repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
LeeKamentsky/CellProfiler | cellprofiler/gui/viewworkspace.py | 1 | 37483 | """ViewWorkspace.py - view the image sets and object sets in a workspace
CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.
Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2015 Broad Institute
All rights reserved.
Please s... | gpl-2.0 |
tkcroat/Augerquant | Modules/Auger_quantmap_functions.py | 1 | 163314 | # -*- coding: utf-8 -*-
"""
Created on Fri Dec 2 17:10:19 2016
@author: tkc
"""
import pandas as pd
import numpy as np
import shutil, sys, fileinput, os, math, re
import matplotlib.pyplot as plt
import struct
from PIL import Image, ImageDraw, ImageFont # needed for jpg creation
from matplotlib.backend... | mit |
runt18/nupic | external/linux32/lib/python2.6/site-packages/matplotlib/dates.py | 1 | 33997 | #!/usr/bin/env python
"""
Matplotlib provides sophisticated date plotting capabilities, standing
on the shoulders of python :mod:`datetime`, the add-on modules
:mod:`pytz` and :mod:`dateutils`. :class:`datetime` objects are
converted to floating point numbers which represent the number of days
since 0001-01-01 UTC. T... | agpl-3.0 |
cokelaer/msdas | src/msdas/readers.py | 1 | 56969 | # -*- python -*-
#
# This file is part of MS-DAS software
#
# Copyright (c) 2014 - EBI-EMBL
#
# File author(s): Thomas Cokelaer <cokelaer@ebi.ac.uk>, Marti Bernardo Faura
# bernardo@ebi.ac.uk
#
# Distributed under the GPLv3 License.
# See accompanying file LICENSE.txt or copy at
# http://www.gnu.org/licenses... | gpl-3.0 |
manterd/myPhyloDB | functions/analysis/norm_graphs.py | 1 | 46683 | import datetime
from django.http import HttpResponse
from django_pandas.io import read_frame
import json
import logging
from numpy import *
import numpy as np
from numpy.random.mtrand import RandomState
import pandas as pd
import pickle
from pyper import *
import zipfile
import psutil
from database.models import Sampl... | gpl-3.0 |
shendric/pyoval | lib/pyoval.py | 1 | 55452 | # -*- coding: utf-8 -*-
#
# License: GNU General Public License (GPL) v3
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later versio... | gpl-3.0 |
pydata/pandas-gbq | tests/system/test_gbq.py | 1 | 60402 | # -*- coding: utf-8 -*-
import datetime
import sys
import numpy as np
import pandas
import pandas.api.types
import pandas.util.testing as tm
from pandas import DataFrame, NaT
try:
import pkg_resources # noqa
except ImportError:
raise ImportError("Could not import pkg_resources (setuptools).")
import pytest
... | bsd-3-clause |
JSLBen/KnowledgeTracing | codes/generate_rnn_data_split_rate_enabled_20.py | 1 | 42778 |
# coding: utf-8
# In[1]:
# imports
import numpy as np
import pandas as pd
import _pickle as cPickle
import random
from datetime import datetime
from time import time
import csv
from AssistmentsProperties import AssistmentsProperties
# In[2]:
# Assistments class for data preprocessing
class DataPreprocessor(obje... | mit |
tienhv/caravel | caravel/data/__init__.py | 1 | 32248 | """Loads datasets, dashboards and slices in a new caravel instance"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
import gzip
import json
import os
import textwrap
import datetime
import random
import pandas as pd... | apache-2.0 |
dssg/wikienergy | disaggregator/build/pandas/pandas/io/tests/test_excel.py | 1 | 55943 | # pylint: disable=E1101
from pandas.compat import u, range, map, openpyxl_compat
from datetime import datetime, date, time
import sys
import os
from distutils.version import LooseVersion
import operator
import functools
import nose
from numpy import nan
import numpy as np
from numpy.testing.decorators import slow
f... | mit |
chrsrds/scikit-learn | sklearn/metrics/cluster/supervised.py | 2 | 34363 | """Utilities to evaluate the clustering performance of models.
Functions named as *_score return a scalar value to maximize: the higher the
better.
"""
# Authors: Olivier Grisel <olivier.grisel@ensta.org>
# Wei LI <kuantkid@gmail.com>
# Diego Molla <dmolla-aliod@gmail.com>
# Arnaud Fouchet ... | bsd-3-clause |
ncvanegmond/dcat | project/apicc/fetch_coinlist.py | 1 | 39839 | #!/user/bin/env python3 -tt
# -*- coding: utf-8 -*-
"""
Module documentation.
Fetch the coins currently available via CryptoCompare API
https://www.cryptocompare.com/api/data/coinlist/
Notes:
MPL does not handle plotting (x,y) = (x,0) values on a x,y axes system?
