Unnamed: 0 int64 0 64.8k | seqname stringlengths 4 10 | source stringclasses 2 values | feature stringclasses 1 value | start int64 1 249M | end int64 107 249M | score float64 8 205k | strand stringclasses 2 values | frame int64 0 0 | gene_id stringlengths 17 24 | gene_type stringlengths 3 34 | gene_name stringlengths 2 25 | level int64 1 3 | havana_gene stringlengths 20 22 ⌀ | tag stringclasses 25 values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
800 | GL000252.2 | HAVANA | gene | 3,635,054 | 3,648,208 | 1,470 | - | 0 | ENSG00000229741.7 | protein_coding | BTNL2 | 2 | OTTHUMG00000149059.3 | null |
801 | GL000252.2 | HAVANA | gene | 3,680,147 | 3,685,357 | 1,280 | + | 0 | ENSG00000228987.9 | protein_coding | HLA-DRA | 2 | OTTHUMG00000149060.1 | null |
802 | GL000252.2 | HAVANA | gene | 3,700,110 | 3,713,765 | 343 | - | 0 | ENSG00000237591.1 | unprocessed_pseudogene | HLA-DRB9 | 2 | OTTHUMG00000149061.1 | null |
803 | GL000252.2 | HAVANA | gene | 3,726,003 | 3,726,098 | 96 | - | 0 | ENSG00000235577.2 | unprocessed_pseudogene | CR759837.1 | 2 | OTTHUMG00000149902.1 | null |
804 | GL000252.2 | HAVANA | gene | 3,767,141 | 3,767,548 | 408 | - | 0 | ENSG00000234470.1 | processed_pseudogene | CR753841.1 | 2 | OTTHUMG00000149839.1 | null |
805 | GL000252.2 | HAVANA | gene | 3,772,703 | 3,773,834 | 1,132 | + | 0 | ENSG00000235391.1 | processed_pseudogene | CR753841.2 | 2 | OTTHUMG00000149840.1 | null |
806 | GL000252.2 | HAVANA | gene | 3,769,856 | 3,789,002 | 797 | - | 0 | ENSG00000233240.1 | unprocessed_pseudogene | CR753309.1 | 2 | OTTHUMG00000149062.2 | null |
807 | GL000252.2 | ENSEMBL | gene | 3,812,002 | 3,812,150 | 149 | - | 0 | ENSG00000265983.1 | snRNA | RF00003 | 3 | null | null |
808 | GL000252.2 | HAVANA | gene | 3,814,543 | 3,848,645 | 1,381 | - | 0 | ENSG00000236884.8 | protein_coding | HLA-DRB1 | 2 | OTTHUMG00000149068.2 | null |
809 | GL000252.2 | HAVANA | gene | 3,872,103 | 3,894,456 | 10,538 | + | 0 | ENSG00000236418.8 | protein_coding | HLA-DQA1 | 2 | OTTHUMG00000149069.5 | null |
810 | GL000252.2 | HAVANA | gene | 3,900,709 | 3,901,559 | 553 | + | 0 | ENSG00000237455.1 | processed_transcript | HLA-DQB1-AS1 | 2 | OTTHUMG00000149070.1 | null |
811 | GL000252.2 | HAVANA | gene | 3,900,715 | 3,903,303 | 310 | - | 0 | ENSG00000240684.1 | processed_transcript | CR753846.2 | 2 | OTTHUMG00000149066.1 | overlapping_locus |
812 | GL000252.2 | HAVANA | gene | 3,900,296 | 3,910,237 | 5,014 | - | 0 | ENSG00000233209.6 | protein_coding | HLA-DQB1 | 2 | OTTHUMG00000149067.4 | overlapping_locus |
813 | GL000252.2 | HAVANA | gene | 3,950,727 | 3,951,559 | 833 | - | 0 | ENSG00000236629.1 | unprocessed_pseudogene | MTCO3P1 | 2 | OTTHUMG00000149074.1 | null |
814 | GL000252.2 | HAVANA | gene | 3,962,111 | 3,962,945 | 449 | + | 0 | ENSG00000234331.1 | processed_transcript | CR753846.1 | 2 | OTTHUMG00000149071.1 | null |
815 | GL000252.2 | HAVANA | gene | 3,975,518 | 3,976,454 | 356 | - | 0 | ENSG00000231596.1 | unprocessed_pseudogene | HLA-DQB3 | 2 | OTTHUMG00000149073.1 | null |
