repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
nisse3000/pymatgen | pymatgen/io/lammps/data.py | 1 | 49211 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, print_function, unicode_literals, \
absolute_import
from collections import OrderedDict
from io import StringIO
import itertools
import re
import warnings
import numpy as ... | mit |
tgsmith61591/skutil | skutil/utils/util.py | 1 | 34518 | # -*- coding: utf-8 -*-
from __future__ import print_function, division, absolute_import
import warnings
import sys
import traceback
import numpy as np
import pandas as pd
import numbers
import scipy.stats as st
from sklearn.datasets import load_iris, load_breast_cancer, load_boston
from sklearn.externals import six
f... | bsd-3-clause |
DFO-Ocean-Navigator/Ocean-Data-Map-Project | routes/api_v1_0.py | 1 | 42499 | import base64
import datetime
import gzip
import json
import os
import shutil
import sqlite3
from io import BytesIO
import data.class4 as class4
import data.observational.queries as ob_queries
import geojson
import numpy as np
import pandas as pd
import plotting.colormap
import plotting.scale
import plotting.tile
impo... | gpl-3.0 |
volodymyrss/3ML | threeML/minimizer/minimization.py | 1 | 38700 | import collections
import math
import numpy as np
import pandas as pd
import scipy.optimize
from threeML.io.progress_bar import progress_bar
from threeML.exceptions.custom_exceptions import custom_warnings
from threeML.utils.differentiation import get_hessian, ParameterOnBoundary
# Set the warnings to be issued alway... | bsd-3-clause |
rs2/pandas | pandas/core/arrays/interval.py | 1 | 45756 | from operator import le, lt
import textwrap
import numpy as np
from pandas._config import get_option
from pandas._libs.interval import (
VALID_CLOSED,
Interval,
IntervalMixin,
intervals_to_interval_bounds,
)
from pandas.compat.numpy import function as nv
from pandas.util._decorators import Appender
... | bsd-3-clause |
samuelleblanc/fp | gui.py | 1 | 80825 | # gui codes to use in coordination with moving_lines software
# Copyright 2015 Samuel LeBlanc
import tkSimpleDialog
import Tkinter as Tk
from matplotlib.backends.backend_tkagg import NavigationToolbar2TkAgg, ToolTip
from matplotlib.backend_bases import Event
class gui:
"""
Purpose:
Class that contains ... | gpl-3.0 |
qbuat/rootpy | rootpy/plotting/base.py | 1 | 36416 | # Copyright 2012 the rootpy developers
# distributed under the terms of the GNU General Public License
"""
This module contains base classes defining core funcionality
"""
from __future__ import absolute_import
from functools import wraps
import warnings
import ROOT
from .. import asrootpy
from ..decorators import c... | gpl-3.0 |
ndingwall/scikit-learn | sklearn/multiclass.py | 1 | 35400 | """
Multiclass classification strategies
====================================
This module implements multiclass learning algorithms:
- one-vs-the-rest / one-vs-all
- one-vs-one
- error correcting output codes
The estimators provided in this module are meta-estimators: they require a base
estimator to be p... | bsd-3-clause |
dialounke/pylayers | pylayers/mobility/ban/body.py | 1 | 97413 | # -*- coding:Utf-8 -*-
"""
Body Class
===========
This class implements the body model
.. autoclass:: Body
:members:
Cylinder Class
==============
.. autoclass:: Cylinder
:members:
"""
#import mayavi.mlab as mlab
import numpy as np
import scipy.stats as sp
import ConfigParser
import os
import copy
from p... | mit |
Captain-Coder/tribler | TriblerGUI/debug_window.py | 1 | 32589 | from __future__ import absolute_import
import datetime
import os
import socket
from time import localtime, strftime
import matplotlib
import psutil
from meliae import scanner
matplotlib.use('Qt5Agg')
from matplotlib.backends.backend_qt5agg import FigureCanvas
from matplotlib.dates import DateFormatter
from matplotli... | lgpl-3.0 |
chrinide/hep_ml | hep_ml/losses.py | 1 | 38273 | """
**hep_ml.losses** contains different loss functions to use in gradient boosting.
Apart from standard classification losses, **hep_ml** contains losses for uniform classification
(see :class:`BinFlatnessLossFunction`, :class:`KnnFlatnessLossFunction`, :class:`KnnAdaLossFunction`)
and for ranking (see :class:`RankBo... | apache-2.0 |
choderalab/ExpressionExplorer | scripts/select-PDB-constructs.py | 1 | 38630 | # For a set of target protein domains, aligns PDB sequences against the target
# protein sequence and a sequence from a chosen plasmid library. Ranks the PDB
# sequences based on variables such as similarity to the target domain
# sequence, and likely authenticity of the PDB construct sequence (given that
# there are f... | gpl-2.0 |
AlbanoCastroSousa/RESSPyLab | RESSPyLab/RESSPyLab.py | 1 | 31684 | # -*- coding: utf-8 -*-
"""@package RESSPyLab
Material model and solvers for the original Voce-Chaboche model.