"""
# Imports
import json
import requests... | mit |
mbaijal/incubator-mxnet | python/mxnet/model.py | 1 | 41990 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
shoyer/xarray | xarray/core/computation.py | 1 | 47711 | """
Functions for applying functions that act on arrays to xarray's labeled data.
"""
import functools
import itertools
import operator
from collections import Counter
from typing import (
TYPE_CHECKING,
AbstractSet,
Any,
Callable,
Dict,
Hashable,
Iterable,
List,
Mapping,
Optiona... | apache-2.0 |
ORTI3D/ORTI3D_code | iliblast/wxVisualisation.py | 1 | 42304 | #import matplotlib
#matplotlib.use('WX')
import matplotlib.backends.backend_wxagg
import matplotlib.backends.backend_qt4agg
from matplotlib.backends.backend_wx import Toolbar, StatusBarWx, FigureCanvasWx
from matplotlib.backends.backend_wx import FigureManager, NavigationToolbar2Wx
# on cree un FigureCanvasWxAgg et non... | gpl-3.0 |
TomTranter/OpenPNM | openpnm/topotools/topotools.py | 1 | 108512 | import warnings
import numpy as np
import scipy as sp
import scipy.sparse as sprs
import scipy.ndimage as spim
from scipy.sparse import csgraph
from scipy.spatial import ConvexHull
from openpnm.utils import PrintableDict, logging, Workspace
logger = logging.getLogger(__name__)
ws = Workspace()
def find_neighbor_sites... | mit |
jseabold/statsmodels | statsmodels/regression/linear_model.py | 1 | 113147 | # TODO: Determine which tests are valid for GLSAR, and under what conditions
# TODO: Fix issue with constant and GLS
# TODO: GLS: add options Iterative GLS, for iterative fgls if sigma is None
# TODO: GLS: default if sigma is none should be two-step GLS
# TODO: Check nesting when performing model based tests, lr, wald,... | bsd-3-clause |
xuewei4d/scikit-learn | sklearn/naive_bayes.py | 4 | 49553 | # -*- coding: utf-8 -*-
"""
The :mod:`sklearn.naive_bayes` module implements Naive Bayes algorithms. These
are supervised learning methods based on applying Bayes' theorem with strong
(naive) feature independence assumptions.
"""
# Author: Vincent Michel <vincent.michel@inria.fr>
# Minor fixes by Fabian Pedre... | bsd-3-clause |
zindy/Imaris | TkDialog.py | 1 | 35443 | # -*- coding: utf-8 -*-
#
# Copyright (c) 2013 Egor Zindy <egor.zindy@manchester.ac.uk>
#
# * ArrayElementVar and ArrayVar based on Bryan Oakley's code from
# http://stackoverflow.com/questions/3876229/how-to-run-a-code-whenever-a-tkinter-widget-value-changes
# * clean() lambda from
# https://stackoverfl... | apache-2.0 |
bbcdli/xuexi | fenlei_tf/script_2019Nov/src/tensor_train_view.py | 1 | 65098 | # 25Apr.2016
# hy:24Jan.2017 v0.48
# Added feed augmented data online, no disk space consumption for these data
# Added test_model_online, replacing previous way of viewing test accuracy online.
# sudo apt-get install python-h5py
# Added eva.sh to run evaluation of multiple models
# Added function for evaluating multip... | apache-2.0 |
MJuddBooth/pandas | pandas/tests/io/test_excel.py | 1 | 101818 | from collections import OrderedDict
import contextlib
from datetime import date, datetime, time, timedelta
from distutils.version import LooseVersion
from functools import partial
import os
import warnings
import numpy as np
from numpy import nan
import pytest
from pandas.compat import PY36, BytesIO, iteritems, map, ... | bsd-3-clause |
openego/dingo | ding0/core/network/grids.py | 1 | 38094 | """This file is part of DING0, the DIstribution Network GeneratOr.
DING0 is a tool to generate synthetic medium and low voltage power
distribution grids based on open data.
It is developed in the project open_eGo: https://openegoproject.wordpress.com
DING0 lives at github: https://github.com/openego/ding0/
The docume... | agpl-3.0 |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/_scatterpolar.py | 1 | 86746 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Scatterpolar(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "scatterpolar"
_valid_props = {
"cliponaxis",
"connectgaps",
"customdata",
... | mit |
anntzer/scikit-learn | sklearn/utils/tests/test_validation.py | 1 | 48667 | """Tests for input validation functions"""
import warnings
import os
from tempfile import NamedTemporaryFile
from itertools import product
from operator import itemgetter
import pytest
from pytest import importorskip
import numpy as np
import scipy.sparse as sp
from sklearn.utils._testing import assert_no_warnings
... | bsd-3-clause |
ENCODE-DCC/geo-submission | src/submission_script.py | 1 | 58104 | import requests
import json
from urllib.parse import urlsplit, urlunsplit, parse_qs
import sys
from time import sleep, strftime
import pandas as pd
import time
import ast
import argparse
from os.path import splitext
def main():
t0 = time.clock()
args = get_args()
# phase 1 - collect all experiments submit... | mit |
yarikoptic/NiPy-OLD | nipy/neurospin/clustering/gmm.py | 1 | 34790 | """
Gaussian Mixture Model Class:
contains the basic fields and methods of GMMs
The class GMM _old uses C bindings which are
computationally and memory efficient.
