, S., Ho, C., Lieu, R., Hendle, J., Benach, J., Wang, J. | 1.9 | X-RAY DIFFRACTION | 0.289 | 0.235 | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
7jw0 | H | L | 0 | A | protein | null | sars-cov-2 spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 08/24/20 | SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Walls, A.C., Park, Y.J., Tortorici, M.A., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D. | 4.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6hup | G | null | 0 | A | E | protein | protein | NA | NA | gamma-aminobutyric acid receptor subunit alpha-1,gamma-aminobutyric acid receptor subunit alpha-1 | gamma-aminobutyric acid receptor subunit beta-3 | MEMBRANE PROTEIN | 10/09/18 | CryoEM structure of human full-length alpha1beta3gamma2L GABA(A)R in complex with diazepam (Valium), GABA and megabody Mb38. | BOS TAURUS; HOMO SAPIENS; LAMA GLAMA | lama glama | null | bos taurus, homo sapiens | homo sapiens | Masiulis, S., Desai, R., Uchanski, T., Serna Martin, I., Laverty, D., Karia, D., Malinauskas, T., Jasenko, Z., Pardon, E., Kotecha, A., Steyaert, J., Miller, K.W., Aricescu, A.R. | 3.58 | ELECTRON MICROSCOPY | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
6q0l | H | L | 0 | A | protein | null | hemagglutinin | IMMUNE SYSTEM | 08/01/19 | Inferred intermediate I-7 (I-7-1) of the human antibody lineage 652 in complex with influenza hemagglutinin head domain of A/Beijing/262/95(H1N1) | INFLUENZA A VIRUS (A/BEIJING/262/1995(H1N1)); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (a/beijing/262/1995(h1n1)) | McCarthy, K.R., Harrison, S.C. | 2.5 | X-RAY DIFFRACTION | 0.260 | 0.217 | false | true | IGHV4 | IGLV3 | Lambda | null | null | null | null | null |
6kpf | S | s | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(i) subunit alpha-1 | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | MEMBRANE PROTEIN | 08/15/19 | Cryo-EM structure of a class A GPCR with G protein complex | HOMO SAPIENS | homo sapiens | null | homo sapiens | homo sapiens | Li, X.T., Hua, T., Wu, L.J., Makriyannis, A., Shen, L., Wang, Y.X., Liu, Z.J. | 2.9 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
1fl3 | H | L | 0 | L | Hapten | SPB | 4-(4-STYRYL-PHENYLCARBAMOYL)-BUTYRIC ACID | IMMUNE SYSTEM | 08/11/00 | CRYSTAL STRUCTURE OF THE BLUE FLUORESCENT ANTIBODY (19G2) IN COMPLEX WITH STILBENE HAPTEN AT 277K | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Stevens, R.C., Beuscher IV, A.E. | 2.45 | X-RAY DIFFRACTION | 0.262 | 0.231 | false | false | IGHV5 | IGKV2 | Kappa | 0 | -9.271239 | Unknown | null | TBD |
4wff | G | F | 0 | B | protein | null | potassium channel subfamily k member 4 | METAL TRANSPORT | 09/15/14 | Human TRAAK K+ channel in a K+ bound nonconductive conformation | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Brohawn, S.G., MacKinnon, R. | 2.5 | X-RAY DIFFRACTION | 0.245 | 0.213 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
2qtj | B | M | 3 | null | null | null | null | IMMUNE SYSTEM | 08/02/07 | Solution structure of human dimeric immunoglobulin A | HOMO SAPIENS | homo sapiens | homo sapiens | null | Bonner, A., Furtado, P.B., Almogren, A., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING | null | null | false | false | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5jz7 | C | D | 0 | A | protein | null | beta-nerve growth factor | SIGNALING PROTEIN | 05/16/16 | NGF IN COMPLEX WITH MEDI578 scFv | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Olsson, L.-L., Aagaard, A. | 3.4 | X-RAY DIFFRACTION | 0.268 | 0.258 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
