type
string
sequence
string
canonical_smiles
string
pKd_value
float64
label
int64
buffer
string
origin
string
source
string
DNA
ATGGGGTCGGGCGGGCCGGGTGTC
CC1=C(CCC(=O)O)c2cc3nc(cc4[nH]c(cc5[nH]c(cc1n2)c(C)c5C(C)O)c(C)c4C(C)O)C(C)=C3CCC(=O)O
3.823909
0
100 mM Tris±acetate pH 8.0, 200 mM sodium acetate,50 mM potassium acetate, 25 mM magnesium acetate,5% dioxane
https://pubmed.ncbi.nlm.nih.gov/11128644/
UTexas
DNA
GACAAGGAAAATCCTTCAATGAAGTGGGTC
COC(=O)C1C(OC(=O)c2ccccc2)CC2CCC1N2C
4
0
Selection buffer (c(TRIS) = 20 mM, pH 7.4, c(NaCl) = 140 mM, c(KCl) = 5 mM)
https://pubmed.ncbi.nlm.nih.gov/11457319/
UTexas
DNA
GGGAGACAAGGAAAATCCTTCAATGAAGTGGGTCGACA
COC(=O)C1C(OC(=O)c2ccccc2)CC2CCC1N2C
4.69897
1
Selection buffer (c(TRIS) = 20 mM, pH 7.4, c(NaCl) = 140 mM, c(KCl) = 5 mM)
https://pubmed.ncbi.nlm.nih.gov/11457319/
UTexas
RNA
UAGGGAAUUCGUCGACGGAUCCUGAACGGAGGGCGGAUGUAGAACAGGGGCUGGAAUGAUUCGGGAUUUUCUGCUGCAGGUCGACGCAUGCGCCG
CCc1c(C)c2cc3nc(cc4nc(cc5c(CC)c(C)c(cc1[nH]2)n5C)C(C)=C4CCC(=O)O)C(CCC(=O)O)=C3C
6.60206
1
100 mM Tris-acetate (pH 7.4), 200 mM NaOAc, 25 mM KOAc,10 mM Mg(OAc)2, 0.5% Triton X-100, and 5% DSMO
https://pubmed.ncbi.nlm.nih.gov/11668446/
UTexas
RNA
UAGGGAAUUCGUCGACGGAUCCAGUUCACUCGACCAAGGCGUCCCAAGCGGAGGAUCGCAAGGAGGUGUAGACGUCUGCAGGUCGACGCAUGCGCCG
CCc1c(C)c2cc3nc(cc4nc(cc5c(CC)c(C)c(cc1[nH]2)n5C)C(C)=C4CCC(=O)O)C(CCC(=O)O)=C3C
6.180456
1
100 mM Tris-acetate (pH 7.4), 200 mM NaOAc, 25 mM KOAc,10 mM Mg(OAc)2, 0.5% Triton X-100, and 5% DSMO
https://pubmed.ncbi.nlm.nih.gov/11668446/
UTexas
DNA
AATTCGCTAGCCGAGCAGACGGCGTACGGAATTCGAGCTCGGTACCCGGGGATCC
NC(=O)C(N)Cc1ccc(O)cc1
3.119186
0
Tris 20 mM, pH 7.6, NaCl 300 mM and MgCl2 5 mM
https://pubmed.ncbi.nlm.nih.gov/11557341/
UTexas
RNA
GUGACGCGACUAGUUACGGAUCUAGCAGUUCAGGUAACCACGUAAGAUACGGGUCUAGAUUCAUUCAGUUGGCGCCUCCUAUAGUGAGUCGUAUUACAU
Nc1nc2c(ncn2C2OC(COP(=O)(O)OP(=O)(O)OP(=O)(O)O)C(O)C2O)c(=O)[nH]1
6.60206
1
200 mM KCl/10 mM potassium phosphate/5 mM MgCl2/0.1 mM EDTA, pH 6.2
https://pubmed.ncbi.nlm.nih.gov/12185247/
UTexas
RNA
CGUGACGUGUGUGUGGGCUGUGGCAGACGUAAGGCUGAGAUUGCCGUCCGUAAUUGAGUGCGGCAGCGAGAGAGAGCAGACUCUCUCUCGUCCUCUUCUC
Nc1ncnc2c1ncn2C1OC(COP(=O)(O)OP(=O)(O)OP(=O)(O)O)C(O)C1O
5.966576
1
100 mM NaCl; 1 mM MgCl2; 20 mM Tris-HCl, pH 7.12
https://pubmed.ncbi.nlm.nih.gov/12873145/
UTexas
DNA
GTACGAATTCACGAGGTTGCCCGCGCCCCCTCAGCCCTGTACGAATTCACGAGGTTGCCAGCATGGAGTCGGATCCTCTA
CC(=O)NC1C(O)CC(OC2C(O)C(CO)OC(OC(C(O)CO)C(O)C(O)C=O)C2O)(C(=O)O)OC1C(O)C(O)CO
null
1
Tris–HCl buffer (50 mM, pH 7.6) containing 250 mM NaCl and 5 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/14980623/
UTexas
DNA
GTACGAATTCACGAGGTTGCCCCGGGCCGCCCCCCTGTACGAATTCACGAGGTTGCCAGCATGGAGTCGGATCCTCTA
CC(=O)NC1C(O)CC(OC2C(O)C(CO)OC(OC(C(O)CO)C(O)C(O)C=O)C2O)(C(=O)O)OC1C(O)C(O)CO
null
1
Tris–HCl buffer (50 mM, pH 7.6) containing 250 mM NaCl and 5 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/14980623/
UTexas
DNA
GTACGAATTCACGAGGTTGCCCAGGTCGGGGGGGGCCCCGTACGAATTCACGAGGTTGCCAGCATGGAGTCGGATCCTCTA
CC(=O)NC1C(O)CC(OC2C(O)C(CO)OC(OC(C(O)CO)C(O)C(O)C=O)C2O)(C(=O)O)OC1C(O)C(O)CO
null
1
