repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
Winand/pandas | pandas/tests/indexes/datetimes/test_tools.py | 1 | 65753 | """ test to_datetime """
import sys
import pytz
import pytest
import locale
import calendar
import dateutil
import numpy as np
from dateutil.parser import parse
from datetime import datetime, date, time
from distutils.version import LooseVersion
import pandas as pd
from pandas._libs import tslib
from pandas._libs.tsl... | bsd-3-clause |
tsherwen/AC_tools | AC_tools/GEOSChem_bpch.py | 1 | 191826 | #!/usr/bin/python
# -*- coding: utf-8 -*-
"""
Functions for use with the GEOS-Chem chemical transport model (CTM).
Use help(<name of function>) to get details on a particular function.
NOTE(S):
- This module is underdevelopment vestigial/inefficient code is being removed/updated.
- Where external code is used credi... | mit |
SeanMcGrath/ScopeOut | scopeout/client.py | 1 | 35619 | """
ScopeOut GUI
Defines GUI client that instantiates and controls widgets and threads.
"""
# Set matplotlib to call PyQt5
from matplotlib import rcParams
rcParams['backend'] = 'Qt5Agg'
import threading
import os
import logging
from datetime import date, datetime
from functools import partial
from PyQt5 import QtWi... | mit |
bdh1011/wau | venv/lib/python2.7/site-packages/pandas/tseries/frequencies.py | 1 | 32682 | from datetime import datetime,timedelta
from pandas.compat import range, long, zip
from pandas import compat
import re
import numpy as np
from pandas.core.algorithms import unique
from pandas.tseries.offsets import DateOffset
from pandas.util.decorators import cache_readonly
import pandas.tseries.offsets as offsets
i... | mit |
gfyoung/scipy | scipy/stats/_multivariate.py | 1 | 120221 | #
# Author: Joris Vankerschaver 2013
#
from __future__ import division, print_function, absolute_import
import math
import numpy as np
from numpy import asarray_chkfinite, asarray
import scipy.linalg
from scipy.misc import doccer
from scipy.special import gammaln, psi, multigammaln, xlogy, entr
from scipy._lib._util i... | bsd-3-clause |
fboers/jumegX | epocher/jumeg_epocher_ctps.py | 1 | 36561 | #import os
import numpy as np
import pandas as pd
import mne
#from jumeg.epocher.jumeg_epocher import jumeg_epocher
from jumeg.jumeg_base import jumeg_base
from jumeg.epocher.jumeg_epocher_events import JuMEG_Epocher_Events
from jumeg.filter.jumeg_filter import jumeg_filter
# from jumeg.ctps import ... | bsd-3-clause |
mueller-lab/PyFRAP | pyfrp/modules/pyfrp_img_module.py | 1 | 54982 | #=====================================================================================================================================
#Copyright
#=====================================================================================================================================
#Copyright (C) 2014 Alexander Blaessle... | gpl-3.0 |
bkaiser94/red_cam_pipeline | ReduceSpec_tools.py | 1 | 73889 | # -*- coding: utf-8 -*-
"""
Created on Sun Aug 23 20:48:10 2015
@author: jmeza
"""
# ===========================================================================
# Packages ==================================================================
# ===========================================================================
... | mit |
lorenzo-desantis/mne-python | mne/tests/test_epochs.py | 1 | 73575 | # Author: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
import os.path as op
from copy import deepcopy
from nose.tools import (assert_true, assert_equal, assert_raises,
assert_not_equal)
from numpy.... | bsd-3-clause |
Kirubaharan/hydrology | ch_463/ch_463_daily.py | 1 | 38356 | __author__ = 'kiruba'
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
import checkdam.checkdam as cd
from matplotlib import rc
import matplotlib.cm as cmx
import matplotlib.colors as colors
from datetime import timedelta
import math
import ccy_classic_lstsqr
# latex parameters
rc('font', **{'fam... | gpl-3.0 |
deokwooj/DDEA | webgui/pre_bn_processing.py | 1 | 38364 | #!/usr/bin/python
# To force float point division
from __future__ import division
"""
Created on Thu Mar 13 16:34:54 2014
Author : Deokwoo Jung
E-mail : deokwoo.jung@gmail.com
"""
import numpy as np
from scipy import stats
from scipy.interpolate import interp1d
from sklearn import mixture
from sklearn.cluster impo... | gpl-2.0 |
simpeg/discretize | discretize/curvilinear_mesh.py | 1 | 37121 | import numpy as np
from discretize.utils import (
mkvc,
index_cube,
face_info,
volume_tetrahedron,
make_boundary_bool,
)
from discretize.base import BaseRectangularMesh
from discretize.operators import DiffOperators, InnerProducts
from discretize.mixins import InterfaceMixins
from discretize.utils.... | mit |
mahajrod/MACE | MACE/Routines/Drawing.py | 1 | 49695 | #!/usr/bin/env python
import os
