chrom stringclasses 12
values | pos int64 36.1k 249M | ref stringclasses 4
values | alt stringclasses 4
values | label bool 2
classes | subset stringclasses 8
values | match_group int64 0 2.16k | rsid stringlengths 3 15 | pip float64 0 1 | traits stringclasses 279
values | MAF float64 0 0.5 | ld_score float64 1.01 3.79k | consequence stringclasses 13
values | consequence_cre stringclasses 29
values | exon_closest_pc_gene_id stringlengths 15 15 | distance_exon_pc int64 0 1.68M | exon_closest_nc_gene_id stringlengths 15 15 | distance_exon_nc int64 0 507k | distance_exon int64 0 507k | exon_closest_gene_id stringlengths 15 15 | consequence_final stringclasses 28
values | tss_closest_pc_gene_id stringlengths 15 15 | distance_tss_pc int64 0 1.69M | tss_closest_nc_gene_id stringlengths 15 15 | distance_tss_nc int64 0 531k | distance_tss int64 0 531k | tss_closest_gene_id stringlengths 15 15 | consequence_group stringclasses 8
values | distance_tss_pc_bin stringclasses 4
values | distance_exon_pc_bin stringclasses 7
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15 | 34,855,091 | C | G | false | 3_prime_UTR_variant | 659 | rs3743122 | 0.000007 | 0.23649 | 125.87 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000021776 | 0 | ENSG00000021776 | 1,259 | 0 | ENSG00000021776 | 3_prime_UTR_variant | ENSG00000159251 | 59,541 | ENSG00000259751 | 4,695 | 4,695 | ENSG00000259751 | 3_prime_UTR_variant | NA | NA | |
15 | 34,856,847 | G | A | false | missense_variant | 619 | rs61741130 | 0.00005 | 0.000286 | 63.304 | missense_variant | missense_variant | ENSG00000021776 | 0 | ENSG00000021776 | 0 | 0 | ENSG00000021776 | missense_variant | ENSG00000159251 | 61,297 | ENSG00000021776 | 6,376 | 6,376 | ENSG00000021776 | missense_variant | NA | NA | |
15 | 34,856,907 | G | A | false | missense_variant | 619 | rs184384582 | 0.000004 | 0.001156 | 7.5268 | missense_variant | missense_variant | ENSG00000021776 | 0 | ENSG00000021776 | 0 | 0 | ENSG00000021776 | missense_variant | ENSG00000159251 | 61,357 | ENSG00000021776 | 6,316 | 6,316 | ENSG00000021776 | missense_variant | NA | NA | |
15 | 35,113,928 | C | T | false | distal | 646 | rs1458888 | 0.000034 | 0.3411 | 69.949 | intron_variant | CA_flank | ENSG00000255192 | 28,632 | ENSG00000259592 | 7,644 | 7,644 | ENSG00000259592 | CA_flank | ENSG00000255192 | 28,632 | ENSG00000259592 | 8,155 | 8,155 | ENSG00000259592 | distal | NA | NA | |
15 | 35,180,117 | G | A | false | distal | 688 | rs116329976 | 0.000026 | 0.040235 | 116.34 | intergenic_variant | TF_flank | ENSG00000255192 | 94,821 | ENSG00000259516 | 1,681 | 1,681 | ENSG00000259516 | TF_flank | ENSG00000255192 | 94,821 | ENSG00000259516 | 1,681 | 1,681 | ENSG00000259516 | distal | NA | NA | |
15 | 35,545,096 | A | T | false | distal | 644 | rs8024137 | 0.000061 | 0.1521 | 130.05 | intron_variant | pELS | ENSG00000134146 | 1,022 | ENSG00000134146 | 1,022 | 1,022 | ENSG00000134146 | pELS | ENSG00000134146 | 1,068 | ENSG00000134146 | 1,056 | 1,056 | ENSG00000134146 | distal | NA | NA | |
15 | 36,301,635 | A | G | false | distal | 647 | rs11073164 | 0.000027 | 0.31901 | 36.197 | intergenic_variant | CA_flank | ENSG00000186073 | 277,990 | ENSG00000259395 | 40,103 | 40,103 | ENSG00000259395 | CA_flank | ENSG00000186073 | 277,990 | ENSG00000259395 | 40,103 | 40,103 | ENSG00000259395 | distal | NA | NA | |
15 | 36,579,759 | G | C | false | 5_prime_UTR_variant | 630 | rs185043261 | 0.00001 | 0.002817 | 9.4208 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000186073 | 0 | ENSG00000186073 | 0 | 0 | ENSG00000186073 | 5_prime_UTR_variant | ENSG00000186073 | 48 | ENSG00000186073 | 7 | 7 | ENSG00000186073 | 5_prime_UTR_variant | NA | NA | |
15 | 36,679,589 | C | G | false | distal | 651 | rs192817113 | 0.000011 | 0.002314 | 7.9783 | intron_variant | intron_variant | ENSG00000186073 | 11,369 | ENSG00000261191 | 10,491 | 10,491 | ENSG00000261191 | intron_variant | ENSG00000186073 | 22,419 | ENSG00000261191 | 10,491 | 10,491 | ENSG00000261191 | distal | NA | NA | |
15 | 36,679,853 | G | A | false | distal | 651 | rs141916479 | 0.000009 | 0.011439 | 11.079 | intron_variant | intron_variant | ENSG00000186073 | 11,633 | ENSG00000261191 | 10,755 | 10,755 | ENSG00000261191 | intron_variant | ENSG00000186073 | 22,155 | ENSG00000261191 | 10,755 | 10,755 | ENSG00000261191 | distal | NA | NA | |