Tris–HCl buffer (50 mM, pH 7.6) containing 250 mM NaCl and 5 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/14980623/
UTexas
DNA
GTACGAATTCACGAGGTTGCCGAGGTCGGGGGGGGCCCTGTACGAATTCACGAGGTTGGGAGCATGGAGTCGGATCCTCTA
CC(=O)NC1C(O)CC(OC2C(O)C(CO)OC(OC(C(O)CO)C(O)C(O)C=O)C2O)(C(=O)O)OC1C(O)C(O)CO
null
1
Tris–HCl buffer (50 mM, pH 7.6) containing 250 mM NaCl and 5 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/14980623/
UTexas
DNA
ATAGGAGTCGACCGACCAGAACATGCGCCTTCCCCCTGTGGTTGGTGTCAGTCGGCCTGTGTATGTGCGTCTACATCTAGACTCAT
COC(=O)CCCC(C)O
null
1
PBS(+) buffer (pH 7.2) containing 150 mM NaCl, 2 mM MgCl2, and 2 mM CaCl2
https://pubmed.ncbi.nlm.nih.gov/15225715/
UTexas
DNA
ATAGGAGTCGACCGACCAGAACATGCGCCTTCCCCCTGTGGTTGGTGTCAGCCGGCCTGTGTATGTGCGTCTACATCTAGACTCAT
COC(=O)CCCC(C)O
null
1
PBS(+) buffer (pH 7.2) containing 150 mM NaCl, 2 mM MgCl2, and 2 mM CaCl2
https://pubmed.ncbi.nlm.nih.gov/15225715/
UTexas
DNA
ATACCAGCTTATTCAATTTGAGGCGGGTGGGTGGGTTGAATACGCTGATCACCCCATCGGAGAACGTTAAGGCGCTTTAGATAGTAAGTGCAATCT
NCCO
8.045757
1
100 mmol L−1 NaCl/20 mmol L−1 Tris/HCl, pH 7.6/2 mmol L−1 MgCl2/5 mmol L−1 KCl/1 mmol L−1 CaCl2/0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/16289104/
UTexas
DNA
ATACCAGCTTATTCAATTGCTGCGAGGTGGGTGGGTGGGAGCAATTGGTCCTCGCTTAGCTTCTACGGTGGGCTATCTAGATAGTAAGTGCAATCT
NCCO
7.769551
1
100 mmol L−1 NaCl/20 mmol L−1 Tris/HCl, pH 7.6/2 mmol L−1 MgCl2/5 mmol L−1 KCl/1 mmol L−1 CaCl2/0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/16289104/
UTexas
DNA
ATACCAGCTTATTCAATTGCTGTGAGGTGGGTGGGTGGGAGCAATTGGTCCTCGCTTAGCTTCTACGGTGGGCTATCTAGATAGTAAGTGCAATCT
NCCO
7.823909
1
100 mmol L−1 NaCl/20 mmol L−1 Tris/HCl, pH 7.6/2 mmol L−1 MgCl2/5 mmol L−1 KCl/1 mmol L−1 CaCl2/0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/16289104/
UTexas
DNA
ATACCAGCTTATTCAATTGCTGCGAGGTGGGTGGGTGGGAGCAATTGATCCTCGCTTAGCTTCTACGGTGGGCTATCTAGATAGTAAGTGCAATCT
NCCO
8
1
100 mmol L−1 NaCl/20 mmol L−1 Tris/HCl, pH 7.6/2 mmol L−1 MgCl2/5 mmol L−1 KCl/1 mmol L−1 CaCl2/0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/16289104/
UTexas
DNA
ATACCAGCTTATTCAATTGCTGCGAGGTGGGTGGGTGGGAGCAATTGGTCCTTGCTTAGCTTCTACGGTGGGCTATCTAGATAGTAAGTGCAATCT
NCCO
7.721246
1
100 mmol L−1 NaCl/20 mmol L−1 Tris/HCl, pH 7.6/2 mmol L−1 MgCl2/5 mmol L−1 KCl/1 mmol L−1 CaCl2/0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/16289104/
UTexas
RNA
GAAUUCGUCGACGGAUCCGCAGUGCGUCUUGGGUUGUGAGCUCCCGGCUCGCAUUGUGAGGUGGAGGGGGACGUGCUGCAGGUCGACGCAUGCGCCG
NC(Cc1cc(I)c(Oc2cc(I)c(O)c(I)c2)c(I)c1)C(=O)O
4.30103
1
10 mM Tris/HCl (pH 7.5), 500 mM NaCl and 1 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/17163839/
UTexas
DNA
GATCGGGTGTGGGTGGCGTAAAGGGAGCATCGGACA
CC1Cc2c(Cl)cc(C(=O)NC(Cc3ccccc3)C(=O)O)c(O)c2C(=O)O1
9.69897
1
Selection buffer (SB), composed of 10 mM HEPES, pH 7.0, 120 mM NaCl, 5 mM KCl, and 5 mM MgCl2; binding buffer (BB): (10 mM TRIS, pH 8.5,120 mM NaCl, 5 mM KCl, and 20 mM CaCl2)
https://pubmed.ncbi.nlm.nih.gov/18983163/
UTexas
DNA
GATCGGGTGTGGGTGGCGTAAAGGGAGCATCGG
CC1Cc2c(Cl)cc(C(=O)NC(Cc3ccccc3)C(=O)O)c(O)c2C(=O)O1
9.69897
1
Selection buffer (SB), composed of 10 mM HEPES, pH 7.0, 120 mM NaCl, 5 mM KCl, and 5 mM MgCl2; binding buffer (BB): (10 mM TRIS, pH 8.5,120 mM NaCl, 5 mM KCl, and 20 mM CaCl2)