import math
from collections import Iterable, OrderedDict
import numpy as np
import matplotlib
matplotlib.use('Agg')
os.environ['MPLCONFIGDIR'] = '/tmp/'
import matplotlib.pyplot as plt
plt.ioff()
from matplotlib.patches import Rectangle
from matplotlib.colors import LinearSegmentedC... | apache-2.0 |
yoziru-desu/airflow | airflow/www/views.py | 1 | 71927 | import sys
import os
import socket
from functools import wraps
from datetime import datetime, timedelta
import dateutil.parser
import copy
from itertools import chain, product
from past.utils import old_div
from past.builtins import basestring
import inspect
import traceback
import sqlalchemy as sqla
from sqlalche... | apache-2.0 |
matz-e/lobster | lobster/commands/plot.py | 1 | 60092 | # vim: fileencoding=utf-8
from collections import defaultdict, Counter
from cycler import cycler
from datetime import datetime
import glob
import gzip
import itertools
import jinja2
import logging
import multiprocessing
import os
import pickle
import shutil
import sqlite3
import signal
import time
import re
import str... | mit |
NeuroanatomyAndConnectivity/opendata | scripts/utils/conversion.py | 1 | 140244 | # -*- coding: utf-8 -*-
import pandas as pd
import seaborn as sns
sns.set_style('white')
##############################################################################
#################### Creative Achievement Questionnaire ######################
#####################################################################... | mit |
idaholab/raven | framework/DataObjects/DataSet.py | 1 | 105621 | # Copyright 2017 Battelle Energy Alliance, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | apache-2.0 |
ainafp/nilearn | doc/sphinxext/gen_rst.py | 1 | 36232 | """
Example generation for the scikit learn
Generate the rst files for the examples by iterating over the python
example files.
Files that generate images should start with 'plot'
"""
from time import time
import os
import re
import shutil
import traceback
import glob
import sys
from StringIO import StringIO
import ... | bsd-3-clause |
fraricci/pymatgen | pymatgen/analysis/graphs.py | 1 | 114612 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
Module for graph representations of crystals.
"""
import warnings
import subprocess
import numpy as np
import os.path
import copy
from itertools import combinations
from pymatgen.core import Structure, La... | mit |
taylorhxu/neurosynth | neurosynth/base/dataset.py | 1 | 39571 | """ Base classes for representing and manipulating data. """
import logging
import re
import os
import sys
import numpy as np
import pandas as pd
from scipy import sparse
import mappable
from neurosynth.base import mask, imageutils, transformations
from neurosynth.base import lexparser as lp
from neurosynth.utils impo... | mit |
cpbl/pystata | codebooks.py | 1 | 92642 | #!/usr/bin/python
"""
To do:
- In Stata, "label list" gives an instant readout of all value labels. Use this rather than labelbook !?! [oct 2011]
2013: Also, use statsmodels' pydta package as soon as its slightly mature! (now?)
2013: Major issue with value labels has been horrid unicode support by Stata. How to ge... | gpl-2.0 |
TheLady/Lexos | managers/file_manager.py | 1 | 35788 | import StringIO
from math import sqrt, log, exp
import shutil
import zipfile
import os
from os.path import join as pathjoin
from os import makedirs
import chardet
from flask import request, send_file
from sklearn.feature_extraction.text import CountVectorizer, TfidfTransformer
from managers.lexos_file import LexosFil... | mit |
Xeralux/tensorflow | tensorflow/python/estimator/canned/baseline_test.py | 1 | 54886 | # Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
quantopian/zipline | zipline/assets/asset_writer.py | 1 | 34740 | #
# Copyright 2015 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
zfrenchee/pandas | pandas/tests/indexes/test_category.py | 1 | 44849 | # -*- coding: utf-8 -*-
import pytest
import pandas.util.testing as tm
from pandas.core.indexes.api import Index, CategoricalIndex
from pandas.core.dtypes.dtypes import CategoricalDtype
from .common import Base
from pandas.compat import range, PY3
import numpy as np
from pandas import Categorical, IntervalIndex, c... | bsd-3-clause |
mwaskom/lyman | lyman/visualizations.py | 1 | 30638 | from __future__ import division
import warnings
from six import string_types
import numpy as np
import pandas as pd
import matplotlib as mpl
import matplotlib.pyplot as plt
from scipy import ndimage, signal
import nibabel as nib
class Mosaic(object):
def __init__(self, anat, stat=None, mask=None, n_col=9, step=... | bsd-3-clause |
iris-edu/ispaq | ispaq/irisseismic.py | 1 | 41582 | # -*- coding: utf-8 -*-
"""
Python module containing wrappers for the IRISSeismic R package.