816 | GL000252.2 | HAVANA | gene | 3,986,113 | 3,991,965 | 1,500 | + | 0 | ENSG00000223793.7 | protein_coding | HLA-DQA2 | 2 | OTTHUMG00000149072.2 | null |
817 | GL000252.2 | HAVANA | gene | 4,000,854 | 4,008,293 | 2,030 | - | 0 | ENSG00000228813.9 | protein_coding | HLA-DQB2 | 2 | OTTHUMG00000149076.3 | null |
818 | GL000252.2 | HAVANA | gene | 4,056,481 | 4,060,766 | 1,858 | - | 0 | ENSG00000243496.6 | protein_coding | HLA-DOB | 2 | OTTHUMG00000149075.3 | null |
819 | GL000252.2 | HAVANA | gene | 4,065,551 | 4,082,348 | 6,212 | - | 0 | ENSG00000223481.9 | protein_coding | TAP2 | 2 | OTTHUMG00000149079.3 | null |
820 | GL000252.2 | HAVANA | gene | 4,084,287 | 4,088,273 | 2,006 | - | 0 | ENSG00000230034.8 | protein_coding | PSMB8 | 2 | OTTHUMG00000149080.1 | null |
821 | GL000252.2 | HAVANA | gene | 4,087,656 | 4,090,065 | 1,951 | + | 0 | ENSG00000206232.8 | processed_transcript | PSMB8-AS1 | 2 | OTTHUMG00000149081.1 | overlapping_locus |
822 | GL000252.2 | HAVANA | gene | 4,088,779 | 4,097,548 | 4,576 | - | 0 | ENSG00000224212.4 | protein_coding | TAP1 | 2 | OTTHUMG00000149101.1 | null |
823 | GL000252.2 | HAVANA | gene | 4,087,706 | 4,123,110 | 3,309 | + | 0 | ENSG00000240118.7 | protein_coding | PSMB9 | 2 | OTTHUMG00000149102.3 | overlapping_locus |
824 | GL000252.2 | HAVANA | gene | 4,122,694 | 4,123,371 | 678 | - | 0 | ENSG00000227435.1 | transcribed_processed_pseudogene | PPP1R2P1 | 2 | OTTHUMG00000149100.1 | null |
825 | GL000252.2 | HAVANA | gene | 4,139,934 | 4,140,008 | 75 | + | 0 | ENSG00000237871.1 | unprocessed_pseudogene | HLA-Z | 2 | OTTHUMG00000149099.1 | null |
826 | GL000252.2 | HAVANA | gene | 4,192,143 | 4,196,655 | 2,144 | - | 0 | ENSG00000241394.7 | protein_coding | HLA-DMA | 2 | OTTHUMG00000149104.4 | overlapping_locus |
827 | GL000252.2 | HAVANA | gene | 4,178,158 | 4,196,655 | 4,829 | - | 0 | ENSG00000226264.10 | protein_coding | HLA-DMB | 2 | OTTHUMG00000149103.2 | overlapping_locus |
828 | GL000252.2 | HAVANA | gene | 4,221,380 | 4,225,039 | 2,788 | + | 0 | ENSG00000230678.10 | protein_coding | BRD2 | 2 | OTTHUMG00000149117.3 | null |
829 | GL000252.2 | HAVANA | gene | 4,247,719 | 4,253,152 | 4,011 | - | 0 | ENSG00000235744.11 | protein_coding | HLA-DOA | 2 | OTTHUMG00000149105.3 | null |
830 | GL000252.2 | HAVANA | gene | 4,322,982 | 4,323,391 | 410 | + | 0 | ENSG00000226879.1 | processed_pseudogene | RPL32P1 | 2 | OTTHUMG00000149107.1 | overlapping_locus |
831 | GL000252.2 | HAVANA | gene | 4,308,100 | 4,324,306 | 5,748 | - | 0 | ENSG00000229685.8 | protein_coding | HLA-DPA1 | 2 | OTTHUMG00000149106.3 | null |
832 | GL000252.2 | HAVANA | gene | 4,319,457 | 4,330,724 | 2,791 | + | 0 | ENSG00000237710.10 | protein_coding | HLA-DPB1 | 2 | OTTHUMG00000149113.1 | overlapping_locus |
833 | GL000252.2 | HAVANA | gene | 4,335,276 | 4,340,818 | 733 | - | 0 | ENSG00000223894.1 | unprocessed_pseudogene | HLA-DPA2 | 2 | OTTHUMG00000149111.1 | null |
