chrom stringclasses 12
values | pos int64 36.1k 249M | ref stringclasses 4
values | alt stringclasses 4
values | label bool 2
classes | subset stringclasses 8
values | match_group int64 0 2.16k | rsid stringlengths 3 15 | pip float64 0 1 | traits stringclasses 279
values | MAF float64 0 0.5 | ld_score float64 1.01 3.79k | consequence stringclasses 13
values | consequence_cre stringclasses 29
values | exon_closest_pc_gene_id stringlengths 15 15 | distance_exon_pc int64 0 1.68M | exon_closest_nc_gene_id stringlengths 15 15 | distance_exon_nc int64 0 507k | distance_exon int64 0 507k | exon_closest_gene_id stringlengths 15 15 | consequence_final stringclasses 28
values | tss_closest_pc_gene_id stringlengths 15 15 | distance_tss_pc int64 0 1.69M | tss_closest_nc_gene_id stringlengths 15 15 | distance_tss_nc int64 0 531k | distance_tss int64 0 531k | tss_closest_gene_id stringlengths 15 15 | consequence_group stringclasses 8
values | distance_tss_pc_bin stringclasses 4
values | distance_exon_pc_bin stringclasses 7
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15 | 50,356,862 | G | A | false | non_coding_transcript_exon_variant | 690 | rs554849961 | 0.000145 | 0.001617 | 6.9672 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000104064 | 1,453 | ENSG00000244879 | 0 | 0 | ENSG00000244879 | non_coding_transcript_exon_variant | ENSG00000104064 | 1,453 | ENSG00000244879 | 390 | 390 | ENSG00000244879 | non_coding_transcript_exon_variant | NA | NA | |
15 | 50,477,323 | G | A | false | missense_variant | 628 | rs61733869 | 0.002545 | 0.047738 | 73.364 | missense_variant | missense_variant | ENSG00000138592 | 0 | ENSG00000138592 | 0 | 0 | ENSG00000138592 | missense_variant | ENSG00000138592 | 50,428 | ENSG00000242737 | 10,584 | 10,584 | ENSG00000242737 | missense_variant | NA | NA | |
15 | 50,503,906 | T | A | false | 3_prime_UTR_variant | 659 | rs3131613 | 0.004209 | 0.23272 | 363.01 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000138592 | 0 | ENSG00000170236 | 2,854 | 0 | ENSG00000138592 | 3_prime_UTR_variant | ENSG00000170236 | 42,759 | ENSG00000138592 | 5,408 | 5,408 | ENSG00000138592 | 3_prime_UTR_variant | NA | NA | |
15 | 50,504,864 | C | T | false | 3_prime_UTR_variant | 659 | rs3131612 | 0.003987 | 0.23296 | 363.81 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000138592 | 0 | ENSG00000170236 | 3,812 | 0 | ENSG00000138592 | 3_prime_UTR_variant | ENSG00000170236 | 41,801 | ENSG00000138592 | 6,366 | 6,366 | ENSG00000138592 | 3_prime_UTR_variant | NA | NA | |
15 | 50,507,641 | G | T | false | 3_prime_UTR_variant | 657 | rs11857728 | 0.00125 | 0.060955 | 90.775 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000138592 | 0 | ENSG00000170236 | 5,749 | 0 | ENSG00000138592 | 3_prime_UTR_variant | ENSG00000170236 | 39,024 | ENSG00000138592 | 9,143 | 9,143 | ENSG00000138592 | 3_prime_UTR_variant | NA | NA | |
15 | 50,507,898 | G | A | false | 3_prime_UTR_variant | 659 | rs3131610 | 0.005158 | 0.25015 | 358.54 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000138592 | 0 | ENSG00000170236 | 5,492 | 0 | ENSG00000138592 | 3_prime_UTR_variant | ENSG00000170236 | 38,767 | ENSG00000138592 | 9,400 | 9,400 | ENSG00000138592 | 3_prime_UTR_variant | NA | NA | |
15 | 50,508,901 | G | A | false | 3_prime_UTR_variant | 659 | rs141854869 | 0.001206 | 0.22206 | 376.94 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000138592 | 0 | ENSG00000170236 | 4,489 | 0 | ENSG00000138592 | 3_prime_UTR_variant | ENSG00000170236 | 37,764 | ENSG00000138592 | 10,403 | 10,403 | ENSG00000138592 | 3_prime_UTR_variant | NA | NA | |
15 | 50,542,771 | G | A | false | distal | 672 | rs62019154 | 0.001064 | 0.40526 | 378.86 | intron_variant | dELS | ENSG00000170236 | 826 | ENSG00000170236 | 826 | 826 | ENSG00000170236 | dELS | ENSG00000170236 | 3,894 | ENSG00000170236 | 1,894 | 1,894 | ENSG00000170236 | distal | NA | NA | |
15 | 50,739,814 | G | A | false | missense_variant | 629 | rs61752332 | 0.000453 | 0.001748 | 15.987 | missense_variant | missense_variant | ENSG00000138600 | 0 | ENSG00000138600 | 0 | 0 | ENSG00000138600 | missense_variant | ENSG00000138600 | 7,716 | ENSG00000279665 | 3,461 | 3,461 | ENSG00000279665 | missense_variant | NA | NA | |