:copyright:
Mazama Science
:license:
GNU Lesser General Public License, Version 3
(http://www.gnu.org/copyleft/lesser.html)
"""
from __future__ import (absolute_import, division, print_function)
from future.types i... | lgpl-3.0 |
basnijholt/holoviews | holoviews/plotting/plot.py | 1 | 64384 | """
Public API for all plots supported by HoloViews, regardless of
plotting package or backend. Every plotting classes must be a subclass
of this Plot baseclass.
"""
import warnings
from itertools import groupby, product
from collections import Counter, defaultdict
import numpy as np
import param
from ..core import ... | bsd-3-clause |
freeman-lab/dask | dask/dataframe/core.py | 1 | 41050 | from __future__ import division
from itertools import count
from math import ceil, sqrt
from functools import wraps
import bisect
import os
from toolz import (merge, partial, accumulate, unique, first, dissoc, valmap,
first, partition)
import toolz
from operator import getitem, setitem
from datetime import dat... | bsd-3-clause |
BryanCutler/spark | python/pyspark/pandas/tests/test_dataframe.py | 1 | 220991 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
bachiraoun/fullrmc | Constraints/AngleConstraints.py | 1 | 48412 | """
AngleConstraints contains classes for all constraints related angles
between atoms.
.. inheritance-diagram:: fullrmc.Constraints.AngleConstraints
:parts: 1
"""
# standard libraries imports
from __future__ import print_function
import copy, re
# external libraries imports
import numpy as np
# fullrmc imports
... | agpl-3.0 |
bolozna/EDENetworks | RawDataWindow.py | 1 | 37921 | """
EDENetworks, a genetic network analyzer
Copyright (C) 2011 Aalto University
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version... | gpl-2.0 |
jhamman/xarray | xarray/tests/test_computation.py | 1 | 36293 | import functools
import operator
import pickle
import numpy as np
import pandas as pd
import pytest
from numpy.testing import assert_array_equal
import xarray as xr
from xarray.core.computation import (
_UFuncSignature,
apply_ufunc,
broadcast_compat_data,
collect_dict_values,
join_dict_keys,
o... | apache-2.0 |
jesuscript/topo-mpi | contrib/jacommands.py | 1 | 46822 | # -*- coding: utf-8 -*-
import __main__
import numpy
import pylab
import os.path
import os
import copy
import pdb
import param
import topo.pattern.basic
import topo.command.analysis
from math import pi, sqrt, exp, pow
from numpy.oldnumeric import zeros, Float, sum
from topo.projection.basic import CFProjection, Share... | bsd-3-clause |
1a1a11a/mimircache | PyMimircache/top/cachecow.py | 1 | 44906 | # coding=utf-8
"""
this module offers the upper level API to user, it currently supports four types of operations,
* **trace loading**
* **trace information retrieving**
* **trace profiling**
* **plotting**
Author: Jason Yang <peter.waynechina@gmail.com> 2017/08
"""
from matplotlib.ticker import FuncFormatter
impor... | gpl-3.0 |
mengyun1993/RNN-binary | rnn14-new.py | 1 | 30235 | """ Vanilla RNN
@author Graham Taylor
"""
import numpy as np
import theano
import theano.tensor as T
from sklearn.base import BaseEstimator
import logging
import time
import os
import datetime
import pickle as pickle
import math
import matplotlib.pyplot as plt
plt.ion()
mode = theano.Mode(linker='cvm')
#mode = '... | bsd-3-clause |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/tests/test_generic.py | 1 | 67602 | # -*- coding: utf-8 -*-
# pylint: disable-msg=E1101,W0612
from operator import methodcaller
import nose
import numpy as np
from numpy import nan
import pandas as pd
from pandas import (Index, Series, DataFrame, Panel, isnull,
date_range, period_range, Panel4D)
from pandas.core.index import MultiIn... | mit |
wxchan/LightGBM | python-package/lightgbm/basic.py | 1 | 73714 | # coding: utf-8
# pylint: disable = invalid-name, C0111, C0301
# pylint: disable = R0912, R0913, R0914, W0105, W0201, W0212
"""Wrapper c_api of LightGBM"""
from __future__ import absolute_import
import copy
import ctypes
import os
import warnings
from tempfile import NamedTemporaryFile
import numpy as np
import scipy... | mit |
dungvtdev/upsbayescpm | bayespy/plot.py | 1 | 36219 | ################################################################################
# Copyright (C) 2011-2013 Jaakko Luttinen
#
# This file is licensed under the MIT License.
################################################################################
"""
Functions for plotting nodes.