"""
import numpy as np
import pandas as pd
import codecs
import numdifftools.nd_algopy as nda
def VCsimCurve(x_sol, testClean):
sy_0 = x_sol[1] * 1.0
E = x_sol[0] * 1.0
Q = x_sol[2] * 1.0
b =... | mit |
yavalvas/yav_com | build/matplotlib/lib/matplotlib/colorbar.py | 1 | 49309 | '''
Colorbar toolkit with two classes and a function:
:class:`ColorbarBase`
the base class with full colorbar drawing functionality.
It can be used as-is to make a colorbar for a given colormap;
a mappable object (e.g., image) is not needed.
:class:`Colorbar`
the derived class ... | mit |
jmtyszka/atlaskit | atlas_report.py | 1 | 30700 | #!/usr/bin/env python3
"""
Create a report of intra and inter-observer atlas label statistics
- requires that atlas.py has been run previously on the labels directory
- generates HTML report pages in subdirectory of atlas directory
Usage
----
atlas_report.py -a <atlas directory created by atlas.py>
atlas_report.py -h
... | gpl-3.0 |
ifuding/Kaggle | Instacart/Code/fd_keras.py | 1 | 34543 | # Author : Ding Fu & Paul-Antoine Nguyen
# This script considers all the products a user has ordered
#
# We train a model computing the probability of reorder on the "train" data
#
# For the submission, we keep the orders that have a probability of
# reorder higher than a threshold
import tempfile
import numpy as np... | apache-2.0 |
danfeldman90/EDGE | EDGE.py | 1 | 135628 | #!/usr/bin/env python
# Created by Dan Feldman and Connor Robinson for analyzing data from Espaillat Group research models.
# Last updated: 7/11/16 by Dan
#---------------------------------------------IMPORT RELEVANT MODULES--------------------------------------------
import numpy as np
import matplotlib.pyplot as plt... | mit |
neherlab/treetime | treetime/clock_tree.py | 1 | 44115 | from __future__ import print_function, division, absolute_import
import numpy as np
from . import config as ttconf
from . import MissingDataError
from .treeanc import TreeAnc
from .utils import numeric_date, DateConversion, datestring_from_numeric
from .distribution import Distribution
from .branch_len_interpolator imp... | mit |
rsmailach/SRPT | ClassBased_SingleServer_LoadPerClass.py | 1 | 43853 | #----------------------------------------------------------------------#
# ApproxSRPTE.py
#
# This application simulates a single server with Poisson arrivals
# and processing times of a general distribution. There are errors in
# time estimates within a range. Arrivals are assigned to SRPT classes
# using the methods ... | mit |
Titan-C/sphinx-gallery | sphinx_gallery/tests/test_full.py | 1 | 34837 | # -*- coding: utf-8 -*-
# Author: Óscar Nájera
# License: 3-clause BSD
"""
Test the SG pipeline used with Sphinx
"""
from __future__ import division, absolute_import, print_function
import codecs
from io import StringIO
import os
import os.path as op
import re
import shutil
import sys
import time
import numpy as np
f... | bsd-3-clause |
peckhams/topoflow | topoflow/components/topoflow_driver.py | 1 | 73597 |
## Copyright (c) 2001-2017, Scott D. Peckham
##
## Jan 2013. Revised handling of input/output names.
##
## Oct 2012. CSDMS Standard Names and BMI.
##
## May 2012. Q_outlet -> Q_outlet[0] (5/19/12)
##
## May 2010. Changes to initialize() and read_cfg_file()
##
## Feb 2010. Channels comp. now calls dp.update() itself.... | mit |
roryk/umis | umis/umis.py | 1 | 47603 | #!/usr/bin/env python
from __future__ import print_function
import os
import itertools
import collections
import regex as re
import json
import gzip
import sys
import logging
import time
import multiprocessing
import tempfile
from io import BufferedReader
from functools import partial
import toolz as tz
from .barcod... | mit |
uber/ludwig | tests/integration_tests/test_visualization_api.py | 1 | 35113 | # -*- coding: utf-8 -*-
# Copyright (c) 2019 Uber Technologies, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | apache-2.0 |
jseabold/statsmodels | statsmodels/tsa/statespace/sarimax.py | 1 | 83867 | """
SARIMAX Model
Author: Chad Fulton
License: Simplified-BSD
"""
from warnings import warn
import numpy as np
import pandas as pd
from statsmodels.compat.pandas import Appender
from statsmodels.tools.tools import Bunch
from statsmodels.tools.data import _is_using_pandas
from statsmodels.tools.decorators import cac... | bsd-3-clause |
poojavade/Genomics_Docker | Dockerfiles/gedlab-khmer-filter-abund/pymodules/python2.7/lib/python/scipy/interpolate/interpolate.py | 2 | 84928 | """ Classes for interpolating values.