15 | 51,139,461 | T | A | false | distal | 681 | rs12902197 | 0.00041 | 0.18718 | 231.57 | intron_variant | CA-CTCF_flank | ENSG00000183578 | 34,184 | ENSG00000259204 | 69,874 | 34,184 | ENSG00000183578 | CA-CTCF_flank | ENSG00000183578 | 34,184 | ENSG00000259204 | 69,874 | 34,184 | ENSG00000183578 | distal | NA | NA | |
15 | 51,139,491 | T | G | false | distal | 681 | rs12902208 | 0.000146 | 0.22357 | 282.84 | intron_variant | CA-CTCF_flank | ENSG00000183578 | 34,214 | ENSG00000259204 | 69,904 | 34,214 | ENSG00000183578 | CA-CTCF_flank | ENSG00000183578 | 34,214 | ENSG00000259204 | 69,904 | 34,214 | ENSG00000183578 | distal | NA | NA | |
15 | 51,218,671 | A | C | false | splicing | 692 | rs4324076 | 0.005278 | 0.47035 | 247.06 | splice_polypyrimidine_tract_variant | splice_polypyrimidine_tract_variant | ENSG00000137869 | 15 | ENSG00000137869 | 15 | 15 | ENSG00000137869 | splice_polypyrimidine_tract_variant | ENSG00000137869 | 3,446 | ENSG00000137869 | 122 | 122 | ENSG00000137869 | splicing | NA | splicing:b1 | |
15 | 51,221,724 | G | A | true | 3_prime_UTR_variant | 655 | rs959564 | 0.988055 | eBMD | 0.073448 | 86.632 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000137869 | 0 | ENSG00000137869 | 624 | 0 | ENSG00000137869 | 3_prime_UTR_variant | ENSG00000137869 | 6,499 | ENSG00000137869 | 629 | 629 | ENSG00000137869 | 3_prime_UTR_variant | NA | NA |
15 | 51,261,712 | A | G | true | distal | 649 | rs17601876 | 1 | eBMD | 0.4775 | 204.34 | intron_variant | intron_variant | ENSG00000137869 | 5,950 | ENSG00000137869 | 5,950 | 5,950 | ENSG00000137869 | intron_variant | ENSG00000137869 | 18,647 | ENSG00000137869 | 16,447 | 16,447 | ENSG00000137869 | distal | NA | NA |
15 | 51,318,271 | A | G | true | tss_proximal | 661 | rs146610032 | 1 | eBMD | 0.03767 | 41.109 | intron_variant | dELS_flank | ENSG00000137869 | 161 | ENSG00000137869 | 161 | 161 | ENSG00000137869 | tss_proximal | ENSG00000137869 | 220 | ENSG00000259306 | 2,429 | 220 | ENSG00000137869 | tss_proximal | tss_prox:b1 | tss_prox:b1 |
15 | 51,341,432 | G | A | false | tss_proximal | 662 | rs72729210 | 0.000332 | 0.22071 | 112.04 | upstream_gene_variant | PLS | ENSG00000186417 | 222 | ENSG00000186417 | 441 | 222 | ENSG00000186417 | tss_proximal | ENSG00000186417 | 222 | ENSG00000186417 | 441 | 222 | ENSG00000186417 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 51,498,782 | T | C | false | missense_variant | 627 | rs35349640 | 0.000097 | 0.016205 | 47.226 | missense_variant | missense_variant | ENSG00000104093 | 0 | ENSG00000259678 | 0 | 0 | ENSG00000104093 | missense_variant | ENSG00000186417 | 121,325 | ENSG00000104093 | 27,431 | 27,431 | ENSG00000104093 | missense_variant | NA | NA | |
15 | 51,752,737 | A | C | false | non_coding_transcript_exon_variant | 689 | rs117933765 | 0.000245 | 0.003624 | 225.83 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000128872 | 1,024 | ENSG00000259377 | 0 | 0 | ENSG00000259377 | non_coding_transcript_exon_variant | ENSG00000128872 | 1,069 | ENSG00000259377 | 251 | 251 | ENSG00000259377 | non_coding_transcript_exon_variant | NA | NA | |
15 | 51,752,813 | T | G | false | non_coding_transcript_exon_variant | 689 | rs187682493 | 0.000089 | 0.002562 | 17.523 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000128872 | 1,100 | ENSG00000259377 | 0 | 0 | ENSG00000259377 | non_coding_transcript_exon_variant | ENSG00000128872 | 1,145 | ENSG00000259377 | 327 | 327 | ENSG00000259377 | non_coding_transcript_exon_variant | NA | NA | |
15 | 51,808,018 | C | T | true | distal | 650 | rs11631530 | 0.91808 | Smoking_Ever_Never | 0.11818 | 128.36 | intron_variant | intron_variant | ENSG00000128872 | 401 | ENSG00000128872 | 401 | 401 | ENSG00000128872 | intron_variant | ENSG00000138594 | 21,609 | ENSG00000274954 | 25,115 | 21,609 | ENSG00000138594 | distal | NA | NA |
15 | 51,914,832 | G | A | false | 3_prime_UTR_variant | 658 | rs2448949 | 0.000214 | 0.41004 | 511.39 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000138594 | 0 | ENSG00000138594 | 1,182 | 0 | ENSG00000138594 | 3_prime_UTR_variant | ENSG00000166477 | 56,943 | ENSG00000259185 | 5,189 | 5,189 | ENSG00000259185 | 3_prime_UTR_variant | NA | NA | |
