repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
jbpease/dfoil | dfoil.py | 1 | 31705 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
DFOIL: Directional introgression testing a five-taxon phylogeny
dfoil - Calculate DFOIL and D-statistics stats from one or more count files.
James B. Pease
http://www.github.com/jbpease/dfoil
USAGE: dfoil.py INPUTFILE1 ... --out OUTPUTFILE1 ...
"""
from __future__ imp... | gpl-3.0 |
bdilday/nflMarkov | nflMarkov.py | 1 | 59379 | #!/usr/bin/env python
import os, sys
import re
import pickle
import numpy as np
import copy
from scipy import interpolate
import scipy.sparse
from matplotlib.backends.backend_pdf import PdfPages
from matplotlib import pyplot as plt
import matplotlib
from matplotlib import pyplot as plt
############################
cl... | bsd-2-clause |
Paul-St-Young/solid_hydrogen | chiesa_correction.py | 1 | 34160 | import numpy as np
from itertools import product
# =========================== get long-range U(k) ===========================
def isotropic_jk2(jk2_dat, **kwargs):
""" extract ee long-range Jastrow from Jk2.dat
Jk2.dat should have kx,ky,kz, coeff_real columns
This function currently assumes an extra coeff_i... | mit |
kecnry/autofig | autofig/axes.py | 1 | 73859 | import numpy as np
import astropy.units as u
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
from matplotlib.collections import LineCollection
from matplotlib import colorbar as mplcolorbar
from matplotlib import gridspec as gridspec
from matplotlib import __version__ as _mplversion
from distu... | gpl-3.0 |
tanghaibao/jcvi | jcvi/variation/cnv.py | 1 | 35517 | #!/usr/bin/env python
# -*- coding: UTF-8 -*-
"""
Helper functions for Copy Number Variations (CNV).
"""
import sys
import logging
import os.path as op
import numpy as np
import numpy.ma as ma
import pandas as pd
import pysam
from collections import Counter, defaultdict
from itertools import groupby
from multiproces... | bsd-2-clause |
ocefpaf/cartopy | lib/cartopy/mpl/geoaxes.py | 1 | 81785 | # (C) British Crown Copyright 2011 - 2020, Met Office
#
# This file is part of cartopy.
#
# cartopy is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option)... | lgpl-3.0 |
lvphj/epydemiology | epydemiology/phjRROR.py | 1 | 36528 | import pkg_resources
try:
pkg_resources.get_distribution('numpy')
except pkg_resources.DistributionNotFound:
numpyPresent = False
print("Error: Numpy package not available.")
else:
numpyPresent = True
import numpy as np
try:
pkg_resources.get_distribution('pandas')
except pkg_resources.Distri... | mit |
hughdbrown/QSTK-nohist | src/qstkutil/DataAccess.py | 1 | 36984 | '''
(c) 2011, 2012 Georgia Tech Research Corporation
This source code is released under the New BSD license. Please see
http://wiki.quantsoftware.org/index.php?title=QSTK_License
for license details.
Created on Jan 1, 2011
@author: Shreyas Joshi
@contact: shreyasj@gatech.edu
@summary: Contains tutorial for backteste... | bsd-3-clause |
Kate-Willett/Climate_Explorer | PYTHON/MakeTimeSpaceAveragePlotSave_Jul2018.py | 1 | 73033 | #!/usr/local/sci/bin/python
# PYTHON3
# Python3
# Author: Kate Willett
# Created: 26 July 2018
# Last update: 2 Aug 2018
# Location: /data/local/hadkw/HADCRUH2/UPDATE2017/PROGS/PYTHON/ # this will probably change
# GitHub: https://github.com/Kate-Willett/Climate_Explorer/tree/master/PYTHON/
# -----------------------
# ... | cc0-1.0 |
Erotemic/vtool | vtool_ibeis/score_normalization.py | 1 | 68734 | # -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals
import numpy as np
import utool as ut
import ubelt as ub
import scipy.interpolate
from functools import partial
def check_unused_kwargs(kwargs, expected_keys):
unused_keys = set(kwargs.keys()) - set(expected... | apache-2.0 |
SCECcode/BBP | bbp/comps/anderson_gof.py | 1 | 46073 | #!/usr/bin/env python
"""
Copyright 2010-2018 University Of Southern California
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by appli... | apache-2.0 |
hvasbath/beat | beat/models/geodetic.py | 1 | 34186 | from logging import getLogger
import os
import copy
from time import time
from collections import OrderedDict
import numpy as num
from theano.printing import Print
from theano import shared
from theano import config as tconfig
import theano.tensor as tt
from pyrocko.gf import LocalEngine, RectangularSource
from bea... | gpl-3.0 |
nicproulx/mne-python | mne/io/base.py | 2 | 103296 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Teon Brooks <teon.brooks@gmail.com>
# Marijn van Vliet <w.m.vanvli... | bsd-3-clause |
nontas/menpowidgets | menpowidgets/utils.py | 1 | 41754 | from struct import pack as struct_pack
import binascii
import numpy as np
import matplotlib.pyplot as plt
from menpo.compatibility import unicode
from menpo.feature import glyph, sum_channels
def verify_ipython_and_kernel():
r"""