"""
from __future__ import division, print_function, absolute_import
import itertools
from numpy import (shape, sometrue, array, transpose, searchsorted,
ones, logical_or, atleast_1d, atleast_2d, ravel,
dot, poly1d, asarray, intp)
import nump... | apache-2.0 |
ARudiuk/mne-python | mne/viz/topomap.py | 1 | 79917 | """Functions to plot M/EEG data e.g. topographies
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com... | bsd-3-clause |
desihub/desisim | py/desisim/templates.py | 1 | 144638 | """
desisim.templates
=================
Functions to simulate spectral templates for DESI.
"""
from __future__ import division, print_function
import os
import sys
import numpy as np
import multiprocessing
from desiutil.log import get_logger, DEBUG
from desisim.io import empty_metatable
try:
from scipy import c... | bsd-3-clause |
plotly/python-api | packages/python/plotly/plotly/graph_objs/layout/coloraxis/_colorbar.py | 1 | 69700 | from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class ColorBar(_BaseLayoutHierarchyType):
# class properties
# --------------------
_parent_path_str = "layout.coloraxis"
_path_str = "layout.coloraxis.colorbar"
_valid_props = {
"bgc... | mit |
pivotalsoftware/pymadlib | pymadlib/pymadlib.py | 1 | 37354 | '''
Python wrapper for MADlib
vatsan.cs@utexas.edu, 3 Jan 2013
This currently implements the following algorithms of MADlib 0.5:
1) Linear regression (+ can also accept categorical columns as features)
2) Logistic Regression (+ can also accept categorical columns as features)
3) ... | bsd-2-clause |
cnerger/wnd-charm | wndcharm/FeatureSpace.py | 1 | 96521 | """
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Copyright (C) 2015 National Institutes of Health
This library is free software; you can redistribute it and/or
modify it under the ... | lgpl-2.1 |
houseind/robothon | GlyphProofer/dist/GlyphProofer.app/Contents/Resources/lib/python2.6/numpy/lib/polynomial.py | 1 | 30502 | """
Functions to operate on polynomials.
"""
__all__ = ['poly', 'roots', 'polyint', 'polyder', 'polyadd',
'polysub', 'polymul', 'polydiv', 'polyval', 'poly1d',
'polyfit', 'RankWarning']
import re
import warnings
import numpy.core.numeric as NX
from numpy.core import isscalar, abs
from numpy.lib... | mit |
Eric89GXL/scipy | scipy/stats/morestats.py | 3 | 106197 | from __future__ import division, print_function, absolute_import
import math
import warnings
from collections import namedtuple
import numpy as np
from numpy import (isscalar, r_, log, around, unique, asarray,
zeros, arange, sort, amin, amax, any, atleast_1d,
sqrt, ceil, floor, a... | bsd-3-clause |
dimkal/mne-python | mne/viz/epochs.py | 1 | 66862 | """Functions to plot epochs data
"""
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# Jaakko Leppakangas <jaeilepp@student.jyu.f... | bsd-3-clause |
pkariz/nnsearch | nnsearch/algos/rtree.py | 1 | 32590 | from heapq import heappop, heappush, heapify #storing k-nn
import random #random testi
import matplotlib.pyplot as plt
import matplotlib.patches as mpatches
from utils.nodes import Inner, Leaf
from utils.rectangle import Rect
from utils.entry import Entry
import cPickle
def mink2(x, y, p):
"""
Returns minkows... | gpl-3.0 |
krischer/LASIF | lasif/scripts/lasif_cli.py | 1 | 57756 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
The main LASIF console script.
It is important to import necessary things at the method level to make
importing this file as fast as possible. Otherwise using the command line
interface feels sluggish and slow.
All functions starting with "lasif_" will automatically ... | gpl-3.0 |
Ajapaik/ajapaik-web | ajapaik/ajapaik/models.py | 1 | 85430 | import os
from contextlib import closing
from copy import deepcopy
from datetime import datetime
from io import StringIO
from json import loads
from math import degrees
from time import sleep
from urllib.request import urlopen
import numpy
import requests
from PIL import Image, ImageOps
from bulk_update.manager import... | gpl-3.0 |
GuessWhoSamFoo/pandas | pandas/tests/test_window.py | 1 | 156476 | from collections import OrderedDict
from datetime import datetime, timedelta
from itertools import product
import warnings
from warnings import catch_warnings
import numpy as np
from numpy.random import randn
import pytest
from pandas.compat import range, zip
from pandas.errors import UnsupportedFunctionCall
import p... | bsd-3-clause |
ryandougherty/mwa-capstone | MWA_Tools/build/matplotlib/lib/matplotlib/colors.py | 1 | 44182 | """
A module for converting numbers or color arguments to *RGB* or *RGBA*
*RGB* and *RGBA* are sequences of, respectively, 3 or 4 floats in the
range 0-1.