15 | 51,915,302 | A | G | false | 3_prime_UTR_variant | 658 | rs2929424 | 0.000211 | 0.4024 | 499.85 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000138594 | 0 | ENSG00000138594 | 712 | 0 | ENSG00000138594 | 3_prime_UTR_variant | ENSG00000166477 | 56,473 | ENSG00000259185 | 5,659 | 5,659 | ENSG00000259185 | 3_prime_UTR_variant | NA | NA | |
15 | 52,017,921 | G | T | false | non_coding_transcript_exon_variant | 689 | rs55714716 | 0.000107 | 0.002676 | 208.65 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000069956 | 1,287 | ENSG00000274528 | 0 | 0 | ENSG00000274528 | non_coding_transcript_exon_variant | ENSG00000069956 | 1,287 | ENSG00000274528 | 110 | 110 | ENSG00000274528 | non_coding_transcript_exon_variant | NA | NA | |
15 | 52,114,987 | C | G | false | distal | 644 | rs12899030 | 0.000217 | 0.14907 | 154.21 | downstream_gene_variant | pELS | ENSG00000069966 | 112 | ENSG00000259327 | 1,586 | 112 | ENSG00000069966 | pELS | ENSG00000137875 | 2,211 | ENSG00000259327 | 1,586 | 1,586 | ENSG00000259327 | distal | NA | NA | |
15 | 52,115,006 | G | A | false | distal | 644 | rs12899343 | 0.000215 | 0.14908 | 154.2 | downstream_gene_variant | pELS | ENSG00000069966 | 93 | ENSG00000259327 | 1,567 | 93 | ENSG00000069966 | pELS | ENSG00000137875 | 2,230 | ENSG00000259327 | 1,567 | 1,567 | ENSG00000259327 | distal | NA | NA | |
15 | 52,235,754 | T | C | false | missense_variant | 628 | rs55753304 | 0.00017 | 0.022574 | 84.192 | missense_variant | missense_variant | ENSG00000128833 | 0 | ENSG00000128833 | 0 | 0 | ENSG00000128833 | missense_variant | ENSG00000069966 | 44,361 | ENSG00000128833 | 7,804 | 7,804 | ENSG00000128833 | missense_variant | NA | NA | |
15 | 52,351,367 | G | A | false | missense_variant | 617 | rs1058219 | 0.000281 | 0.16664 | 448.75 | missense_variant | missense_variant | ENSG00000197535 | 0 | ENSG00000197535 | 0 | 0 | ENSG00000197535 | missense_variant | ENSG00000197535 | 8,713 | ENSG00000197535 | 837 | 837 | ENSG00000197535 | missense_variant | NA | NA | |
15 | 52,491,768 | T | C | false | distal | 680 | rs2177876 | 0.000451 | 0.17032 | 478.79 | intron_variant | dELS | ENSG00000197535 | 32,314 | ENSG00000231169 | 13,422 | 13,422 | ENSG00000231169 | dELS | ENSG00000197535 | 37,037 | ENSG00000231169 | 13,422 | 13,422 | ENSG00000231169 | distal | NA | NA | |
15 | 52,491,790 | C | G | false | distal | 680 | rs72623986 | 0.000253 | 0.16926 | 482.44 | intron_variant | dELS | ENSG00000197535 | 32,292 | ENSG00000231169 | 13,400 | 13,400 | ENSG00000231169 | dELS | ENSG00000197535 | 37,015 | ENSG00000231169 | 13,400 | 13,400 | ENSG00000231169 | distal | NA | NA | |
15 | 52,609,086 | T | C | false | missense_variant | 617 | rs61731670 | 0.000091 | 0.16565 | 161.22 | missense_variant | missense_variant | ENSG00000047346 | 0 | ENSG00000047346 | 0 | 0 | ENSG00000047346 | missense_variant | ENSG00000047346 | 7,921 | ENSG00000047346 | 489 | 489 | ENSG00000047346 | missense_variant | NA | NA | |
15 | 52,609,236 | C | T | false | missense_variant | 625 | rs12915981 | 0.000782 | 0.25943 | 172.46 | missense_variant | missense_variant | ENSG00000047346 | 0 | ENSG00000047346 | 0 | 0 | ENSG00000047346 | missense_variant | ENSG00000047346 | 8,071 | ENSG00000047346 | 639 | 639 | ENSG00000047346 | missense_variant | NA | NA | |
15 | 52,718,081 | G | C | false | distal | 665 | rs190425999 | 0.000099 | 0.011038 | 26.599 | intergenic_variant | dELS | ENSG00000047346 | 8,263 | ENSG00000287500 | 28,003 | 8,263 | ENSG00000047346 | dELS | ENSG00000047346 | 8,263 | ENSG00000287500 | 38,606 | 8,263 | ENSG00000047346 | distal | NA | NA | |
15 | 52,718,750 | C | T | false | distal | 665 | rs76454795 | 0.000049 | 0.017107 | 31.019 | intergenic_variant | dELS | ENSG00000047346 | 8,932 | ENSG00000287500 | 28,672 | 8,932 | ENSG00000047346 | dELS | ENSG00000047346 | 8,932 | ENSG00000287500 | 39,275 | 8,932 | ENSG00000047346 | distal | NA | NA | |
15 | 52,718,860 | A | G | false | distal | 665 | rs144840008 | 0.000068 | 0.015432 | 31.268 | intergenic_variant | dELS | ENSG00000047346 | 9,042 | ENSG00000287500 | 28,782 | 9,042 | ENSG00000047346 | dELS | ENSG00000047346 | 9,042 | ENSG00000287500 | 39,385 | 9,042 | ENSG00000047346 | distal | NA | NA | |
