README.md

---
pretty_name: Observed Antibody Dataset
license: cc-by-4.0
configs:
  - config_name: default
    features:
      # Metadata fields
      - name: meta_Run
        dtype: string
      - name: meta_Link
        dtype: string
      - name: meta_Author
        dtype: string
      - name: meta_Species
        dtype: string
      - name: meta_Age
        dtype: string
      - name: meta_BSource
        dtype: string
      - name: meta_BType
        dtype: string
      - name: meta_Vaccine
        dtype: string
      - name: meta_Disease
        dtype: string
      - name: meta_Subject
        dtype: string
      - name: meta_Longitudinal
        dtype: string
      - name: meta_Unique sequences
        dtype: int64
      - name: meta_Isotype
        dtype: string
      - name: meta_Chain
        dtype: string
      - name: source_file
        dtype: string
      
      # Heavy chain fields
      - name: sequence_id_heavy
        dtype: string
      - name: sequence_heavy
        dtype: string
      - name: locus_heavy
        dtype: string
      - name: stop_codon_heavy
        dtype: string
      - name: vj_in_frame_heavy
        dtype: string
      - name: v_frameshift_heavy
        dtype: string
      - name: productive_heavy
        dtype: string
      - name: rev_comp_heavy
        dtype: string
      - name: complete_vdj_heavy
        dtype: string
      - name: v_call_heavy
        dtype: string
      - name: d_call_heavy
        dtype: string
      - name: j_call_heavy
        dtype: string
      - name: sequence_alignment_heavy
        dtype: string
      - name: germline_alignment_heavy
        dtype: string
      - name: sequence_alignment_aa_heavy
        dtype: string
      - name: germline_alignment_aa_heavy
        dtype: string
      - name: v_alignment_start_heavy
        dtype: string
      - name: v_alignment_end_heavy
        dtype: string
      - name: d_alignment_start_heavy
        dtype: string
      - name: d_alignment_end_heavy
        dtype: string
      - name: j_alignment_start_heavy
        dtype: string
      - name: j_alignment_end_heavy
        dtype: string
      - name: v_sequence_alignment_heavy
        dtype: string
      - name: v_sequence_alignment_aa_heavy
        dtype: string
      - name: v_germline_alignment_heavy
        dtype: string
      - name: v_germline_alignment_aa_heavy
        dtype: string
      - name: d_sequence_alignment_heavy
        dtype: string
      - name: d_sequence_alignment_aa_heavy
        dtype: string
      - name: d_germline_alignment_heavy
        dtype: string
      - name: d_germline_alignment_aa_heavy
        dtype: string
      - name: j_sequence_alignment_heavy
        dtype: string
      - name: j_sequence_alignment_aa_heavy
        dtype: string
      - name: j_germline_alignment_heavy
        dtype: string
      - name: j_germline_alignment_aa_heavy
        dtype: string
      - name: fwr1_heavy
        dtype: string
      - name: fwr1_aa_heavy
        dtype: string
      - name: cdr1_heavy
        dtype: string
      - name: cdr1_aa_heavy
        dtype: string
      - name: fwr2_heavy
        dtype: string
      - name: fwr2_aa_heavy
        dtype: string
      - name: cdr2_heavy
        dtype: string
      - name: cdr2_aa_heavy
        dtype: string
      - name: fwr3_heavy
        dtype: string
      - name: fwr3_aa_heavy
        dtype: string
      - name: fwr4_heavy
        dtype: string
      - name: fwr4_aa_heavy
        dtype: string
      - name: cdr3_heavy
        dtype: string
      - name: cdr3_aa_heavy
        dtype: string
      - name: junction_heavy
        dtype: string
      - name: junction_length_heavy
        dtype: string
      - name: junction_aa_heavy
        dtype: string
      - name: junction_aa_length_heavy
        dtype: string
      - name: v_score_heavy
        dtype: string
      - name: d_score_heavy
        dtype: string
      - name: j_score_heavy
        dtype: string
      - name: v_cigar_heavy
        dtype: string
      - name: d_cigar_heavy
        dtype: string
      - name: j_cigar_heavy
        dtype: string
      - name: v_support_heavy
        dtype: string
      - name: d_support_heavy
        dtype: string
      - name: j_support_heavy
        dtype: string
      - name: v_identity_heavy
        dtype: string
      - name: d_identity_heavy
        dtype: string
      - name: j_identity_heavy
        dtype: string
      - name: v_sequence_start_heavy
        dtype: string
      - name: v_sequence_end_heavy
        dtype: string
      - name: v_germline_start_heavy
        dtype: string
      - name: v_germline_end_heavy
        dtype: string
      - name: d_sequence_start_heavy
        dtype: string
      - name: d_sequence_end_heavy
