Datasets:

marin-dna
/

evals_complex_traits

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Split (2)

train · 11.6k rows

chrom stringclasses 12 values	pos int64 36.1k 249M	ref stringclasses 4 values	alt stringclasses 4 values	label bool 2 classes	subset stringclasses 8 values	match_group int64 0 2.16k	rsid stringlengths 3 15	pip float64 0 1	traits stringclasses 279 values	MAF float64 0 0.5	ld_score float64 1.01 3.79k	consequence stringclasses 13 values	consequence_cre stringclasses 29 values	exon_closest_pc_gene_id stringlengths 15 15	distance_exon_pc int64 0 1.68M	exon_closest_nc_gene_id stringlengths 15 15	distance_exon_nc int64 0 507k	distance_exon int64 0 507k	exon_closest_gene_id stringlengths 15 15	consequence_final stringclasses 28 values	tss_closest_pc_gene_id stringlengths 15 15	distance_tss_pc int64 0 1.69M	tss_closest_nc_gene_id stringlengths 15 15	distance_tss_nc int64 0 531k	distance_tss int64 0 531k	tss_closest_gene_id stringlengths 15 15	consequence_group stringclasses 8 values	distance_tss_pc_bin stringclasses 4 values	distance_exon_pc_bin stringclasses 7 values
13	107,911,542	G	C	false	distal	540	rs816982	0.000875		0.2646	53.982	intron_variant	dELS_flank	ENSG00000204442	44,045	ENSG00000286343	21,485	21,485	ENSG00000286343	dELS_flank	ENSG00000204442	44,045	ENSG00000274718	41,158	41,158	ENSG00000274718	distal	NA	NA
13	108,780,146	G	A	false	tss_proximal	550	rs72668542	0.000056		0.16108	65.985	intron_variant	dELS	ENSG00000041515	5,488	ENSG00000041515	93	93	ENSG00000041515	tss_proximal	ENSG00000041515	150,534	ENSG00000041515	603	603	ENSG00000041515	tss_proximal	tss_prox:b2	tss_prox:b2
13	110,226,292	T	G	true	distal	531	rs544012	0.99711	Plt	0.26519	19.308	intron_variant	dELS	ENSG00000187498	9,408	ENSG00000187498	12,276	9,408	ENSG00000187498	dELS	ENSG00000187498	16,401	ENSG00000187498	13,705	13,705	ENSG00000187498	distal	NA	NA
13	110,387,437	G	C	false	distal	532	rs4359307	0.00035		0.28309	42.161	intron_variant	dELS	ENSG00000134871	25,221	ENSG00000134871	42,613	25,221	ENSG00000134871	dELS	ENSG00000134871	37,364	ENSG00000134871	42,613	37,364	ENSG00000134871	distal	NA	NA
13	110,388,334	G	A	true	distal	532	rs11838776	0.99505	DBP	0.27761	78.738	intron_variant	dELS	ENSG00000134871	26,118	ENSG00000134871	41,716	26,118	ENSG00000134871	dELS	ENSG00000134871	36,467	ENSG00000134871	41,716	36,467	ENSG00000134871	distal	NA	NA
13	110,516,647	G	C	false	distal	534	rs9588182	0.000069		0.26003	57.803	intergenic_variant	dELS	ENSG00000134871	3,437	ENSG00000134871	3,619	3,437	ENSG00000134871	dELS	ENSG00000134871	10,178	ENSG00000289010	4,234	4,234	ENSG00000289010	distal	NA	NA
13	110,517,611	A	T	false	distal	534	rs1325812	0.000105		0.24112	62.513	intergenic_variant	dELS	ENSG00000134871	4,401	ENSG00000289010	2,931	2,931	ENSG00000289010	dELS	ENSG00000134871	11,142	ENSG00000289010	3,270	3,270	ENSG00000289010	distal	NA	NA
13	110,724,321	T	C	false	distal	533	rs7338458	0.00538		0.23281	136.56	downstream_gene_variant	dELS	ENSG00000153487	981	ENSG00000134905	10,717	981	ENSG00000153487	dELS	ENSG00000153487	8,883	ENSG00000134905	10,717	8,883	ENSG00000153487	distal	NA	NA
13	110,724,441	A	G	false	distal	533	rs7337126	0.005616		0.23281	136.57	intergenic_variant	dELS	ENSG00000153487	1,101	ENSG00000134905	10,837	1,101	ENSG00000153487	dELS	ENSG00000153487	9,003	ENSG00000134905	10,837	9,003	ENSG00000153487	distal	NA	NA