15 | 52,719,830 | G | T | false | distal | 665 | rs188426038 | 0.000052 | 0.001678 | 6.7861 | intergenic_variant | dELS | ENSG00000047346 | 10,012 | ENSG00000287500 | 29,752 | 10,012 | ENSG00000047346 | dELS | ENSG00000047346 | 10,012 | ENSG00000287500 | 40,355 | 10,012 | ENSG00000047346 | distal | NA | NA | |
15 | 52,720,169 | G | A | true | distal | 665 | rs181731374 | 0.97947 | SHBG | 0.007116 | 13.237 | intergenic_variant | dELS | ENSG00000047346 | 10,351 | ENSG00000287500 | 30,091 | 10,351 | ENSG00000047346 | dELS | ENSG00000047346 | 10,351 | ENSG00000287500 | 40,694 | 10,351 | ENSG00000047346 | distal | NA | NA |
15 | 52,751,479 | G | C | false | distal | 633 | rs548104699 | 0.000089 | 0.001008 | 14.91 | intergenic_variant | dELS_flank | ENSG00000169856 | 3,573 | ENSG00000169856 | 5,835 | 3,573 | ENSG00000169856 | dELS_flank | ENSG00000169856 | 38,856 | ENSG00000169856 | 29,703 | 29,703 | ENSG00000169856 | distal | NA | NA | |
15 | 52,752,858 | G | C | true | distal | 633 | rs546650331 | 0.98404 | SHBG | 0.003302 | 20.73 | intergenic_variant | dELS_flank | ENSG00000169856 | 2,194 | ENSG00000169856 | 4,456 | 2,194 | ENSG00000169856 | dELS_flank | ENSG00000169856 | 37,477 | ENSG00000169856 | 28,324 | 28,324 | ENSG00000169856 | distal | NA | NA |
15 | 52,768,994 | C | G | false | distal | 651 | rs147254925 | 0.000078 | 0.011843 | 17.102 | intron_variant | intron_variant | ENSG00000169856 | 11,146 | ENSG00000169856 | 11,146 | 11,146 | ENSG00000169856 | intron_variant | ENSG00000169856 | 21,341 | ENSG00000169856 | 12,188 | 12,188 | ENSG00000169856 | distal | NA | NA | |
15 | 52,769,240 | G | C | false | distal | 651 | rs138921083 | 0.000019 | 0.003686 | 12.453 | intron_variant | intron_variant | ENSG00000169856 | 11,392 | ENSG00000169856 | 11,355 | 11,355 | ENSG00000169856 | intron_variant | ENSG00000169856 | 21,095 | ENSG00000169856 | 11,942 | 11,942 | ENSG00000169856 | distal | NA | NA | |
15 | 52,769,472 | G | A | false | distal | 651 | rs187046501 | 0.000051 | 0.001474 | 3.9868 | intron_variant | intron_variant | ENSG00000169856 | 11,624 | ENSG00000169856 | 11,123 | 11,123 | ENSG00000169856 | intron_variant | ENSG00000169856 | 20,863 | ENSG00000169856 | 11,710 | 11,710 | ENSG00000169856 | distal | NA | NA | |
15 | 52,769,753 | G | T | false | distal | 651 | rs142626737 | 0.000122 | 0.003604 | 13.228 | intron_variant | intron_variant | ENSG00000169856 | 11,905 | ENSG00000169856 | 10,842 | 10,842 | ENSG00000169856 | intron_variant | ENSG00000169856 | 20,582 | ENSG00000169856 | 11,429 | 11,429 | ENSG00000169856 | distal | NA | NA | |
15 | 52,769,871 | T | C | true | distal | 651 | rs149663666 | 0.99996 | CRP | 0.008655 | 14.62 | intron_variant | intron_variant | ENSG00000169856 | 12,023 | ENSG00000169856 | 10,724 | 10,724 | ENSG00000169856 | intron_variant | ENSG00000169856 | 20,464 | ENSG00000169856 | 11,311 | 11,311 | ENSG00000169856 | distal | NA | NA |
15 | 52,770,534 | C | T | false | distal | 651 | rs76286033 | 0.000068 | 0.004407 | 55.921 | intron_variant | intron_variant | ENSG00000169856 | 12,686 | ENSG00000169856 | 10,061 | 10,061 | ENSG00000169856 | intron_variant | ENSG00000169856 | 19,801 | ENSG00000169856 | 10,648 | 10,648 | ENSG00000169856 | distal | NA | NA | |
15 | 52,776,180 | C | G | false | distal | 675 | rs1899749 | 0.000087 | 0.46334 | 64.053 | intron_variant | dELS | ENSG00000169856 | 12,599 | ENSG00000169856 | 4,415 | 4,415 | ENSG00000169856 | dELS | ENSG00000169856 | 14,155 | ENSG00000169856 | 5,002 | 5,002 | ENSG00000169856 | distal | NA | NA | |
15 | 52,938,624 | G | A | false | tss_proximal | 693 | rs4343224 | 0.000028 | 0.013932 | 60.934 | upstream_gene_variant | upstream_gene_variant | ENSG00000169856 | 148,287 | ENSG00000259612 | 105 | 105 | ENSG00000259612 | tss_proximal | ENSG00000169856 | 148,287 | ENSG00000259612 | 105 | 105 | ENSG00000259612 | tss_proximal | tss_prox:b2 | tss_prox:b2 | |
15 | 52,939,234 | T | A | false | tss_proximal | 693 | rs190067296 | 0.000031 | 0.019893 | 24.254 | upstream_gene_variant | upstream_gene_variant | ENSG00000169856 | 148,897 | ENSG00000259612 | 715 | 715 | ENSG00000259612 | tss_proximal | ENSG00000169856 | 148,897 | ENSG00000259612 | 715 | 715 | ENSG00000259612 | tss_proximal | tss_prox:b2 | tss_prox:b2 | |