        dtype: string
      - name: d_germline_start_heavy
        dtype: string
      - name: d_germline_end_heavy
        dtype: string
      - name: j_sequence_start_heavy
        dtype: string
      - name: j_sequence_end_heavy
        dtype: string
      - name: j_germline_start_heavy
        dtype: string
      - name: j_germline_end_heavy
        dtype: string
      - name: fwr1_start_heavy
        dtype: string
      - name: fwr1_end_heavy
        dtype: string
      - name: cdr1_start_heavy
        dtype: string
      - name: cdr1_end_heavy
        dtype: string
      - name: fwr2_start_heavy
        dtype: string
      - name: fwr2_end_heavy
        dtype: string
      - name: cdr2_start_heavy
        dtype: string
      - name: cdr2_end_heavy
        dtype: string
      - name: fwr3_start_heavy
        dtype: string
      - name: fwr3_end_heavy
        dtype: string
      - name: fwr4_start_heavy
        dtype: string
      - name: fwr4_end_heavy
        dtype: string
      - name: cdr3_start_heavy
        dtype: string
      - name: cdr3_end_heavy
        dtype: string
      - name: np1_heavy
        dtype: string
      - name: np1_length_heavy
        dtype: string
      - name: np2_heavy
        dtype: string
      - name: np2_length_heavy
        dtype: string
      - name: c_region_heavy
        dtype: string
      - name: Isotype_heavy
        dtype: string
      - name: Redundancy_heavy
        dtype: string
      - name: ANARCI_numbering_heavy
        dtype: string
      - name: ANARCI_status_heavy
        dtype: string
      
      # Light chain fields
      - name: sequence_id_light
        dtype: string
      - name: sequence_light
        dtype: string
      - name: locus_light
        dtype: string
      - name: stop_codon_light
        dtype: string
      - name: vj_in_frame_light
        dtype: string
      - name: v_frameshift_light
        dtype: string
      - name: productive_light
        dtype: string
      - name: rev_comp_light
        dtype: string
      - name: complete_vdj_light
        dtype: string
      - name: v_call_light
        dtype: string
      - name: d_call_light
        dtype: string
      - name: j_call_light
        dtype: string
      - name: sequence_alignment_light
        dtype: string
      - name: germline_alignment_light
        dtype: string
      - name: sequence_alignment_aa_light
        dtype: string
      - name: germline_alignment_aa_light
        dtype: string
      - name: v_alignment_start_light
        dtype: string
      - name: v_alignment_end_light
        dtype: string
      - name: d_alignment_start_light
        dtype: string
      - name: d_alignment_end_light
        dtype: string
      - name: j_alignment_start_light
        dtype: string
      - name: j_alignment_end_light
        dtype: string
      - name: v_sequence_alignment_light
        dtype: string
      - name: v_sequence_alignment_aa_light
        dtype: string
      - name: v_germline_alignment_light
        dtype: string
      - name: v_germline_alignment_aa_light
        dtype: string
      - name: d_sequence_alignment_light
        dtype: string
      - name: d_sequence_alignment_aa_light
        dtype: string
      - name: d_germline_alignment_light
        dtype: string
      - name: d_germline_alignment_aa_light
        dtype: string
      - name: j_sequence_alignment_light
        dtype: string
      - name: j_sequence_alignment_aa_light
        dtype: string
      - name: j_germline_alignment_light
        dtype: string
      - name: j_germline_alignment_aa_light
        dtype: string
      - name: fwr1_light
        dtype: string
      - name: fwr1_aa_light
        dtype: string
      - name: cdr1_light
        dtype: string
      - name: cdr1_aa_light
        dtype: string
      - name: fwr2_light
        dtype: string
      - name: fwr2_aa_light
        dtype: string
      - name: cdr2_light
        dtype: string
      - name: cdr2_aa_light
        dtype: string
      - name: fwr3_light
        dtype: string
      - name: fwr3_aa_light
        dtype: string
      - name: fwr4_light
        dtype: string
      - name: fwr4_aa_light
        dtype: string
      - name: cdr3_light
        dtype: string
      - name: cdr3_aa_light
        dtype: string
      - name: junction_light
        dtype: string
      - name: junction_length_light
        dtype: string
      - name: junction_aa_light
        dtype: string
      - name: junction_aa_length_light
        dtype: string
      - name: v_score_light
        dtype: string
      - name: d_score_light
        dtype: string
      - name: j_score_light
        dtype: string
      - name: v_cigar_light
        dtype: string
      - name: d_cigar_light
        dtype: string