Verify that the current environment is a valid IPython environment that
con... | bsd-3-clause |
embray/numpy | numpy/lib/function_base.py | 1 | 118097 | from __future__ import division, absolute_import, print_function
__docformat__ = "restructuredtext en"
__all__ = [
'select', 'piecewise', 'trim_zeros', 'copy', 'iterable', 'percentile',
'diff', 'gradient', 'angle', 'unwrap', 'sort_complex', 'disp',
'extract', 'place', 'vectorize', 'asarray_chkfinite', 'ave... | bsd-3-clause |
andyxhadji/incubator-airflow | airflow/contrib/hooks/bigquery_hook.py | 1 | 70070 | # -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
#... | apache-2.0 |
matthewghgriffiths/nestedbasinsampling | nestedbasinsampling/graphs/basinGraph2.py | 1 | 32711 | # -*- coding: utf-8 -*-
from collections import defaultdict, namedtuple
from itertools import chain, izip, groupby
from functools import total_ordering
from math import exp, log, sqrt
import numpy as np
from scipy.special import polygamma, betaln, gammaln
from scipy.stats import chi2
import networkx as nx
import mat... | gpl-3.0 |
jlyons871/Tax-Calculator | taxcalc/records.py | 1 | 35205 | """
This file reads input csv file and saves the variables
"""
import math
import copy
import pandas as pd
import numpy as np
import os.path
import os
from numba import vectorize, float64
from pkg_resources import resource_stream, Requirement
class Records(object):
"""
This class represents the data for a col... | mit |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/mpl_toolkits/axes_grid1/axes_grid.py | 1 | 30174 | import matplotlib.cbook as cbook
import matplotlib.pyplot as plt
import matplotlib.axes as maxes
#import matplotlib.colorbar as mcolorbar
from . import colorbar as mcolorbar
import matplotlib as mpl
import matplotlib.patches as mpatches
import matplotlib.lines as mlines
import matplotlib.ticker as ticker
from matplot... | gpl-3.0 |
paris-saclay-cds/ramp-workflow | rampwf/externals/tabulate.py | 1 | 56027 | # -*- coding: utf-8 -*-
"""Pretty-print tabular data."""
from __future__ import print_function
from __future__ import unicode_literals
from collections import namedtuple
from platform import python_version_tuple
import re
import math
if python_version_tuple() >= ("3", "3", "0"):
from collections.abc import Iter... | bsd-3-clause |
BhallaLab/moose | moose-examples/paper-2015/Fig6_NetMultiscale/ReducedModel.py | 1 | 36806 | #/**********************************************************************
#** This program is part of 'MOOSE', the
#** Messaging Object Oriented Simulation Environment.
#** Copyright (C) 2003-2014 Upinder S. Bhalla. and NCBS
#** It is made available under the terms of the
#** GNU Lesser General Public License ... | gpl-3.0 |
yandex/yandex-tank | yandextank/plugins/Console/screen.py | 1 | 40737 | # -*- coding: utf-8 -*-
''' Classes to build full console screen '''
import fcntl
import logging
import os
import struct
import termios
import time
import bisect
from collections import defaultdict
import pandas as pd
from ...common import util
def get_terminal_size():
'''
Gets width and height of terminal v... | lgpl-2.1 |
pratapvardhan/pandas | pandas/tests/dtypes/test_inference.py | 1 | 42609 | # -*- coding: utf-8 -*-
"""
These the test the public routines exposed in types/common.py
related to inference and not otherwise tested in types/test_common.py
"""
from warnings import catch_warnings
import collections
import re
from datetime import datetime, date, timedelta, time
from decimal import Decimal
import n... | bsd-3-clause |
geomagpy/magpy | magpy/gui/magpy_gui.py | 1 | 348514 | #!/usr/bin/env python
from __future__ import print_function
import wx
from matplotlib.backends.backend_wxagg import FigureCanvasWxAgg as FigureCanvas
from matplotlib.backends.backend_wx import NavigationToolbar2Wx
from matplotlib.figure import Figure
try:
from pypubsub import setupkwargs
except:
try: # Neces... | bsd-3-clause |
alanhdu/colored | colored/data.py | 1 | 44326 | from __future__ import division
import numpy as np
_bwr_data = [
(0, (0.0, 0.0, 1.0)),
(1/2, (1.0, 1.0, 1.0)),
(1, (1.0, 0.0, 0.0))
]
_brg_data = [
(0, (0.0, 0.0, 1.0)),
(1/2, (1.0, 0.0, 0.0)),
(1, (0.0, 1.0, 0.0))
]
_seismic_data = [
(0, (0.0, 0.0, 0.3)),
(1/4, (0.0, 0.0, 1.0)),
... | mit |
jgao54/airflow | airflow/hooks/hive_hooks.py | 1 | 36659 | # -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
#... | apache-2.0 |
aeklant/scipy | scipy/stats/_discrete_distns.py | 2 | 30559 | #
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from scipy import special
from scipy.special import entr, logsumexp, betaln, gammaln as gamln
from scipy._lib._util import _lazywhere
from numpy import floor, ceil, log, exp, sqrt, log1p, expm1, tanh, cosh, sinh
im... | bsd-3-clause |
JoshDaly/scriptShed | parse_hit_data.trackm.py | 1 | 47544 | #!/usr/bin/env python