https://pubmed.ncbi.nlm.nih.gov/18983163/
UTexas
DNA
TGGTGGCTGTAGGTCAGCATCTGATCGGGTGTGGGTGGCGTAAAGGGAGCATCGGACAACG
CC1Cc2c(Cl)cc(C(=O)NC(Cc3ccccc3)C(=O)O)c(O)c2C(=O)O1
9.443697
1
Selection buffer (SB), composed of 10 mM HEPES, pH 7.0, 120 mM NaCl, 5 mM KCl, and 5 mM MgCl2; binding buffer (BB): (10 mM TRIS, pH 8.5,120 mM NaCl, 5 mM KCl, and 20 mM CaCl2)
https://pubmed.ncbi.nlm.nih.gov/18983163/
UTexas
DNA
GATCGGGTGTGGGTGGCGTAAAGGGAGCAT
CC1Cc2c(Cl)cc(C(=O)NC(Cc3ccccc3)C(=O)O)c(O)c2C(=O)O1
8.79588
1
Selection buffer (SB), composed of 10 mM HEPES, pH 7.0, 120 mM NaCl, 5 mM KCl, and 5 mM MgCl2; binding buffer (BB): (10 mM TRIS, pH 8.5,120 mM NaCl, 5 mM KCl, and 20 mM CaCl2)
https://pubmed.ncbi.nlm.nih.gov/18983163/
UTexas
DNA
GATCGGGTGTGGGTGGCGTAAAGGGAGCATCG
CC1Cc2c(Cl)cc(C(=O)NC(Cc3ccccc3)C(=O)O)c(O)c2C(=O)O1
9.39794
1
Selection buffer (SB), composed of 10 mM HEPES, pH 7.0, 120 mM NaCl, 5 mM KCl, and 5 mM MgCl2; binding buffer (BB): (10 mM TRIS, pH 8.5,120 mM NaCl, 5 mM KCl, and 20 mM CaCl2)
https://pubmed.ncbi.nlm.nih.gov/18983163/
UTexas
DNA
CGTACGGAATTCGCTAGCACGTTGACGCTGGTGCCCGGTTGTGGTGCGAGTGTTGTGTGGATCCGAGCTCCACGTG
CN(C)C1C(=O)C(C(N)=O)=C(O)C2(O)C(=O)C3=C(O)c4c(O)cccc4C(C)(O)C3C(O)C12
7.917933
1
100 mM NaCl, 20 mM Tris–HCl, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02 Tween 20, pH 7.6
https://pubmed.ncbi.nlm.nih.gov/17988875/
UTexas
DNA
AGGGGTAAGGGGTGGGGGTGGGT
COc1cccc2c1C(=O)c1c(O)c3c(c(O)c1C2=O)CC(O)(C(C)=O)CC3OC1CC(N)C(O)C(C)O1
null
1
20 mM Tris–HCl [pH 7.4], 140 mM NaCl, 5 mM KCl, 1 mM MgCl2, 1 mM CaCl2, and 0.05% [v/v] Tween 20
https://pubmed.ncbi.nlm.nih.gov/17931589/
UTexas
DNA
ATCCGTCACACCTGCTCTAGGGGATCAAAGCTATGCGACCATGCGAGTGGATACTGGTGTTGGCTCCCGTAT
CC(=O)OCC[N+](C)(C)C
null
1
0.5 M NaCl, 10 mM Tris HCl, and 1 mM MgCl2 in sterile deionized nuclease-free water (NFW) at pH 7.2–7.4
https://pubmed.ncbi.nlm.nih.gov/18311508/
UTexas
DNA
ATACCAGCTTATTCAATTACACACCGAGACCGCACTTGTACTCCCTAGCCGCCTCCGTAGATAGTAAGTGCAATCT
O=C(O)Cc1ccccc1Nc1c(Cl)cccc1Cl
6.997229
1
100 mM NaCl, 20 mM Tris–HCl pH 7.6, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/19604698/
UTexas
DNA
ATACCAGCTTATTCAATTGGCAGTAGGTGTACATGCAAAGCCAGTGTGGGTCCCTGTGTAGATAGTAAGTGCAATCT
O=C(O)Cc1ccccc1Nc1c(Cl)cccc1Cl
6.779003
1
100 mM NaCl, 20 mM Tris–HCl pH 7.6, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/19604698/
UTexas
DNA
ATACCAGCTTATTCAATTGCCCGGCAACAGGTTGTGACATGCCAGTGCGAGACCGCCCGAGATAGTAAGTGCAATCT
O=C(O)Cc1ccccc1Nc1c(Cl)cccc1Cl
6.827601
1
100 mM NaCl, 20 mM Tris–HCl pH 7.6, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/19604698/
UTexas
DNA
ATACCAGCTTATTCAATTGCAACGTGGCGGTCAGTCAGCGGGTGGTGGGTTCGGTCCAGATAGTAAGTGCAATCT
O=C(O)Cc1ccccc1Nc1c(Cl)cccc1Cl
7.369572
1
100 mM NaCl, 20 mM Tris–HCl pH 7.6, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/19604698/
UTexas
RNA
GGAAUGGAUCCACAUCUACGAAUUCGCAUUGUCCGCACGCAAAGCAUUAUUGUGAUUCACUGCAGACUUGACGAAGCUU
CCCCCCCCCCCCCC=CC(O)C(N)COP(=O)([O-])OCC[N+](C)(C)C
7.043832
1
SB: 20 mM HEPES, pH 7.4, 150 mM NaCl, 5 mM MgCl2, 5 mM KCl
https://pubmed.ncbi.nlm.nih.gov/20729797/
UTexas
DNA