15 | 36,989,267 | C | A | false | distal | 670 | rs28573906 | 0.000017 | 0.35384 | 58.897 | intron_variant | dELS | ENSG00000134138 | 38,866 | ENSG00000134138 | 14,490 | 14,490 | ENSG00000134138 | dELS | ENSG00000134138 | 105,297 | ENSG00000134138 | 14,490 | 14,490 | ENSG00000134138 | distal | NA | NA | |
15 | 37,102,511 | G | C | false | non_coding_transcript_exon_variant | 689 | rs555141341 | 0.000026 | 0.00272 | 10.111 | non_coding_transcript_exon_variant | non_coding_transcript_exon_variant | ENSG00000134138 | 1,211 | ENSG00000288808 | 0 | 0 | ENSG00000288808 | non_coding_transcript_exon_variant | ENSG00000134138 | 1,211 | ENSG00000288808 | 312 | 312 | ENSG00000288808 | non_coding_transcript_exon_variant | NA | NA | |
15 | 37,943,351 | G | A | false | missense_variant | 626 | rs75198817 | 0.000033 | 0.000245 | 134.02 | missense_variant | missense_variant | ENSG00000166069 | 0 | ENSG00000166069 | 0 | 0 | ENSG00000166069 | missense_variant | ENSG00000166069 | 8,707 | ENSG00000166069 | 8,093 | 8,093 | ENSG00000166069 | missense_variant | NA | NA | |
15 | 38,263,437 | A | G | false | distal | 677 | rs56152774 | 0.000265 | 0.2576 | 70.98 | intron_variant | dELS | ENSG00000166068 | 4,736 | ENSG00000166068 | 10,219 | 4,736 | ENSG00000166068 | dELS | ENSG00000166068 | 10,255 | ENSG00000166068 | 10,588 | 10,255 | ENSG00000166068 | distal | NA | NA | |
15 | 38,555,717 | A | C | true | distal | 632 | rs6495980 | 0.92084 | EduYears | 0.06178 | 60.636 | intron_variant | dELS_flank | ENSG00000172575 | 4,103 | ENSG00000172575 | 4,103 | 4,103 | ENSG00000172575 | dELS_flank | ENSG00000172575 | 4,364 | ENSG00000172575 | 4,186 | 4,186 | ENSG00000172575 | distal | NA | NA |
15 | 38,634,634 | T | C | false | distal | 652 | rs11073344 | 0.000346 | 0.48251 | 67.168 | intron_variant | intron_variant | ENSG00000172575 | 69,058 | ENSG00000175779 | 1,379 | 1,379 | ENSG00000175779 | intron_variant | ENSG00000172575 | 69,058 | ENSG00000175779 | 6,563 | 6,563 | ENSG00000175779 | distal | NA | NA | |
15 | 39,713,571 | C | T | false | missense_variant | 624 | rs937961 | 0.000449 | 0.1168 | 216.52 | missense_variant | missense_variant | ENSG00000150667 | 0 | ENSG00000150667 | 26,093 | 0 | ENSG00000150667 | missense_variant | ENSG00000150667 | 69,269 | ENSG00000150667 | 33,875 | 33,875 | ENSG00000150667 | missense_variant | NA | NA | |
15 | 40,104,990 | C | G | true | distal | 642 | rs34245505 | 0.994785 | FEV1FVC | 0.19558 | 42.673 | intron_variant | pELS | ENSG00000104081 | 649 | ENSG00000104081 | 3,052 | 649 | ENSG00000104081 | pELS | ENSG00000104081 | 1,095 | ENSG00000104081 | 3,887 | 1,095 | ENSG00000104081 | distal | NA | NA |
15 | 40,290,298 | G | T | false | tss_proximal | 662 | rs936211 | 0.000301 | 0.21843 | 40.71 | intron_variant | dELS_flank | ENSG00000137841 | 215 | ENSG00000137841 | 215 | 215 | ENSG00000137841 | tss_proximal | ENSG00000137841 | 373 | ENSG00000137841 | 725 | 373 | ENSG00000137841 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 40,301,230 | G | A | false | 3_prime_UTR_variant | 655 | rs2412508 | 0.003131 | 0.0707 | 27.24 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000137841 | 0 | ENSG00000259307 | 204 | 0 | ENSG00000137841 | 3_prime_UTR_variant | ENSG00000137841 | 6,594 | ENSG00000259307 | 559 | 559 | ENSG00000259307 | 3_prime_UTR_variant | NA | NA | |
15 | 40,328,359 | A | G | false | distal | 679 | rs11856877 | 0.002226 | 0.11256 | 27.506 | intergenic_variant | dELS | ENSG00000259330 | 1,643 | ENSG00000259330 | 1,643 | 1,643 | ENSG00000259330 | dELS | ENSG00000259330 | 4,666 | ENSG00000259330 | 3,142 | 3,142 | ENSG00000259330 | distal | NA | NA | |
15 | 40,342,630 | C | T | false | distal | 642 | rs2118958 | 0.000781 | 0.20079 | 87.658 | intergenic_variant | pELS | ENSG00000188549 | 1,690 | ENSG00000188549 | 1,709 | 1,690 | ENSG00000188549 | pELS | ENSG00000188549 | 1,690 | ENSG00000188549 | 1,709 | 1,690 | ENSG00000188549 | distal | NA | NA | |
15 | 40,349,246 | T | C | false | distal | 642 | rs1898884 | 0.000245 | 0.20223 | 72.172 | intergenic_variant | pELS | ENSG00000233041 | 1,786 | ENSG00000233041 | 1,786 | 1,786 | ENSG00000233041 | pELS | ENSG00000233041 | 1,786 | ENSG00000233041 | 1,786 | 1,786 | ENSG00000233041 | distal | NA | NA | |