13	111,168,553	G	C	false	distal	542	rs12019889	0.001683		0.20957	69.218	intron_variant	dELS_flank	ENSG00000102606	9,463	ENSG00000274614	13,557	9,463	ENSG00000102606	dELS_flank	ENSG00000102606	14,814	ENSG00000274614	14,138	14,138	ENSG00000274614	distal	NA	NA
13	112,097,980	C	A	false	distal	523	rs143217765	0.000025		0.022744	9.2088	intron_variant	dELS	ENSG00000182968	26,273	ENSG00000224243	335	335	ENSG00000224243	dELS	ENSG00000182968	30,830	ENSG00000229520	8,901	8,901	ENSG00000229520	distal	NA	NA
13	112,097,981	C	T	false	distal	523	rs117385037	0.000025		0.022923	9.1914	intron_variant	dELS	ENSG00000182968	26,274	ENSG00000224243	334	334	ENSG00000224243	dELS	ENSG00000182968	30,831	ENSG00000229520	8,900	8,900	ENSG00000229520	distal	NA	NA
13	112,558,038	T	C	false	distal	548	rs2296535	0.00003		0.27779	169.93	intron_variant	dELS_flank	ENSG00000126216	157	ENSG00000126216	157	157	ENSG00000126216	dELS_flank	ENSG00000126216	9,865	ENSG00000126216	11,834	9,865	ENSG00000126216	distal	NA	NA
13	112,825,506	A	G	true	missense_variant	537	rs368865	1	HbA1c	0.27449	46.936	missense_variant	missense_variant	ENSG00000068650	0	ENSG00000068650	0	0	ENSG00000068650	missense_variant	ENSG00000068650	30,414	ENSG00000068650	10,736	10,736	ENSG00000068650	missense_variant	NA	NA
13	112,981,842	C	T	true	distal	533	rs9549328	0.976125	PP	0.22757	86.46	intron_variant	dELS	ENSG00000126217	2,083	ENSG00000289354	11,904	2,083	ENSG00000126217	dELS	ENSG00000126217	2,529	ENSG00000289354	12,284	2,529	ENSG00000126217	distal	NA	NA
13	113,016,333	G	A	false	distal	535	rs9549636	0.00021		0.3334	47.118	intron_variant	dELS	ENSG00000126217	1,486	ENSG00000126217	1,486	1,486	ENSG00000126217	dELS	ENSG00000126217	8,330	ENSG00000269376	6,661	6,661	ENSG00000269376	distal	NA	NA
13	113,220,766	C	T	true	distal	548	rs56129102	0.999455	MCH,MCV	0.27532	35.374	intron_variant	dELS_flank	ENSG00000139842	1,717	ENSG00000139842	953	953	ENSG00000139842	dELS_flank	ENSG00000139842	11,152	ENSG00000139842	10,882	10,882	ENSG00000139842	distal	NA	NA
13	113,272,893	G	T	true	distal	534	rs9604045	1	ALP,AST,ApoA,CRP,HDLC,Neutro,WBC	0.25095	26.569	intergenic_variant	dELS	ENSG00000139842	5,784	ENSG00000232662	3,722	3,722	ENSG00000232662	dELS	ENSG00000185896	24,345	ENSG00000232662	3,722	3,722	ENSG00000232662	distal	NA	NA
13	113,533,799	T	C	false	distal	535	rs2260728	0.000158		0.32536	97.4	intron_variant	dELS	ENSG00000150403	245	ENSG00000276248	3,177	245	ENSG00000150403	dELS	ENSG00000150403	14,503	ENSG00000276248	6,538	6,538	ENSG00000276248	distal	NA	NA
13	113,849,020	T	C	true	distal	535	rs6602909	0.93971	AST	0.32547	82.966	intron_variant	dELS	ENSG00000183087	969	ENSG00000183087	969	969	ENSG00000183087	dELS	ENSG00000183087	15,055	ENSG00000233695	6,529	6,529	ENSG00000233695	distal	NA	NA
15	22,712,046	C	T	false	distal	688	rs12902666	0.00003		0.058411	15.317	intergenic_variant	TF_flank	ENSG00000170113	61,016	ENSG00000283273	2,295	2,295	ENSG00000283273	TF_flank	ENSG00000170113	61,016	ENSG00000283273	2,295	2,295	ENSG00000283273	distal	NA	NA
15	22,825,366	C	G	false	3_prime_UTR_variant	658	rs1059774	0.000017		0.39068	27.023	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000170113	0	ENSG00000170113	0	0	ENSG00000170113	3_prime_UTR_variant	ENSG00000140157	13,278	ENSG00000140157	13,277	13,277	ENSG00000140157	3_prime_UTR_variant	NA	NA
15	22,826,754	G	C	false	3_prime_UTR_variant	658	rs6606820	0.000017		0.40634	26.937	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000170113	0	ENSG00000170113	677	0	ENSG00000170113	3_prime_UTR_variant	ENSG00000140157	11,890	ENSG00000140157	11,889	11,889	ENSG00000140157	3_prime_UTR_variant	NA	NA