AGCACGTTGGTTAGGTCAGGTTTGGGTTTCGTGC
NC(Cc1c[nH]c2ccccc12)C(=O)O
5.755228
1
137 mM NaCl, 0.5 mM MgCl2, 2.7 mM KCl, 2 mM KH2PO4, 10 mM Na2HPO4, pH 7.4
https://pubmed.ncbi.nlm.nih.gov/21076782/
UTexas
DNA
AGCAGCACAGAGGTCAGATGCACCAAGCGCAGGGAATTACATTGAAGTGTGGGATTGGCTCCTATGCGTGCTACCGTGAA
O=C(NC(CO)C(O)c1ccc([N+](=O)[O-])cc1)C(Cl)Cl
4.698319
1
100 mM NaCl, 20 mM Tris–HCl, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02 Tween 20, pH 7.6
https://pubmed.ncbi.nlm.nih.gov/21839787/
UTexas
DNA
AGCAGCACAGAGGTCAGATGGGCGGGGAACGGTTATGAACCATACAAAATGATCATTATTCCTATGCGTGCTACCGTGAA
O=C(NC(CO)C(O)c1ccc([N+](=O)[O-])cc1)C(Cl)Cl
null
1
100 mM NaCl, 20 mM Tris–HCl, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02 Tween 20, pH 7.6
https://pubmed.ncbi.nlm.nih.gov/21839787/
UTexas
DNA
AGCAGCACAGAGGTCAGATGACTGAGGGCACGGACAGGAGGGGGAGAGATGGCGTGAGGTCCTATGCGTGCTACCGTGAA
O=C(NC(CO)C(O)c1ccc([N+](=O)[O-])cc1)C(Cl)Cl
4.935542
1
100 mM NaCl, 20 mM Tris–HCl, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02 Tween 20, pH 7.6
https://pubmed.ncbi.nlm.nih.gov/21839787/
UTexas
DNA
AGCAGCACAGAGGTCAGATGATGCGGGTATATGGTGCGAGAAAACAAGGGGCATACTGGACCTATGCGTGCTACCGTGAA
O=C(NC(CO)C(O)c1ccc([N+](=O)[O-])cc1)C(Cl)Cl
5.657577
1
100 mM NaCl, 20 mM Tris–HCl, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2, 0.02 Tween 20, pH 7.6
https://pubmed.ncbi.nlm.nih.gov/21839787/
UTexas
DNA
CCTGCCACGCTCCGCAAGCTTTGTAATTTGTCTGCAGCGGTTCTTGATCGCTGACACCATATTATGAAGATAAGCTTGGCACCCGCATCGT
CC(=NC#N)N(C)Cc1ccc(Cl)nc1
5.302771
1
Not reported
https://pubmed.ncbi.nlm.nih.gov/21306108/
UTexas
DNA
ATACCAGCTTATTCAATTAGCGAGGGCGGTGTCCAACAGCGGTTTTTTCACGAGGAGGTTGGCGGTGGAGATAGTAAGTGCAATCT
CC1OC(OC2C(O)CC(OC3C(O)CC(OC4CCC5(C)C(CCC6C5CC(O)C5(C)C(C7=CC(=O)OC7)CCC65O)C4)OC3C)OC2C)CC(O)C1O
10.30103
1
100 mM NaCl, 20 mM Tris–HCl (pH 7.6), 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2 and 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/23021809/
UTexas
DNA
ATACCAGCTTATTCAATTGGTGGCTGTTGGTCGAGGCTTATTAGTGTAGTCAATGGAGGCAGGCGACGAGATAGTAAGTGCAATCT
CC1OC(OC2C(O)CC(OC3C(O)CC(OC4CCC5(C)C(CCC6C5CC(O)C5(C)C(C7=CC(=O)OC7)CCC65O)C4)OC3C)OC2C)CC(O)C1O
null
1
100 mM NaCl, 20 mM Tris–HCl (pH 7.6), 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2 and 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/23021809/
UTexas
DNA
ATACCAGCTTATTCAATTTACTGGGCTGGGCTTGGATTAGATCACAGTGGAACATACAGGACACACGAGATAGTAAGTGCAATCT
CC1OC(OC2C(O)CC(OC3C(O)CC(OC4CCC5(C)C(CCC6C5CC(O)C5(C)C(C7=CC(=O)OC7)CCC65O)C4)OC3C)OC2C)CC(O)C1O
null
1
100 mM NaCl, 20 mM Tris–HCl (pH 7.6), 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2 and 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/23021809/
UTexas
DNA
AGCGAGGGCGGTGTCCAACAGCGGTTTTTTCACGAGGAGGTTGGCGGTGG
CC1OC(OC2C(O)CC(OC3C(O)CC(OC4CCC5(C)C(CCC6C5CC(O)C5(C)C(C7=CC(=O)OC7)CCC65O)C4)OC3C)OC2C)CC(O)C1O
8.086186
1
100 mM NaCl, 20 mM Tris–HCl (pH 7.6), 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2 and 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/23021809/
UTexas
DNA
GGTGGCTGTTGGTCGAGGCTTATTAGTGTAGTCAATGGAGGCAGGCGACG
CC1OC(OC2C(O)CC(OC3C(O)CC(OC4CCC5(C)C(CCC6C5CC(O)C5(C)C(C7=CC(=O)OC7)CCC65O)C4)OC3C)OC2C)CC(O)C1O