Author : Bertrand Thirion, 2006-2009
"""
import numpy as np
import nipy.neurospin.clustering.clustering as fc
class grid_descriptor():
"""
A tiny ... | bsd-3-clause |
mgunyho/pyspread | pyspread/src/gui/_widgets.py | 1 | 45163 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright Martin Manns
# Distributed under the terms of the GNU General Public License
# --------------------------------------------------------------------
# pyspread is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Publi... | gpl-3.0 |
ucapdak/loewner | main/PythonTools/LoewnerRun.py | 1 | 45908 | from Constants import *
import matplotlib.pyplot as plt
from subprocess import check_output, CalledProcessError
import matlab.engine
from mpmath import findroot, cot
from cmath import log
from cmath import sqrt as csqrt
from cmath import cos as ccos
from cmath import sin as csin
from math import pi, sin, floor, cos, sq... | mit |
locuslab/dreaml | dreaml/dataframe/dataframe.py | 1 | 64990 | from index import Index
import itertools
import operator
import numpy as np
import scipy.sparse as sp
from transform import Transform
from collections import OrderedDict
import networkx as nx
from os.path import commonprefix
from time import time
from threading import Lock, Thread
import json
from rwlock import ReadWr... | apache-2.0 |
allisony/pyspeckit | pyspeckit/spectrum/models/ammonia.py | 1 | 44703 | """
========================================
Ammonia inversion transition TROT fitter
========================================
Ammonia inversion transition TROT fitter translated from Erik Rosolowsky's
http://svn.ok.ubc.ca/svn/signals/nh3fit/
.. moduleauthor:: Adam Ginsburg <adam.g.ginsburg@gmail.com>
Module API
^^^... | mit |
lancezlin/ml_template_py | lib/python2.7/site-packages/IPython/core/interactiveshell.py | 1 | 132017 | # -*- coding: utf-8 -*-
"""Main IPython class."""
#-----------------------------------------------------------------------------
# Copyright (C) 2001 Janko Hauser <jhauser@zscout.de>
# Copyright (C) 2001-2007 Fernando Perez. <fperez@colorado.edu>
# Copyright (C) 2008-2011 The IPython Development Team
#
# Distribu... | mit |
PG-TUe/tpot | tpot/base.py | 1 | 68849 | # -*- coding: utf-8 -*-
"""This file is part of the TPOT library.
TPOT was primarily developed at the University of Pennsylvania by:
- Randal S. Olson (rso@randalolson.com)
- Weixuan Fu (weixuanf@upenn.edu)
- Daniel Angell (dpa34@drexel.edu)
- and many more generous open source contributors
TPOT is f... | lgpl-3.0 |
bouhlelma/smt | smt/utils/kriging_utils.py | 1 | 32172 | """
Author: Dr. Mohamed A. Bouhlel <mbouhlel@umich.edu>
This package is distributed under New BSD license.
"""
import numpy as np
from packaging import version
from sklearn import __version__ as sklversion
if version.parse(sklversion) < version.parse("0.22"):
from sklearn.cross_decomposition.pls_ import PLSRegre... | bsd-3-clause |
popgengui/negui | agestrucne/pgplottingframe.py | 1 | 40293 | '''
Description
These classes provide tkinter frames that embed
matplotlib plotting figures, with def animate
to update the figure. The animate def is
a wrapper for a client-supplied def. Code to create
and animate was adapted from tutorial at
https://pythonprogramming.net/
plotting-live-bitcoin-price-data-tkinter-... | agpl-3.0 |
chiralhat/mnm-python | smmesr.py | 1 | 61053 | import utility as ut
import glob
import re
import csv
import os
import numpy as np
import pandas as pd
import scipy.optimize as sop
import matplotlib.pyplot as plt
from functools import partial
# These regular expressions are used to extract information from the names
# of the data files
h_patt = '([+-]?\d+(?:\.\d+)?)... | bsd-3-clause |
alpatania/MapperTools | mapper_density.py | 1 | 32954 | # MapperTools -- a Python library that computes a mapper graph
# @author: Alice Patania <alice.patania@gmail.com>
#
# MapperTools/
from collections import defaultdict
import networkx as nx
from numpy import *
import numpy as np
import pandas as pd
import matplotlib
import matplotlib.pyplot as plt
from .inside_mapper i... | gpl-3.0 |
geolovic/TProfiler | Tools/qGIS/ProfilerApp_debug.py | 1 | 39691 | # -*- coding: iso-8859-15 -*-
#
# ProfilerApp.py
#
# Copyright (C) 2017 J. Vicente Perez, Universidad de Granada
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the L... | gpl-3.0 |
nborggren/zipline | zipline/pipeline/loaders/blaze/core.py | 1 | 36385 | """Blaze integration with the Pipeline API.