Functions
=========
.. curren... | mit |
stscieisenhamer/glue | glue/viewers/custom/qt/custom_viewer.py | 1 | 42627 | """
This module provides utilities for creating custom data viewers. The
goal of this module is to make it easy for users to make new
data viewers by focusing on matplotlib visualization logic,
and not UI or event processing logic.
The end user typically interacts with this code via
:func:`glue.custom_viewer`
"""
# I... | bsd-3-clause |
dtavan/PyBPS | pybps/core.py | 1 | 36546 | """
Core classes and functions of the pybps package
"""
# Common imports
import os
import sys
import re
import sqlite3
from copy import deepcopy
from multiprocessing import Pool, cpu_count, freeze_support
from time import time, sleep
from random import uniform
from shutil import copy, copytree
from string import Templ... | bsd-3-clause |
izapolsk/integration_tests | cfme/utils/smem_memory_monitor.py | 1 | 67697 | """Monitor Memory on a CFME/Miq appliance and builds report&graphs displaying usage per process."""
import json
import os
import time
import traceback
from collections import OrderedDict
from datetime import datetime
from threading import Thread
import yaml
from yaycl import AttrDict
from cfme.utils.conf import cfme_... | gpl-2.0 |
josephsalmon/AVp | Demo_AVp.py | 1 | 34884 | # -*- coding: utf-8 -*-
"""
Created on Wed Jun 25 09:39:45 2014
@author: joseph salmon
"""
import time
import seaborn as sns
import numpy as np
import pylab as plt
from lasso_scenarii import ScenarioPowDecayCor # , ScenarioEquiCor
from noise_estimation_functions import SqrtLasso_SZ
from general_tools import Predictio... | bsd-3-clause |
Chilipp/psyplot | tests/test_data.py | 1 | 66125 | """Test module of the :mod:`psyplot.data` module"""
import os
import os.path as osp
import six
import unittest
import pandas as pd
import xarray as xr
from psyplot.compat.pycompat import range
import psyplot.data as psyd
import _base_testing as bt
import numpy as np
from collections import OrderedDict
import tempfile
... | gpl-2.0 |
Morisset/pySSN | pyssn/phyat_lists/manage_phyat_list.py | 1 | 35369 | import numpy as np
import pyneb as pn
import matplotlib.pyplot as plt
from pyneb.utils.physics import Z, IP, gsFromAtom, Z_inv
from pyneb.utils.misc import int_to_roman, parseAtom
import os
import shutil
import time
from glob import glob
from pyssn.utils.misc import split_atom, read_data, execution_path
pn.atomicData.... | gpl-3.0 |
FCP-INDI/C-PAC | CPAC/pipeline/cpac_group_runner.py | 1 | 81704 | import os
import fnmatch
import pandas
def load_config_yml(config_file, individual=False):
# loads a configuration YAML file
#
# input
# config_file: full filepath to YAML (.yml) file
#
# output
# config: Configuration object
import os
import yaml
import yamlordereddictlo... | bsd-3-clause |
qiime2/q2-diversity | q2_diversity/plugin_setup.py | 1 | 39197 | # ----------------------------------------------------------------------------
# Copyright (c) 2016-2021, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
opencobra/cobrapy | src/cobra/test/test_core/test_model.py | 1 | 37178 | # -*- coding: utf-8 -*-
"""Test functions of model.py"""
from __future__ import absolute_import
import os
import warnings
from copy import copy, deepcopy
from math import isnan
import numpy as np
import pandas as pd
import pytest
from optlang.symbolics import Zero
from cobra.core import Group, Metabolite, Model, R... | gpl-2.0 |
datapythonista/pandas | pandas/tests/io/parser/test_parse_dates.py | 3 | 49817 | """
Tests date parsing functionality for all of the
parsers defined in parsers.py
"""
from datetime import (
date,
datetime,
)
from io import StringIO
from dateutil.parser import parse as du_parse
from hypothesis import (
given,
settings,
strategies as st,
)
import numpy as np
import pytest
import... | bsd-3-clause |
licco/zipline | zipline/algorithm.py | 1 | 32696 | #
# Copyright 2014 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
JT5D/scikit-learn | sklearn/ensemble/gradient_boosting.py | 1 | 54004 | """Gradient Boosted Regression Trees
This module contains methods for fitting gradient boosted regression trees for
both classification and regression.