2r6p | F | G | 0 | C | protein | null | major envelope protein e | Virus/Immune System | 09/06/07 | Fit of E protein and Fab 1A1D-2 into 24 angstrom resolution cryoEM map of Fab complexed with dengue 2 virus. | DENGUE VIRUS 2 PUERTO RICO/PR159-S1/1969; MUS MUSCULUS | mus musculus | mus musculus | dengue virus 2 puerto rico/pr159-s1/1969 | Lok, S.M., Kostyuchenko, V.K., Holdaway, H.A., Chipman, P.R., Kuhn, R.J, Rossmann, M.G | 24 | ELECTRON MICROSCOPY | null | null | false | true | IGHV14 | IGKV3 | Kappa | null | null | null | null | null |
6war | B | null | 0 | A | protein | null | spike protein | VIRAL PROTEIN/IMMUNE SYSTEM | 04/08/20 | Crystal structure of the MERS-CoV RBD bound by the neutralizing single-domain antibody MERS VHH-55 | MIDDLE EAST RESPIRATORY SYNDROME-RELATED CORONAVIRUS; LAMA GLAMA | lama glama | null | middle east respiratory syndrome-relatedcoronavirus | Wrapp, D., Torres, G.M., McLellan, J.S. | 3.4 | X-RAY DIFFRACTION | 0.268 | 0.214 | false | true | IGHV1 | null | null | null | null | null | null | null |
7jtf | C | D | 0 | F | protein | null | envelope glycoprotein e2 | IMMUNE SYSTEM/VIRAL PROTEIN | 08/17/20 | Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody RM2-01 | MACACA MULATTA; RECOMBINANT HEPATITIS C VIRUS HK6A/JFH-1 | macaca mulatta | macaca mulatta | recombinant hepatitis c virus hk6a/jfh-1 | Tzarum, N., Wilson, I.A., Law, M. | 3.35 | X-RAY DIFFRACTION | 0.296 | 0.242 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7u8l | H | L | 0 | B | A | protein | protein | NA | NA | hemagglutinin ha2 subunit | hemagglutinin ha1 subunit | VIRAL PROTEIN/Immune System | 03/08/22 | Crystal structure of chimeric hemagglutinin cH15/3 in complex with broad protective antibody 31.a.83 | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Zhu, X., Wilson, I.A. | 4.56 | X-RAY DIFFRACTION | 0.305 | 0.300 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7e5r | N | D | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 02/20/21 | SARS-CoV-2 S trimer with three-antibody cocktail complex | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Sun, Y., Wang, L., Wang, N., Feng, R., Wang, X. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV6 | Kappa | null | null | null | null | null |
4rir | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 10/07/14 | Structural Analysis of the Unmutated Ancestor of the HIV-1 Envelope V2 Region Antibody CH58 Isolated From an RV144 HIV-1 Vaccine Efficacy Trial Vaccinee and Associated with Decreased Transmission Risk | HOMO SAPIENS | homo sapiens | homo sapiens | null | Nicely, N.I., Wiehe, K., Kepler, T.B., Jaeger, F.H., Dennison, S.M., Liao, H.-X., Alam, S.M., Hwang, K.-K., Bonsignori, M., Rerks-Ngarm, S., Nitayaphan, S., Pitisuttithum, P., Kaewkungwal, J., Robb, M.L., O'Connell, R.J., Michael, N.L., Kim, J.H., Haynes, B.F. | 2.5 | X-RAY DIFFRACTION | 0.289 | 0.220 | false | true | IGHV5 | IGLV6 | Lambda | null | null | null | null | null |
3o41 | A | B | 0 | C | peptide | null | fusion glycoprotein f1 | IMMUNE SYSTEM/VIRAL PROTEIN | 07/26/10 | Crystal Structure of 101F Fab Bound to 15-mer Peptide Epitope | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | human respiratory syncytial virus a | McLellan, J.S., Chen, M., Chang, J.S., Yang, Y., Kim, A., Graham, B.S., Kwong, P.D. | 1.95 | X-RAY DIFFRACTION | 0.217 | 0.177 | false | true | IGHV8 | IGKV3 | Kappa | null | null | null | null | null |