For an overview of the blaze project, see blaze.pydata.org
The blaze loader for the Pipeline API is designed to allow us to load
data from arbitrary sources as long as we can execute the needed expressions
against the data with blaze.
Data Format
-----------
The blaze Pip... | apache-2.0 |
wmvanvliet/mne-python | mne/preprocessing/ica.py | 1 | 116197 | # -*- coding: utf-8 -*-
#
# Authors: Denis A. Engemann <denis.engemann@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Juergen Dammers <j.dammers@fz-juelich.de>
#
# License: BSD (3-clause)
from inspect import isfunction
from collections import namedtuple
from copy import deepcopy
from... | bsd-3-clause |
zfrenchee/pandas | pandas/tests/scalar/test_period.py | 1 | 51446 | import pytest
import pytz
import numpy as np
from datetime import datetime, date, timedelta
import pandas as pd
import pandas.util.testing as tm
import pandas.core.indexes.period as period
from pandas.compat import text_type, iteritems
from pandas.compat.numpy import np_datetime64_compat
from pandas._libs import tsl... | bsd-3-clause |
kevin-intel/scikit-learn | sklearn/utils/__init__.py | 3 | 38501 | """
The :mod:`sklearn.utils` module includes various utilities.
"""
import pkgutil
import inspect
from importlib import import_module
from operator import itemgetter
from collections.abc import Sequence
from contextlib import contextmanager
from itertools import compress
from itertools import islice
import numbers
impo... | bsd-3-clause |
johnson1228/pymatgen | pymatgen/analysis/adsorption.py | 1 | 30855 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
from __future__ import absolute_import, print_function
"""
This module provides classes used to enumerate surface sites
and to find adsorption sites on slabs
"... | mit |
sserkez/ocelot | cpbd/orbit_correction.py | 1 | 32804 | __author__ = 'Sergey Tomin'
import pickle
from time import sleep
import matplotlib.pyplot as plt
from numpy import diag, shape
from numpy.linalg import svd
from scipy.interpolate import splrep, splev
from ocelot.cpbd.match import closed_orbit
from ocelot.cpbd.track import *
from ocelot.gui.accelerator import *
impo... | gpl-3.0 |
bringingheavendown/numpy | numpy/lib/function_base.py | 1 | 169122 | from __future__ import division, absolute_import, print_function
import collections
import re
import sys
import warnings
import numpy as np
import numpy.core.numeric as _nx
from numpy.core import linspace, atleast_1d, atleast_2d, transpose
from numpy.core.numeric import (
ones, zeros, arange, concatenate, array, ... | bsd-3-clause |
luchko/latticegraph_designer | latticegraph_designer/test/test_designer.py | 1 | 30083 | #!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""Very weak testing of the basic functionality using unittest and QTest"""
from __future__ import division
__author__ = "Ivan Luchko (luchko.ivan@gmail.com)"
__version__ = "1.0a1"
__date__ = "Apr 4, 2017"
__copyright__ = "Copyright (c) 2017, Ivan Luchko and Project Cont... | mit |
nicaogr/Style-Transfer | TransformNet.py | 1 | 36561 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Mon 3 July
The goal of this script is to code the Style Transfer Algorithm
Inspired from https://github.com/cysmith/neural-style-tf/blob/master/neural_style.py
and https://github.com/leongatys/PytorchNeuralStyleTransfer/blob/master/NeuralStyleTransfer.ipy... | gpl-3.0 |
akurtakov/Pydev | plugins/org.python.pydev.core/pysrc/pydevd.py | 1 | 68108 | '''
Entry point module (keep at root):
This module starts the debugger.
'''
import sys
if sys.version_info[:2] < (2, 6):
raise RuntimeError('The PyDev.Debugger requires Python 2.6 onwards to be run. If you need to use an older Python version, use an older version of the debugger.')
import atexit
import os
import... | epl-1.0 |
dean0x7d/pybinding | pybinding/results.py | 1 | 36387 | """Processing and presentation of computed data
Result objects hold computed data and offer postprocessing and plotting functions
which are specifically adapted to the nature of the stored data.
"""
from copy import copy
import numpy as np
import matplotlib.pyplot as plt
from . import pltutils
from .utils import wit... | bsd-2-clause |
sgenoud/scikit-learn | sklearn/linear_model/least_angle.py | 1 | 36669 | """
Least Angle Regression algorithm. See the documentation on the
Generalized Linear Model for a complete discussion.