7.356547
1
100 mM NaCl, 20 mM Tris–HCl (pH 7.6), 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2 and 0.02% Tween 20
https://pubmed.ncbi.nlm.nih.gov/23021809/
UTexas
DNA
CACCTAATACGACTCACTATAGCGGATCCGACACGGCATGGTGGGCGTCGTGCTGGCTCGAACAAGCTTGC
CC1(C)SC2C(NC(=O)C(N)c3ccccc3)C(=O)N2C1C(=O)O
8.026872
1
20 mM Tris–HCl, 50 mM NaCl, 5 mM KCl, 5 mM MgCl2, pH 8.0
https://pubmed.ncbi.nlm.nih.gov/22222912/
UTexas
DNA
CACCTAATACGACTCACTATAGCGGATCCGAGCGGGCGGTTGTATAGCGGCTGGCTCGAACAAGCTTGC
CC1(C)SC2C(NC(=O)C(N)c3ccccc3)C(=O)N2C1C(=O)O
7.872895
1
20 mM Tris–HCl, 50 mM NaCl, 5 mM KCl, 5 mM MgCl2, pH 8.0
https://pubmed.ncbi.nlm.nih.gov/22222912/
UTexas
DNA
CGTACGGAATTCGCTAGCCGACGCACAGTCGCTGGTGCGTACCTGGTTGCCGTTGTGTGGATCCGAGCTCCACGTG
CN(C)C1C(=O)C(C(N)=O)=C(O)C2(O)C(=O)C3=C(O)c4c(O)cccc4C(C)(O)C3C(O)C12
8.327902
1
20 mM Tris–HCl, 50 mM NaCl, 5 mM KCl, 1 mM MgCl2, pH 7.2
https://pubmed.ncbi.nlm.nih.gov/24011458/
UTexas
DNA
CATCTGCAGTGTGGCACCATGTCACCGGTTCGCGGTATGTGGTCGCAGGATGGTGTTCACGTGCTGAGCGTGAATTCGC
NC(=O)OCC1N=C(N)N2CCC(O)(O)C23NC(N)=NC13
null
1
20 mM PB, pH 7.35, 120 mM KCl, 1 mM CaCl2, and 1 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/23480547/
UTexas
DNA
CATCTGCAGTGTGGCACCATGGAATACGACATTGTTGGCTGTTCTTGGTTATGCGGTTTTTCGTGCTGAGCGTGAATTCGC
NC(=O)OCC1N=C(N)N2CCC(O)(O)C23NC(N)=NC13
7.016058
1
20 mM PB, pH 7.35, 120 mM KCl, 1 mM CaCl2, and 1 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/23480547/
UTexas
DNA
CATCTGCAGTGTGGCACCATGGCGGGAAAGGGTCCGGTTGTGATGTTGTTTCTGTTTTGGTCGTGCTGAGCGTGAATTCGC
NC(=O)OCC1N=C(N)N2CCC(O)(O)C23NC(N)=NC13
null
1
20 mM PB, pH 7.35, 120 mM KCl, 1 mM CaCl2, and 1 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/23480547/
UTexas
DNA
CATCTGCAGTGTGGCACCATGTACGCCGCGGTGTACCTCCGCGTGTTACGCTACTTTCTGTGCGTGCGAGCGTGAATTCGC
O=C(CO)NC1C(O)CC(O)(C(=O)O)OC1C(O)C(O)CO
8.175224
1
Not reported
https://pubmed.ncbi.nlm.nih.gov/23777704/
UTexas
DNA
CATCTGCAGTGTGGCACCATGAGGCTCTCGATAAGTATAGACACTGAATTTCGAGGTTCTTCGTGCTGAGCGTGAATTCGC
O=C(CO)NC1C(O)CC(O)(C(=O)O)OC1C(O)C(O)CO
8.21254
1
Not reported
https://pubmed.ncbi.nlm.nih.gov/23777704/
UTexas
DNA
CATCTGCAGTGTGGCACCATGATCGCGCATCCTCGGTCGGCGGAGTCGGTGGTGTGTTCTCGTGCTGAGCGTGAATTCGC
O=C(CO)NC1C(O)CC(O)(C(=O)O)OC1C(O)C(O)CO
8.339135
1
Not reported
https://pubmed.ncbi.nlm.nih.gov/23777704/
UTexas
DNA
CATCTGCAGTGTGGCACCATGGGATCCGGGAGGGACGTTTTCTAGTACGGTCCGTTGGGTACGTGCTGAGCGTGAATTCGC
O=C(CO)NC1C(O)CC(O)(C(=O)O)OC1C(O)C(O)CO
8.187755
1
Not reported
https://pubmed.ncbi.nlm.nih.gov/23777704/
UTexas
DNA
CATCTGCAGTGTGGCACCATGTCCGTAGTGCTTTGTTTGTTGTGTGCTAGGTAGTGTTCTTCGTGCTGAGCGTGAATTCGC
O=C(CO)NC1C(O)CC(O)(C(=O)O)OC1C(O)C(O)CO
7.134896
1
Not reported
https://pubmed.ncbi.nlm.nih.gov/23777704/
UTexas
DNA
TGTAATTTGTCTGCAGCGGTTCTTGATCGCTGACACCATATTATGAAGA
CC(=NC#N)N(C)Cc1ccc(Cl)nc1
8.302771
1
Not reported
https://pubmed.ncbi.nlm.nih.gov/25340286/
UTexas
DNA
GAATGGATCCACATCCATGGATGGGCAATGCGGGGTGGAGAATGGTTGCCGCACTTCGGCTTCACTGCAGACTTGACGAAGCTTGACGAA
CC12CCC(=O)C=C1CCC1C2C(O)CC2(C)C1CCC2(O)C(=O)CO
4.793174
1
50 mM Tris (Promega, ≥99.9 %), 137 mM NaCl (Sigma >99.5 %), 5 mM MgCl2 (Fluka, ≥98 %), pH 7.4