15 | 53,452,860 | G | C | false | distal | 666 | rs143555427 | 0.000021 | 0.003459 | 5.7374 | intron_variant | dELS | ENSG00000166415 | 60,880 | ENSG00000287596 | 517 | 517 | ENSG00000287596 | dELS | ENSG00000166415 | 88,219 | ENSG00000287596 | 32,994 | 32,994 | ENSG00000287596 | distal | NA | NA | |
15 | 53,453,119 | A | G | false | distal | 666 | rs75031121 | 0.000031 | 0.0063 | 22.229 | intron_variant | dELS | ENSG00000166415 | 60,621 | ENSG00000287596 | 258 | 258 | ENSG00000287596 | dELS | ENSG00000166415 | 87,960 | ENSG00000287596 | 33,253 | 33,253 | ENSG00000287596 | distal | NA | NA | |
15 | 53,453,700 | C | T | false | distal | 666 | rs552234859 | 0.000043 | 0.001693 | 5.8374 | downstream_gene_variant | dELS | ENSG00000166415 | 60,040 | ENSG00000287596 | 212 | 212 | ENSG00000287596 | dELS | ENSG00000166415 | 87,379 | ENSG00000287596 | 33,834 | 33,834 | ENSG00000287596 | distal | NA | NA | |
15 | 53,453,817 | C | A | false | distal | 666 | rs626801 | 0.000054 | 0.004911 | 23.764 | downstream_gene_variant | dELS | ENSG00000166415 | 59,923 | ENSG00000287596 | 329 | 329 | ENSG00000287596 | dELS | ENSG00000166415 | 87,262 | ENSG00000287596 | 33,951 | 33,951 | ENSG00000287596 | distal | NA | NA | |
15 | 53,454,039 | C | A | false | distal | 666 | rs544129357 | 0.000045 | 0.004633 | 19.109 | downstream_gene_variant | dELS | ENSG00000166415 | 59,701 | ENSG00000287596 | 551 | 551 | ENSG00000287596 | dELS | ENSG00000166415 | 87,040 | ENSG00000287596 | 34,173 | 34,173 | ENSG00000287596 | distal | NA | NA | |
15 | 53,455,031 | C | G | true | distal | 666 | rs528350911 | 1 | SHBG | 0.006472 | 11.722 | intergenic_variant | dELS | ENSG00000166415 | 58,709 | ENSG00000287596 | 1,543 | 1,543 | ENSG00000287596 | dELS | ENSG00000166415 | 86,048 | ENSG00000287596 | 35,165 | 35,165 | ENSG00000287596 | distal | NA | NA |
15 | 53,455,742 | C | G | false | distal | 666 | rs140075473 | 0.000023 | 0.014176 | 20.717 | intergenic_variant | dELS | ENSG00000166415 | 57,998 | ENSG00000287596 | 2,254 | 2,254 | ENSG00000287596 | dELS | ENSG00000166415 | 85,337 | ENSG00000287596 | 35,876 | 35,876 | ENSG00000287596 | distal | NA | NA | |
15 | 53,457,018 | T | C | false | distal | 666 | rs541715221 | 0.000021 | 0.001215 | 9.3952 | intergenic_variant | dELS | ENSG00000166415 | 56,722 | ENSG00000287596 | 3,530 | 3,530 | ENSG00000287596 | dELS | ENSG00000166415 | 84,061 | ENSG00000287596 | 37,152 | 37,152 | ENSG00000287596 | distal | NA | NA | |
15 | 53,457,094 | C | T | false | distal | 666 | rs560851286 | 0.000176 | 0.001144 | 6.4861 | intergenic_variant | dELS | ENSG00000166415 | 56,646 | ENSG00000287596 | 3,606 | 3,606 | ENSG00000287596 | dELS | ENSG00000166415 | 83,985 | ENSG00000287596 | 37,228 | 37,228 | ENSG00000287596 | distal | NA | NA | |
15 | 53,470,373 | G | A | false | distal | 637 | rs615041 | 0.001556 | 0.21619 | 39.628 | intergenic_variant | dELS_flank | ENSG00000166415 | 43,367 | ENSG00000287596 | 16,885 | 16,885 | ENSG00000287596 | dELS_flank | ENSG00000166415 | 70,706 | ENSG00000287596 | 50,507 | 50,507 | ENSG00000287596 | distal | NA | NA | |
15 | 53,471,163 | T | C | false | distal | 637 | rs2055407 | 0.001227 | 0.21296 | 38.142 | intergenic_variant | dELS_flank | ENSG00000166415 | 42,577 | ENSG00000287596 | 17,675 | 17,675 | ENSG00000287596 | dELS_flank | ENSG00000166415 | 69,916 | ENSG00000287596 | 51,297 | 51,297 | ENSG00000287596 | distal | NA | NA | |
15 | 53,933,911 | G | T | false | distal | 682 | rs117456216 | 0.00002 | 0.00916 | 160.58 | intergenic_variant | CA-CTCF_flank | ENSG00000137766 | 44,289 | ENSG00000259669 | 12,797 | 12,797 | ENSG00000259669 | CA-CTCF_flank | ENSG00000137766 | 44,289 | ENSG00000280362 | 23,141 | 23,141 | ENSG00000280362 | distal | NA | NA | |
15 | 53,933,931 | T | G | false | distal | 682 | rs2019409 | 0.000024 | 0.02446 | 123.7 | intergenic_variant | CA-CTCF_flank | ENSG00000137766 | 44,269 | ENSG00000259669 | 12,777 | 12,777 | ENSG00000259669 | CA-CTCF_flank | ENSG00000137766 | 44,269 | ENSG00000280362 | 23,161 | 23,161 | ENSG00000280362 | distal | NA | NA | |
15 | 53,934,133 | C | T | false | distal | 682 | rs189139834 | 0.00004 | 0.003919 | 9.8123 | intergenic_variant | CA-CTCF_flank | ENSG00000137766 | 44,067 | ENSG00000259669 | 12,575 | 12,575 | ENSG00000259669 | CA-CTCF_flank | ENSG00000137766 | 44,067 | ENSG00000280362 | 23,363 | 23,363 | ENSG00000280362 | distal | NA | NA | |