      - name: j_cigar_light
        dtype: string
      - name: v_support_light
        dtype: string
      - name: d_support_light
        dtype: string
      - name: j_support_light
        dtype: string
      - name: v_identity_light
        dtype: string
      - name: d_identity_light
        dtype: string
      - name: j_identity_light
        dtype: string
      - name: v_sequence_start_light
        dtype: string
      - name: v_sequence_end_light
        dtype: string
      - name: v_germline_start_light
        dtype: string
      - name: v_germline_end_light
        dtype: string
      - name: d_sequence_start_light
        dtype: string
      - name: d_sequence_end_light
        dtype: string
      - name: d_germline_start_light
        dtype: string
      - name: d_germline_end_light
        dtype: string
      - name: j_sequence_start_light
        dtype: string
      - name: j_sequence_end_light
        dtype: string
      - name: j_germline_start_light
        dtype: string
      - name: j_germline_end_light
        dtype: string
      - name: fwr1_start_light
        dtype: string
      - name: fwr1_end_light
        dtype: string
      - name: cdr1_start_light
        dtype: string
      - name: cdr1_end_light
        dtype: string
      - name: fwr2_start_light
        dtype: string
      - name: fwr2_end_light
        dtype: string
      - name: cdr2_start_light
        dtype: string
      - name: cdr2_end_light
        dtype: string
      - name: fwr3_start_light
        dtype: string
      - name: fwr3_end_light
        dtype: string
      - name: fwr4_start_light
        dtype: string
      - name: fwr4_end_light
        dtype: string
      - name: cdr3_start_light
        dtype: string
      - name: cdr3_end_light
        dtype: string
      - name: np1_light
        dtype: string
      - name: np1_length_light
        dtype: string
      - name: np2_light
        dtype: string
      - name: np2_length_light
        dtype: string
      - name: c_region_light
        dtype: string
      - name: Isotype_light
        dtype: string
      - name: Redundancy_light
        dtype: string
      - name: ANARCI_numbering_light
        dtype: string
      - name: ANARCI_status_light
        dtype: string
    data_files: paired/*.csv
  - config_name: paired
    features:
      # Metadata fields
      - name: meta_Run
        dtype: string
      - name: meta_Link
        dtype: string
      - name: meta_Author
        dtype: string
      - name: meta_Species
        dtype: string
      - name: meta_Age
        dtype: string
      - name: meta_BSource
        dtype: string
      - name: meta_BType
        dtype: string
      - name: meta_Vaccine
        dtype: string
      - name: meta_Disease
        dtype: string
      - name: meta_Subject
        dtype: string
      - name: meta_Longitudinal
        dtype: string
      - name: meta_Unique sequences
        dtype: int64
      - name: meta_Isotype
        dtype: string
      - name: meta_Chain
        dtype: string
      - name: source_file
        dtype: string
      
      # Heavy chain fields
      - name: sequence_id_heavy
        dtype: string
      - name: sequence_heavy
        dtype: string
      - name: locus_heavy
        dtype: string
      - name: stop_codon_heavy
        dtype: string
      - name: vj_in_frame_heavy
        dtype: string
      - name: v_frameshift_heavy
        dtype: string
      - name: productive_heavy
        dtype: string
      - name: rev_comp_heavy
        dtype: string
      - name: complete_vdj_heavy
        dtype: string
      - name: v_call_heavy
        dtype: string
      - name: d_call_heavy
        dtype: string
      - name: j_call_heavy
        dtype: string
      - name: sequence_alignment_heavy
        dtype: string
      - name: germline_alignment_heavy
        dtype: string
      - name: sequence_alignment_aa_heavy
        dtype: string
      - name: germline_alignment_aa_heavy
        dtype: string
      - name: v_alignment_start_heavy
        dtype: string
      - name: v_alignment_end_heavy
        dtype: string
      - name: d_alignment_start_heavy
        dtype: string
      - name: d_alignment_end_heavy
        dtype: string
      - name: j_alignment_start_heavy
        dtype: string
      - name: j_alignment_end_heavy
        dtype: string
      - name: v_sequence_alignment_heavy
        dtype: string
      - name: v_sequence_alignment_aa_heavy
        dtype: string
      - name: v_germline_alignment_heavy
        dtype: string
      - name: v_germline_alignment_aa_heavy
        dtype: string
      - name: d_sequence_alignment_heavy
        dtype: string
      - name: d_sequence_alignment_aa_heavy
        dtype: string