https://pubmed.ncbi.nlm.nih.gov/24880870/
UTexas
DNA
ACCGACCGTGCTGGACTCTGGACTGTTGTGGTATTATTTTTGGTTGTGCAGTATGAGCGAGCGTTGCG
[Cd]
7.462181
1
50 mM HEPES, 50 mM NaCl, 5 mM KCl, 5 mM MgCl2, pH 7.2
https://pubmed.ncbi.nlm.nih.gov/24496116/
UTexas
DNA
AGCCTCGTCTGTTCTCCCGGCAGTGTGGGCGAATCTATGCGTACCGTTCGATATCGTGGGGAAGACAAGCAGACGT
CC1Cc2c(Cl)cc(C(=O)NC(Cc3ccccc3)C(=O)O)c(O)c2C(=O)O1
6.537602
1
10 mM Na2HPO4, 2 mM KH2PO4, 2.7 mM KCl, 137 mM NaCl, pH 7.4
https://pubmed.ncbi.nlm.nih.gov/25153252/
UTexas
DNA
AGCCTCGTCTGTTCTCCCGGCGCATGATCATTCGGTGGGTAAGGTGGTGGTAACGTTGGGGAAGACAAGCAGACGT
CC1Cc2c(Cl)cc(C(=O)NC(Cc3ccccc3)C(=O)O)c(O)c2C(=O)O1
6.958607
1
10 mM Na2HPO4, 2 mM KH2PO4, 2.7 mM KCl, 137 mM NaCl, pH 7.4
https://pubmed.ncbi.nlm.nih.gov/25153252/
UTexas
DNA
CGTACGGAATTCGCTAGCGGGCGGACGCTAGGTGGTGATGCTGTGCTACACGTGTTGTGGATCCGAGCTCCACGTG
[Pd+2]
5.337242
1
HEPES (0.1 M) at pH 8.02
https://pubmed.ncbi.nlm.nih.gov/26514743/
UTexas
DNA
CGTACGGAATTCGCTAGCACAAGGGGTGCAGGGGTCCGCGATTGTGACTGTGTGTGCGGGATCCGAGCTCCACGTG
[Pd+2]
null
1
HEPES (0.1 M) at pH 8.02
https://pubmed.ncbi.nlm.nih.gov/26514743/
UTexas
DNA
CGTACGGAATTCGCTAGCCCCCGCTGCCCGTGTTCCGTCCTCCCTTGCTGTGTGTGCGGGATCCGAGCTCCACGTG
[Pd+2]
null
1
HEPES (0.1 M) at pH 8.02
https://pubmed.ncbi.nlm.nih.gov/26514743/
UTexas
DNA
GAGGCAGCACTTCACACGATCTGTGAAGTTTTTGTCATGGTTTGGGGGTGGTAGGGGTGTTGTCTGCGTAATGACTGTAGTGATG
C=C(C=O)CC1CC(O)C2(C)OC3CC4OC5CC6(C)OC7(C)CCC8OC9CC%10(C)OC%11C(C)=CC(=O)OC%11CC%10OC9CC(C)C8OC7CC6OC5(C)CC=CC4OC3CC2O1
5.316053
1
20 mM Hepes, 120 mM sodium chloride, 5 mM potassium chloride, 1 mM calcium chloride, and 1 mM magnesium chloride
https://pubmed.ncbi.nlm.nih.gov/28058132/
UTexas
DNA
CTCGTCTCGTTCTCTCAGTCTTCTTCTGGCTTGGTGGTTGGTGTGTCTGCTGATTTGGTAGACACGAAGAAGAAGGAGGA
COc1cc2c(c3oc(=O)c4c(c13)CCC4=O)C1C=COC1O2
7.297139
1
1X binding buffer (1X BB; 5 mM MgCl2 in Dulbecco's phosphate buffered saline, pH 7.4 ± 0.2)
https://pubmed.ncbi.nlm.nih.gov/27990137/
UTexas
DNA
CTCGTCTCGTTCTCTCAGTCTGGTTAGCACGGGACCCAGGCTATTGGCAACTTCTAGTCCGACACGAAGAAGAAGGAGGA
COc1cc2c(c3oc(=O)c4c(c13)CCC4=O)C1C=COC1O2
7.316143
1
1X binding buffer (1X BB; 5 mM MgCl2 in Dulbecco's phosphate buffered saline, pH 7.4 ± 0.2)
https://pubmed.ncbi.nlm.nih.gov/27990137/
UTexas
DNA
CTCGTCTCGTTCTCTCAGTCGGACGAAGAGAGGGGGAGAGGGGGACGGAGCTGCTAAGGTGACACGAAGAAGAAGGAGGA
COc1cc2c(c3oc(=O)c4c(c13)CCC4=O)C1C=COC1O2
7.070479
1
1X binding buffer (1X BB; 5 mM MgCl2 in Dulbecco's phosphate buffered saline, pH 7.4 ± 0.2)
https://pubmed.ncbi.nlm.nih.gov/27990137/
UTexas
DNA
GGGAGGACGAAGCGGAACTTAGTGCGCTTGAGGCTCGATCAGGAGATCTGGAGTCGTGGGCACTCACAACGATACGTGGTCAGAAGACACGCCCGAC
CC1(C)SC2C(NC(=O)Cc3ccccc3)C(=O)N2C1C(=O)O
null
1
Phosphate buffer 0.1 M pH 7 containing 5 mM of MgCl3
https://pubmed.ncbi.nlm.nih.gov/27837823/
UTexas
DNA
AGCAGCACAGAGGTCAGATGCAATAAGCGATGCGCCCTCGCCTGGGGGCCTAGTCCTCTCCTATGCGTGCTACCGTGAA
O=C(NC(CO)C(O)c1ccc([N+](=O)[O-])cc1)C(Cl)Cl
7.49485
1
100 mM of NaCl, 20 mM of Tris–HCl, 2 mM of MgCl2, 5 mM of KCl, 1 mM of CaCl2, and 0.02 % aqueous solution of Tween 20, pH 7.6
https://pubmed.ncbi.nlm.nih.gov/27613616/
UTexas
DNA
AGCAGCACAGAGGTCAGATGGCAGGGCACGCGGGTCGTCCACTGGAGATTACTGCTGCGCCCTATGCGTGCTACCGTGAA