###############################################################################
#
# __parse_hit_data.trackm__.py - description!
#
###############################################################################
# #
# This program is free software: you can redistribute it and/or modify #
# it under ... | gpl-2.0 |
zohannn/motion_manager | scripts/old/controlling/predicting_picking_for_control.py | 1 | 297910 | #!/usr/bin/env python3
import sys
import pandas as pd
from sklearn import decomposition
from sklearn import metrics
from sklearn.externals import joblib
import matplotlib.pyplot as plt
import tensorflow as tf
import numpy as np
import math
from random import randint
# HUPL
from HUPL.learner import preprocess_featur... | mit |
mwojnars/nifty | math.py | 1 | 50895 | '''
Statistical and mathematical routines. Built on top of 'numpy'.
---
This file is part of Nifty python package. Copyright (c) by Marcin Wojnarski.
Nifty is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either... | gpl-3.0 |
mdshw5/fastqp | fastqp/plots.py | 1 | 33367 | from __future__ import division
import sys
import numpy as np
import math
import matplotlib as mpl
if sys.platform is not 'darwin':
mpl.use('Agg')
import matplotlib.pyplot as plt
import matplotlib.mlab as mlab
import scipy.stats
from matplotlib.colors import LinearSegmentedColormap
from cycler import cycler
from s... | mit |
lahwran/dotfiles | packages/at/at/__init__.py | 1 | 40656 | #!/usr/bin/env python
# python 2 only, adjust path (or port, I'd love you) as needed
# run @ --help for (a little) more information
# MIT licensed.
"""\
primarily a python eval command. auto-formats the result of your expression:
(> indicates the line contains user input)
> $ @ '1'
1
> $ @ '1 + 1'
2
> $ ... | mit |
ranaroussi/qtpylib | qtpylib/tools.py | 1 | 31862 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# QTPyLib: Quantitative Trading Python Library
# https://github.com/ranaroussi/qtpylib
#
# Copyright 2016-2018 Ran Aroussi
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obta... | apache-2.0 |
fboers/jumeg | jumeg/jumeg_volume_plotting.py | 1 | 38705 | from os import path as op
import numpy as np
from matplotlib import pyplot as plt
import time as time2
from time import strftime, localtime
from nibabel.affines import apply_affine
from nilearn import plotting
from nilearn.image import index_img
from nilearn.plotting.img_plotting import _MNI152Template
MNI152TEMPLAT... | bsd-3-clause |
nicocardiel/pyemir | emirdrp/tools/fit_boundaries.py | 1 | 62802 | #
# Copyright 2008-2018 Universidad Complutense de Madrid
#
# This file is part of PyEmir
#
# PyEmir is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | gpl-3.0 |
UCBerkeleySETI/breakthrough | ML/CNNFRB/research_code/train.py | 1 | 31334 | from __future__ import print_function
import tensorflow as tf
from resnet import RESNET, UPDATE_OPS_COLLECTION, RESNET_VARIABLES, MOVING_AVERAGE_DECAY
from image_reader import Reader, get_corpus_size, load_data_to_memory
from filterbank_reader import FReader
import math, numpy as np
import os, sys, io
import time
impor... | gpl-3.0 |
plotly/python-api | packages/python/plotly/plotly/graph_objs/scatter3d/line/_colorbar.py | 1 | 69628 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class ColorBar(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "scatter3d.line"
_path_str = "scatter3d.line.colorbar"
_valid_props = {
"bgcolor",
... | mit |
allisony/pyspeckit | pyspeckit/spectrum/fitters.py | 1 | 91957 | from __future__ import print_function
import matplotlib
import numpy as np
import copy
import re
import warnings
from astropy import log
from astropy import units as u
from astropy.extern.six.moves import xrange
from astropy.extern.six import string_types
from ..config import mycfg
from ..config import ConfigDescript... | mit |