The module structure is the following:
- The ``BaseGradientBoosting`` base class implements a common ``fit`` method
for all the estimators in the module. Regressio... | bsd-3-clause |
hypergravity/hrs | twodspec/extern/interpolate.py | 1 | 48552 | # -*- coding: utf-8 -*-
from __future__ import absolute_import, division
import numpy as np
import scipy.signal
# import scipy.sparse.linalg # @UnusedImport
import scipy.sparse as sparse
from numpy import ones, zeros, prod, sin, diff, pi, inf, vstack, linspace
from scipy.interpolate import BPoly, interp1d
# from wa... | bsd-3-clause |
arnavd96/Cinemiezer | myvenv/lib/python3.4/site-packages/music21/audioSearch/__init__.py | 1 | 34550 | # -*- coding: utf-8 -*-
#------------------------------------------------------------------------------
# Name: audioSearch.py
# Purpose: base subroutines for all audioSearching and score following
# routines
#
# Authors: Jordi Bartolome
# Michael Scott Cuthbert
#
... | mit |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/_waterfall.py | 1 | 104789 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Waterfall(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "waterfall"
_valid_props = {
"alignmentgroup",
"base",
"cliponaxis",
"... | mit |
jjgomera/pychemqt | equipment/distillation.py | 1 | 40751 | #!/usr/bin/python3
# -*- coding: utf-8 -*-
"""Pychemqt, Chemical Engineering Process simulator
Copyright (C) 2009-2017, Juan José Gómez Romera <jjgomera@gmail.com>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Softwar... | gpl-3.0 |
santiago-salas-v/walas | vandenbussche_froment.py | 1 | 58112 | import numpy as np
import matplotlib.pyplot as plt
from matplotlib import lines
from matplotlib.lines import Line2D
from scipy.integrate import odeint
# Journal of Catalysis, 1996, 161. Jg., Nr. 1, S. 1-10.
# Bezugdaten: 'Løvik, Ingvild. "Modelling, estimation and optimization
# of the methanol synthesis with catalys... | mit |
bachiraoun/fullrmc | Constraints/DihedralAngleConstraints.py | 1 | 61732 | """
ImproperAngleConstraints contains classes for all constraint's related to
improper angles between bonded atoms.
.. inheritance-diagram:: fullrmc.Constraints.ImproperAngleConstraints
:parts: 1
"""
# standard libraries imports
from __future__ import print_function
import copy, re
# external libraries imports
im... | agpl-3.0 |
TomTranter/OpenPNM | openpnm/core/Base.py | 1 | 72439 | import warnings
import numpy as np
import scipy as sp
import pandas as pd
from collections import namedtuple
from openpnm.utils import Workspace, logging
from openpnm.utils.misc import PrintableList, SettingsDict, Docorator
docstr = Docorator()
logger = logging.getLogger(__name__)
ws = Workspace()
@docstr.get_section... | mit |
loli/sklearn-ensembletrees | sklearn/tree/tree.py | 1 | 34641 | """
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | bsd-3-clause |
BRAINSia/tract_querier | tract_querier/tract_math/operations.py | 1 | 31095 | from .decorator import tract_math_operation, set_dictionary_from_use_filenames_as_index
from warnings import warn
import numpy
import nibabel
from nibabel.spatialimages import SpatialImage
from ..tractography import (
Tractography, tractography_to_file, tractography_from_files
)
import sys
import traceback
fro... | bsd-3-clause |
pylayers/pylayers | pylayers/util/pyutil.py | 1 | 53443 | #!/usr/bin/python
#-*- coding:Utf-8 -*-
r"""
.. currentmodule:: pylayers.util.pyutil
.. autosummary::
:toctree: generated
delay
lt2idic
getlong
getshort
getdir
shp
dimcmp
tstincl
ininter
cshift
LegFunc
ExpFunc
InvFunc
PowFunc
randcol
coldict
crea... | mit |
MPIBGC-TEE/CompartmentalSystems | tests/Test_helpers_reservoir.py | 1 | 42129 | #!/usr/bin/env python3
# vim:set ff=unix expandtab ts=4 sw=4:
#from concurrencytest import ConcurrentTestSuite, fork_for_tests
import sys
import unittest
import matplotlib
matplotlib.use('Agg') # Must be before importing matplotlib.pyplot or pylab!