O=C(NC(CO)C(O)c1ccc([N+](=O)[O-])cc1)C(Cl)Cl
6.993021
1
101 mM of NaCl, 20 mM of Tris–HCl, 2 mM of MgCl2, 5 mM of KCl, 1 mM of CaCl2, and 0.02 % aqueous solution of Tween 20, pH 7.6
https://pubmed.ncbi.nlm.nih.gov/27613616/
UTexas
DNA
AGCAGCACAGAGGTCAGATGGTCTCTACTAAAAGTTTTGATCATACCGTTCACTAATTGACCTATGCGTGCTACCGTGAA
CC(CCc1ccc(O)cc1)NCC(O)c1ccc(O)cc1
7.26584
1
50 mM Tris-HCl, 5 mM KCl, 100 mM NaCl, 1 mM MgCl2, pH 7.4
https://pubmed.ncbi.nlm.nih.gov/28224901/
UTexas
DNA
ATGCGGATCCCGCGCGGGTCTGAGGAGTGCGCGGTGCCAGTGAGTGCGCGAAGCTTGCGC
CC1(C)SC2C(NC(=O)Cc3ccccc3)C(=O)N2C1C(=O)O
6.416801
1
1x binding buffer (20 mM Tris) and 2x binding buffer (40 mM Tris)
https://pubmed.ncbi.nlm.nih.gov/28522308/
UTexas
DNA
CGACCAGCTCATTCCTCACCACGAGAAAGGAGCTCGATGAACTGCGACGGATTCGACCCTATGCGAGTAGGTGGTGGATCCGAGCTCACCAGT
CC1=C(O)C(=O)C(C)O1
8.958607
1
100 mM NaCl, 20 mM Tris-HCl [pH 7.6], 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2
https://pubmed.ncbi.nlm.nih.gov/30513671/
UTexas
DNA
ATACCAGCTTATTCAATTCTACCAGCTTTGAGGCTCGATCCAGCTTATTCAATTATACCAGCTTATTCAATTATACCAGCACAATCGTAATCAGTTAG
CC1CCCC(=O)CCCC=Cc2cc(O)cc(O)c2C(=O)O1
7.818156
1
50 mM Tris, 100 mM NaCl, 5 mM KCl, 2 mM MgCl2, 1 mM CaCl2, 0.02% vol Tween 20, pH 7.4
https://pubmed.ncbi.nlm.nih.gov/30346760/
UTexas
DNA
ACCGTCTGAGCGATTCGTACTTTATTCGGGAAGGGTATCAGCGGGG
CCNc1nc(Cl)nc(NC(C)C)n1
8.431798
1
100 mM NaCl, 20 mM Tris-HCl, and 5 mM MgCl2, pH 7.4
https://pubmed.ncbi.nlm.nih.gov/30411044/
UTexas
DNA
TGTACCGTCTGAGCGATTCGTACTTTATTCGGGAAGGGTATCAGCGGGGTTCAACAAGCCAGTCAGTGTTAAGGAGTGC
CCNc1nc(Cl)nc(NC(C)C)n1
null
1
100 mM NaCl, 20 mM Tris-HCl, and 5 mM MgCl2, pH 7.4
https://pubmed.ncbi.nlm.nih.gov/30411044/
UTexas
DNA
ATACCAGCTTATTCAATTCAGGAAGACAACTCCGACTAGAATTGATAATCAAGAATTCGTCTGGGGGGAATGTGCGAGATAGTAAGTGCAATCT
CC1(C)SC2C(NC(=O)C(NC(=O)N3CCNC3=O)c3ccccc3)C(=O)N2C1C(=O)O
7.259637
1
50 mM Tris, pH 7.5, 150 mM NaCl and 2 mM MgCl2
https://pubmed.ncbi.nlm.nih.gov/32029106/
UTexas
DNA
GCTGTGTGACTCCTGCAAACTACTGGTGTTCCTTGCCCTGTTTCAATAAATCGTGTGTGCCGCAGCTGTATCTTGTCTCC
C=CCC1C=C(C)CC(C)CC(OC)C2OC(O)(C(=O)C(=O)N3CCCCC3C(=O)OC(C(C)=CC3CCC(O)C(OC)C3)C(C)C(O)CC1=O)C(C)CC2OC
7.248336
1
Binding buffer (20 mM Tris−HCl, 100 mM NaCl, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2 and 0.02% Tween 20, pH 7.6)
https://pubmed.ncbi.nlm.nih.gov/31499431/
UTexas
DNA
GCTGTGTGACTCCTGCAAACTACTGGTGTTCCTTGCCCTGTTTCAATAAATCGTGTGTGCCGCAGCTGTATCTTGTCTCC
C=CCC1C=C(C)CC(C)CC(OC)C2OC(O)(C(=O)C(=O)N3CCCCC3C(=O)OC(C(C)=CC3CCC(O)C(OC)C3)C(C)C(O)CC1=O)C(C)CC2OC
6.744727
1
Binding buffer (20 mM Tris−HCl, 100 mM NaCl, 2 mM MgCl2, 5 mM KCl, 1 mM CaCl2 and 0.02% Tween 20, pH 7.6)
https://pubmed.ncbi.nlm.nih.gov/31499431/
UTexas
DNA
ATACCAGCTTATTCAATTATTCAATTCGAGGCGGGTGGGTGGGTTGAATGATAGTAAGTGCAATCT
Nc1ncnc2c1ncn2C1OC2COP(=O)(O)OC2C1O
3
0
Tris⋅Cl (20 mm, pH 7.5), NaCl (100 mm), KCl (5 mm), MgCl2 (1 mm) and CaCl2 (1 mm; selection buffer, SB)
https://pubmed.ncbi.nlm.nih.gov/31099939/
UTexas
DNA
GCATCAGTCCACTCGTGAGGTCGACTGATGAGGCTCGATCAGGAGCGCCGCTCGATCGCACTTTCACAGGATAGTAGTTGGTAGCGACCTCTGCTAGA
NC(CCC(=O)O)C(=O)O
4.920819
1