15	22,903,836	C	T	true	missense_variant	617	rs7170637	0.99452	eBMD	0.16053	14.513	missense_variant	missense_variant	ENSG00000273749	0	ENSG00000273749	0	0	ENSG00000273749	missense_variant	ENSG00000273749	13,476	ENSG00000273749	1,603	1,603	ENSG00000273749	missense_variant	NA	NA
15	22,909,199	T	C	false	missense_variant	629	rs142727980	0.000476		0.006084	7.4434	missense_variant	missense_variant	ENSG00000273749	0	ENSG00000273749	0	0	ENSG00000273749	missense_variant	ENSG00000273749	8,113	ENSG00000273749	3,186	3,186	ENSG00000273749	missense_variant	NA	NA
15	22,965,507	T	C	false	distal	668	rs8032564	0.000018		0.48964	48.732	intron_variant	dELS	ENSG00000273749	14,779	ENSG00000273749	14,779	14,779	ENSG00000273749	dELS	ENSG00000273749	14,844	ENSG00000273749	14,840	14,840	ENSG00000273749	distal	NA	NA
15	22,965,749	C	T	false	distal	668	rs11853131	0.000017		0.49339	48.35	intron_variant	dELS	ENSG00000273749	14,537	ENSG00000273749	14,537	14,537	ENSG00000273749	dELS	ENSG00000273749	14,602	ENSG00000273749	14,598	14,598	ENSG00000273749	distal	NA	NA
15	22,967,498	C	T	false	distal	668	rs12441090	0.00002		0.49717	49.286	intron_variant	dELS	ENSG00000273749	12,788	ENSG00000273749	12,788	12,788	ENSG00000273749	dELS	ENSG00000273749	12,853	ENSG00000273749	12,849	12,849	ENSG00000273749	distal	NA	NA
15	22,967,581	C	T	false	distal	668	rs12441061	0.00002		0.49711	49.292	intron_variant	dELS	ENSG00000273749	12,705	ENSG00000273749	12,705	12,705	ENSG00000273749	dELS	ENSG00000273749	12,770	ENSG00000273749	12,766	12,766	ENSG00000273749	distal	NA	NA
15	22,968,432	T	C	false	distal	668	rs7164295	0.000027		0.49239	48.74	intron_variant	dELS	ENSG00000273749	11,854	ENSG00000273749	11,854	11,854	ENSG00000273749	dELS	ENSG00000273749	11,919	ENSG00000273749	11,915	11,915	ENSG00000273749	distal	NA	NA
15	23,072,529	T	C	false	distal	646	rs6606793	0.00002		0.37044	69.203	intergenic_variant	CA_flank	ENSG00000275835	32,956	ENSG00000276172	10,564	10,564	ENSG00000276172	CA_flank	ENSG00000275835	32,956	ENSG00000276172	10,564	10,564	ENSG00000276172	distal	NA	NA
15	23,449,521	A	C	false	distal	635	rs11629636	0.000029		0.13716	82.615	intergenic_variant	dELS_flank	ENSG00000174450	2,277	ENSG00000174450	2,286	2,277	ENSG00000174450	dELS_flank	ENSG00000174450	2,277	ENSG00000174450	2,286	2,277	ENSG00000174450	distal	NA	NA
15	23,450,336	A	G	false	distal	635	rs2344903	0.000029		0.1372	82.618	intergenic_variant	dELS_flank	ENSG00000174450	3,092	ENSG00000174450	3,101	3,092	ENSG00000174450	dELS_flank	ENSG00000174450	3,092	ENSG00000174450	3,101	3,092	ENSG00000174450	distal	NA	NA
15	23,565,696	C	T	true	5_prime_UTR_variant	630	rs184950120	0.999335	Age_at_Menarche	0.00308	2.3382	5_prime_UTR_variant	5_prime_UTR_variant	ENSG00000179455	0	ENSG00000260978	0	0	ENSG00000179455	5_prime_UTR_variant	ENSG00000179455	15	ENSG00000179455	17	15	ENSG00000179455	5_prime_UTR_variant	NA	NA
15	24,593,312	G	T	false	distal	652	rs6576352	0.000016		0.4742	929.6	intron_variant	intron_variant	ENSG00000185823	82,462	ENSG00000259905	5,532	5,532	ENSG00000259905	intron_variant	ENSG00000185823	82,462	ENSG00000259905	5,714	5,714	ENSG00000259905	distal	NA	NA
15	24,764,448	G	A	false	distal	637	rs11855822	0.000038		0.1665	141.44	intron_variant	dELS_flank	ENSG00000128739	59,198	ENSG00000259905	11,636	11,636	ENSG00000259905	dELS_flank	ENSG00000128739	59,198	ENSG00000128739	59,188	59,188	ENSG00000128739	distal	NA	NA