import matplotlib.pyplot as plt
import numpy as np
from sympy import (
... | mit |
wbinventor/openmc | openmc/mgxs/mgxs.py | 1 | 252617 | from collections import OrderedDict
from numbers import Integral
import warnings
import os
import copy
from abc import ABCMeta
import numpy as np
import h5py
import openmc
import openmc.checkvalue as cv
from openmc.tallies import ESTIMATOR_TYPES
from openmc.mgxs import EnergyGroups
# Supported cross section types
M... | mit |
sebwink/deregnet | python/deregnet/graphs.py | 1 | 37195 | '''
'''
import os
import zipfile
import requests
import pandas as pd
import igraph as ig
from biomap import BioMap
################################################################################
# data path #
#######################################... | bsd-3-clause |
kklmn/xrt | xrt/backends/raycing/sources_synchr.py | 1 | 98954 | # -*- coding: utf-8 -*-
__author__ = "Konstantin Klementiev", "Roman Chernikov"
__date__ = "20 Sep 2016"
import os
import sys
#import pickle
import numpy as np
from scipy import optimize
from scipy import special
import inspect
from .. import raycing
from . import myopencl as mcl
from .sources_beams import Beam, allA... | mit |
Avsecz/keras-hyperopt | kopt/hyopt.py | 1 | 32526 | """Train the models
"""
from __future__ import absolute_import
from __future__ import print_function
from keras.callbacks import EarlyStopping, History, TensorBoard, ModelCheckpoint
from keras.models import load_model
import hyperopt
from hyperopt.utils import coarse_utcnow
from hyperopt.mongoexp import MongoTrials
imp... | mit |
gem/oq-engine | openquake/hazardlib/contexts.py | 1 | 48336 | # -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (C) 2018-2021 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the Licen... | agpl-3.0 |
joachimwolff/minHashNearestNeighbors | sparse_neighbors_search/neighbors/minHash.py | 1 | 30670 | # Copyright 2016, 2017, 2018, 2019, 2020 Joachim Wolff
# PhD Thesis
#
# Copyright 2015, 2016 Joachim Wolff
# Master Thesis
# Tutor: Fabrizio Costa
# Winter semester 2015/2016
#
# Chair of Bioinformatics
# Department of Computer Science
# Faculty of Engineering
# Albert-Ludwigs-University Freiburg im Breisgau
__author_... | mit |
jepegit/cellpy | cellpy/utils/plotutils.py | 1 | 41469 | # -*- coding: utf-8 -*-
"""
Utilities for helping to plot cellpy-data.
"""
import os
from io import StringIO
import sys
import warnings
import importlib
import logging
import itertools
import collections
from pathlib import Path
from cellpy.parameters.internal_settings import (
get_headers_summary,
get_header... | mit |
teonlamont/mne-python | mne/viz/_3d.py | 2 | 103472 | # -*- coding: utf-8 -*-
"""Functions to make 3D plots with M/EEG data."""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <lar... | bsd-3-clause |
pizzathief/scipy | scipy/signal/filter_design.py | 1 | 161513 | """Filter design.
"""
import math
import operator
import warnings
import numpy
import numpy as np
from numpy import (atleast_1d, poly, polyval, roots, real, asarray,
resize, pi, absolute, logspace, r_, sqrt, tan, log10,
arctan, arcsinh, sin, exp, cosh, arccosh, ceil, conjugate,
... | bsd-3-clause |
vortex-ape/scikit-learn | sklearn/model_selection/tests/test_validation.py | 2 | 65104 | """Test the validation module"""
from __future__ import division
import sys
import warnings
import tempfile
import os
from time import sleep
import pytest
import numpy as np
from scipy.sparse import coo_matrix, csr_matrix
from sklearn.exceptions import FitFailedWarning
from sklearn.model_selection.tests.test_search ... | bsd-3-clause |
apache/incubator-superset | superset/viz_sip38.py | 1 | 94073 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
PawarPawan/h2o-v3 | h2o-py/h2o/frame.py | 1 | 48811 | # -*- coding: utf-8 -*-
# import numpy no numpy cuz windoz
import collections, csv, itertools, os, re, tempfile, uuid, urllib2, sys, urllib,imp,copy
from expr import h2o,ExprNode
import gc
from group_by import GroupBy
class H2OFrame:
# Magical count-of-5: (get 2 more when looking at it in debug mode)
# 2 f... | apache-2.0 |
feranick/SpectralMachine | Archive/20170808a/SpectraLearnPredict.py | 1 | 65966 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
'''
**********************************************************
*
* SpectraLearnPredict
* Perform Machine Learning on Spectroscopy Data.
* version: 20170808a
*
* Uses: Deep Neural Networks, TensorFlow, SVM, PCA, K-Means
*
* By: Nicola Ferralis <feranick@hotmail.com>
*
*****... | gpl-3.0 |
nburn42/tensorflow | tensorflow/contrib/metrics/python/ops/metric_ops_test.py | 1 | 275656 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
henry0312/LightGBM | python-package/lightgbm/engine.py | 1 | 30379 | # coding: utf-8
"""Library with training routines of LightGBM."""
import collections
import copy
from operator import attrgetter
import numpy as np
from . import callback
from .basic import Booster, Dataset, LightGBMError, _ConfigAliases, _InnerPredictor, _log_warning
from .compat import SKLEARN_INSTALLED, _LGBMGroup... | mit |
adlyons/AWOT | awot/graph/radar_utility.py | 1 | 44337 | """
awot.graph.radar_utility
=========================
A group of scripts to create various radar utility plots.
