| # Main panel summary |
|
|
| - Total probes emitted: **10000** (target 10000) |
| - Seed: 42 |
| - Length range: 128-1024 bp |
|
|
| ## Per-element breakdown |
|
|
| | element | group | target | emitted | datasets | |
| |:------------------------|:--------|---------:|----------:|-----------:| |
| | promoter | Human | 1400 | 1400 | 3 | |
| | enhancer | Human | 1400 | 1400 | 1 | |
| | splice_donor | Human | 600 | 600 | 1 | |
| | splice_acceptor | Human | 600 | 600 | 1 | |
| | chromatin_access | Plant | 450 | 450 | 7 | |
| | polyA | Plant | 350 | 350 | 6 | |
| | lncRNA | Plant | 300 | 300 | 6 | |
| | nascent_RNA | Plant | 200 | 200 | 1 | |
| | splicing_plant_donor | Plant | 150 | 150 | 1 | |
| | splicing_plant_acceptor | Plant | 150 | 150 | 1 | |
| | yeast_genome | Fungi | 1200 | 1200 | 10 | |
| | fungi_genome | Fungi | 1500 | 1500 | 1 | |
| | virus_variants | Virus | 600 | 600 | 1 | |
| | virus_species | Virus | 1100 | 1100 | 1 | |
|
|
| ## Length distribution |
|
|
| | count | mean | std | min | 25% | 50% | 75% | max | |
| |--------:|-------:|------:|------:|------:|------:|------:|------:| |
| | 10000 | 610.1 | 334.9 | 156 | 300 | 500 | 1024 | 1024 | |
|
|
| ## Species × functional element cross-tab |
|
|
| | functional_element | species | n | |
| |:------------------------|:--------------------------|-----:| |
| | chromatin_access | Arabidopsis thaliana | 64 | |
| | chromatin_access | Brachypodium distachyon | 64 | |
| | chromatin_access | Oryza sativa MH63 | 64 | |
| | chromatin_access | Oryza sativa ZS97 | 64 | |
| | chromatin_access | Setaria italica | 64 | |
| | chromatin_access | Sorghum bicolor | 65 | |
| | chromatin_access | Zea mays | 65 | |
| | enhancer | Homo sapiens | 1400 | |
| | fungi_genome | fungi_sp_0 | 75 | |
| | fungi_genome | fungi_sp_1 | 75 | |
| | fungi_genome | fungi_sp_10 | 75 | |
| | fungi_genome | fungi_sp_11 | 75 | |
| | fungi_genome | fungi_sp_12 | 75 | |
| | fungi_genome | fungi_sp_13 | 75 | |
| | fungi_genome | fungi_sp_14 | 75 | |
| | fungi_genome | fungi_sp_15 | 75 | |
| | fungi_genome | fungi_sp_16 | 75 | |
| | fungi_genome | fungi_sp_17 | 75 | |
| | fungi_genome | fungi_sp_18 | 75 | |
| | fungi_genome | fungi_sp_19 | 75 | |
| | fungi_genome | fungi_sp_2 | 75 | |
| | fungi_genome | fungi_sp_3 | 75 | |
| | fungi_genome | fungi_sp_4 | 75 | |
| | fungi_genome | fungi_sp_5 | 75 | |
| | fungi_genome | fungi_sp_6 | 75 | |
| | fungi_genome | fungi_sp_7 | 75 | |
| | fungi_genome | fungi_sp_8 | 75 | |
| | fungi_genome | fungi_sp_9 | 75 | |
| | lncRNA | Glycine max | 50 | |
| | lncRNA | Manihot esculenta | 50 | |
| | lncRNA | Solanum lycopersicum | 50 | |
| | lncRNA | Sorghum bicolor | 50 | |
| | lncRNA | Triticum aestivum | 50 | |
| | lncRNA | Zea mays | 50 | |
| | nascent_RNA | Manihot esculenta | 200 | |
| | polyA | Arabidopsis thaliana | 58 | |