15	24,766,575	A	G	false	distal	637	rs35121347	0.00004		0.16635	141.58	intron_variant	dELS_flank	ENSG00000128739	57,071	ENSG00000259905	13,763	13,763	ENSG00000259905	dELS_flank	ENSG00000128739	57,071	ENSG00000128739	57,061	57,061	ENSG00000128739	distal	NA	NA
15	24,861,105	T	C	false	distal	675	rs10048019	0.000013		0.47214	81.453	intron_variant	dELS	ENSG00000128739	4,388	ENSG00000128739	4,388	4,388	ENSG00000128739	dELS	ENSG00000128739	4,553	ENSG00000128739	4,503	4,503	ENSG00000128739	distal	NA	NA
15	24,884,204	C	G	false	distal	650	rs12911390	0.000013		0.11784	55.173	intron_variant	intron_variant	ENSG00000128739	2,311	ENSG00000128739	2,311	2,311	ENSG00000128739	intron_variant	ENSG00000128739	27,652	ENSG00000241061	25,620	25,620	ENSG00000241061	distal	NA	NA
15	24,884,579	C	A	false	distal	650	rs12912072	0.000014		0.11789	55.066	intron_variant	intron_variant	ENSG00000128739	1,936	ENSG00000128739	1,936	1,936	ENSG00000128739	intron_variant	ENSG00000128739	28,027	ENSG00000241061	25,245	25,245	ENSG00000241061	distal	NA	NA
15	24,884,587	T	C	false	distal	650	rs12916812	0.000014		0.11783	55.015	intron_variant	intron_variant	ENSG00000128739	1,928	ENSG00000128739	1,928	1,928	ENSG00000128739	intron_variant	ENSG00000128739	28,035	ENSG00000241061	25,237	25,237	ENSG00000241061	distal	NA	NA
15	24,950,585	A	G	false	distal	632	rs220026	0.000114		0.059471	116.82	intron_variant	dELS_flank	ENSG00000128739	4,349	ENSG00000273173	4,418	4,349	ENSG00000128739	dELS_flank	ENSG00000128739	4,349	ENSG00000273173	4,418	4,349	ENSG00000128739	distal	NA	NA
15	25,184,161	G	A	false	tss_proximal	693	rs137967466	0.000011		0.014153	21.71	intron_variant	intron_variant	ENSG00000114062	149,566	ENSG00000224078	85	85	ENSG00000224078	tss_proximal	ENSG00000114062	161,869	ENSG00000200726	144	144	ENSG00000200726	tss_proximal	tss_prox:b2	tss_prox:b2
15	25,184,301	G	C	false	tss_proximal	693	rs72546346	0.000014		0.012498	50.694	intron_variant	intron_variant	ENSG00000114062	149,426	ENSG00000200726	4	4	ENSG00000200726	tss_proximal	ENSG00000114062	161,729	ENSG00000200726	4	4	ENSG00000200726	tss_proximal	tss_prox:b2	tss_prox:b2
15	25,314,328	A	T	false	distal	654	rs182455946	0.000012		0.005186	6.1946	intron_variant	intron_variant	ENSG00000114062	19,399	ENSG00000224078	23,682	19,399	ENSG00000114062	intron_variant	ENSG00000114062	31,702	ENSG00000261529	32,906	31,702	ENSG00000114062	distal	NA	NA
15	25,314,618	G	A	false	distal	654	rs142250953	0.000021		0.002064	3.8593	intron_variant	intron_variant	ENSG00000114062	19,109	ENSG00000224078	23,392	19,109	ENSG00000114062	intron_variant	ENSG00000114062	31,412	ENSG00000261529	32,616	31,412	ENSG00000114062	distal	NA	NA
15	25,315,792	C	T	false	distal	654	rs13380274	0.000022		0.008469	235.15	intron_variant	intron_variant	ENSG00000114062	17,935	ENSG00000224078	22,218	17,935	ENSG00000114062	intron_variant	ENSG00000114062	30,238	ENSG00000261529	31,442	30,238	ENSG00000114062	distal	NA	NA
15	25,345,363	G	A	false	tss_proximal	661	rs2719878	0.000013		0.0433	18.094	intron_variant	intron_variant	ENSG00000114062	616	ENSG00000261529	269	269	ENSG00000261529	tss_proximal	ENSG00000114062	667	ENSG00000261529	1,871	667	ENSG00000114062	tss_proximal	tss_prox:b1	tss_prox:b1
15	25,421,145	C	T	false	tss_proximal	661	rs57720638	0.000011		0.041121	107.6	intron_variant	intron_variant	ENSG00000114062	392	ENSG00000114062	780	392	ENSG00000114062	tss_proximal	ENSG00000114062	411	ENSG00000224078	3,210	411	ENSG00000114062	tss_proximal	tss_prox:b1	tss_prox:b1