15 | 53,934,304 | C | T | false | distal | 682 | rs117718399 | 0.000033 | 0.003181 | 7.5603 | intergenic_variant | CA-CTCF_flank | ENSG00000137766 | 43,896 | ENSG00000259669 | 12,404 | 12,404 | ENSG00000259669 | CA-CTCF_flank | ENSG00000137766 | 43,896 | ENSG00000280362 | 23,534 | 23,534 | ENSG00000280362 | distal | NA | NA | |
15 | 53,934,795 | C | T | false | distal | 682 | rs28657914 | 0.000485 | 0.016719 | 47.668 | intergenic_variant | CA-CTCF_flank | ENSG00000137766 | 43,405 | ENSG00000259669 | 11,913 | 11,913 | ENSG00000259669 | CA-CTCF_flank | ENSG00000137766 | 43,405 | ENSG00000280362 | 24,025 | 24,025 | ENSG00000280362 | distal | NA | NA | |
15 | 53,981,678 | G | T | false | distal | 679 | rs10518746 | 0.000022 | 0.11099 | 105.45 | intron_variant | dELS | ENSG00000137766 | 2,750 | ENSG00000259669 | 1,976 | 1,976 | ENSG00000259669 | dELS | ENSG00000137766 | 3,236 | ENSG00000259669 | 2,194 | 2,194 | ENSG00000259669 | distal | NA | NA | |
15 | 55,192,705 | G | A | false | splicing | 687 | rs78560556 | 0.000051 | 0.05576 | 278.31 | splice_donor_region_variant | splice_donor_region_variant | ENSG00000137876 | 5 | ENSG00000137876 | 0 | 0 | ENSG00000137876 | splice_donor_region_variant | ENSG00000137876 | 2,302 | ENSG00000137876 | 3,923 | 2,302 | ENSG00000137876 | splicing | NA | splicing:b1 | |
15 | 55,198,809 | A | T | false | distal | 642 | rs62020097 | 0.000035 | 0.20207 | 306.55 | intergenic_variant | pELS | ENSG00000137876 | 1,850 | ENSG00000137876 | 1,759 | 1,759 | ENSG00000137876 | pELS | ENSG00000137876 | 1,850 | ENSG00000137876 | 1,759 | 1,759 | ENSG00000137876 | distal | NA | NA | |
15 | 55,198,923 | G | A | false | distal | 642 | rs28714578 | 0.000035 | 0.20198 | 306.36 | intergenic_variant | pELS | ENSG00000137876 | 1,964 | ENSG00000137876 | 1,873 | 1,873 | ENSG00000137876 | pELS | ENSG00000137876 | 1,964 | ENSG00000137876 | 1,873 | 1,873 | ENSG00000137876 | distal | NA | NA | |
15 | 55,620,677 | T | A | false | missense_variant | 624 | rs1438914 | 0.009757 | 0.11688 | 184.64 | missense_variant | missense_variant | ENSG00000166450 | 0 | ENSG00000285805 | 30,865 | 0 | ENSG00000166450 | missense_variant | ENSG00000171016 | 31,729 | ENSG00000285805 | 32,010 | 31,729 | ENSG00000171016 | missense_variant | NA | NA | |
15 | 55,997,547 | G | T | false | distal | 632 | rs2036739 | 0.000049 | 0.064845 | 101.2 | intergenic_variant | dELS_flank | ENSG00000069869 | 3,934 | ENSG00000069869 | 3,886 | 3,886 | ENSG00000069869 | dELS_flank | ENSG00000069869 | 3,934 | ENSG00000069869 | 3,886 | 3,886 | ENSG00000069869 | distal | NA | NA | |
15 | 56,059,137 | T | C | false | distal | 670 | rs1983194 | 0.000367 | 0.35732 | 65.916 | intergenic_variant | dELS | ENSG00000181827 | 28,142 | ENSG00000261333 | 12,283 | 12,283 | ENSG00000261333 | dELS | ENSG00000069869 | 65,524 | ENSG00000261333 | 12,283 | 12,283 | ENSG00000261333 | distal | NA | NA | |
15 | 56,059,297 | T | C | false | distal | 670 | rs1983195 | 0.000395 | 0.35938 | 66.052 | intergenic_variant | dELS | ENSG00000181827 | 27,982 | ENSG00000261333 | 12,123 | 12,123 | ENSG00000261333 | dELS | ENSG00000069869 | 65,684 | ENSG00000261333 | 12,123 | 12,123 | ENSG00000261333 | distal | NA | NA | |
15 | 56,093,757 | C | T | false | missense_variant | 620 | rs188930329 | 0.000034 | 0.00119 | 12.118 | missense_variant | missense_variant | ENSG00000181827 | 0 | ENSG00000181827 | 0 | 0 | ENSG00000181827 | missense_variant | ENSG00000181827 | 96,128 | ENSG00000261333 | 22,335 | 22,335 | ENSG00000261333 | missense_variant | NA | NA | |
15 | 56,093,854 | C | T | false | missense_variant | 620 | rs199658306 | 0.000036 | 0.000074 | 3.2893 | missense_variant | missense_variant | ENSG00000181827 | 0 | ENSG00000181827 | 0 | 0 | ENSG00000181827 | missense_variant | ENSG00000181827 | 96,031 | ENSG00000261333 | 22,432 | 22,432 | ENSG00000261333 | missense_variant | NA | NA | |
15 | 56,094,088 | C | T | false | missense_variant | 620 | rs183583606 | 0.000069 | 0.000798 | 5.7723 | missense_variant | missense_variant | ENSG00000181827 | 0 | ENSG00000181827 | 0 | 0 | ENSG00000181827 | missense_variant | ENSG00000181827 | 95,797 | ENSG00000261333 | 22,666 | 22,666 | ENSG00000261333 | missense_variant | NA | NA | |