      - name: d_germline_alignment_heavy
        dtype: string
      - name: d_germline_alignment_aa_heavy
        dtype: string
      - name: j_sequence_alignment_heavy
        dtype: string
      - name: j_sequence_alignment_aa_heavy
        dtype: string
      - name: j_germline_alignment_heavy
        dtype: string
      - name: j_germline_alignment_aa_heavy
        dtype: string
      - name: fwr1_heavy
        dtype: string
      - name: fwr1_aa_heavy
        dtype: string
      - name: cdr1_heavy
        dtype: string
      - name: cdr1_aa_heavy
        dtype: string
      - name: fwr2_heavy
        dtype: string
      - name: fwr2_aa_heavy
        dtype: string
      - name: cdr2_heavy
        dtype: string
      - name: cdr2_aa_heavy
        dtype: string
      - name: fwr3_heavy
        dtype: string
      - name: fwr3_aa_heavy
        dtype: string
      - name: fwr4_heavy
        dtype: string
      - name: fwr4_aa_heavy
        dtype: string
      - name: cdr3_heavy
        dtype: string
      - name: cdr3_aa_heavy
        dtype: string
      - name: junction_heavy
        dtype: string
      - name: junction_length_heavy
        dtype: string
      - name: junction_aa_heavy
        dtype: string
      - name: junction_aa_length_heavy
        dtype: string
      - name: v_score_heavy
        dtype: string
      - name: d_score_heavy
        dtype: string
      - name: j_score_heavy
        dtype: string
      - name: v_cigar_heavy
        dtype: string
      - name: d_cigar_heavy
        dtype: string
      - name: j_cigar_heavy
        dtype: string
      - name: v_support_heavy
        dtype: string
      - name: d_support_heavy
        dtype: string
      - name: j_support_heavy
        dtype: string
      - name: v_identity_heavy
        dtype: string
      - name: d_identity_heavy
        dtype: string
      - name: j_identity_heavy
        dtype: string
      - name: v_sequence_start_heavy
        dtype: string
      - name: v_sequence_end_heavy
        dtype: string
      - name: v_germline_start_heavy
        dtype: string
      - name: v_germline_end_heavy
        dtype: string
      - name: d_sequence_start_heavy
        dtype: string
      - name: d_sequence_end_heavy
        dtype: string
      - name: d_germline_start_heavy
        dtype: string
      - name: d_germline_end_heavy
        dtype: string
      - name: j_sequence_start_heavy
        dtype: string
      - name: j_sequence_end_heavy
        dtype: string
      - name: j_germline_start_heavy
        dtype: string
      - name: j_germline_end_heavy
        dtype: string
      - name: fwr1_start_heavy
        dtype: string
      - name: fwr1_end_heavy
        dtype: string
      - name: cdr1_start_heavy
        dtype: string
      - name: cdr1_end_heavy
        dtype: string
      - name: fwr2_start_heavy
        dtype: string
      - name: fwr2_end_heavy
        dtype: string
      - name: cdr2_start_heavy
        dtype: string
      - name: cdr2_end_heavy
        dtype: string
      - name: fwr3_start_heavy
        dtype: string
      - name: fwr3_end_heavy
        dtype: string
      - name: fwr4_start_heavy
        dtype: string
      - name: fwr4_end_heavy
        dtype: string
      - name: cdr3_start_heavy
        dtype: string
      - name: cdr3_end_heavy
        dtype: string
      - name: np1_heavy
        dtype: string
      - name: np1_length_heavy
        dtype: string
      - name: np2_heavy
        dtype: string
      - name: np2_length_heavy
        dtype: string
      - name: c_region_heavy
        dtype: string
      - name: Isotype_heavy
        dtype: string
      - name: Redundancy_heavy
        dtype: string
      - name: ANARCI_numbering_heavy
        dtype: string
      - name: ANARCI_status_heavy
        dtype: string
      
      # Light chain fields
      - name: sequence_id_light
        dtype: string
      - name: sequence_light
        dtype: string
      - name: locus_light
        dtype: string
      - name: stop_codon_light
        dtype: string
      - name: vj_in_frame_light
        dtype: string
      - name: v_frameshift_light
        dtype: string
      - name: productive_light
        dtype: string
      - name: rev_comp_light
        dtype: string
      - name: complete_vdj_light
        dtype: string
      - name: v_call_light
        dtype: string
      - name: d_call_light
        dtype: string
      - name: j_call_light
        dtype: string
      - name: sequence_alignment_light
        dtype: string
      - name: germline_alignment_light
        dtype: string
      - name: sequence_alignment_aa_light
        dtype: string
      - name: germline_alignment_aa_light
        dtype: string
      - name: v_alignment_start_light
        dtype: string