15	25,681,005	T	C	false	missense_variant	629	rs2076745	0.000005		0.005441	6.0461	missense_variant	missense_variant	ENSG00000206190	0	ENSG00000206190	0	0	ENSG00000206190	missense_variant	ENSG00000206190	10,785	ENSG00000206190	3,563	3,563	ENSG00000206190	missense_variant	NA	NA
15	25,681,032	C	T	false	missense_variant	617	rs2076744	0.000149		0.15196	39.582	missense_variant	missense_variant	ENSG00000206190	0	ENSG00000206190	0	0	ENSG00000206190	missense_variant	ENSG00000206190	10,758	ENSG00000206190	3,536	3,536	ENSG00000206190	missense_variant	NA	NA
15	25,713,214	G	A	false	3_prime_UTR_variant	656	rs142252057	0.000005		0.035589	18.202	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000206190	0	ENSG00000206190	0	0	ENSG00000206190	3_prime_UTR_variant	ENSG00000206190	21,422	ENSG00000206190	914	914	ENSG00000206190	3_prime_UTR_variant	NA	NA
15	25,778,831	C	T	false	distal	669	rs72705882	0.000007		0.075157	17.712	intron_variant	dELS	ENSG00000206190	2,187	ENSG00000206190	2,187	2,187	ENSG00000206190	dELS	ENSG00000206190	5,528	ENSG00000206190	19,106	5,528	ENSG00000206190	distal	NA	NA
15	25,796,219	G	A	false	distal	638	rs28451475	0.000015		0.35964	21.373	intron_variant	dELS_flank	ENSG00000206190	11,858	ENSG00000206190	14,995	11,858	ENSG00000206190	dELS_flank	ENSG00000206190	11,858	ENSG00000206190	36,494	11,858	ENSG00000206190	distal	NA	NA
15	25,796,958	A	T	false	distal	638	rs12595331	0.00001		0.3701	21.803	intron_variant	dELS_flank	ENSG00000206190	12,597	ENSG00000206190	15,734	12,597	ENSG00000206190	dELS_flank	ENSG00000206190	12,597	ENSG00000206190	37,233	12,597	ENSG00000206190	distal	NA	NA
15	25,863,222	C	A	false	5_prime_UTR_variant	631	rs183841283	0.000008		0.026445	34.96	5_prime_UTR_variant	5_prime_UTR_variant	ENSG00000206190	0	ENSG00000206190	19	0	ENSG00000206190	5_prime_UTR_variant	ENSG00000206190	104	ENSG00000206190	301	104	ENSG00000206190	5_prime_UTR_variant	NA	NA
15	25,865,066	C	T	false	5_prime_UTR_variant	631	rs73356452	0.000009		0.026529	34.802	5_prime_UTR_variant	5_prime_UTR_variant	ENSG00000206190	0	ENSG00000206190	0	0	ENSG00000206190	5_prime_UTR_variant	ENSG00000206190	105	ENSG00000206190	117	105	ENSG00000206190	5_prime_UTR_variant	NA	NA
15	26,015,283	A	G	false	tss_proximal	693	rs8042116	0.000007		0.011554	11.889	intron_variant	dELS_flank	ENSG00000206190	150,110	ENSG00000206187	50	50	ENSG00000206187	tss_proximal	ENSG00000206190	150,110	ENSG00000206187	470	470	ENSG00000206187	tss_proximal	tss_prox:b2	tss_prox:b2
15	26,634,187	G	C	false	distal	675	rs35680894	0.000018		0.47768	105.2	intron_variant	dELS	ENSG00000166206	5,096	ENSG00000166206	5,008	5,008	ENSG00000166206	dELS	ENSG00000166206	5,096	ENSG00000166206	5,008	5,008	ENSG00000166206	distal	NA	NA
15	26,634,311	C	T	false	distal	675	rs754198	0.000018		0.47848	104.98	intron_variant	dELS	ENSG00000166206	5,220	ENSG00000166206	5,132	5,132	ENSG00000166206	dELS	ENSG00000166206	5,220	ENSG00000166206	5,132	5,132	ENSG00000166206	distal	NA	NA
15	26,634,347	G	A	false	distal	675	rs754197	0.000018		0.47817	105.07	intron_variant	dELS	ENSG00000166206	5,256	ENSG00000166206	5,168	5,168	ENSG00000166206	dELS	ENSG00000166206	5,256	ENSG00000166206	5,168	5,168	ENSG00000166206	distal	NA	NA