This module includes functions and classes for color specification
conversions, and for mapping numbers to colors in a 1-D array of
colors called a colormap. Color... | gpl-2.0 |
hrichstein/Stellar_mass_env_Density | Codes/Scripts/reference.py | 1 | 75204 | from __future__ import division, absolute_import
import astropy.stats
import glob
import math
import matplotlib.pyplot as plt
from matplotlib import ticker
from matplotlib.ticker import FormatStrFormatter
import numpy as np
import os
import pandas as pd
from scipy import optimize,spatial
###########################... | mit |
andreashorn/lead_dbs | ext_libs/OSS-DBS/OSS_platform/Electrode_files/St_Jude6173_floating_profile.py | 1 | 36216 | # -*- coding: utf-8 -*-
###
### This file is generated automatically by SALOME v8.3.0 with dump python functionality
###### Run with DPS_lead_position_V9.py
import sys
import salome
salome.salome_init()
theStudy = salome.myStudy
import salome_notebook
notebook = salome_notebook.NoteBook(theStudy)
###
### GEOM com... | gpl-3.0 |
ReservoirWebs/GrowChinook | Bioenergetics_dev.py | 1 | 46105 | #!/usr/bin/python
import pylab
import glob
import time
import os
import numpy as np
import sys
from scipy.interpolate import interp1d
from scipy.integrate import trapz
from scipy.optimize import minimize, brute
from csv import DictReader, QUOTE_NONNUMERIC
from collections import defaultdict
from matplotlib import pypl... | gpl-3.0 |
SiccarPoint/numpy | numpy/lib/npyio.py | 2 | 73744 | from __future__ import division, absolute_import, print_function
import sys
import os
import re
import itertools
import warnings
import weakref
from operator import itemgetter, index as opindex
import numpy as np
from . import format
from ._datasource import DataSource
from numpy.core.multiarray import packbits, unpa... | bsd-3-clause |
Winand/pandas | pandas/core/indexes/multi.py | 1 | 97612 |
# pylint: disable=E1101,E1103,W0232
import datetime
import warnings
from functools import partial
from sys import getsizeof
import numpy as np
from pandas._libs import index as libindex, lib, Timestamp
from pandas.compat import range, zip, lrange, lzip, map
from pandas.compat.numpy import function as nv
from pandas ... | bsd-3-clause |
badbytes/pymeg | gui/wx/PYMEG.py | 1 | 137317 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# generated by wxGlade 0.6.3 on Mon Sep 15 19:43:15 2008
import wx
import os
from matplotlib import use
use('WXAgg')
from pylab import *
from pdf2py import data,channel,listparse, pdf, readwrite, tapbuild, lA2array
from mri import img, viewmri, transform, mr2vtk, vtkview, ... | gpl-3.0 |
pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/indexes/multi.py | 1 | 78405 | # pylint: disable=E1101,E1103,W0232
import datetime
import warnings
from functools import partial
from sys import getsizeof
import numpy as np
import pandas.lib as lib
import pandas.index as _index
from pandas.lib import Timestamp
from pandas.compat import range, zip, lrange, lzip, map
from pandas import compat
from ... | gpl-2.0 |
milcent/Benford_py | benford/benford.py | 1 | 63925 | '''
Benford_py for Python is a module for application of Benford's Law
to a sequence of numbers.
Dependent on pandas, numpy and matplotlib
All logarithms ar in base 10: "np.log10"
Copyright (C) 2014 Marcel Milcent
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Ge... | gpl-3.0 |
jseabold/statsmodels | statsmodels/tsa/statespace/varmax.py | 4 | 50033 | # -*- coding: utf-8 -*-
"""
Vector Autoregressive Moving Average with eXogenous regressors model
Author: Chad Fulton
License: Simplified-BSD
"""
import contextlib
from warnings import warn
import pandas as pd
import numpy as np
from statsmodels.compat.pandas import Appender
from statsmodels.tools.tools import Bunch... | bsd-3-clause |
QuantumQuadrate/CsPyController | python/picampython.py | 1 | 43449 | """andor.py
Part of the AQuA Cesium Controller software package
author=Martin Lichtman
created=2014-07-28
modified>=2014-07-30
This code communicates with the Andor Luca camera. It can both get and set
the settings of the camera, and read images. Single shot and video modes are
supported.