      - name: v_alignment_end_light
        dtype: string
      - name: d_alignment_start_light
        dtype: string
      - name: d_alignment_end_light
        dtype: string
      - name: j_alignment_start_light
        dtype: string
      - name: j_alignment_end_light
        dtype: string
      - name: v_sequence_alignment_light
        dtype: string
      - name: v_sequence_alignment_aa_light
        dtype: string
      - name: v_germline_alignment_light
        dtype: string
      - name: v_germline_alignment_aa_light
        dtype: string
      - name: d_sequence_alignment_light
        dtype: string
      - name: d_sequence_alignment_aa_light
        dtype: string
      - name: d_germline_alignment_light
        dtype: string
      - name: d_germline_alignment_aa_light
        dtype: string
      - name: j_sequence_alignment_light
        dtype: string
      - name: j_sequence_alignment_aa_light
        dtype: string
      - name: j_germline_alignment_light
        dtype: string
      - name: j_germline_alignment_aa_light
        dtype: string
      - name: fwr1_light
        dtype: string
      - name: fwr1_aa_light
        dtype: string
      - name: cdr1_light
        dtype: string
      - name: cdr1_aa_light
        dtype: string
      - name: fwr2_light
        dtype: string
      - name: fwr2_aa_light
        dtype: string
      - name: cdr2_light
        dtype: string
      - name: cdr2_aa_light
        dtype: string
      - name: fwr3_light
        dtype: string
      - name: fwr3_aa_light
        dtype: string
      - name: fwr4_light
        dtype: string
      - name: fwr4_aa_light
        dtype: string
      - name: cdr3_light
        dtype: string
      - name: cdr3_aa_light
        dtype: string
      - name: junction_light
        dtype: string
      - name: junction_length_light
        dtype: string
      - name: junction_aa_light
        dtype: string
      - name: junction_aa_length_light
        dtype: string
      - name: v_score_light
        dtype: string
      - name: d_score_light
        dtype: string
      - name: j_score_light
        dtype: string
      - name: v_cigar_light
        dtype: string
      - name: d_cigar_light
        dtype: string
      - name: j_cigar_light
        dtype: string
      - name: v_support_light
        dtype: string
      - name: d_support_light
        dtype: string
      - name: j_support_light
        dtype: string
      - name: v_identity_light
        dtype: string
      - name: d_identity_light
        dtype: string
      - name: j_identity_light
        dtype: string
      - name: v_sequence_start_light
        dtype: string
      - name: v_sequence_end_light
        dtype: string
      - name: v_germline_start_light
        dtype: string
      - name: v_germline_end_light
        dtype: string
      - name: d_sequence_start_light
        dtype: string
      - name: d_sequence_end_light
        dtype: string
      - name: d_germline_start_light
        dtype: string
      - name: d_germline_end_light
        dtype: string
      - name: j_sequence_start_light
        dtype: string
      - name: j_sequence_end_light
        dtype: string
      - name: j_germline_start_light
        dtype: string
      - name: j_germline_end_light
        dtype: string
      - name: fwr1_start_light
        dtype: string
      - name: fwr1_end_light
        dtype: string
      - name: cdr1_start_light
        dtype: string
      - name: cdr1_end_light
        dtype: string
      - name: fwr2_start_light
        dtype: string
      - name: fwr2_end_light
        dtype: string
      - name: cdr2_start_light
        dtype: string
      - name: cdr2_end_light
        dtype: string
      - name: fwr3_start_light
        dtype: string
      - name: fwr3_end_light
        dtype: string
      - name: fwr4_start_light
        dtype: string
      - name: fwr4_end_light
        dtype: string
      - name: cdr3_start_light
        dtype: string
      - name: cdr3_end_light
        dtype: string
      - name: np1_light
        dtype: string
      - name: np1_length_light
        dtype: string
      - name: np2_light
        dtype: string
      - name: np2_length_light
        dtype: string
      - name: c_region_light
        dtype: string
      - name: Isotype_light
        dtype: string
      - name: Redundancy_light
        dtype: string
      - name: ANARCI_numbering_light
        dtype: string
      - name: ANARCI_status_light
        dtype: string
    data_files: paired/*.csv
---

# OPIG Observed Antibody Dataset (OAS)

## Filtering

If you know you only want a subset of this dataset, you can load a filtered subset like this:
`ds = load_dataset('OPIG/OAS', streaming=streaming, filters=[("meta_Species", "==", "human")]`.