15	27,500,082	C	T	false	distal	638	rs10852211	0.000009		0.33505	68.979	intron_variant	dELS_flank	ENSG00000182256	18,744	ENSG00000259168	16,785	16,785	ENSG00000259168	dELS_flank	ENSG00000182256	19,889	ENSG00000259168	41,114	19,889	ENSG00000182256	distal	NA	NA
15	27,501,038	G	T	false	distal	638	rs12908633	0.000006		0.38973	64.152	intron_variant	dELS_flank	ENSG00000182256	18,933	ENSG00000259168	17,741	17,741	ENSG00000259168	dELS_flank	ENSG00000182256	18,933	ENSG00000259168	40,158	18,933	ENSG00000182256	distal	NA	NA
15	27,514,135	G	A	false	distal	673	rs58812015	0.00003		0.018814	78.616	intron_variant	dELS	ENSG00000182256	5,836	ENSG00000259168	22,764	5,836	ENSG00000182256	dELS	ENSG00000182256	5,836	ENSG00000259168	27,061	5,836	ENSG00000182256	distal	NA	NA
15	27,514,605	G	A	false	distal	673	rs8042799	0.00003		0.018878	78.584	intron_variant	dELS	ENSG00000182256	5,366	ENSG00000259168	22,294	5,366	ENSG00000182256	dELS	ENSG00000182256	5,366	ENSG00000259168	26,591	5,366	ENSG00000182256	distal	NA	NA
15	27,541,784	C	A	false	3_prime_UTR_variant	656	rs147047828	0.000009		0.033855	12.471	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000182256	0	ENSG00000259168	0	0	ENSG00000182256	3_prime_UTR_variant	ENSG00000182256	21,811	ENSG00000259168	206	206	ENSG00000259168	3_prime_UTR_variant	NA	NA
15	29,301,772	C	T	false	distal	681	rs35656057	0.000008		0.13144	29.911	intron_variant	CA-CTCF_flank	ENSG00000185115	31,949	ENSG00000259299	66,634	31,949	ENSG00000185115	CA-CTCF_flank	ENSG00000185115	31,949	ENSG00000259299	66,634	31,949	ENSG00000185115	distal	NA	NA
15	29,303,252	T	C	false	distal	681	rs1031182	0.000021		0.1516	81.143	intron_variant	CA-CTCF_flank	ENSG00000185115	33,429	ENSG00000259299	68,114	33,429	ENSG00000185115	CA-CTCF_flank	ENSG00000185115	33,429	ENSG00000259299	68,114	33,429	ENSG00000185115	distal	NA	NA
15	29,601,735	A	G	false	distal	646	rs1459361	0.000007		0.3443	21.68	intergenic_variant	CA_flank	ENSG00000104059	30,755	ENSG00000259814	7,940	7,940	ENSG00000259814	CA_flank	ENSG00000104059	30,755	ENSG00000259814	9,476	9,476	ENSG00000259814	distal	NA	NA
15	29,881,233	T	C	false	distal	641	rs711356	0.000171		0.11257	35.074	intron_variant	dELS_flank	ENSG00000104067	58,729	ENSG00000259523	57,151	57,151	ENSG00000259523	dELS_flank	ENSG00000104067	58,729	ENSG00000259523	58,601	58,601	ENSG00000259523	distal	NA	NA
15	29,881,682	C	T	false	distal	641	rs785422	0.00016		0.11034	35.384	intron_variant	dELS_flank	ENSG00000104067	59,178	ENSG00000259523	57,600	57,600	ENSG00000259523	dELS_flank	ENSG00000104067	59,178	ENSG00000259523	59,050	59,050	ENSG00000259523	distal	NA	NA
15	29,884,631	G	A	false	distal	641	rs17683519	0.000011		0.14016	84.763	intron_variant	dELS_flank	ENSG00000104067	62,127	ENSG00000259523	60,549	60,549	ENSG00000259523	dELS_flank	ENSG00000104067	62,127	ENSG00000259523	61,999	61,999	ENSG00000259523	distal	NA	NA
15	30,608,692	G	A	false	missense_variant	625	rs80198225	0.000056		0.27044	206.56	missense_variant	missense_variant	ENSG00000261794	0	ENSG00000270016	498	0	ENSG00000261794	missense_variant	ENSG00000261794	4,663	ENSG00000270016	498	498	ENSG00000270016	missense_variant	NA	NA
15	30,614,056	G	T	false	splicing	687	rs563896052	0.000945		0.48737	311.92	splice_donor_region_variant	splice_donor_region_variant	ENSG00000261794	5	ENSG00000277467	1,095	5	ENSG00000261794	splice_donor_region_variant	ENSG00000261794	10,027	ENSG00000277467	1,331	1,331	ENSG00000277467	splicing	NA	splicing:b1