Selection buffer (SB buffer) [100 mM NaCl, 20 mM Tris–HCl, 5 mM KCl, 2 mM MgCl2, 1 mM CaCl2, pH 7.6]
https://pubmed.ncbi.nlm.nih.gov/34783880/
UTexas
DNA
GCATCAGTCCACTCGTGAGGTCGACTGATGAGGCTCGAT
NC(CCC(=O)O)C(=O)O
null
1
Selection buffer (SB buffer) [100 mM NaCl, 20 mM Tris–HCl, 5 mM KCl, 2 mM MgCl2, 1 mM CaCl2, pH 7.6]
https://pubmed.ncbi.nlm.nih.gov/34783880/
UTexas
RNA
CGGAUGGAAGGCGUGGUUAGAAUCCAAUAGCCCAUCCG
NC(N)=NCCCC(N)C(=O)O
3.869666
0
320 mM NaCl, 50 mM Tris-HCI, pH 7.5, and 5 mM MgCI,
https://pubmed.ncbi.nlm.nih.gov/8523524/
UTexas
RNA
CGGAUGGAAGGCGUGGUUAGAAUCCAAUAGCCCAUCCG
NC(N)=NCCCC(N)C(=O)O
3.88941
0
320 mM NaCl, 50 mM Tris-HCI, pH 7.5, and 5 mM MgCI,
https://pubmed.ncbi.nlm.nih.gov/8523524/
UTexas
RNA
GGCGUAGUGAUUAUGAAUCGUGUGCUAAUACACGCC
N#N
null
1
Not Reported
https://pubmed.ncbi.nlm.nih.gov/24682172/
UTexas
RNA
GGGUUGGGAAGAAACUGUGGCACUUCGGUGCCAGCAACCC
Nc1ncnc2c1ncn2C1OC(COP(=O)(O)OP(=O)(O)OP(=O)(O)O)C(O)C1O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/7687750/
Ribocentre
RNA
GACGAGAAGGAGCGCUGGUUCUACUAGCAGGUAGGUCACUCGUC
NC(N)=NCCCC(N)C(=O)O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/10786843/
Ribocentre
RNA
CAGUGAGGAAGAGAAAGCUCGCUGGAUUGGCUG
NC(=O)NCCCC(N)C(=O)O
null
1
null
https://pubs.acs.org/doi/10.1021/ja00084a010
Ribocentre
RNA
GACGAGAAGGAGUGCUGGUUAUACUAGCGGUUAGGUCACUCGUC
NC(=O)NCCCC(N)C(=O)O
null
1
null
https://pubs.acs.org/doi/10.1021/ja00084a010
Ribocentre
RNA
AGUGAUACCAGCAUCGUCUUGAUGCCCUUGGCAGCACU
Cn1c(=O)c2[nH]cnc2n(C)c1=O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/7510417/
Ribocentre
RNA
AAGUGAUACCAGCAUCGUCUUGAUGCCCUUGGCAGCACUUCA
Cn1c(=O)c2[nH]cnc2n(C)c1=O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/7510417/
Ribocentre
RNA
GGCAUACCAGCCGAAAGGCCCUUGGCAGCGCC
Cn1c(=O)c2[nH]cnc2n(C)c1=O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/7510417/
Ribocentre
RNA
GGACUGGGCGAGAAGUUUAGUCC
NCC1OC(OC2C(CO)OC(OC3C(O)C(N)CC(N)C3OC3OC(CN)C(O)C(O)C3N)C2O)C(N)C(O)C1O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/9383458/
Ribocentre
RNA
GGCACGAGGUUUAGCUACACUCGUGCC
NCC1OC(OC2C(N)CC(N)C(OC3OC(CO)C(O)C(N)C3O)C2O)C(N)CC1O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/9383430/
Ribocentre
RNA
ACUUGGUUUAGGUAAUGAGU
NCC1OC(OC2C(N)CC(N)C(OC3OC(CO)C(O)C(N)C3O)C2O)C(N)CC1O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/9383430/
Ribocentre
RNA
GGGUGACUUGGUUUAGGUAAUGAGUCACCC
NCC1OC(OC2C(N)CC(N)C(OC3OC(CO)C(O)C(N)C3O)C2O)C(N)CC1O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/9383430/
Ribocentre
RNA
CGGAUGGAAGGCGUGGUUAGAAUCCAAUAGCCCAUCCG
NC(N)=NCCCC(N)C(=O)O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/8523524/
Ribocentre
RNA
GGAGCUCAGCCUUCACUGCAUGAUAAACCGAUGCUGGGCGAUUCUCCUGAAGUAGGGGAAGAGUUGUCAUGUAUGGGGGCACCACGGUCGGAUCCUG
NC(N)=NCCCC(N)C(=O)O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/8604334/
Ribocentre
RNA
CAGCGAGGAAGAGAAAGCUCGCUGGAUGGGCUG
NC(N)=NCCCC(N)C(=O)O
null
1
null
https://pubmed.ncbi.nlm.nih.gov/8650546/
Ribocentre
RNA
GGCGUGUAGGAUAUGCUUCGGCAGAAGGACACGCC
Cc1cc2nc3c(=O)[nH]c(=O)nc-3n(CC(O)C(O)C(O)COP(=O)(O)O)c2cc1C
null
1
null
https://pubmed.ncbi.nlm.nih.gov/8642604/
Ribocentre