T... | lgpl-3.0 |
jimmycallin/master-thesis | architectures/conll16st-hd-sdp/DiscourseSenseClassification_FeatureExtraction_v1.py | 1 | 42458 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Sample Discourse Relation Classifier Train
Train parser for suplementary evaluation
Train should take three arguments
$inputDataset = the folder of the dataset to parse.
The folder structure is the same as in the tar file
$inputDataset/parses.json
$inputDataset... | mit |
FedoraScientific/salome-paravis | src/PV_SWIG/paravisSM.py | 1 | 112492 | # Copyright (C) 2010-2014 CEA/DEN, EDF R&D
#
# This library is free software; you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later version.
#
# This library ... | lgpl-2.1 |
3324fr/spinalcordtoolbox | scripts/sct_straighten_spinalcord.py | 1 | 48464 | #!/usr/bin/env python
#
# This program takes as input an anatomic image and the centerline or segmentation of its spinal cord (that you can get
# using sct_get_centerline.py or sct_segmentation_propagation) and returns the anatomic image where the spinal
# cord was straightened.
#
# ------------------------------------... | mit |
WangWenjun559/Weiss | summary/sumy/sklearn/linear_model/least_angle.py | 1 | 49370 | """
Least Angle Regression algorithm. See the documentation on the
Generalized Linear Model for a complete discussion.
"""
from __future__ import print_function
# Author: Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux
#
# License: BSD 3 ... | apache-2.0 |
andycasey/snob | snob/mixture_search.py | 1 | 82543 |
"""
An estimator for modelling data from a mixture of Gaussians,
using an objective function based on minimum message length.
"""
__all__ = [
"GaussianMixture",
"kullback_leibler_for_multivariate_normals",
"responsibility_matrix",
"split_component", "merge_component", "delete_component",
]
import ... | mit |
mraspaud/dask | dask/array/core.py | 1 | 125859 | from __future__ import absolute_import, division, print_function
from bisect import bisect
from collections import Iterable, Mapping
from collections import Iterator
from functools import partial, wraps
import inspect
from itertools import product
from numbers import Integral, Number
import operator
from operator impo... | bsd-3-clause |
majetideepak/arrow | python/pyarrow/pandas_compat.py | 1 | 33582 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
CalebBell/ht | ht/conv_internal.py | 1 | 59534 | # -*- coding: utf-8 -*-
'''Chemical Engineering Design Library (ChEDL). Utilities for process modeling.
Copyright (C) 2016, 2017 Caleb Bell <Caleb.Andrew.Bell@gmail.com>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to... | mit |
matthew-brett/draft-statsmodels | scikits/statsmodels/sandbox/regression/mle.py | 1 | 51757 | '''general non-linear MLE for time series analysis
idea for general version
------------------------
subclass defines geterrors(parameters) besides loglike,...
and covariance matrix of parameter estimates (e.g. from hessian
or outerproduct of jacobian)
update: I don't really need geterrors directly, but get_h the con... | bsd-3-clause |
cbertinato/pandas | pandas/tseries/offsets.py | 1 | 83611 | from datetime import date, datetime, timedelta
import functools
import operator
from typing import Optional
from dateutil.easter import easter
import numpy as np
from pandas._libs.tslibs import (
NaT, OutOfBoundsDatetime, Timedelta, Timestamp, ccalendar, conversion,
delta_to_nanoseconds, frequencies as libfre... | bsd-3-clause |
magnunor/hyperspy | hyperspy/_signals/eds.py | 1 | 44437 | # -*- coding: utf-8 -*-
# Copyright 2007-2016 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | gpl-3.0 |
maxlikely/scikit-learn | sklearn/preprocessing.py | 1 | 41872 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# License: BSD
from collections import Sequence
import warnings
import numbers
import numpy as np
imp... | bsd-3-clause |
ssanderson/dask | dask/dataframe/tests/test_dataframe.py | 1 | 78803 | from itertools import product
from datetime import datetime
from operator import getitem
import pandas as pd
import pandas.util.testing as tm
import numpy as np
import pytest
import dask
from dask.async import get_sync
from dask.utils import raises, ignoring
import dask.dataframe as dd
from dask.dataframe.core import... | bsd-3-clause |
ecell/ecell4 | ecell4/plotting/_matplotlib.py | 1 | 36241 | import os
import types
import random
from ..util.session import load_world
from .styles import default_color_scale, matplotlib_color_scale
from ._core import get_range_of_world, get_range_of_trajectories, display_anim, eval_key
__all__ = [
"plot_number_observer_with_matplotlib",
"plot_world_with_matplotlib",
... | gpl-3.0 |
fumitoh/modelx | modelx/serialize/serializer_2.py | 1 | 41033 | # Copyright (c) 2017-2021 Fumito Hamamura <fumito.ham@gmail.com>