"""
# Author: Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Gael Varoquaux
#
# License: BSD Style.
from math import log
import sys
... | bsd-3-clause |
sinhrks/pandas-ml | pandas_ml/core/frame.py | 1 | 33093 | #!/usr/bin/env python
import warnings
import numpy as np
import pandas as pd
import pandas.compat as compat
from pandas.util.decorators import Appender, cache_readonly
from pandas_ml.compat import is_list_like
from pandas_ml.core.generic import ModelPredictor, _shared_docs
from pandas_ml.core.series impor... | bsd-3-clause |
noelcjr/EntropyMaxima | em/tools/input_output.py | 1 | 33090 | # -*- coding: utf-8 -*-
"""
Created on Tue Aug 30 23:26:00 2016
@author: noel
"""
import sys
import os
import pandas as pd
import Bio.PDB as struct
import em.describe.utilities as utilities
import em.manipulate.Molecular_Rigid_Manipulations as MRM
from em.charmm.gen import *
from em.charmm import run
def CIF_summary(p... | gpl-3.0 |
OGGM/oggm | oggm/core/massbalance.py | 1 | 50774 | """Mass-balance models"""
# Built ins
import logging
# External libs
import cftime
import numpy as np
import pandas as pd
import netCDF4
from scipy.interpolate import interp1d
from scipy import optimize as optimization
# Locals
import oggm.cfg as cfg
from oggm.cfg import SEC_IN_YEAR, SEC_IN_MONTH
from oggm.utils import... | bsd-3-clause |
costypetrisor/scikit-learn | sklearn/svm/classes.py | 1 | 37224 | import warnings
import numpy as np
from .base import _fit_liblinear, BaseSVC, BaseLibSVM
from ..base import BaseEstimator, RegressorMixin
from ..linear_model.base import LinearClassifierMixin, SparseCoefMixin, \
LinearModel
from ..feature_selection.from_model import _LearntSelectorMixin
from ..utils import check_X... | bsd-3-clause |
tox-dev/tox | tests/unit/config/test_config.py | 1 | 123252 | # coding=utf-8
import os
import re
import sys
from textwrap import dedent
import py
import pytest
from pluggy import PluginManager
from six import PY2
import tox
from tox.config import (
CommandParser,
DepOption,
PosargsOption,
SectionReader,
get_homedir,
get_version_info,
getcontextname,
... | mit |
jseabold/statsmodels | statsmodels/genmod/tests/test_gee.py | 1 | 77202 | """
Test functions for GEE
External comparisons are to R and Stata. The statsmodels GEE
implementation should generally agree with the R GEE implementation
for the independence and exchangeable correlation structures. For
other correlation structures, the details of the correlation
estimation differ among implementa... | bsd-3-clause |
kgullikson88/General | GenericSearch.py | 1 | 43790 | __author__ = 'Kevin Gullikson'
"""
This is a general script for doing the cross-correlations in my companion search.
It is called by several smaller scripts in each of the instrument-specific repositories
"""
import FittingUtilities
import numpy as np
import DataStructures
import Correlate
import HelperFunctions
im... | gpl-3.0 |
cokelaer/msdas | src/msdas/annotations.py | 1 | 33536 | # -*- python -*-
#
# This file is part of MS-DAS software
#
# Copyright (c) 2014 - EBI-EMBL
#
# File author(s): Thomas Cokelaer <cokelaer@ebi.ac.uk>, Marti Bernardo Faura
# bernardo@ebi.ac.uk
#
# Distributed under the GPLv3 License.
# See accompanying file LICENSE.txt or copy at
# http://www.gnu.org/licenses... | gpl-3.0 |
ashmanmode/TTSDNNRepo | src/a_addsamplefeats.py | 1 | 58162 |
import cPickle
import gzip
import os, sys, errno
import time
import math
import subprocess
import socket # only for socket.getfqdn()
# numpy & theano imports need to be done in this order (only for some numpy installations, not sure why)
import numpy
#import gnumpy as gnp
# we need to explicitly import this in some... | apache-2.0 |
kevin-intel/scikit-learn | sklearn/inspection/_plot/partial_dependence.py | 3 | 39142 | import numbers
from itertools import chain
from math import ceil
import numpy as np
from scipy import sparse
from scipy.stats.mstats import mquantiles
from joblib import Parallel
from .. import partial_dependence
from ...base import is_regressor
from ...utils import check_array
from ...utils import check_matplotlib_s... | bsd-3-clause |
fbarreir/panda-server | pandaserver/dataservice/SetupperAtlasPlugin.py | 1 | 137605 | '''
setup dataset for ATLAS
'''
import re
import sys
import time
import types
import urllib
import hashlib
import datetime
import commands
import threading
import traceback
import ErrorCode
import TaskAssigner
from DDM import ddm
from DDM import toa
from DDM import rucioAPI
from dataservice.DDM import dq2Common
from ... | apache-2.0 |
plotly/python-api | packages/python/plotly/plotly/graph_objs/_scattergeo.py | 1 | 80462 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Scattergeo(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "scattergeo"
_valid_props = {
"connectgaps",
"customdata",
"customdatasrc",
... | mit |
prheenan/Research | Personal/EventDetection/_2SplineEventDetector/Detector.py | 1 | 32582 | # force floating point division. Can still use integer with //