"""
# Load the needed packages
from __future__ import print_function
import numpy as np
import matplotlib.pyplot as plt
from netCDF4 import date2num, num2date
from scipy.stats import mstats
from matplotli... | gpl-2.0 |
TAMU-CPT/galaxy-tools | tools/helicalWheel/plotWheels/core.py | 1 | 69812 | # -*- coding: utf-8 -*-
"""
.. currentmodule:: modlamp.core
.. moduleauthor:: modlab Alex Mueller ETH Zurich <alex.mueller@pharma.ethz.ch>
Core helper functions and classes for other modules. The two main classes are:
============================= ==================================================================... | gpl-3.0 |
jenfly/atmos-tools | atmos/data.py | 1 | 62848 | """
Utility functions for atmospheric data wrangling / preparation.
- ndarrays
- netCDF files
- Lat-lon geophysical data
- Pressure level data and topography
"""
from __future__ import division
import numpy as np
import pandas as pd
import collections
import scipy.interpolate as interp
from mpl_toolkits import basema... | mit |
dricciardelli/vae2vec | capt_gen_o2e_aux_ms.py | 1 | 39724 | # -*- coding: utf-8 -*-
import math
import os
import tensorflow as tf
import numpy as np
import pandas as pd
import pickle
import pickle as pkl
import cv2
import skimage
import random
import tensorflow.python.platform
from tensorflow.python.ops import rnn
from keras.preprocessing import sequence
from collections import... | mit |
mabl/gdsCAD | gdsCAD/core.py | 1 | 67436 | # -*- coding: utf-8 -*-
"""
The primary geometry elements, layout and organization classes.
The objects found here are intended to correspond directly to elements found in
the GDSII specification.
The fundamental gdsCAD object is the Layout, which contains all the information
to be sent to the mask shop. A Layout can... | gpl-3.0 |
CompPhysics/MachineLearning | doc/LectureNotes/_build/jupyter_execute/chapter3.py | 1 | 32318 | # Ridge and Lasso Regression
[Video of Lecture](https://www.uio.no/studier/emner/matnat/fys/FYS-STK4155/h20/forelesningsvideoer/LectureSeptember10.mp4?vrtx=view-as-webpage)
## The singular value decomposition
The examples we have looked at so far are cases where we normally can
invert the matrix $\boldsymbol{X}^T\b... | cc0-1.0 |
TheBrane/sodi-data-acquisition | NASA Web Of Sciences/nasa_iss_combined_final.py | 1 | 120381 | '''
Kaushik Tandon
January - February 2020
NASA Web Of Science + ISS conversion for The Brane
'''
import json
import csv
import numpy as np
import pandas as pd
import requests
import inflection as inf
from collections import OrderedDict
from nltk.corpus import wordnet as wn
import nltk
import warnings
nltk.download... | mit |
pvlib/pvlib-python | pvlib/clearsky.py | 1 | 38543 | """
The ``clearsky`` module contains several methods
to calculate clear sky GHI, DNI, and DHI.
"""
import os
from collections import OrderedDict
import calendar
import numpy as np
import pandas as pd
from scipy.optimize import minimize_scalar
from scipy.linalg import hankel
from pvlib import atmosphere, tools
def ... | bsd-3-clause |
pratapvardhan/pandas | pandas/core/generic.py | 1 | 339236 | # pylint: disable=W0231,E1101
import collections
import functools
import warnings
import operator
import weakref
import gc
import json
import numpy as np
import pandas as pd
from pandas._libs import tslib, properties
from pandas.core.dtypes.common import (
_ensure_int64,
_ensure_object,
is_scalar,
is_... | bsd-3-clause |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/pandas/core/generic.py | 1 | 129838 | # pylint: disable=W0231,E1101
import warnings
import operator
import weakref
import gc
import numpy as np
import pandas.lib as lib
import pandas as pd
from pandas.core.base import PandasObject
from pandas.core.index import (Index, MultiIndex, _ensure_index,
InvalidIndexError)
import pand... | gpl-3.0 |
neeraj-kumar/nkpylib | nkimageutils.py | 1 | 67786 | """Lots of useful image utilities, written by Neeraj Kumar.