# This library is free software: you can redistribute it and/or
# modify it under the terms of the GNU Lesser General Public
# License as published by the Free Software Foundation version 3.
#
# This library is distributed in the hope that it will be use... | gpl-3.0 |
clipo/idss-seriation | seriation/IDSS.py | 1 | 124476 | #!/usr/bin/env python
# Copyright (c) 2013-2015. Carl P. Lipo <clipo@csulb.edu>
#
# This work is licensed under the terms of the Apache Software License, Version 2.0. See the file LICENSE for details.
__author__ = 'carllipo'
## NOTE the library base for this program is the anaconda distribution of python. There are ... | apache-2.0 |
srodney/hstsntools | hstsnphot.py | 1 | 45549 | #!/usr/bin/env python
# C.McCully, S.Rodney and B.Patel
#
"""
hstsnphot.py
Perform aperture photometry in Vega magnitudes an image or set of images.
Command-line operation for single-image, single-source photometry:
Syntax : hstsnphot.py [options] image [xcoord ycoord]
Options:
-h/--help : print this help
-v ... | mit |
kevin-intel/scikit-learn | sklearn/ensemble/_weight_boosting.py | 2 | 43340 | """Weight Boosting.
This module contains weight boosting estimators for both classification and
regression.
The module structure is the following:
- The `BaseWeightBoosting` base class implements a common ``fit`` method
for all the estimators in the module. Regression and classification
only differ from each oth... | bsd-3-clause |
datapythonista/pandas | pandas/io/html.py | 2 | 34556 | """
:mod:`pandas.io.html` is a module containing functionality for dealing with
HTML IO.
"""
from __future__ import annotations
from collections import abc
import numbers
import os
import re
from typing import (
Pattern,
Sequence,
)
from pandas._typing import FilePathOrBuffer
from pandas.compat._optional im... | bsd-3-clause |
erdc-cm/tethysapp-streamflow_prediction_tool | tethysapp/streamflow_prediction_tool/controllers_ajax.py | 1 | 61469 | # -*- coding: utf-8 -*-
"""controllers_ajax.py
Created by Alan D. Snow, Curtis Rae, Shawn Crawley 2015.
License: BSD 3-Clause
"""
from csv import writer as csv_writer
import datetime
from json import load as json_load
import os
import numpy as np
import pandas as pd
import plotly.graph_objs as go
import scipy... | bsd-3-clause |
szhem/spark | python/pyspark/sql/tests.py | 2 | 232229 | # -*- encoding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the ... | apache-2.0 |
BIDS-Apps/freesurfer | run.py | 1 | 31420 | #!/usr/bin/env python3
import argparse
import os
import shutil
import nibabel
from glob import glob
from subprocess import Popen, PIPE
from shutil import rmtree
import subprocess
from warnings import warn
import pandas as pd
import re
import errno
def run(command, env={}, ignore_errors=False):
merged_env = os.envi... | apache-2.0 |
whiteshield/EHScripter | EHScripter/app.py | 1 | 52085 | ##!/usr/bin/env python3
# -*- coding: utf-8 -*-
import tkinter
from tkinter import *
from tkinter.ttk import *
from tkinter import filedialog, messagebox, simpledialog
import re, os, platform
import time
import yaml
import imp
from .config import DefaultConfig
from .nessus import NessusToMarkdown
from .burp import Bur... | gpl-2.0 |
Fernerkundung/sentinelsat | sentinelsat/sentinel.py | 1 | 57743 | # -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function
import concurrent.futures
import hashlib
import itertools
import logging
import re
import shutil
import threading
import warnings
import xml.etree.ElementTree as ET
from collections import OrderedDict, defaultdict
from contextlib ... | gpl-3.0 |
kkozarev/mwacme | MS_Inspect_menu_version/ms_inspect.py | 1 | 37360 | import matplotlib
matplotlib.use('TkAgg')
import matplotlib.pyplot as plt
import numpy as np
import time
from functools import partial
from matplotlib.backends.backend_tkagg import FigureCanvasTkAgg, \
NavigationToolbar2TkAgg
from matplotlib.figure import Figure
import matp... | gpl-2.0 |
vortex-ape/scikit-learn | sklearn/preprocessing/data.py | 4 | 106915 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Eric Martin <eric@ericmart.in>
# Giorgio Patrini <giorgio.patrini@anu.edu.au>
# ... | bsd-3-clause |
Eric89GXL/PySurfer | surfer/viz.py | 1 | 143648 | from copy import deepcopy
import logging
from math import floor
import os
from os.path import join as pjoin
import warnings
from warnings import warn
import numpy as np
import nibabel as nib
from mayavi import mlab
from mayavi.tools.mlab_scene_model import MlabSceneModel
from mayavi.core import lut_manager
from maya... | bsd-3-clause |
rs2/bokeh | bokeh/core/properties.py | 1 | 69569 | ''' Properties are objects that can be assigned as class attributes on Bokeh
models, to provide automatic serialization, validation, and documentation.