15 | 40,388,481 | T | A | false | distal | 672 | rs11070269 | 0.000111 | 0.4 | 110.76 | intron_variant | dELS | ENSG00000128944 | 684 | ENSG00000128944 | 1,007 | 684 | ENSG00000128944 | dELS | ENSG00000128944 | 5,484 | ENSG00000128944 | 1,326 | 1,326 | ENSG00000128944 | distal | NA | NA | |
15 | 40,536,483 | C | A | false | 3_prime_UTR_variant | 658 | rs2924388 | 0.002404 | 0.41544 | 377.48 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000128891 | 1,101 | ENSG00000128891 | 0 | 0 | ENSG00000128891 | 3_prime_UTR_variant | ENSG00000128891 | 28,496 | ENSG00000223313 | 6,912 | 6,912 | ENSG00000223313 | 3_prime_UTR_variant | NA | NA | |
15 | 40,553,398 | A | G | false | 3_prime_UTR_variant | 658 | rs6582 | 0.007843 | 0.38977 | 400.99 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000128891 | 0 | ENSG00000259536 | 0 | 0 | ENSG00000128891 | 3_prime_UTR_variant | ENSG00000128891 | 11,581 | ENSG00000128891 | 9,404 | 9,404 | ENSG00000128891 | 3_prime_UTR_variant | NA | NA | |
15 | 40,563,011 | T | A | false | missense_variant | 622 | rs10152546 | 0.00468 | 0.46181 | 352.92 | missense_variant | missense_variant | ENSG00000128891 | 0 | ENSG00000128891 | 0 | 0 | ENSG00000128891 | missense_variant | ENSG00000128891 | 1,968 | ENSG00000128891 | 15 | 15 | ENSG00000128891 | missense_variant | NA | NA | |
15 | 40,590,118 | A | G | false | distal | 676 | rs35842610 | 0.00602 | 0.45585 | 356.17 | intergenic_variant | dELS | ENSG00000137812 | 3,901 | ENSG00000137812 | 3,916 | 3,901 | ENSG00000137812 | dELS | ENSG00000137812 | 3,901 | ENSG00000137812 | 3,916 | 3,901 | ENSG00000137812 | distal | NA | NA | |
15 | 40,590,767 | G | A | false | distal | 676 | rs12913739 | 0.004427 | 0.45588 | 356.3 | intergenic_variant | dELS | ENSG00000137812 | 3,252 | ENSG00000137812 | 3,267 | 3,252 | ENSG00000137812 | dELS | ENSG00000137812 | 3,252 | ENSG00000137812 | 3,267 | 3,252 | ENSG00000137812 | distal | NA | NA | |
15 | 40,592,909 | A | G | false | distal | 643 | rs16970851 | 0.008252 | 0.39087 | 404.1 | intergenic_variant | pELS | ENSG00000137812 | 1,110 | ENSG00000137812 | 1,125 | 1,110 | ENSG00000137812 | pELS | ENSG00000137812 | 1,110 | ENSG00000137812 | 1,125 | 1,110 | ENSG00000137812 | distal | NA | NA | |
15 | 40,813,728 | T | G | false | missense_variant | 625 | rs690347 | 0.000126 | 0.27211 | 172.74 | missense_variant | missense_variant | ENSG00000166140 | 0 | ENSG00000166140 | 0 | 0 | ENSG00000166140 | missense_variant | ENSG00000166140 | 4,808 | ENSG00000166140 | 64 | 64 | ENSG00000166140 | missense_variant | NA | NA | |
15 | 40,946,285 | C | G | false | distal | 674 | rs74621208 | 0.000195 | 0.024841 | 37.628 | intergenic_variant | dELS | ENSG00000128965 | 6,676 | ENSG00000259405 | 2,450 | 2,450 | ENSG00000259405 | dELS | ENSG00000128965 | 6,676 | ENSG00000259405 | 2,583 | 2,583 | ENSG00000259405 | distal | NA | NA | |
15 | 40,955,379 | A | G | false | missense_variant | 618 | rs138681810 | 0.000047 | 0.000109 | 2.0464 | missense_variant | missense_variant | ENSG00000128965 | 0 | ENSG00000259405 | 6,509 | 0 | ENSG00000128965 | missense_variant | ENSG00000128965 | 1,172 | ENSG00000259405 | 6,509 | 1,172 | ENSG00000128965 | missense_variant | NA | NA | |
15 | 40,955,647 | G | A | false | missense_variant | 618 | rs144026007 | 0.000146 | 0.000558 | 2.8082 | missense_variant | missense_variant | ENSG00000128965 | 0 | ENSG00000259405 | 6,777 | 0 | ENSG00000128965 | missense_variant | ENSG00000128965 | 1,440 | ENSG00000259405 | 6,777 | 1,440 | ENSG00000128965 | missense_variant | NA | NA | |
15 | 41,034,527 | G | A | false | distal | 636 | rs191286511 | 0.0002 | 0.003573 | 414.58 | intron_variant | dELS_flank | ENSG00000128908 | 6,790 | ENSG00000259521 | 6,633 | 6,633 | ENSG00000259521 | dELS_flank | ENSG00000128965 | 80,320 | ENSG00000128908 | 6,927 | 6,927 | ENSG00000128908 | distal | NA | NA | |
15 | 41,034,986 | G | A | false | distal | 636 | rs189989927 | 0.000069 | 0.001041 | 19.716 | intron_variant | dELS_flank | ENSG00000128908 | 7,249 | ENSG00000259521 | 7,092 | 7,092 | ENSG00000259521 | dELS_flank | ENSG00000128965 | 80,779 | ENSG00000128908 | 7,386 | 7,386 | ENSG00000128908 | distal | NA | NA | |