imperial-genomics-facility/data-management-python | igf_data/igfdb/collectionadaptor.py | 1 | 34799 | import os
import pandas as pd
from igf_data.utils.fileutils import calculate_file_checksum
from igf_data.igfdb.baseadaptor import BaseAdaptor
from igf_data.igfdb.fileadaptor import FileAdaptor
from igf_data.igfdb.igfTables import Collection, File, Collection_group, Collection_attribute
class CollectionAdaptor(B... | apache-2.0 |
sgiavasis/nipype | nipype/pipeline/engine/utils.py | 2 | 50809 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""Utility routines for workflow graphs
"""
from future import standard_library
standard_library.install_aliases()
from builtins import map
from builtins impo... | bsd-3-clause |
sergelhomme/Network_Analysis | Network_Analysis_1_3/network_analysis/network_analysis.py | 1 | 187486 | # -*- coding: utf-8 -*-
#-----------------------------------------------------------
#
# NetworkAnalysis
# Copyright Serge Lhomme
# EMAIL: serge.lhomme (at) u-pec.fr
# WEB : http://sergelhomme.fr/deven.html
#
# Tools for analyzing networks characteristics
#
#--------------------------------------------------... | gpl-2.0 |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/_funnel.py | 1 | 103322 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Funnel(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "funnel"
_valid_props = {
"alignmentgroup",
"cliponaxis",
"connector",
"c... | mit |
farr/carma_pack | src/carmcmc/carma_pack.py | 1 | 68810 | __author__ = 'Brandon C. Kelly'
import numpy as np
import matplotlib.pyplot as plt
from scipy.linalg import solve
from scipy.optimize import minimize
import samplers
import multiprocessing
import _carmcmc as carmcmcLib
class CarmaModel(object):
"""
Class for performing statistical inference assuming a CARMA(... | mit |
caganze/splat | splat/plot.py | 1 | 58220 | from __future__ import print_function, division
"""
.. note::
These are the plotting functions for the SPLAT code
"""
# imports: internal
import copy
import glob
import os
# imports: external
from astropy.coordinates import Angle,SkyCoord # coordinate conversion
import astropy.units as u
import matpl... | mit |
iancrossfield/aries_reduce | phot.py | 1 | 46756 | """Python script for various photometry tasks. See especially
:func:`aperphot`, for basic aperture photometry. If you need
something fancier, try PyRAF, DAOPHOT, etc.
"""
# 2008-12-21 18:27 IJC: Created
from numpy import array, sign, pi, nan, arange
import numpy as np
import pdb
try:
import _chi2
c_chisq = ... | mit |
johannfaouzi/pyts | pyts/classification/tsbf.py | 1 | 30852 | """Code for Time Series Bag-of-Features."""
# Author: Johann Faouzi <johann.faouzi@gmail.com>
# License: BSD-3-Clause
from math import ceil
from numba import njit
import numpy as np
from sklearn.base import BaseEstimator
from sklearn.ensemble import RandomForestClassifier
from sklearn.utils.validation import (
ch... | bsd-3-clause |
thunderhoser/GewitterGefahr | gewittergefahr/gg_utils/gridded_forecasts_test.py | 1 | 33436 | """Unit tests for gridded_forecasts.py."""
import copy
import unittest
import numpy
import pandas
from gewittergefahr.gg_utils import polygons
from gewittergefahr.gg_utils import projections
from gewittergefahr.gg_utils import gridded_forecasts
TOLERANCE = 1e-6
# The following constants are used to test _column_name... | mit |
teonlamont/mne-python | mne/cov.py | 2 | 78672 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis A. Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
from copy import deepcopy
import itertools as itt
from math import log
import os
import numpy as np
from sci... | bsd-3-clause |
CivicKnowledge/ambry_sources | ambry_sources/mpf.py | 1 | 39175 | # -*- coding: utf-8 -*-
"""
Writing data to a partition. The MPR file format is a conversion format that stores
tabular data in rows and associates it with metadata.