15	31,065,227	C	T	false	tss_proximal	686	rs76580248	0.000064		0.025127	38.366	intron_variant	TF_flank	ENSG00000134160	848	ENSG00000207702	85	85	ENSG00000207702	tss_proximal	ENSG00000134160	2,864	ENSG00000207702	85	85	ENSG00000207702	tss_proximal	tss_prox:b2	tss_prox:b1
15	31,444,941	A	G	false	distal	670	rs9920397	0.000027		0.37767	53.336	intergenic_variant	dELS	ENSG00000169918	30,456	ENSG00000259696	8,259	8,259	ENSG00000259696	dELS	ENSG00000169926	78,786	ENSG00000259696	9,197	9,197	ENSG00000259696	distal	NA	NA
15	32,151,478	G	A	false	distal	679	rs79319041	0.000034		0.11731	15.913	intron_variant	dELS	ENSG00000175344	2,428	ENSG00000175344	1,909	1,909	ENSG00000175344	dELS	ENSG00000175344	6,133	ENSG00000175344	1,909	1,909	ENSG00000175344	distal	NA	NA
15	32,632,503	T	C	false	tss_proximal	686	rs78668093	0.000021		0.026352	18.355	intron_variant	CA-CTCF_flank	ENSG00000288864	475	ENSG00000198826	321	321	ENSG00000198826	tss_proximal	ENSG00000198826	3,774	ENSG00000198826	321	321	ENSG00000198826	tss_proximal	tss_prox:b2	tss_prox:b1
15	32,717,030	A	C	false	tss_proximal	661	rs72715291	0.000018		0.0416	26.544	upstream_gene_variant	pELS	ENSG00000166923	973	ENSG00000259721	239	239	ENSG00000259721	tss_proximal	ENSG00000166923	973	ENSG00000259721	1,823	973	ENSG00000166923	tss_proximal	tss_prox:b1	tss_prox:b1
15	32,801,966	A	G	false	distal	634	rs12148180	0.000024		0.3388	66.69	intron_variant	dELS_flank	ENSG00000248905	2,314	ENSG00000248905	2,314	2,314	ENSG00000248905	dELS_flank	ENSG00000166923	83,471	ENSG00000259392	35,359	35,359	ENSG00000259392	distal	NA	NA
15	32,804,094	C	T	false	distal	634	rs1020559	0.000018		0.31927	69.562	intron_variant	dELS_flank	ENSG00000248905	186	ENSG00000248905	186	186	ENSG00000248905	dELS_flank	ENSG00000248905	84,159	ENSG00000259392	33,231	33,231	ENSG00000259392	distal	NA	NA
15	33,108,614	A	T	false	distal	674	rs144881407	0.000033		0.02412	99.441	intron_variant	dELS	ENSG00000248905	10,634	ENSG00000279958	2,377	2,377	ENSG00000279958	dELS	ENSG00000248905	10,766	ENSG00000279958	2,377	2,377	ENSG00000279958	distal	NA	NA
15	33,108,870	G	A	false	distal	674	rs145143569	0.000033		0.02412	99.444	intron_variant	dELS	ENSG00000248905	10,378	ENSG00000279958	2,633	2,633	ENSG00000279958	dELS	ENSG00000248905	10,510	ENSG00000279958	2,633	2,633	ENSG00000279958	distal	NA	NA
15	33,147,468	G	A	false	distal	665	rs186856288	0.000402		0.008699	22.808	intron_variant	dELS	ENSG00000248905	2,315	ENSG00000248905	32,729	2,315	ENSG00000248905	dELS	ENSG00000248905	7,571	ENSG00000279958	41,231	7,571	ENSG00000248905	distal	NA	NA
15	33,154,746	A	C	false	missense_variant	624	rs1399078	0.000022		0.27583	88.377	missense_variant	missense_variant	ENSG00000248905	0	ENSG00000248905	25,451	0	ENSG00000248905	missense_variant	ENSG00000248905	293	ENSG00000289896	39,517	293	ENSG00000248905	missense_variant	NA	NA
15	33,176,442	G	T	false	distal	649	rs6494939	0.000014		0.46615	79.27	intron_variant	intron_variant	ENSG00000248905	3,755	ENSG00000248905	3,755	3,755	ENSG00000248905	intron_variant	ENSG00000248905	18,253	ENSG00000289896	17,821	17,821	ENSG00000289896	distal	NA	NA
15	33,836,774	T	C	false	tss_proximal	661	rs73372072	0.000128		0.042065	18.854	intron_variant	intron_variant	ENSG00000198838	131	ENSG00000198838	131	131	ENSG00000198838	tss_proximal	ENSG00000198838	138	ENSG00000198838	1,574	138	ENSG00000198838	tss_proximal	tss_prox:b1	tss_prox:b1
15	33,837,522	G	C	false	tss_proximal	661	rs117920466	0.000011		0.039532	194.95	intron_variant	CA	ENSG00000198838	108	ENSG00000198838	108	108	ENSG00000198838	tss_proximal	ENSG00000198838	604	ENSG00000198838	826	604	ENSG00000198838	tss_proximal	tss_prox:b1	tss_prox:b1