15 | 41,035,691 | G | A | false | distal | 636 | rs56829576 | 0.000162 | 0.007604 | 141.14 | intron_variant | dELS_flank | ENSG00000128908 | 7,954 | ENSG00000259521 | 7,797 | 7,797 | ENSG00000259521 | dELS_flank | ENSG00000128908 | 80,588 | ENSG00000128908 | 8,091 | 8,091 | ENSG00000128908 | distal | NA | NA | |
15 | 41,035,725 | C | T | false | distal | 636 | rs190051171 | 0.000195 | 0.003575 | 414.37 | intron_variant | dELS_flank | ENSG00000128908 | 7,988 | ENSG00000259521 | 7,831 | 7,831 | ENSG00000259521 | dELS_flank | ENSG00000128908 | 80,554 | ENSG00000128908 | 8,125 | 8,125 | ENSG00000128908 | distal | NA | NA | |
15 | 41,035,754 | G | A | false | distal | 636 | rs570749840 | 0.000199 | 0.002046 | 15.064 | intron_variant | dELS_flank | ENSG00000128908 | 8,017 | ENSG00000259521 | 7,860 | 7,860 | ENSG00000259521 | dELS_flank | ENSG00000128908 | 80,525 | ENSG00000128908 | 8,154 | 8,154 | ENSG00000128908 | distal | NA | NA | |
15 | 41,047,499 | T | C | false | missense_variant | 628 | rs34153025 | 0.006064 | 0.022454 | 53.449 | missense_variant | missense_variant | ENSG00000128908 | 0 | ENSG00000128908 | 0 | 0 | ENSG00000128908 | missense_variant | ENSG00000128908 | 68,780 | ENSG00000128908 | 11,225 | 11,225 | ENSG00000128908 | missense_variant | NA | NA | |
15 | 41,145,955 | G | A | true | distal | 646 | rs548932774 | 0.92787 | Height | 0.34686 | 334.8 | intergenic_variant | CA_flank | ENSG00000128908 | 29,674 | ENSG00000283133 | 11,219 | 11,219 | ENSG00000283133 | CA_flank | ENSG00000128908 | 29,674 | ENSG00000283133 | 11,386 | 11,386 | ENSG00000283133 | distal | NA | NA |
15 | 41,524,679 | T | C | false | tss_proximal | 686 | rs12911435 | 0.000411 | 0.027519 | 47.821 | intron_variant | CA_flank | ENSG00000103932 | 311 | ENSG00000103932 | 311 | 311 | ENSG00000103932 | tss_proximal | ENSG00000103932 | 2,290 | ENSG00000103932 | 527 | 527 | ENSG00000103932 | tss_proximal | tss_prox:b2 | tss_prox:b1 | |
15 | 41,575,584 | A | T | false | distal | 672 | rs3784283 | 0.000081 | 0.40373 | 177.49 | intron_variant | dELS | ENSG00000092445 | 871 | ENSG00000092445 | 1,750 | 871 | ENSG00000092445 | dELS | ENSG00000092445 | 4,906 | ENSG00000092445 | 1,750 | 1,750 | ENSG00000092445 | distal | NA | NA | |
15 | 41,722,938 | C | G | false | distal | 648 | rs185869302 | 0.000091 | 0.003259 | 34.531 | intron_variant | intron_variant | ENSG00000174197 | 4,241 | ENSG00000174197 | 4,241 | 4,241 | ENSG00000174197 | intron_variant | ENSG00000174197 | 11,615 | ENSG00000270702 | 4,265 | 4,265 | ENSG00000270702 | distal | NA | NA | |
15 | 41,723,283 | G | C | false | distal | 648 | rs77945123 | 0.000341 | 0.007267 | 22.801 | intron_variant | intron_variant | ENSG00000174197 | 3,896 | ENSG00000174197 | 3,896 | 3,896 | ENSG00000174197 | intron_variant | ENSG00000174197 | 11,270 | ENSG00000270702 | 4,610 | 4,610 | ENSG00000270702 | distal | NA | NA | |
15 | 41,723,377 | A | G | true | distal | 648 | rs117183161 | 0.92516 | Height | 0.006788 | 28.517 | intron_variant | intron_variant | ENSG00000174197 | 3,802 | ENSG00000174197 | 3,802 | 3,802 | ENSG00000174197 | intron_variant | ENSG00000174197 | 11,176 | ENSG00000270702 | 4,704 | 4,704 | ENSG00000270702 | distal | NA | NA |
15 | 41,729,314 | T | C | false | missense_variant | 621 | rs17677811 | 0.000115 | 0.061628 | 81.57 | missense_variant | missense_variant | ENSG00000174197 | 0 | ENSG00000174197 | 0 | 0 | ENSG00000174197 | missense_variant | ENSG00000174197 | 5,239 | ENSG00000270702 | 10,641 | 5,239 | ENSG00000174197 | missense_variant | NA | NA | |
15 | 41,766,760 | A | C | false | missense_variant | 629 | rs199779997 | 0.000059 | 0.004358 | 11.928 | missense_variant | missense_variant | ENSG00000174197 | 0 | ENSG00000174197 | 0 | 0 | ENSG00000174197 | missense_variant | ENSG00000137802 | 7,723 | ENSG00000174197 | 3,353 | 3,353 | ENSG00000174197 | missense_variant | NA | NA | |
15 | 41,823,228 | A | G | false | splicing | 687 | rs1197688 | 0.000196 | 0.15121 | 139.53 | splice_donor_region_variant | splice_donor_region_variant | ENSG00000137802 | 5 | ENSG00000137802 | 5 | 5 | ENSG00000137802 | splice_donor_region_variant | ENSG00000243789 | 4,863 | ENSG00000137802 | 577 | 577 | ENSG00000137802 | splicing | NA | splicing:b1 | |