| | polyA | Chlamydomonas reinhardtii | 58 | |
| | polyA | Medicago truncatula | 58 | |
| | polyA | Oryza sativa indica | 58 | |
| | polyA | Oryza sativa japonica | 59 | |
| | polyA | Trifolium pratense | 59 | |
| | promoter | Homo sapiens | 1400 | |
| | splice_acceptor | Homo sapiens | 600 | |
| | splice_donor | Homo sapiens | 600 | |
| | splicing_plant_acceptor | Arabidopsis thaliana | 150 | |
| | splicing_plant_donor | Arabidopsis thaliana | 150 | |
| | virus_species | virus_sp_0 | 44 | |
| | virus_species | virus_sp_1 | 44 | |
| | virus_species | virus_sp_10 | 44 | |
| | virus_species | virus_sp_11 | 44 | |
| | virus_species | virus_sp_12 | 44 | |
| | virus_species | virus_sp_13 | 44 | |
| | virus_species | virus_sp_14 | 44 | |
| | virus_species | virus_sp_15 | 44 | |
| | virus_species | virus_sp_16 | 44 | |
| | virus_species | virus_sp_17 | 44 | |
| | virus_species | virus_sp_18 | 44 | |
| | virus_species | virus_sp_19 | 44 | |
| | virus_species | virus_sp_2 | 44 | |
| | virus_species | virus_sp_20 | 44 | |
| | virus_species | virus_sp_21 | 44 | |
| | virus_species | virus_sp_22 | 44 | |
| | virus_species | virus_sp_23 | 44 | |
| | virus_species | virus_sp_24 | 44 | |
| | virus_species | virus_sp_3 | 44 | |
| | virus_species | virus_sp_4 | 44 | |
| | virus_species | virus_sp_5 | 44 | |
| | virus_species | virus_sp_6 | 44 | |
| | virus_species | virus_sp_7 | 44 | |
| | virus_species | virus_sp_8 | 44 | |
| | virus_species | virus_sp_9 | 44 | |
| | virus_variants | covid_var_0 | 67 | |
| | virus_variants | covid_var_1 | 67 | |
| | virus_variants | covid_var_2 | 66 | |
| | virus_variants | covid_var_3 | 67 | |
| | virus_variants | covid_var_4 | 66 | |
| | virus_variants | covid_var_5 | 67 | |
| | virus_variants | covid_var_6 | 66 | |
| | virus_variants | covid_var_7 | 67 | |
| | virus_variants | covid_var_8 | 67 | |
| | yeast_genome | Saccharomyces cerevisiae | 1200 | |
|
|
| ## GC content by element |
|
|
| | functional_element | count | mean | min | max | |
| |:------------------------|--------:|-------:|------:|------:| |
| | chromatin_access | 450 | 0.49 | 0.239 | 0.75 | |
| | enhancer | 1400 | 0.483 | 0.2 | 0.81 | |
| | fungi_genome | 1500 | 0.462 | 0.033 | 0.665 | |
| | lncRNA | 300 | 0.458 | 0.218 | 0.763 | |
| | nascent_RNA | 200 | 0.287 | 0.128 | 0.424 | |
| | polyA | 350 | 0.404 | 0.218 | 0.672 | |
| | promoter | 1400 | 0.593 | 0.29 | 0.877 | |
| | splice_acceptor | 600 | 0.487 | 0.252 | 0.838 | |
| | splice_donor | 600 | 0.46 | 0.242 | 0.712 | |
| | splicing_plant_acceptor | 150 | 0.393 | 0.261 | 0.505 | |
| | splicing_plant_donor | 150 | 0.389 | 0.236 | 0.513 | |
| | virus_species | 1100 | 0.354 | 0.149 | 0.741 | |
| | virus_variants | 600 | 0.381 | 0.322 | 0.484 | |
| | yeast_genome | 1200 | 0.383 | 0.232 | 0.552 | |
| |