Copyright (c) 2015 Civic Knowledge. This file is licensed under the terms of the
Revised BSD License, included in this distribution as LICENSE.txt
"""
i... | bsd-2-clause |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/pandas/io/data.py | 1 | 31493 | """
Module contains tools for collecting data from various remote sources
"""
import warnings
import tempfile
import datetime as dt
import time
from collections import defaultdict
import numpy as np
from pandas.compat import(
StringIO, bytes_to_str, range, lrange, lmap, zip
)
import pandas.compat as compat
fro... | gpl-3.0 |
CompPhysics/MachineLearning | doc/LectureNotes/_build/jupyter_execute/statistics.py | 1 | 60608 | # Elements of Probability Theory and Statistical Data Analysis
## Domains and probabilities
Consider the following simple example, namely the tossing of two dice, resulting in the following possible values
$$
\{2,3,4,5,6,7,8,9,10,11,12\}.
$$
These values are called the *domain*.
To this domain we have the corresp... | cc0-1.0 |
gfyoung/pandas | pandas/core/arrays/datetimes.py | 1 | 79441 | from __future__ import annotations
from datetime import datetime, time, timedelta, tzinfo
from typing import Optional, Union, cast
import warnings
import numpy as np
from pandas._libs import lib, tslib
from pandas._libs.tslibs import (
BaseOffset,
NaT,
NaTType,
Resolution,
Timestamp,
conversi... | bsd-3-clause |
wiheto/teneto | teneto/utils/utils.py | 1 | 36466 | """General utility functions."""
import collections
import itertools
import operator
import json
import numpy as np
import pandas as pd
import scipy.spatial.distance as distance
import teneto
#from ..classes import teneto.TemporalNetwork
#from ..trajectory import rdp
def graphlet2contact(tnet, params=None):
"""
... | gpl-3.0 |
d2l-ai/d2l-zh | d2l/torch.py | 1 | 115099 | # This file is generated automatically through:
# d2lbook build lib
# Don't edit it directly
# Defined in file: ./chapter_preface/index.md
import collections
import hashlib
import math
import os
import random
import re
import shutil
import sys
import tarfile
import time
import zipfile
from collections import defaul... | apache-2.0 |
maropu/spark | python/pyspark/pandas/accessors.py | 2 | 35612 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
aestrivex/cvu | cvu/dataset.py | 1 | 38659 | # (C) Roan LaPlante 2013 rlaplant@nmr.mgh.harvard.edu
#
# This file is part of cvu, the Connectome Visualization Utility.
#
# cvu is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 o... | gpl-3.0 |
feuerchop/increOCSVM | evaluation.py | 1 | 48440 | __author__ = 'LT'
import sys
import matplotlib
matplotlib.use('Agg')
from sklearn import preprocessing, cross_validation, svm
from sklearn.metrics import confusion_matrix, precision_recall_curve, precision_recall_fscore_support, average_precision_score
import pandas as pd
from pandas import Series, crosstab
import nump... | gpl-2.0 |
ocelot-collab/ocelot | ocelot/gui/genesis4_plot.py | 1 | 48026 | """
user interface for viewing genesis simulation results
"""
"""
MEMO
plt.gcf() to get current figure
plt.gca() to get current axis
ax.set_xlabel('')
ax.get_xlim()
ax.set_xlim([0, 1])
ax.set_ylim(ymin=0)
"""
import sys
import os
import csv
import time
import matplotlib
# check if Xserver is connected
# havedispl... | gpl-3.0 |
cellular-nanoscience/pyotic | pyotc/psd.py | 1 | 72043 | # -*- coding: utf-8 -*-
# """
# - Author: steve simmert
# - E-mail: steve.simmert@uni-tuebingen.de
# - Copyright: 2015
# """
"""
Manage power spectral densities measurements.
"""
import pdb
from . import ureg
from . import name_constants as co
from .data_parser import read_PSD_parameter_file
from .data_parser import ... | apache-2.0 |
dschick/udkm1Dsim | udkm1Dsim/structures/layers.py | 1 | 35985 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# The MIT License (MIT)
# Copyright (c) 2020 Daniel Schick
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including with... | mit |
kmunve/TSanalysis | Crocus/crocus_forcing_nc.py | 1 | 36359 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import print_function
from netCDF4 import Dataset, num2date
from string import Template
from datetime import datetime
'''
Create a forcing netcdf file for the snow pack model Crocus.