Licensed under the 3-clause BSD License:
Copyright (c) 2010-2013, Neeraj Kumar (neerajkumar.org)
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are m... | bsd-3-clause |
Ziqi-Li/bknqgis | pandas/pandas/tests/series/test_operators.py | 1 | 70468 | # coding=utf-8
# pylint: disable-msg=E1101,W0612
import pytest
import pytz
from collections import Iterable
from datetime import datetime, timedelta
import operator
from itertools import product, starmap
from numpy import nan, inf
import numpy as np
import pandas as pd
from pandas import (Index, Series, DataFrame, ... | gpl-2.0 |
UMN-Hydro/GSFLOW_pre-processor | python_scripts/GSFLOW_print_PRMSparamfile.py | 1 | 44346 | # -*- coding: utf-8 -*-
"""
Created on Tue Sep 12 22:21:56 2017
Based on: GSFLOW_print_PRMSparamfile4.m
@author: gcng
"""
import numpy as np # matlab core
import scipy as sp # matlab toolboxes
import matplotlib.pyplot as plt # matlab-like plots
import os # os functions
import pandas as pd # for data structures and r... | gpl-3.0 |
jaeilepp/eggie | mne/surface.py | 1 | 47507 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis A. Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
from .externals.six import string_types
import os
from os import path as op
import sys
from struct import pac... | bsd-2-clause |
darogan/ParticleStats | ParticleStats/ParticleStats_Plots.py | 1 | 98276 | #!/usr/bin/env python
###############################################################################
# ____ _ _ _ ____ _ _ #
# | _ \ __ _ _ __| |_(_) ___| | ___/ ___|| |_ __ _| |_ ___ #
# | |_) / _` | '__| __| |/ __| |/ _ \___ \| __/ _` |... | gpl-3.0 |
PmagPy/PmagPy | pmagpy/pmagplotlib.py | 1 | 132128 | # /usr/bin/env pythonw
# pylint: skip-file
# pylint: disable-all
# causes too many errors and crashes
import os
import sys
import warnings
from past.utils import old_div
import numpy as np
import pandas as pd
warnings.filterwarnings("ignore") # what you don't know won't hurt you
from distutils.version import LooseV... | bsd-3-clause |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/pandas/io/tests/test_parsers.py | 1 | 105662 | # -*- coding: utf-8 -*-
# pylint: disable=E1101
from datetime import datetime
import csv
import os
import sys
import re
import nose
import platform
from numpy import nan
import numpy as np
from pandas.io.common import DtypeWarning
from pandas import DataFrame, Series, Index, MultiIndex, DatetimeIndex
from pandas.com... | gpl-3.0 |
ThomasBrouwer/BNMTF | experiments/experiments_gdsc/convergence/nmf_gibbs.py | 1 | 61791 | """
Run NMF Gibbs on the Sanger dataset.
We can plot the MSE, R2 and Rp as it converges, on the entire dataset.
We give flat priors (1/10).
"""
import sys, os
project_location = os.path.dirname(__file__)+"/../../../../"
sys.path.append(project_location)
from BNMTF.code.models.bnmf_gibbs_optimised import bnmf_gibbs_... | apache-2.0 |
GuessWhoSamFoo/pandas | pandas/tests/indexes/test_base.py | 1 | 101609 | # -*- coding: utf-8 -*-
from collections import defaultdict
from datetime import datetime, timedelta
import math
import operator
import sys
import numpy as np
import pytest
from pandas._libs.tslib import Timestamp
from pandas.compat import (
PY3, PY35, PY36, StringIO, lrange, lzip, range, text_type, u, zip)
from... | bsd-3-clause |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_load2-new10fold_11_10_2014_server.py | 1 | 41826 |
# coding: utf-8
# In[3]:
import sys, os
sys.path.append('../../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import numpy as np
import csv
from dateutil import parser
from datetime import timedelta
from sklearn import svm
import numpy ... | gpl-2.0 |
niamiot/RGPA | Scenario_base.py | 1 | 47011 | # -*- coding:Utf-8 -*-
#####################################################################
#This file is part of RGPA.
#Foobar is free software: you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation, either version 3 of the License, ... | gpl-3.0 |
bdh1011/wau | venv/lib/python2.7/site-packages/pandas/tests/test_multilevel.py | 1 | 87291 | # -*- coding: utf-8 -*-
# pylint: disable-msg=W0612,E1101,W0141
import datetime
import itertools
import nose
from numpy.random import randn
import numpy as np
from pandas.core.index import Index, MultiIndex
from pandas import Panel, DataFrame, Series, notnull, isnull, Timestamp
from pandas.util.testing import (asser... | mit |
nicproulx/mne-python | mne/decoding/time_gen.py | 2 | 65441 | # Authors: Jean-Remi King <jeanremi.king@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Clement Moutard <clement.moutard@gmail.com>
#
# License: BSD (3-clause)
import numpy as np
import copy
from .base import _set_cv
f... | bsd-3-clause |
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