5nqw | D | null | 0 | A | protein | null | immunoglobulin heavy constant epsilon | IMMUNE SYSTEM | 04/21/17 | IgE-Fc in complex with single domain antibody 026 | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Laursen, N.S., Jabs, F., Spillner, E., Andersen, G.R. | 3.4 | X-RAY DIFFRACTION | 0.241 | 0.212 | false | true | IGHV3 | null | null | 0 | -12.078842 | SPR | null | TBD |
6vn0 | H | L | 0 | B | A | protein | protein | NA | NA | envelope glycoprotein gp41 | envelope glycoprotein gp160 | VIRAL PROTEIN/Immune System | 01/29/20 | BG505 SOSIP.v4.1 in complex with rhesus macaque Fab RM20F | HUMAN IMMUNODEFICIENCY VIRUS 1; MACACA MULATTA | macaca mulatta | macaca mulatta | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Cottrell, C.A., Shin, M., Ward, A.B. | 4.25 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV6 | Kappa | null | null | null | null | null |
5d6c | B | A | 0 | B | Hapten | 57S | 4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]-5-O-phosphono-D-ribitol | IMMUNE SYSTEM | 08/12/15 | Structure of 4497 Fab bound to synthetic wall teichoic acid fragment | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Lupardus, P.J., Fong, R. | 1.72 | X-RAY DIFFRACTION | 0.238 | 0.203 | false | true | IGHV3 | IGKV4 | Kappa | null | null | null | null | null |
3j30 | F | E | 0 | null | null | null | null | IMMUNE SYSTEM | 01/28/13 | Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab CHK152 | MUS MUSCULUS | mus musculus | mus musculus | null | Sun, S., Xiang, Y., Rossmann, M.G. | 16 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
7czr | J | N | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/09/20 | S protein of SARS-CoV-2 in complex bound with P5A-1B8_2B | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Yan, R.H., Zhang, Y.Y., Li, Y.N., Zhou, Q. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
2r2h | B | A | 0 | B | carbohydrate | KO2 | PROP-2-EN-1-YL D-GLYCERO-ALPHA-D-TALO-OCT-2-ULOPYRANOSIDONIC ACID | IMMUNE SYSTEM | 08/25/07 | Structure of S25-2 in Complex with Ko | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Brooks, C.L., Evans, S.V. | 2.0 | X-RAY DIFFRACTION | 0.262 | 0.215 | false | false | IGHV7 | IGKV8 | Kappa | null | null | null | null | null |
6vbp | A | B | 0 | F | peptide | null | envelope glycoprotein gp160 | IMMUNE SYSTEM/Viral Protein | 12/19/19 | Crystal structure of anti-HIV-1 antibody DH815 bound to gp120 V2 peptide | HOMO SAPIENS; SYNTHETIC CONSTRUCT | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Janus, B.M., Ofek, G. | 2.298 | X-RAY DIFFRACTION | 0.229 | 0.180 | false | true | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
6w09 | L | P | 0 | H | protein | null | e2 glycoprotein | VIRUS/IMMUNE SYSTEM | 02/29/20 | Human mAbs broadly protect against infection of arthritiogenic alphaviruses by recognizing conserved elements of the MXR8 receptor binding domain | CHIKUNGUNYA VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | chikungunya virus | Miller, A.S., Kuhn, R.J. | 5.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV9 | IGLV1 | Lambda | null | null | null | null | null |