This documentation is broken down into the following sections:
.. contents::
:local:
Overview
--------
There are many property types defined in the module, for ... | bsd-3-clause |
the872/pyglmnet | pyglmnet/pyglmnet.py | 1 | 36667 | """Python implementation of elastic-net regularized GLMs."""
from copy import deepcopy
import numpy as np
from scipy.special import expit
from scipy.stats import norm
from .utils import logger, set_log_level
from .base import BaseEstimator, is_classifier, check_version
def _lmb(distr, beta0, beta, X, eta):
"""C... | mit |
toobaz/pandas | pandas/tests/test_algos.py | 1 | 77523 | from datetime import datetime
from itertools import permutations
import struct
import numpy as np
from numpy import nan
from numpy.random import RandomState
import pytest
from pandas._libs import algos as libalgos, groupby as libgroupby, hashtable as ht
from pandas.compat.numpy import np_array_datetime64_compat
impor... | bsd-3-clause |
njwilson23/scipy | scipy/cluster/tests/test_hierarchy.py | 1 | 36256 | #! /usr/bin/env python
#
# Author: Damian Eads
# Date: April 17, 2008
#
# Copyright (C) 2008 Damian Eads
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# 1. Redistributions of source code must retain the above copy... | bsd-3-clause |
cbertinato/pandas | pandas/io/formats/style.py | 1 | 46789 | """
Module for applying conditional formatting to
DataFrames and Series.
"""
from collections import defaultdict
from contextlib import contextmanager
import copy
from functools import partial
from itertools import product
from uuid import uuid1
import numpy as np
from pandas._config import get_option
from pandas.c... | bsd-3-clause |
mlperf/training_results_v0.7 | Fujitsu/benchmarks/resnet/implementations/implementation_open/mxnet/python/mxnet/numpy/multiarray.py | 1 | 242310 | #!/usr/bin/env python
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "L... | apache-2.0 |
wxiang7/airflow | airflow/www/views.py | 1 | 81111 | # -*- coding: utf-8 -*-
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
... | apache-2.0 |
PascalSteger/gravimage | programs/plotting/gi_collection_disk.py | 1 | 34380 | #!/usr/bin/env python3
## @file
# collect profiles and perform actions on them
# (c) 2014 ETHZ Pascal Steger, psteger@phys.ethz.ch
import numpy as np
import numpy.random as npr
import pdb
import matplotlib.pyplot as plt
plt.ioff()
from gl_class_profiles import Profiles
import gl_output as go
import gl_helper as gh... | gpl-2.0 |
kevin-intel/scikit-learn | sklearn/multiclass.py | 2 | 37115 | """
Multiclass classification strategies
====================================
This module implements multiclass learning algorithms:
- one-vs-the-rest / one-vs-all
- one-vs-one
- error correcting output codes
The estimators provided in this module are meta-estimators: they require a base
estimator to be p... | bsd-3-clause |
eubr-bigsea/tahiti | migrations/versions/4b5b8e3470af_update_sklearn_operations.py | 1 | 38032 | # -*- coding: utf-8 -*-
"""Adding distinct sklearn operations
Revision ID: 4b5b8e3470af
Revises: 49be2ac6780f
Create Date: 2018-08-26 10:42:09.555626
"""
from alembic import context
from alembic import op
from sqlalchemy import String, Integer, Text
from sqlalchemy.orm import sessionmaker
from sqlalchemy.sql import ... | apache-2.0 |
henry-ngo/VIP | vip_hci/preproc/recentering.py | 1 | 49305 | #! /usr/bin/env python
"""
Module containing functions for cubes frame registration.
"""
from __future__ import division
from __future__ import print_function
__author__ = 'C. Gomez @ ULg, V. Christiaens @ ULg/UChile, G. Ruane'
__all__ = ['frame_shift',
'frame_center_radon',
'frame_center_satsp... | mit |
clemkoa/scikit-learn | sklearn/manifold/t_sne.py | 3 | 35319 | # Author: Alexander Fabisch -- <afabisch@informatik.uni-bremen.de>
# Author: Christopher Moody <chrisemoody@gmail.com>
# Author: Nick Travers <nickt@squareup.com>
# License: BSD 3 clause (C) 2014
# This is the exact and Barnes-Hut t-SNE implementation. There are other
# modifications of the algorithm:
# * Fast Optimi... | bsd-3-clause |
jakereimer/pipeline | python/pipeline/pupil.py | 1 | 65795 | """
This module is for pupil related tables and computation.