'''
class CrocusForcing:
def __init__(self, no_points=1, filename=No... | mit |
trichter/qopen | qopen/imaging.py | 1 | 30241 | # Copyright 2015-2019 Tom Eulenfeld, MIT license
"""
Plotting functions
Arguments supported by all plotting functions via its \\*\\*kwargs are:
:fname: file name for the plot output
(if not provided the figure will be left open)
:title: title of the plot
:figsize: figure size (tuple of inches)
:dpi: resolutio... | mit |
edusegzy/pychemqt | tools/UI_Tables.py | 1 | 193622 | #!/usr/bin/python
# -*- coding: utf-8 -*-
###############################################################################
# Library with meos plugin functionality
#
# plugin: QMenu to import in mainwindow with all meos addon functionality
# Implement the plugin functionality with a menu to show in mainwindow
#... | gpl-3.0 |
helgestein/XRDExplorer | main.py | 1 | 35562 | import sys
#QT imports
from PyQt5.QtWidgets import QApplication, QMainWindow, QInputDialog, QLineEdit, QFileDialog, QErrorMessage, QTableWidget, QTableWidgetItem,QTableWidgetItem
from PyQt5 import QtCore, QtWidgets, uic
from main_designer import Ui_MainWindow
# plotting
import matplotlib
matplotlib.use('Qt5Agg')
from m... | gpl-3.0 |
cactusbin/nyt | matplotlib/lib/matplotlib/backends/backend_wx.py | 1 | 72678 | from __future__ import division, print_function
"""
A wxPython backend for matplotlib, based (very heavily) on
backend_template.py and backend_gtk.py
Author: Jeremy O'Donoghue (jeremy@o-donoghue.com)
Derived from original copyright work by John Hunter
(jdhunter@ace.bsd.uchicago.edu)
Copyright (C) Jeremy O'Dono... | unlicense |
jinzishuai/learn2deeplearn | deeplearning.ai/C4.CNN/week3_ObjectDetection/hw/Car detection for Autonomous Driving/Autonomous+driving+application+-+Car+detection+-+v1.py | 1 | 36997 | #!/usr/bin/python3
# coding: utf-8
# # Autonomous driving - Car detection
#
# Welcome to your week 3 programming assignment. You will learn about object detection using the very powerful YOLO model. Many of the ideas in this notebook are described in the two YOLO papers: Redmon et al., 2016 (https://arxiv.org/abs/150... | gpl-3.0 |
sgiavasis/nipype | nipype/algorithms/misc.py | 4 | 51523 | # emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
'''
Miscellaneous algorithms
Change directory to provide relative paths for doctests
>>> import os
>>> filepath = os.path.dirname(os.path.realpath(__file__))
>>> datadir = os.path.realpath(... | bsd-3-clause |
winklerand/pandas | pandas/tests/frame/test_operators.py | 1 | 45036 | # -*- coding: utf-8 -*-
from __future__ import print_function
from collections import deque
from datetime import datetime
import operator
import pytest
from numpy import nan, random
import numpy as np
from pandas.compat import lrange, range
from pandas import compat
from pandas import (DataFrame, Series, MultiIndex... | bsd-3-clause |
mozata/menpo | menpo/visualize/widgets/base.py | 1 | 82213 | import numpy as np
from collections import Sized
from matplotlib.pyplot import show as pltshow
import ipywidgets
import IPython.display as ipydisplay
from menpo.visualize.viewmatplotlib import (MatplotlibImageViewer2d,
sample_colours_from_colourmap)
from .options import (R... | bsd-3-clause |
louispotok/pandas | pandas/core/indexes/base.py | 1 | 168499 | from datetime import datetime, timedelta
import warnings
import operator
from textwrap import dedent
import numpy as np
from pandas._libs import (lib, index as libindex, tslib as libts,
algos as libalgos, join as libjoin,
Timedelta)
from pandas._libs.lib import is_da... | bsd-3-clause |
anntzer/scikit-learn | sklearn/manifold/tests/test_t_sne.py | 2 | 37837 | import sys
from io import StringIO
import numpy as np
from numpy.testing import assert_allclose
import scipy.sparse as sp
import pytest
from sklearn.neighbors import NearestNeighbors
from sklearn.neighbors import kneighbors_graph
from sklearn.exceptions import EfficiencyWarning
from sklearn.utils._testing import ignor... | bsd-3-clause |
pravsripad/jumeg | jumeg/decompose/ica.py | 2 | 35344 | # ICA functions
'''
authors:
Juergen Dammers
Lukas Breuer
email: j.dammers@fz-juelich.de
Change history:
21.01.2020: - changes in ica_array
- now returns an MNE-type of ICA object (default)
- in fastica changed default to whiten=False
- added fu... | bsd-3-clause |
ARM-software/lisa | lisa/stats.py | 1 | 45094 | # SPDX-License-Identifier: Apache-2.0