15 | 41,851,053 | G | A | false | splicing | 687 | rs28627803 | 0.00178 | 0.19258 | 75.454 | splice_donor_region_variant | splice_donor_region_variant | ENSG00000137877 | 5 | ENSG00000137877 | 480 | 5 | ENSG00000137877 | splice_donor_region_variant | ENSG00000243708 | 4,251 | ENSG00000137877 | 480 | 480 | ENSG00000137877 | splicing | NA | splicing:b1 | |
15 | 42,053,597 | C | T | false | distal | 632 | rs72727740 | 0.000083 | 0.060545 | 82.974 | intergenic_variant | dELS_flank | ENSG00000188089 | 2,406 | ENSG00000188089 | 3,925 | 2,406 | ENSG00000188089 | dELS_flank | ENSG00000188089 | 2,406 | ENSG00000188089 | 3,925 | 2,406 | ENSG00000188089 | distal | NA | NA | |
15 | 42,156,636 | T | C | false | 5_prime_UTR_variant | 630 | rs146042506 | 0.000139 | 0.003253 | 26.431 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000168907 | 0 | ENSG00000168907 | 0 | 0 | ENSG00000168907 | 5_prime_UTR_variant | ENSG00000168907 | 0 | ENSG00000168907 | 0 | 0 | ENSG00000168907 | 5_prime_UTR_variant | NA | NA | |
15 | 42,351,348 | C | A | false | missense_variant | 629 | rs140454978 | 0.000221 | 0.002266 | 8.5548 | missense_variant | missense_variant | ENSG00000214013 | 0 | ENSG00000214013 | 0 | 0 | ENSG00000214013 | missense_variant | ENSG00000092529 | 8,149 | ENSG00000258461 | 3,244 | 3,244 | ENSG00000258461 | missense_variant | NA | NA | |
15 | 42,406,555 | T | G | false | 5_prime_UTR_variant | 631 | rs28364514 | 0.00017 | 0.026085 | 151.12 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000092529 | 0 | ENSG00000092529 | 0 | 0 | ENSG00000092529 | 5_prime_UTR_variant | ENSG00000092529 | 1,664 | ENSG00000092529 | 75 | 75 | ENSG00000092529 | 5_prime_UTR_variant | NA | NA | |
15 | 42,451,896 | A | G | false | missense_variant | 624 | rs12440118 | 0.005794 | 0.15353 | 160.05 | missense_variant | missense_variant | ENSG00000103994 | 0 | ENSG00000201077 | 24,198 | 0 | ENSG00000103994 | missense_variant | ENSG00000103994 | 3,597 | ENSG00000201077 | 24,198 | 3,597 | ENSG00000103994 | missense_variant | NA | NA | |
15 | 42,548,847 | G | A | false | 5_prime_UTR_variant | 630 | rs200759756 | 0.000146 | 0.003009 | 18.178 | 5_prime_UTR_variant | 5_prime_UTR_variant | ENSG00000137814 | 0 | ENSG00000137814 | 0 | 0 | ENSG00000137814 | 5_prime_UTR_variant | ENSG00000137814 | 8 | ENSG00000137814 | 8 | 8 | ENSG00000137814 | 5_prime_UTR_variant | NA | NA | |
15 | 42,739,388 | A | G | false | 3_prime_UTR_variant | 655 | rs34960375 | 0.00011 | 0.075377 | 147.45 | 3_prime_UTR_variant | 3_prime_UTR_variant | ENSG00000128881 | 0 | ENSG00000246283 | 152 | 0 | ENSG00000128881 | 3_prime_UTR_variant | ENSG00000140326 | 2,259 | ENSG00000246283 | 269 | 269 | ENSG00000246283 | 3_prime_UTR_variant | NA | NA | |
15 | 43,083,490 | C | T | false | distal | 650 | rs12914014 | 0.000114 | 0.107 | 98.331 | intron_variant | intron_variant | ENSG00000159459 | 773 | ENSG00000159459 | 773 | 773 | ENSG00000159459 | intron_variant | ENSG00000159459 | 22,531 | ENSG00000159459 | 22,597 | 22,531 | ENSG00000159459 | distal | NA | NA | |
15 | 43,128,613 | C | T | false | distal | 674 | rs117586791 | 0.000674 | 0.022883 | 150.15 | intron_variant | dELS | ENSG00000137842 | 4,548 | ENSG00000285080 | 2,354 | 2,354 | ENSG00000285080 | dELS | ENSG00000137842 | 4,548 | ENSG00000260928 | 2,394 | 2,394 | ENSG00000260928 | distal | NA | NA | |
15 | 43,186,313 | C | T | false | tss_proximal | 685 | rs530118 | 0.000265 | 0.3223 | 290.59 | intron_variant | PLS_flank | ENSG00000166946 | 79 | ENSG00000166946 | 79 | 79 | ENSG00000166946 | tss_proximal | ENSG00000166946 | 909 | ENSG00000166946 | 372 | 372 | ENSG00000166946 | tss_proximal | tss_prox:b1 | tss_prox:b0 | |
15 | 43,361,123 | C | T | false | missense_variant | 626 | rs149461798 | 0.000042 | 0.000016 | 12.765 | missense_variant | missense_variant | ENSG00000140265 | 0 | ENSG00000140265 | 0 | 0 | ENSG00000140265 | missense_variant | ENSG00000140265 | 8,552 | ENSG00000137822 | 8,097 | 8,097 | ENSG00000137822 | missense_variant | NA | NA | |