15 | 56,095,143 | T | G | false | missense_variant | 620 | rs184455702 | 0.000157 | 0.000116 | 6.2418 | missense_variant | missense_variant | ENSG00000181827 | 0 | ENSG00000181827 | 0 | 0 | ENSG00000181827 | missense_variant | ENSG00000181827 | 94,742 | ENSG00000261333 | 23,721 | 23,721 | ENSG00000261333 | missense_variant | NA | NA | |
15 | 56,095,408 | C | G | false | missense_variant | 620 | rs3803460 | 0.002721 | 0.004905 | 38.429 | missense_variant | missense_variant | ENSG00000181827 | 0 | ENSG00000181827 | 0 | 0 | ENSG00000181827 | missense_variant | ENSG00000181827 | 94,477 | ENSG00000261333 | 23,986 | 23,986 | ENSG00000261333 | missense_variant | NA | NA | |
15 | 56,095,762 | G | A | false | missense_variant | 620 | rs201488404 | 0.000027 | 0.000604 | 6.3824 | missense_variant | missense_variant | ENSG00000181827 | 0 | ENSG00000181827 | 0 | 0 | ENSG00000181827 | missense_variant | ENSG00000181827 | 94,123 | ENSG00000261333 | 24,340 | 24,340 | ENSG00000261333 | missense_variant | NA | NA | |
15 | 56,377,924 | A | G | false | distal | 648 | rs149347672 | 0.000033 | 0.003246 | 20.551 | intron_variant | intron_variant | ENSG00000151575 | 4,419 | ENSG00000151575 | 3,300 | 3,300 | ENSG00000151575 | intron_variant | ENSG00000151575 | 12,477 | ENSG00000151575 | 4,485 | 4,485 | ENSG00000151575 | distal | NA | NA | |
15 | 56,378,749 | G | T | false | distal | 648 | rs143930904 | 0.000043 | 0.009276 | 56.391 | intron_variant | intron_variant | ENSG00000151575 | 5,202 | ENSG00000151575 | 4,125 | 4,125 | ENSG00000151575 | intron_variant | ENSG00000151575 | 13,302 | ENSG00000151575 | 5,310 | 5,310 | ENSG00000151575 | distal | NA | NA | |
15 | 56,557,207 | T | G | false | distal | 688 | rs2676765 | 0.00035 | 0.03099 | 319.14 | intron_variant | TF_flank | ENSG00000137871 | 72,968 | ENSG00000260392 | 6,560 | 6,560 | ENSG00000260392 | TF_flank | ENSG00000138587 | 92,069 | ENSG00000260392 | 6,560 | 6,560 | ENSG00000260392 | distal | NA | NA | |
15 | 56,557,840 | T | C | false | distal | 688 | rs72744921 | 0.000102 | 0.066622 | 135.51 | intron_variant | TF_flank | ENSG00000137871 | 72,335 | ENSG00000260392 | 7,193 | 7,193 | ENSG00000260392 | TF_flank | ENSG00000138587 | 92,702 | ENSG00000260392 | 7,193 | 7,193 | ENSG00000260392 | distal | NA | NA | |
15 | 56,698,776 | T | C | false | 3_prime_UTR_variant | 657 | rs28526288 | 0.000135 | 0.056722 | 124.69 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000137871 | 0 | ENSG00000137871 | 2,156 | 0 | ENSG00000137871 | 3_prime_UTR_variant | ENSG00000137871 | 34,717 | ENSG00000137871 | 5,569 | 5,569 | ENSG00000137871 | 3_prime_UTR_variant | NA | NA | |
15 | 56,699,168 | C | A | false | 3_prime_UTR_variant | 659 | rs11854254 | 0.000083 | 0.22773 | 126.28 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000137871 | 0 | ENSG00000137871 | 1,764 | 0 | ENSG00000137871 | 3_prime_UTR_variant | ENSG00000137871 | 34,325 | ENSG00000137871 | 5,961 | 5,961 | ENSG00000137871 | 3_prime_UTR_variant | NA | NA | |
15 | 56,731,628 | G | A | false | distal | 643 | rs12898521 | 0.00325 | 0.39446 | 524.37 | intron_variant | pELS | ENSG00000137871 | 1,829 | ENSG00000137871 | 975 | 975 | ENSG00000137871 | pELS | ENSG00000137871 | 1,865 | ENSG00000274667 | 1,016 | 1,016 | ENSG00000274667 | distal | NA | NA | |
15 | 57,060,500 | T | C | false | distal | 640 | rs11853675 | 0.000225 | 0.052861 | 142.48 | intron_variant | dELS_flank | ENSG00000140262 | 3,249 | ENSG00000140262 | 3,247 | 3,247 | ENSG00000140262 | dELS_flank | ENSG00000140262 | 141,351 | ENSG00000140262 | 3,247 | 3,247 | ENSG00000140262 | distal | NA | NA | |
15 | 57,060,695 | T | C | false | distal | 640 | rs2585110 | 0.000249 | 0.045517 | 303.33 | intron_variant | dELS_flank | ENSG00000140262 | 3,054 | ENSG00000140262 | 3,052 | 3,052 | ENSG00000140262 | dELS_flank | ENSG00000140262 | 141,546 | ENSG00000140262 | 3,052 | 3,052 | ENSG00000140262 | distal | NA | NA | |