from __future__ import division
# This file is used for importing the common utilities classes.
import numpy as np
import matplotlib.pyplot as plt
import sys
from scipy import signal,stats
from Research.Personal.EventDetection.Util import Analysis,Plotting... | gpl-3.0 |
NathanWycoff/SySE | syse/syse.py | 1 | 35031 | import pandas as pd
from stat_parser import Parser
import re
import numpy as np
import unicodedata
import math
from pkg_resources import resource_filename
###
#Syntactic Sentence Extraction (SySE)
#What is sentence extraction?
#Wikipedia has a pretty good description:
#https://en.wikipedia.org/wiki/Sentence_extracti... | mit |
aestrivex/PySurfer | surfer/viz.py | 1 | 96471 | import os
from os.path import join as pjoin
from warnings import warn
import numpy as np
from scipy import stats, ndimage, misc
from matplotlib.colors import colorConverter
import nibabel as nib
from mayavi import mlab
from mayavi.tools.mlab_scene_model import MlabSceneModel
from mayavi.core.ui.api import SceneEdito... | bsd-3-clause |
jakobworldpeace/scikit-learn | sklearn/tests/test_pipeline.py | 1 | 31769 | """
Test the pipeline module.
"""
from tempfile import mkdtemp
import shutil
import time
import numpy as np
from scipy import sparse
from sklearn.externals.six.moves import zip
from sklearn.utils.testing import assert_raises
from sklearn.utils.testing import assert_raises_regex
from sklearn.utils.testing import asse... | bsd-3-clause |
edusegzy/pychemqt | equipment/heatExchanger.py | 1 | 98930 | #!/usr/bin/python
# -*- coding: utf-8 -*-
###############################################################################
# library for heat exchanger calculation
# Equipment:
# -Heat_Exchanger
# -Heat_ExchangerDesign
# -Shell_Tube
# -Hairpin
# -Fired_Heater
#################################################... | gpl-3.0 |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/tests/indexes/test_base.py | 1 | 100981 | from collections import defaultdict
from datetime import datetime, timedelta
from io import StringIO
import math
import operator
import re
import numpy as np
import pytest
import pandas._config.config as cf
from pandas._libs.tslib import Timestamp
from pandas.compat import PY36
from pandas.compat.numpy import np_dat... | apache-2.0 |
LeKono/pyhgnc | src/pyhgnc/manager/query.py | 1 | 40394 | # -*- coding: utf-8 -*-
from collections import Iterable
from pandas import read_sql
from . import models
from .database import BaseDbManager
class QueryManager(BaseDbManager):
"""Query interface to database."""
def _limit_and_df(self, query, limit, as_df=False):
"""adds a limit (limit==None := no... | apache-2.0 |
UASLab/ImageAnalysis | scripts/lib/matcher.py | 1 | 64937 | #!/usr/bin/python3
# put most of our eggs in the gms matching basket:
# https://github.com/JiawangBian/GMS-Feature-Matcher/blob/master/python/gms_matcher.py
import copy
import cv2
import math
from matplotlib import pyplot as plt
import numpy as np
import time
from tqdm import tqdm
import random
import time
from prop... | mit |
hksoni/L2BM-Simulator | SimulationStatsProcessor.py | 1 | 30839 | # ***** begin license block *****