#
# Copyright (C) 2020, Arm Limited and contributors.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# ... | apache-2.0 |
Stargrazer82301/CAAPR | CAAPR/CAAPR_AstroMagic/PTS/pts/core/plot/scaling.py | 1 | 32298 | #!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | mit |
charanpald/wallhack | wallhack/influence2/ArnetMinerDataset.py | 1 | 31195 | import os
import numpy
import logging
import difflib
import csv
import re
import sklearn.feature_extraction.text as text
import gc
import scipy.sparse
import igraph
import array
import itertools
import gensim.matutils
import scipy.io
from gensim.models.ldamodel import LdaModel
from gensim.models.lsimodel import ... | gpl-3.0 |
ProjectPyRhO/PyRhO | pyrho/models.py | 1 | 43131 | """
Rhodopsin model class and functions
* Three-state model :math:`\{C, O, D\}`
* Four-state model :math:`\{C_1, O_1, O_2, C_2\}`
* Six-state model :math:`\{C_1, I_1, O_1, O_2, I_2, C_2\}`
"""
from __future__ import print_function, division
import warnings
import logging
import abc
import itertools
from co... | bsd-3-clause |
wilsonkichoi/zipline | zipline/data/us_equity_pricing.py | 1 | 42283 | # Copyright 2015 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writ... | apache-2.0 |
yanheven/pyfolio | pyfolio/timeseries.py | 2 | 32352 | #
# Copyright 2015 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
drueffer/apage_rom | plugins/Patterns.py | 1 | 92024 | # -*- coding: utf-8 -*-
"""
Created on Fri Aug 17 11:17:55 2012
@author: rueffer
"""
import numpy as np
import time
from PatternGenerator import *
# Must always be (self,name,library,..*args,unitFact=1E3,**kwargs)
# Please indicate the name of the pattern and give a dict with name allPatterns
## TODO:... | gpl-2.0 |
tseaver/google-cloud-python | bigquery/tests/unit/test_client.py | 1 | 259202 | # Copyright 2015 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | apache-2.0 |
Erotemic/ibeis | ibeis/algo/graph/core.py | 1 | 55530 | # -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function, unicode_literals
import numpy as np # NOQA
import utool as ut
# import logging
import itertools as it
import copy
import six
import collections
from ibeis import constants as const
from ibeis.algo.graph import nx_dynamic_graph
# ... | apache-2.0 |
napsternxg/gensim | gensim/utils.py | 1 | 65645 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (C) 2010 Radim Rehurek <radimrehurek@seznam.cz>
# Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html
"""Various general utility functions."""
from __future__ import with_statement
from contextlib import contextmanager
import collections... | gpl-3.0 |
ranaroussi/qtpylib | qtpylib/broker.py | 1 | 38577 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# QTPyLib: Quantitative Trading Python Library
# https://github.com/ranaroussi/qtpylib
#
# Copyright 2016-2018 Ran Aroussi
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obta... | apache-2.0 |
leggitta/mne-python | mne/epochs.py | 1 | 103920 | """Tools for working with epoched data"""
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Daniel Strohmeier <daniel.strohmeier@tu-ilmenau.de>
# Denis Engemann <denis.engemann@gmail.com>
# Mainak Jas <mainak@neuro... | bsd-3-clause |
kwhitehall/climate | ocw/plotter.py | 1 | 33918 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
dssg/wikienergy | disaggregator/build/pandas/pandas/tseries/tests/test_offsets.py | 1 | 139977 | import os
from datetime import date, datetime, timedelta
from dateutil.relativedelta import relativedelta
from pandas.compat import range
from pandas import compat
import nose
from nose.tools import assert_raises
import numpy as np
from pandas.core.datetools import (
bday, BDay, CDay, BQuarterEnd, BMonthEnd,
... | mit |
HesselTjeerdsma/Cyber-Physical-Pacman-Game | Algor/flask/lib/python2.7/site-packages/scipy/signal/ltisys.py | 1 | 123389 | """
ltisys -- a collection of classes and functions for modeling linear
time invariant systems.
"""
from __future__ import division, print_function, absolute_import
#
# Author: Travis Oliphant 2001
#
# Feb 2010: Warren Weckesser
# Rewrote lsim2 and added impulse2.
# Apr 2011: Jeffrey Armstrong <jeff@approximatrix.co... | apache-2.0 |
toobaz/pandas | pandas/io/formats/format.py | 1 | 62027 | """
Internal module for formatting output data in csv, html,
and latex files. This module also applies to display formatting.