15 | 57,222,676 | A | C | false | distal | 676 | rs12906566 | 0.000263 | 0.45581 | 581.54 | intron_variant | dELS | ENSG00000140262 | 3,085 | ENSG00000140262 | 3,085 | 3,085 | ENSG00000140262 | dELS | ENSG00000140262 | 3,209 | ENSG00000140262 | 3,638 | 3,209 | ENSG00000140262 | distal | NA | NA | |
15 | 57,223,839 | A | G | false | distal | 676 | rs12912353 | 0.000288 | 0.45609 | 581.86 | intron_variant | dELS | ENSG00000140262 | 4,248 | ENSG00000140262 | 4,248 | 4,248 | ENSG00000140262 | dELS | ENSG00000140262 | 4,372 | ENSG00000140262 | 4,801 | 4,372 | ENSG00000140262 | distal | NA | NA | |
15 | 57,437,091 | G | C | true | distal | 634 | rs4774940 | 0.971675 | eGFRcys | 0.32101 | 53.552 | intron_variant | dELS_flank | ENSG00000128849 | 893 | ENSG00000128849 | 893 | 893 | ENSG00000128849 | dELS_flank | ENSG00000128849 | 60,585 | ENSG00000252984 | 31,915 | 31,915 | ENSG00000252984 | distal | NA | NA |
15 | 57,440,576 | C | T | false | distal | 634 | rs17820299 | 0.002014 | 0.33622 | 48.648 | intron_variant | dELS_flank | ENSG00000128849 | 104 | ENSG00000128849 | 2,558 | 104 | ENSG00000128849 | dELS_flank | ENSG00000128849 | 64,070 | ENSG00000252984 | 35,400 | 35,400 | ENSG00000252984 | distal | NA | NA | |
15 | 57,500,481 | C | T | true | distal | 667 | rs181592246 | 0.999995 | eGFR,eGFRcys,sCr | 0.005232 | 7.3503 | intron_variant | dELS | ENSG00000128849 | 16,298 | ENSG00000261489 | 22,151 | 16,298 | ENSG00000128849 | dELS | ENSG00000263155 | 91,422 | ENSG00000261489 | 22,151 | 22,151 | ENSG00000261489 | distal | NA | NA |
15 | 57,501,492 | G | A | false | distal | 667 | rs35204548 | 0.000521 | 0.019664 | 21.415 | intron_variant | dELS | ENSG00000128849 | 15,287 | ENSG00000261489 | 23,162 | 15,287 | ENSG00000128849 | dELS | ENSG00000263155 | 90,411 | ENSG00000261489 | 23,162 | 23,162 | ENSG00000261489 | distal | NA | NA | |
15 | 57,502,183 | T | C | false | distal | 667 | rs55815547 | 0.000077 | 0.01381 | 19.418 | intron_variant | dELS | ENSG00000128849 | 14,596 | ENSG00000261489 | 23,853 | 14,596 | ENSG00000128849 | dELS | ENSG00000263155 | 89,720 | ENSG00000261489 | 23,853 | 23,853 | ENSG00000261489 | distal | NA | NA | |
15 | 57,504,516 | G | A | false | distal | 667 | rs148794634 | 0.000176 | 0.003106 | 9.2239 | intron_variant | dELS | ENSG00000128849 | 12,263 | ENSG00000261265 | 22,670 | 12,263 | ENSG00000128849 | dELS | ENSG00000263155 | 87,387 | ENSG00000261265 | 24,492 | 24,492 | ENSG00000261265 | distal | NA | NA | |
15 | 57,504,544 | C | G | false | distal | 667 | rs575795129 | 0.000098 | 0.001162 | 13.237 | intron_variant | dELS | ENSG00000128849 | 12,235 | ENSG00000261265 | 22,642 | 12,235 | ENSG00000128849 | dELS | ENSG00000263155 | 87,359 | ENSG00000261265 | 24,464 | 24,464 | ENSG00000261265 | distal | NA | NA | |
15 | 57,504,676 | G | A | false | distal | 667 | rs142534344 | 0.002629 | 0.014485 | 18.377 | intron_variant | dELS | ENSG00000128849 | 12,103 | ENSG00000261265 | 22,510 | 12,103 | ENSG00000128849 | dELS | ENSG00000263155 | 87,227 | ENSG00000261265 | 24,332 | 24,332 | ENSG00000261265 | distal | NA | NA | |
15 | 57,504,747 | A | C | false | distal | 667 | rs79332783 | 0.000106 | 0.001883 | 6.4933 | intron_variant | dELS | ENSG00000128849 | 12,032 | ENSG00000261265 | 22,439 | 12,032 | ENSG00000128849 | dELS | ENSG00000263155 | 87,156 | ENSG00000261265 | 24,261 | 24,261 | ENSG00000261265 | distal | NA | NA | |
15 | 57,505,316 | G | A | false | distal | 667 | rs553581076 | 0.000077 | 0.00129 | 6.3463 | intron_variant | dELS | ENSG00000128849 | 11,463 | ENSG00000261265 | 21,870 | 11,463 | ENSG00000128849 | dELS | ENSG00000263155 | 86,587 | ENSG00000261265 | 23,692 | 23,692 | ENSG00000261265 | distal | NA | NA | |
15 | 57,506,583 | C | T | false | distal | 667 | rs79895096 | 0.000365 | 0.009374 | 17.9 | intron_variant | dELS | ENSG00000128849 | 10,196 | ENSG00000261265 | 20,603 | 10,196 | ENSG00000128849 | dELS | ENSG00000263155 | 85,320 | ENSG00000261265 | 22,425 | 22,425 | ENSG00000261265 | distal | NA | NA | |
15 | 57,506,700 | C | T | false | distal | 667 | rs142999174 | 0.000383 | 0.013486 | 27.587 | intron_variant | dELS | ENSG00000128849 | 10,079 | ENSG00000261265 | 20,486 | 10,079 | ENSG00000128849 | dELS | ENSG00000263155 | 85,203 | ENSG00000261265 | 22,308 | 22,308 | ENSG00000261265 | distal | NA | NA |
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