# L2BM Simulator: Lazy Load-Balancing Multicast(L2BM) simulator
# copyright (c) 2016-2017, inria.
#
# this work was partially supported by the anr reflexion project (anr-14-ce28-0019).
# the authors alone are responsible for this work.
#
# see the file authors for details and contact i... | gpl-3.0 |
zuotingbing/spark | python/pyspark/ml/clustering.py | 1 | 60944 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
ktrnka/helpers | sk.py | 1 | 31728 | from __future__ import print_function
from __future__ import unicode_literals
import collections
import itertools
import math
import numbers
from operator import itemgetter
import numpy
import pandas
import scipy.optimize
import scipy.stats
import sklearn
import sklearn.base
import sklearn.linear_model
import sklearn... | mit |
FRESNA/PyPSA | pypsa/opf.py | 1 | 73488 |
## Copyright 2015-2018 Tom Brown (FIAS), Jonas Hoersch (FIAS), David
## Schlachtberger (FIAS)
## This program is free software; you can redistribute it and/or
## modify it under the terms of the GNU General Public License as
## published by the Free Software Foundation; either version 3 of the
## License, or (at you... | gpl-3.0 |
kyoren/https-github.com-h2oai-h2o-3 | h2o-py/h2o/h2o.py | 1 | 82541 | import warnings
warnings.simplefilter('always', DeprecationWarning)
import os
import os.path
import re
import urllib
import urllib2
import imp
import tabulate
from connection import H2OConnection
from job import H2OJob
from expr import ExprNode
from frame import H2OFrame, _py_tmp_key, _is_list_of_lists
from model impor... | apache-2.0 |
fraricci/pymatgen | pymatgen/io/lammps/tests/test_data.py | 1 | 47631 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import unittest
import os
import random
from collections import OrderedDict
import gzip
import json
import numpy as np
import pandas as pd
from ruamel.yaml import YAML
from pymatgen import Molecule, Element, La... | mit |
phoebe-project/phoebe2 | phoebe/frontend/bundle.py | 1 | 658824 | import sys
import subprocess
import os
try:
from subprocess import DEVNULL
except ImportError:
import os
DEVNULL = open(os.devnull, 'wb')
import re
import json
import atexit
import time
from datetime import datetime
from distutils.version import StrictVersion
from copy import deepcopy as _deepcopy
import ... | gpl-3.0 |
eclee25/flu-SDI-exploratory-age | scripts/create_fluseverity_figs_v2/functions_v2.py | 1 | 74050 | #!/usr/bin/python
##############################################
###Python template
###Author: Elizabeth Lee
###Date: 4/24/14
## Purpose: script of functions for data cleaning and processing to draw flu severity figures; supports figures in create_fluseverity_figs
###Command Line: would not be called from command l... | mit |
pysg/pyther | IPyTherm_4.py | 1 | 57417 |
# coding: utf-8
# # Importar las librerías
#
# In[1]:
import scipy as sp
from scipy import optimize
from scipy.optimize import fsolve
import numpy as np
from matplotlib import pyplot
get_ipython().magic('matplotlib inline')
import pandas as pd
from numpy import linalg as LA
from IPython.html import widgets
from IP... | mit |
blaze/distributed | distributed/comm/tests/test_comms.py | 1 | 33053 | import asyncio
import types
from functools import partial
import os
import sys
import threading
import warnings
import pkg_resources
import pytest
from tornado import ioloop
from tornado.concurrent import Future
import distributed
from distributed.metrics import time
from distributed.utils import get_ip, get_ipv6
fr... | bsd-3-clause |
selinerguncu/Yelp-Spatial-Analysis | analysis/cleanData.py | 1 | 31181 | import pandas as pd
import sqlite3 as sqlite
import os
from collections import defaultdict # to handle missing values while writing to the DB
# class cleanData():
def importRawData():
conn = sqlite.connect('/Users/selinerguncu/Desktop/PythonProjects/Fun Projects/Yelp/data/yelpdb.sqlite')
conn.text_factory = str
... | mit |
ahnqirage/spark | python/pyspark/sql/tests.py | 1 | 301042 | # -*- encoding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the ... | apache-2.0 |
pombredanne/lizard-progress | lizard_progress/views/views.py | 1 | 37666 | # (c) Nelen & Schuurmans. GPL licensed, see LICENSE.txt.
"""Views for the lizard-progress app. Includes:
MapView - can show projects as map layers
DashboardView - shows a project's dashboard, can show graphs per area and
offers CSV files for download.
DashboardAreaView - a graph of the project's progr... | gpl-3.0 |
feranick/SpectralMachine | Archive/SpectraLearnPredict/SingleFile/SpectraLearnPredict.py | 1 | 90299 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
'''
**********************************************************
*
* SpectraLearnPredict
* Perform Machine Learning on Spectroscopy Data.
* version: 20180808a
*
* Uses: Deep Neural Networks, TensorFlow, SVM, PCA, K-Means
*
* By: Nicola Ferralis <feranick@hotmail.com>
*
*****... | gpl-3.0 |
daleloogn/mython | rp_extract.py | 1 | 39669 | '''
RP_extract: Rhythm Patterns Audio Feature Extractor
@author: 2014-2015 Alexander Schindler, Thomas Lidy
Re-implementation by Alexander Schindler of RP_extract for Matlab
Matlab version originally by Thomas Lidy, based on Musik Analysis Toolbox by Elias Pampalk
( see http://ifs.tuwien.ac.at/mir/downloads.html )
... | gpl-2.0 |
saopicc/killMS | Wirtinger/ClassWirtingerSolver.py | 1 | 48987 | #!/usr/bin/env python
"""
killMS, a package for calibration in radio interferometry.
Copyright (C) 2013-2017 Cyril Tasse, l'Observatoire de Paris,
SKA South Africa, Rhodes University
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published ... | gpl-2.0 |
sstoma/CellProfiler | cellprofiler/gui/cpframe.py | 1 | 88303 | # -*- Encoding: utf-8 -*-
""" CellProfiler.CellProfilerGUI.CPFrame - Cell Profiler's main window
CellProfiler is distributed under the GNU General Public License.