"""
from functools import partial
from io import StringIO
import re
from shutil import get_terminal_size
from typing import (
TYPE_CHECKING,
Any,
Callable,
Dict,
Iterable,
... | bsd-3-clause |
Jorge-C/bipy | skbio/draw/distributions.py | 1 | 30884 | #!/usr/bin/env python
"""
Distribution visualizations (:mod:`skbio.draw.distributions`)
=============================================================
.. currentmodule:: skbio.draw.distributions
This module provides plotting functionality for visualizing distributions.
Functions
---------
.. autosummary::
:toctre... | bsd-3-clause |
sstoma/CellProfiler | CellProfiler.py | 1 | 40944 | """
CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.
Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2015 Broad Institute
All rights reserved.
Please see the AUTHORS file for credits.
Website: http://www.cellprofiler.org... | gpl-2.0 |
MattNolanLab/ei-attractor | noisefigs/noisefigs/plotters/gamma.py | 1 | 38849 | '''Plotters for gamma oscillation-related data.
.. currentmodule:: noisefigs.plotters.gamma
Classes
-------
.. autosummary::
GammaSweepsPlotter
GenericGammaPlotter
Generic1DGammaPlotter
GammaDetailedNoisePlotter
GammaExamplePlotter
GammaScatterAllPlotter
GammaFreqGridsScatterAllPlotter
... | gpl-3.0 |
aarchiba/scipy | scipy/stats/stats.py | 1 | 233527 | # Copyright 2002 Gary Strangman. All rights reserved
# Copyright 2002-2016 The SciPy Developers
#
# The original code from Gary Strangman was heavily adapted for
# use in SciPy by Travis Oliphant. The original code came with the
# following disclaimer:
#
# This software is provided "as-is". There are no expressed or... | bsd-3-clause |
avistous/QSTK | Bin/report.py | 1 | 49161 | '''
(c) 2011, 2012 Georgia Tech Research Corporation
This source code is released under the New BSD license. Please see
http://wiki.quantsoftware.org/index.php?title=QSTK_License
for license details.
Created on Jan 1, 2011
@author:Drew Bratcher
@contact: dbratcher@gatech.edu
@summary: Contains tutorial for... | bsd-3-clause |
NicWayand/xray | xarray/test/test_plot.py | 1 | 41802 | import inspect
import numpy as np
import pandas as pd
from xarray import DataArray
import xarray.plot as xplt
from xarray.plot.plot import _infer_interval_breaks
from xarray.plot.utils import (_determine_cmap_params,
_build_discrete_cmap,
_color_palette)
... | apache-2.0 |
ndingwall/scikit-learn | sklearn/inspection/_plot/partial_dependence.py | 1 | 39105 | import numbers
from itertools import chain
from math import ceil
import numpy as np
from scipy import sparse
from scipy.stats.mstats import mquantiles
from joblib import Parallel
from .. import partial_dependence
from ...base import is_regressor
from ...utils import check_array
from ...utils import check_matplotlib_s... | bsd-3-clause |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/tests/indexes/test_datetimelike.py | 2 | 36423 | # -*- coding: utf-8 -*-
from datetime import timedelta, time
import numpy as np
from pandas import (date_range, period_range,
Series, Index, DatetimeIndex,
TimedeltaIndex, PeriodIndex)
import pandas.util.testing as tm
import pandas as pd
from pandas.lib import Timestamp
fro... | mit |
INM-6/viziphant | viziphant/rasterplot.py | 1 | 34068 | """
Raster and event plots of spike times
-------------------------------------
.. autosummary::
:toctree: toctree/rasterplot/
eventplot
rasterplot
rasterplot_rates
"""
# Copyright 2017-2020 by the Viziphant team, see `doc/authors.rst`.
# License: Modified BSD, see LICENSE.txt for details.
import ma... | bsd-3-clause |
teoliphant/scipy | scipy/signal/windows.py | 2 | 44370 | """The suite of window functions."""
import numpy as np
from scipy import special, linalg
from scipy.fftpack import fft
__all__ = ['boxcar', 'triang', 'parzen', 'bohman', 'blackman', 'nuttall',
'blackmanharris', 'flattop', 'bartlett', 'hanning', 'barthann',
'hamming', 'kaiser', 'gaussian', 'gene... | bsd-3-clause |
Pappulab/localCIDER | localcider/sequenceParameters.py | 1 | 78167 | """
!--------------------------------------------------------------------------!
! LICENSE INFO: !
!--------------------------------------------------------------------------!
! This file is part of localCIDER. ... | gpl-2.0 |
pradyu1993/scikit-learn | sklearn/linear_model/least_angle.py | 1 | 41630 | """
Least Angle Regression algorithm. See the documentation on the
Generalized Linear Model for a complete discussion.
"""
# Author: Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux
#
# License: BSD Style.
from math import log
import sys
... | bsd-3-clause |
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