15 | 43,361,215 | C | T | false | missense_variant | 626 | rs146256400 | 0.000141 | 0.001321 | 9.6254 | missense_variant | missense_variant | ENSG00000140265 | 0 | ENSG00000140265 | 0 | 0 | ENSG00000140265 | missense_variant | ENSG00000140265 | 8,460 | ENSG00000137822 | 8,005 | 8,005 | ENSG00000137822 | missense_variant | NA | NA | |
15 | 43,361,254 | G | A | false | missense_variant | 626 | rs202117016 | 0.000396 | 0.00216 | 18.733 | missense_variant | missense_variant | ENSG00000140265 | 0 | ENSG00000140265 | 0 | 0 | ENSG00000140265 | missense_variant | ENSG00000140265 | 8,421 | ENSG00000137822 | 7,966 | 7,966 | ENSG00000137822 | missense_variant | NA | NA | |
15 | 43,361,263 | T | C | false | missense_variant | 626 | rs144329084 | 0.00009 | 0.000712 | 9.5938 | missense_variant | missense_variant | ENSG00000140265 | 0 | ENSG00000140265 | 0 | 0 | ENSG00000140265 | missense_variant | ENSG00000140265 | 8,412 | ENSG00000137822 | 7,957 | 7,957 | ENSG00000137822 | missense_variant | NA | NA | |
15 | 43,361,417 | A | G | false | missense_variant | 626 | rs187725072 | 0.000036 | 0.000206 | 11.754 | missense_variant | missense_variant | ENSG00000140265 | 0 | ENSG00000140265 | 0 | 0 | ENSG00000140265 | missense_variant | ENSG00000140265 | 8,258 | ENSG00000137822 | 7,803 | 7,803 | ENSG00000137822 | missense_variant | NA | NA | |
15 | 43,828,361 | T | G | false | missense_variant | 624 | rs678084 | 0.001257 | 0.17954 | 307.11 | missense_variant | missense_variant | ENSG00000092470 | 0 | ENSG00000140259 | 18,228 | 0 | ENSG00000092470 | missense_variant | ENSG00000092470 | 1,358 | ENSG00000140259 | 18,228 | 1,358 | ENSG00000092470 | missense_variant | NA | NA | |
15 | 43,928,198 | A | G | false | distal | 669 | rs11070414 | 0.003165 | 0.087133 | 460.19 | intron_variant | dELS | ENSG00000171877 | 3,883 | ENSG00000171877 | 3,888 | 3,883 | ENSG00000171877 | dELS | ENSG00000171877 | 3,883 | ENSG00000171877 | 18,270 | 3,883 | ENSG00000171877 | distal | NA | NA | |
15 | 43,988,729 | G | A | false | distal | 688 | rs112159895 | 0.000115 | 0.065178 | 83.96 | intron_variant | TF_flank | ENSG00000171877 | 64,414 | ENSG00000185607 | 331 | 331 | ENSG00000185607 | TF_flank | ENSG00000171877 | 64,414 | ENSG00000185607 | 1,454 | 1,454 | ENSG00000185607 | distal | NA | NA | |
15 | 44,402,637 | T | A | false | tss_proximal | 661 | rs66479411 | 0.000213 | 0.036518 | 45.129 | intron_variant | intron_variant | ENSG00000166734 | 249 | ENSG00000259595 | 47 | 47 | ENSG00000259595 | tss_proximal | ENSG00000166734 | 413 | ENSG00000166734 | 3,692 | 413 | ENSG00000166734 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 44,551,048 | G | C | false | tss_proximal | 686 | rs10152710 | 0.000292 | 0.025237 | 366.53 | intron_variant | dELS_flank | ENSG00000104131 | 117 | ENSG00000104131 | 117 | 117 | ENSG00000104131 | tss_proximal | ENSG00000104131 | 3,575 | ENSG00000104131 | 364 | 364 | ENSG00000104131 | tss_proximal | tss_prox:b2 | tss_prox:b1 | |
15 | 44,755,375 | C | T | false | missense_variant | 617 | rs3100139 | 0.00024 | 0.16147 | 151.73 | missense_variant | missense_variant | ENSG00000185880 | 0 | ENSG00000185880 | 0 | 0 | ENSG00000185880 | missense_variant | ENSG00000185880 | 3,398 | ENSG00000185880 | 2,456 | 2,456 | ENSG00000185880 | missense_variant | NA | NA | |
15 | 44,857,244 | A | G | false | distal | 688 | rs56822449 | 0.000243 | 0.029717 | 121.6 | intron_variant | TF_flank | ENSG00000185880 | 89,414 | ENSG00000259479 | 4,540 | 4,540 | ENSG00000259479 | TF_flank | ENSG00000185880 | 98,469 | ENSG00000259479 | 4,605 | 4,605 | ENSG00000259479 | distal | NA | NA | |
15 | 45,105,795 | C | T | false | missense_variant | 629 | rs138353181 | 0.000024 | 0.00771 | 14.238 | missense_variant | missense_variant | ENSG00000140279 | 0 | ENSG00000140279 | 0 | 0 | ENSG00000140279 | missense_variant | ENSG00000140279 | 8,365 | ENSG00000140279 | 3,937 | 3,937 | ENSG00000140279 | missense_variant | NA | NA | |
15 | 45,116,735 | T | C | false | splicing | 687 | rs2576092 | 0.00011 | 0.07895 | 126.43 | splice_donor_region_variant | splice_donor_region_variant | ENSG00000140274 | 5 | ENSG00000140274 | 0 | 0 | ENSG00000140274 | splice_donor_region_variant | ENSG00000140274 | 2,408 | ENSG00000140274 | 2,260 | 2,260 | ENSG00000140274 | splicing | NA | splicing:b1 | |