See the accompanying file LICENSE for details.
Copyright (c) 2003-2009 Massachusetts Institute of Technology
Copyright (c) 2009-2015 Broad Institute
All ri... | gpl-2.0 |
louispotok/pandas | pandas/core/strings.py | 1 | 88762 | import numpy as np
from pandas.compat import zip
from pandas.core.dtypes.generic import ABCSeries, ABCIndex
from pandas.core.dtypes.missing import isna, notna
from pandas.core.dtypes.common import (
is_bool_dtype,
is_categorical_dtype,
is_object_dtype,
is_string_like,
is_list_like,
is_scalar,
... | bsd-3-clause |
joferkington/numpy | numpy/linalg/linalg.py | 1 | 75796 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
anaderi/lhcb_trigger_ml | hep_ml/reports.py | 1 | 31998 | # About
# This module contains functions to build reports:
# training, getting predictions,
# building various plots, calculating metrics
from __future__ import print_function, division, absolute_import
from itertools import islice
from collections import OrderedDict
import time
import warnings
import numpy
import p... | mit |
OSSHealth/ghdata | augur/metrics/pull_request.py | 1 | 58895 | #SPDX-License-Identifier: MIT
"""
Metrics that provide data about pull requests & their associated activity
"""
import datetime
import sqlalchemy as s
import pandas as pd
from augur.util import register_metric
@register_metric()
def pull_requests_merge_contributor_new(self, repo_group_id, repo_id=None, period='day', ... | mit |
dblalock/dig | tests/exper_bits2.py | 1 | 56718 | #!/usr/bin/env python
import functools
import matplotlib.pyplot as plt
import numpy as np
import seaborn as sb
import time
from collections import namedtuple
from scipy import stats
from sklearn.decomposition import TruncatedSVD
import datasets
import files
import product_quantize as pq
import pyience as pyn
from u... | mit |
dmitriz/zipline | tests/test_assets.py | 1 | 42384 | #
# Copyright 2015 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
JeanOlivier/pyHegel | pyHegel/gen_poly.py | 1 | 30253 | # -*- coding: utf-8 -*-
########################## Copyrights and license ############################
# #
# Copyright 2011-2015 Christian Lupien <christian.lupien@usherbrooke.ca> #
# ... | gpl-3.0 |
nmartensen/pandas | pandas/tests/frame/test_analytics.py | 1 | 78745 | # -*- coding: utf-8 -*-
from __future__ import print_function
from datetime import timedelta
from distutils.version import LooseVersion
import sys
import pytest
from string import ascii_lowercase
from numpy import nan
from numpy.random import randn
import numpy as np
from pandas.compat import lrange, product
from p... | bsd-3-clause |
jeromecn/caravel_viz_full | caravel/models.py | 1 | 88506 | """A collection of ORM sqlalchemy models for Caravel"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from collections import OrderedDict
import functools
import json
import logging
import pickle
import re
import tex... | apache-2.0 |
KayneWest/DeepSpeech | rnntest.py | 1 | 37106 | from __future__ import division
import numpy as np
import os, wave, struct
import numpy as np
import subprocess
import re
from itertools import chain
from multiprocessing import cpu_count, Pool
import numpy, theano, sys, math
from theano import tensor as T
from theano import shared
from theano.tensor.signal import down... | mit |
fabioz/Pydev | plugins/org.python.pydev.core/pysrc/tests_python/test_debugger.py | 1 | 170620 | # coding: utf-8
'''
The idea is that we record the commands sent to the debugger and reproduce them from this script
(so, this works as the client, which spawns the debugger as a separate process and communicates
to it as if it was run from the outside)
Note that it's a python script but it'll spawn a ... | epl-1.0 |
dialounke/pylayers | pylayers/gis/layout.py | 1 | 374725 | # -*- coding: utf-8 -*-
#
#
# LAYOUT Module
#
#
#
"""
.. currentmodule:: pylayers.gis.layout
.. autosummary::
"""
from __future__ import print_function
try:
from tvtk.api import tvtk
from mayavi import mlab
except:
print('Layout:Mayavi is not installed')
import pdb
import sys
import os
import logging
i... | mit |
jbrundle/earthquake-forecasts | EQMethods_backup_2016-04-12.py | 1 | 43702 | #!/opt/local/bin python
#import sys
#sys.path.reverse()
# Earthquake Methods library of methods and functions
#
# This code base collects the methods and functions used to make
# plots and maps of earthquake data and activity
#
##########################################################... | mit |
joewandy/pyBatman | pyBatman/pipeline.py | 1 | 36491 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import datetime
import tempfile
import shutil
import copy
import cPickle
from collections import OrderedDict
from distutils.dir_util import copy_tree
from random import randint
import multiprocessing
import json
import numpy as np
import nmrglue as ng
import pan... | gpl-3.0 |
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