15	33,865,235	C	G	false	3_prime_UTR_variant	656	rs41280044	0.000011		0.039364	202.47	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000198838	0	ENSG00000198838	0	0	ENSG00000198838	3_prime_UTR_variant	ENSG00000198838	23,266	ENSG00000259287	409	409	ENSG00000259287	3_prime_UTR_variant	NA	NA
15	33,865,246	G	C	false	3_prime_UTR_variant	656	rs117474814	0.000011		0.040046	203.96	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000198838	0	ENSG00000198838	0	0	ENSG00000198838	3_prime_UTR_variant	ENSG00000198838	23,277	ENSG00000259287	420	420	ENSG00000259287	3_prime_UTR_variant	NA	NA
15	33,865,285	C	T	false	3_prime_UTR_variant	656	rs200126350	0.000011		0.038935	202.67	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000198838	0	ENSG00000198838	0	0	ENSG00000198838	3_prime_UTR_variant	ENSG00000198838	23,316	ENSG00000259287	459	459	ENSG00000259287	3_prime_UTR_variant	NA	NA
15	33,865,287	T	C	false	3_prime_UTR_variant	656	rs201908377	0.000011		0.038773	202.14	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000198838	0	ENSG00000198838	0	0	ENSG00000198838	3_prime_UTR_variant	ENSG00000198838	23,318	ENSG00000259287	461	461	ENSG00000259287	3_prime_UTR_variant	NA	NA
15	34,030,472	A	C	false	distal	665	rs145004301	0.000012		0.015186	45.385	intron_variant	dELS	ENSG00000169857	8,307	ENSG00000169857	27,262	8,307	ENSG00000169857	dELS	ENSG00000169857	8,731	ENSG00000259505	39,785	8,731	ENSG00000169857	distal	NA	NA
15	34,185,754	G	A	false	distal	673	rs62016522	0.000014		0.020304	12.683	intron_variant	dELS	ENSG00000134152	7,754	ENSG00000134152	22,063	7,754	ENSG00000134152	dELS	ENSG00000134152	14,085	ENSG00000134152	24,306	14,085	ENSG00000134152	distal	NA	NA
15	34,357,010	C	A	false	missense_variant	621	rs2279683	0.000021		0.057454	38.854	missense_variant	missense_variant	ENSG00000184507	0	ENSG00000176454	1,898	0	ENSG00000184507	missense_variant	ENSG00000176454	10,185	ENSG00000176454	5,644	5,644	ENSG00000176454	missense_variant	NA	NA
15	34,357,046	C	G	false	missense_variant	621	rs2279684	0.000021		0.057469	38.832	missense_variant	missense_variant	ENSG00000184507	0	ENSG00000176454	1,862	0	ENSG00000184507	missense_variant	ENSG00000176454	10,149	ENSG00000176454	5,608	5,608	ENSG00000176454	missense_variant	NA	NA
15	34,591,516	A	C	false	distal	674	rs147547094	0.000004		0.022978	63.381	intergenic_variant	dELS	ENSG00000215252	7,864	ENSG00000215252	3,012	3,012	ENSG00000215252	dELS	ENSG00000215252	7,864	ENSG00000215252	3,012	3,012	ENSG00000215252	distal	NA	NA
15	34,797,859	A	G	false	distal	672	rs893132	0.000015		0.40863	9.5008	intron_variant	dELS	ENSG00000159251	2,309	ENSG00000250007	1,165	1,165	ENSG00000250007	dELS	ENSG00000159251	2,309	ENSG00000250007	1,507	1,507	ENSG00000250007	distal	NA	NA
15	34,799,485	G	T	false	distal	676	rs640249	0.000004		0.45533	23.49	intron_variant	dELS	ENSG00000159251	3,935	ENSG00000250007	2,791	2,791	ENSG00000250007	dELS	ENSG00000159251	3,935	ENSG00000250007	3,133	3,133	ENSG00000250007	distal	NA	NA
15	34,853,939	T	A	false	3_prime_UTR_variant	659	rs1357180	0.000009		0.23362	125.05	3_prime_UTR_variant	3_prime_UTR_variant	ENSG00000021776	0	ENSG00000021776	2,411	0	ENSG00000021776	3_prime_UTR_variant	ENSG00000159251	58,389	ENSG00000259751	3,543	3,543	ENSG00000259751	3_prime_UTR_variant	NA	NA

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