15 | 45,328,414 | T | C | false | distal | 639 | rs1980288 | 0.000332 | 0.24561 | 318.02 | intergenic_variant | dELS_flank | ENSG00000171766 | 32,709 | ENSG00000259433 | 1,794 | 1,794 | ENSG00000259433 | dELS_flank | ENSG00000171766 | 48,620 | ENSG00000259433 | 4,219 | 4,219 | ENSG00000259433 | distal | NA | NA | |
15 | 45,403,184 | G | A | false | missense_variant | 625 | rs7182723 | 0.000551 | 0.25495 | 319.96 | missense_variant | missense_variant | ENSG00000171763 | 0 | ENSG00000171763 | 0 | 0 | ENSG00000171763 | missense_variant | ENSG00000171763 | 847 | ENSG00000171763 | 808 | 808 | ENSG00000171763 | missense_variant | NA | NA | |
15 | 45,523,777 | G | A | false | distal | 642 | rs12907319 | 0.00002 | 0.19937 | 130.79 | intron_variant | pELS | ENSG00000104154 | 1,021 | ENSG00000104154 | 1,540 | 1,021 | ENSG00000104154 | pELS | ENSG00000104154 | 1,021 | ENSG00000104154 | 1,540 | 1,021 | ENSG00000104154 | distal | NA | NA | |
15 | 45,591,622 | A | G | false | tss_proximal | 686 | rs28442181 | 0.000061 | 0.027955 | 32.727 | intron_variant | intron_variant | ENSG00000104164 | 512 | ENSG00000104164 | 46 | 46 | ENSG00000104164 | tss_proximal | ENSG00000104164 | 3,796 | ENSG00000200419 | 361 | 361 | ENSG00000200419 | tss_proximal | tss_prox:b2 | tss_prox:b1 | |
15 | 45,676,237 | T | C | false | missense_variant | 624 | rs1044032 | 0.000014 | 0.19819 | 53.047 | missense_variant | missense_variant | ENSG00000137767 | 0 | ENSG00000273972 | 26,402 | 0 | ENSG00000137767 | missense_variant | ENSG00000137767 | 6,302 | ENSG00000273972 | 26,402 | 6,302 | ENSG00000137767 | missense_variant | NA | NA | |
15 | 46,408,513 | C | T | false | distal | 645 | rs2062308 | 0.000034 | 0.30268 | 154.66 | intergenic_variant | pELS | ENSG00000137767 | 717,231 | ENSG00000287704 | 1,784 | 1,784 | ENSG00000287704 | pELS | ENSG00000137767 | 725,972 | ENSG00000287704 | 1,784 | 1,784 | ENSG00000287704 | distal | NA | NA | |
15 | 46,866,618 | C | T | false | distal | 647 | rs6493240 | 0.000041 | 0.38971 | 295.19 | intergenic_variant | CA_flank | ENSG00000137872 | 317,482 | ENSG00000259509 | 38,659 | 38,659 | ENSG00000259509 | CA_flank | ENSG00000137872 | 317,482 | ENSG00000259509 | 39,091 | 39,091 | ENSG00000259509 | distal | NA | NA | |
15 | 47,603,642 | C | T | false | distal | 640 | rs2292372 | 0.000027 | 0.048829 | 127.09 | intron_variant | dELS_flank | ENSG00000137872 | 183 | ENSG00000259588 | 237 | 183 | ENSG00000137872 | dELS_flank | ENSG00000137872 | 113,355 | ENSG00000259588 | 2,709 | 2,709 | ENSG00000259588 | distal | NA | NA | |
15 | 47,749,453 | G | A | false | distal | 653 | rs142471725 | 0.000325 | 0.010035 | 20.49 | intron_variant | intron_variant | ENSG00000137872 | 10,269 | ENSG00000137872 | 10,291 | 10,269 | ENSG00000137872 | intron_variant | ENSG00000137872 | 10,269 | ENSG00000137872 | 16,368 | 10,269 | ENSG00000137872 | distal | NA | NA | |
15 | 47,759,455 | G | A | false | tss_proximal | 664 | rs16960030 | 0.00005 | 0.23682 | 138.14 | intron_variant | dELS_flank | ENSG00000137872 | 267 | ENSG00000137872 | 289 | 267 | ENSG00000137872 | tss_proximal | ENSG00000137872 | 267 | ENSG00000137872 | 6,366 | 267 | ENSG00000137872 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 47,817,195 | A | G | false | distal | 639 | rs12441047 | 0.000033 | 0.25818 | 95.161 | intron_variant | dELS_flank | ENSG00000137872 | 42,966 | ENSG00000259572 | 2,432 | 2,432 | ENSG00000259572 | dELS_flank | ENSG00000137872 | 50,614 | ENSG00000259754 | 4,345 | 4,345 | ENSG00000259754 | distal | NA | NA | |
15 | 48,207,778 | G | A | false | missense_variant | 618 | rs34661166 | 0.000075 | 0.00186 | 4.0883 | missense_variant | missense_variant | ENSG00000074803 | 0 | ENSG00000259385 | 6,093 | 0 | ENSG00000074803 | missense_variant | ENSG00000074803 | 57 | ENSG00000259385 | 6,093 | 57 | ENSG00000074803 | missense_variant | NA | NA | |
15 | 48,208,066 | G | A | true | missense_variant | 618 | rs34819316 | 0.9992 | Urea | 0.005457 | 5.6065 | missense_variant | missense_variant | ENSG00000074803 | 0 | ENSG00000259385 | 6,381 | 0 | ENSG00000074803 | missense_variant | ENSG00000074803 | 345 | ENSG00000259385 | 6,381 | 345 | ENSG00000074803 | missense_variant | NA | NA |