Current version is at 1.0.0 as of 10/29/2019
What's changed in this version:
1. Got rid of filter_config table
2. Added a functionality of removing tracking directory and its sub-directories if the job was not done completely
3. Method name changed from DLC_... | lgpl-3.0 |
chrisburr/scikit-learn | sklearn/metrics/tests/test_classification.py | 1 | 50887 | from __future__ import division, print_function
import numpy as np
from scipy import linalg
from functools import partial
from itertools import product
import warnings
from sklearn import datasets
from sklearn import svm
from sklearn.datasets import make_multilabel_classification
from sklearn.preprocessing import la... | bsd-3-clause |
apdavison/elephant | elephant/test/test_pandas_bridge.py | 1 | 113867 | # -*- coding: utf-8 -*-
"""
Unit tests for the pandas bridge module.
:copyright: Copyright 2014-2016 by the Elephant team, see `doc/authors.rst`.
:license: Modified BSD, see LICENSE.txt for details.
"""
from __future__ import division, print_function
import unittest
import warnings
from distutils.version import Stri... | bsd-3-clause |
jcornford/pyecog | pyecog/ndf/datahandler.py | 1 | 32297 | # -*- coding: utf-8 -*-
import sys
import os
import multiprocessing
import shutil
import traceback
import time
import logging
import h5py
import numpy as np
import pandas as pd
from scipy import signal, stats
from .ndfconverter import NdfFile
from .h5loader import H5File
from .feature_extractor import FeatureExtracto... | mit |
mikemoorester/ESM | nadir.py | 1 | 82016 | #!/usr/bin/env python
from __future__ import division, print_function, absolute_import
#import matplotlib
#matplotlib.use('Agg')
import numpy as np
import re
import calendar
import os, sys
import datetime as dt
import pickle
import multiprocessing
import antenna as ant
import residuals as res
import gpsTime as gt
i... | mit |
rubydatasystems/seniority_list | seniority_list/matplotlib_charting.py | 1 | 305236 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
# seniority_list is an analytical tool used when seniority-based work
# groups merge. It brings modern data science to the area of labor
# integration, utilizing the powerful data analysis capabilities of Python
# scientific computing.
# Copyright (C) 2016-2017 Robert E... | gpl-3.0 |
CospanDesign/python | opencv/klt.py | 1 | 39515 | #! /usr/bin/env python
# Copyright (c) 2017 Dave McCoy (dave.mccoy@cospandesign.com)
#
# NAME is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# any later version.
#
# NAME ... | mit |
smaegol/LINE_1_RACE_seq_analysis | analyze_race_seq.py | 1 | 66937 | #!/usr/bin/env python
#######################################################################################
### ###
### Copyright (C) 2017 Pawel Krawczyk (p.krawczyk@ibb.waw.pl) ###
### ... | gpl-3.0 |
magic2du/contact_matrix | Contact_maps/mnist_psuedo_ipython_dl_ppi/code/DL_Stacked_Model_Mnist_Psuedo_05_19_2015.py | 1 | 39571 |
# coding: utf-8
# In[1]:
# this part imports libs and load data from csv file
import sys
sys.path.append('../../../libs/')
import csv
from dateutil import parser
from datetime import timedelta
from sklearn import svm
import numpy as np
#import pandas as pd
import pickle
from sklearn.cross_validation import train_tes... | gpl-2.0 |
hobson/pug-nlp | pug/nlp/util.py | 1 | 112872 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
'''Utilities for Natural Language Processing (NLP):
* Vocabulary and dimension reduction
* Word statistics calculation
* Add a timezone to a datetime
* Slice a django queryset
* Genereate batches from a long list or sequence
* Inverse dict/hashtable lookup
* Generate a val... | mit |
demisto/content | Packs/Base/Scripts/DBotMLFetchData/DBotMLFetchData.py | 1 | 40573 | import uuid
from itertools import combinations
import dateutil
import demistomock as demisto
from CommonServerPython import *
from CommonServerUserPython import *
import json
import pickle
import re
from nltk.tokenize import word_tokenize, sent_tokenize
import string
from bs4 import BeautifulSoup
from collections imp... | mit |
thunderhoser/GewitterGefahr | gewittergefahr/gg_utils/feature_selection.py | 1 | 67199 | """Implements various feature-selection algorithms.
--- REFERENCES ---
Lakshmanan, V., C. Karstens, J. Krause, K. Elmore, A. Ryzhkov, and S. Berkseth,
2015: "Which polarimetric variables are important for weather/no-weather
discrimination?" Journal of Atmospheric and Oceanic Technology, 32 (6),
1209-1223.... | mit |
DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/sklearn/metrics/classification.py | 1 | 69318 | """Metrics to assess performance on classification task given class prediction
Functions named as ``*_score`` return a scalar value to maximize: the higher
the better
Function named as ``*_error`` or ``*_loss`` return a scalar value to minimize:
the lower the better
"""
# Authors: Alexandre Gramfort <alexandre.gramf... | mit |
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