7lbf | H | G | 0 | A | protein | null | envelope glycoprotein h | VIRAL PROTEIN/Immune System | 01/07/21 | CryoEM structure of the HCMV Trimer gHgLgO in complex with human Platelet-derived growth factor receptor alpha and neutralizing fabs 13H11 and MSL-109 | HUMAN CYTOMEGALOVIRUS (STRAIN MERLIN); HUMAN CYTOMEGALOVIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | human cytomegalovirus (strain merlin) | Kschonsak, M., Rouge, L., Arthur, C.P., Hoangdung, H., Patel, N., Kim, I., Johnson, M., Kraft, E., Rohou, A.L., Gill, A., Martinez-Martin, N., Payandeh, J., Ciferri, C. | 2.8 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV2 | Kappa | null | null | null | null | null |
7m52 | H | L | 0 | A | peptide | null | spike glycoprotein stem helix peptide | ANTIVIRAL PROTEIN, IMMUNE SYSTEM | 03/22/21 | B6 Fab fragment bound to the HKU4 spike stem helix peptide | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | bat coronavirus hku4 | Sauer, M.M., Park, Y.J., Veesler, D., Center for Structural Genomics of Infectious Diseases (CSGID) | 1.5 | X-RAY DIFFRACTION | 0.197 | 0.164 | false | true | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
1dbm | H | L | 0 | H | Hapten | SIH | PROGESTERONE-11-ALPHA-OL-HEMISUCCINATE | IMMUNOGLOBULIN | 08/24/93 | MOLECULAR BASIS OF CROSS-REACTIVITY AND THE LIMITS OF ANTIBODY-ANTIGEN COMPLEMENTARITY | MUS MUSCULUS | mus musculus | mus musculus | mus musculus | Arevalo, J.H., Wilson, I.A. | 2.7 | X-RAY DIFFRACTION | unknown | 0.218 | false | true | IGHV9 | IGKV1 | Kappa | null | null | null | null | null |
7lr4 | H | L | 0 | D | protein | null | hapless 2 | CELL ADHESION/IMMUNE SYSTEM | 02/15/21 | Complex of Fab 2/1.12 with domain 3 of P. berghei HAP2 | MUS MUSCULUS; PLASMODIUM BERGHEI | mus musculus | mus musculus | plasmodium berghei | Feng, J., Dong, X.C., Su, Y., Lu, X.F., Springer, T.A. | 2.1 | X-RAY DIFFRACTION | 0.231 | 0.189 | false | true | IGHV1 | IGKV10 | Kappa | null | null | null | null | null |
5uk4 | n | null | 0 | N | protein | null | anti-vesicular stomatitis virus n vhh | Viral Protein/RNA/Immune System | 01/19/17 | VESICULAR STOMATITS VIRUS N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1307 | VESICULAR STOMATITIS INDIANA VIRUS (STRAIN SAN JUAN); VICUGNA PACOS | vicugna pacos | null | vesicular stomatitis indiana virus (strain sanjuan) | Hanke, L., Knockenhauer, K.E., Ploegh, H.L., Schwartz, T.U. | 3.204 | X-RAY DIFFRACTION | 0.288 | 0.237 | false | false | IGHV1 | null | null | null | null | null | null | null |
5kte | H | L | 0 | A | protein | null | divalent metal cation transporter mnth | TRANSPORT PROTEIN/IMMUNE SYSTEM | 07/11/16 | Crystal structure of Deinococcus radiodurans MntH, an Nramp-family transition metal transporter | MUS MUSCULUS; DEINOCOCCUS RADIODURANS | mus musculus | mus musculus | deinococcus radiodurans | Bane, L.B., Gaudet, R., Weihofen, W.A., Singharoy, A. | 3.941 | X-RAY DIFFRACTION | 0.313 | 0.268 | false | true | IGHV2 | IGKV5 | Kappa | null | null | null | null | null |
5grw | B | b | 0 | null | null | null | null | IMMUNE SYSTEM | 08/12/16 | Crystal structure of homo-specific diabody | HOMO SAPIENS | homo sapiens | null | null | Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O. | 2.8 | X-RAY DIFFRACTION | 0.182 | 0.182 | true | true | unknown | unknown | unknown | null | null | null | null | null |
6xcn | F | G | 0 | E | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 06/08/20 | Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 2) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Barnes, C.O., Bjorkman, P.J. | 3.66 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
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