15 | 48,412,619 | G | A | false | missense_variant | 619 | rs61746008 | 0.000105 | 0.000861 | 2.5681 | missense_variant | missense_variant | ENSG00000166147 | 0 | ENSG00000166147 | 0 | 0 | ENSG00000166147 | missense_variant | ENSG00000128951 | 80,212 | ENSG00000166147 | 4,096 | 4,096 | ENSG00000166147 | missense_variant | NA | NA | |
15 | 48,492,542 | G | C | false | missense_variant | 627 | rs149681175 | 0.000037 | 0.001036 | 19.156 | missense_variant | missense_variant | ENSG00000166147 | 0 | ENSG00000166147 | 0 | 0 | ENSG00000166147 | missense_variant | ENSG00000166147 | 153,166 | ENSG00000166147 | 19,688 | 19,688 | ENSG00000166147 | missense_variant | NA | NA | |
15 | 48,616,151 | T | C | false | distal | 633 | rs76279245 | 0.00011 | 0.003319 | 64.329 | intron_variant | dELS_flank | ENSG00000166147 | 3,058 | ENSG00000166147 | 3,058 | 3,058 | ENSG00000166147 | dELS_flank | ENSG00000166147 | 29,557 | ENSG00000166147 | 28,680 | 28,680 | ENSG00000166147 | distal | NA | NA | |
15 | 48,616,960 | T | G | false | distal | 633 | rs79377596 | 0 | 0.000488 | 76.704 | intron_variant | dELS_flank | ENSG00000166147 | 3,867 | ENSG00000166147 | 3,867 | 3,867 | ENSG00000166147 | dELS_flank | ENSG00000166147 | 28,748 | ENSG00000166147 | 27,871 | 27,871 | ENSG00000166147 | distal | NA | NA | |
15 | 48,645,142 | G | A | false | tss_proximal | 663 | rs2070768 | 0.000505 | 0.30085 | 202.13 | intron_variant | pELS | ENSG00000166147 | 191 | ENSG00000166147 | 191 | 191 | ENSG00000166147 | tss_proximal | ENSG00000166147 | 566 | ENSG00000166147 | 309 | 309 | ENSG00000166147 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 48,957,282 | C | T | false | distal | 653 | rs568978366 | 0.000499 | 0.003419 | 12.804 | intron_variant | intron_variant | ENSG00000185634 | 5,148 | ENSG00000259602 | 9,250 | 5,148 | ENSG00000185634 | intron_variant | ENSG00000185634 | 6,636 | ENSG00000259500 | 14,520 | 6,636 | ENSG00000185634 | distal | NA | NA | |
15 | 49,005,852 | G | C | false | distal | 648 | rs182612505 | 0.000108 | 0.003755 | 25.964 | intron_variant | intron_variant | ENSG00000138593 | 3,363 | ENSG00000138593 | 3,910 | 3,363 | ENSG00000138593 | intron_variant | ENSG00000138593 | 9,362 | ENSG00000138593 | 3,910 | 3,910 | ENSG00000138593 | distal | NA | NA | |
15 | 49,047,021 | T | G | false | tss_proximal | 663 | rs16962017 | 0.000303 | 0.29725 | 418.83 | upstream_gene_variant | pELS | ENSG00000138593 | 573 | ENSG00000138593 | 574 | 573 | ENSG00000138593 | tss_proximal | ENSG00000138593 | 573 | ENSG00000138593 | 574 | 573 | ENSG00000138593 | tss_proximal | tss_prox:b1 | tss_prox:b1 | |
15 | 49,598,185 | T | C | false | distal | 653 | rs145371755 | 0.000033 | 0.002154 | 7.7915 | intron_variant | intron_variant | ENSG00000166262 | 8,177 | ENSG00000166262 | 7,970 | 7,970 | ENSG00000166262 | intron_variant | ENSG00000166262 | 8,241 | ENSG00000166262 | 16,985 | 8,241 | ENSG00000166262 | distal | NA | NA | |
15 | 49,598,897 | T | C | false | distal | 649 | rs11632201 | 0.007457 | 0.48308 | 361.52 | intron_variant | intron_variant | ENSG00000166262 | 8,889 | ENSG00000166262 | 7,258 | 7,258 | ENSG00000166262 | intron_variant | ENSG00000166262 | 8,953 | ENSG00000166262 | 16,273 | 8,953 | ENSG00000166262 | distal | NA | NA | |
15 | 49,860,397 | T | C | false | missense_variant | 627 | rs114457386 | 0.000077 | 0.000821 | 10.785 | missense_variant | missense_variant | ENSG00000104043 | 0 | ENSG00000104043 | 0 | 0 | ENSG00000104043 | missense_variant | ENSG00000104043 | 184,276 | ENSG00000104043 | 16,208 | 16,208 | ENSG00000104043 | missense_variant | NA | NA | |
15 | 49,918,736 | T | A | false | distal | 640 | rs12441816 | 0.000392 | 0.040321 | 70.969 | intron_variant | dELS_flank | ENSG00000104043 | 102 | ENSG00000104043 | 102 | 102 | ENSG00000104043 | dELS_flank | ENSG00000104043 | 125,937 | ENSG00000104043 | 1,459 | 1,459 | ENSG00000104043 | distal | NA | NA | |
15 | 50,116,797 | T | A | false | distal | 635 | rs75800597 | 0.00011 | 0.14122 | 118.95 | intron_variant | dELS_flank | ENSG00000104043 | 2,292 | ENSG00000104043 | 2,325 | 2,292 | ENSG00000104043 | dELS_flank | ENSG00000104043 | 2,292 | ENSG00000104043 | 2,420 | 2,292 | ENSG00000104043 | distal | NA | NA |
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