834 | GL000252.2 | HAVANA | gene | 4,347,291 | 4,347,494 | 99 | - | 0 | ENSG00000232802.1 | unprocessed_pseudogene | COL11A2P1 | 2 | OTTHUMG00000149108.1 | null |
835 | GL000252.2 | HAVANA | gene | 4,371,316 | 4,372,582 | 412 | + | 0 | ENSG00000225429.1 | unprocessed_pseudogene | HLA-DPB2 | 2 | OTTHUMG00000149109.1 | null |
836 | GL000252.2 | HAVANA | gene | 4,374,714 | 4,386,823 | 229 | - | 0 | ENSG00000223696.1 | unprocessed_pseudogene | HLA-DPA3 | 2 | OTTHUMG00000149112.1 | null |
837 | GL000252.2 | HAVANA | gene | 4,388,285 | 4,391,269 | 717 | + | 0 | ENSG00000230134.1 | processed_transcript | HCG24 | 2 | OTTHUMG00000149110.1 | null |
838 | GL000252.2 | HAVANA | gene | 4,406,180 | 4,435,998 | 6,740 | - | 0 | ENSG00000230930.8 | protein_coding | COL11A2 | 2 | OTTHUMG00000149078.4 | null |
839 | GL000252.2 | ENSEMBL | gene | 4,443,100 | 4,443,195 | 96 | + | 0 | ENSG00000266410.2 | misc_RNA | RF00019 | 3 | null | null |
840 | GL000252.2 | HAVANA | gene | 4,437,087 | 4,444,187 | 3,920 | - | 0 | ENSG00000228333.9 | protein_coding | RXRB | 2 | OTTHUMG00000149077.3 | null |
841 | GL000252.2 | HAVANA | gene | 4,443,944 | 4,447,938 | 2,845 | + | 0 | ENSG00000229802.11 | protein_coding | SLC39A7 | 2 | OTTHUMG00000149082.2 | null |
842 | GL000252.2 | HAVANA | gene | 4,448,141 | 4,450,330 | 1,171 | + | 0 | ENSG00000225312.2 | protein_coding | HSD17B8 | 2 | OTTHUMG00000149083.1 | null |
843 | GL000252.2 | HAVANA | gene | 4,451,994 | 4,456,221 | 1,818 | + | 0 | ENSG00000228520.3 | protein_coding | RING1 | 2 | OTTHUMG00000149089.1 | null |
844 | GL000252.2 | HAVANA | gene | 4,459,204 | 4,459,827 | 624 | + | 0 | ENSG00000229394.1 | processed_pseudogene | ZNF70P1 | 2 | OTTHUMG00000149085.1 | null |
845 | GL000252.2 | HAVANA | gene | 4,481,303 | 4,483,194 | 984 | + | 0 | ENSG00000224052.1 | processed_pseudogene | HTATSF1P1 | 2 | OTTHUMG00000149088.1 | null |
846 | GL000252.2 | HAVANA | gene | 4,493,046 | 4,498,501 | 1,374 | + | 0 | ENSG00000233772.5 | processed_transcript | HCG25 | 2 | OTTHUMG00000149086.1 | null |
847 | GL000252.2 | HAVANA | gene | 4,493,784 | 4,515,561 | 4,503 | - | 0 | ENSG00000228425.9 | protein_coding | VPS52 | 2 | OTTHUMG00000149087.1 | null |
848 | GL000252.2 | HAVANA | gene | 4,515,524 | 4,520,024 | 1,898 | + | 0 | ENSG00000223367.6 | protein_coding | RPS18 | 2 | OTTHUMG00000149084.2 | null |
849 | GL000252.2 | HAVANA | gene | 4,520,646 | 4,522,339 | 1,694 | + | 0 | ENSG00000235155.4 | protein_coding | B3GALT4 | 2 | OTTHUMG00000149091.1 | null |
850 | GL000252.2 | HAVANA | gene | 4,522,622 | 4,533,045 | 3,115 | - | 0 | ENSG00000226916.8 | protein_coding | WDR46 | 2 | OTTHUMG00000149090.2 | null |
851 | GL000252.2 | HAVANA | gene | 4,532,820 | 4,541,919 | 2,953 | + | 0 | ENSG00000224782.8 | protein_coding | PFDN6 | 2 | OTTHUMG00000149092.1 | null |
852 | GL000252.2 | HAVANA | gene | 4,535,172 | 4,542,842 | 4,541 | - | 0 | ENSG00000237825.9 | protein_coding | RGL2 | 2 | OTTHUMG00000149093.2 | null |
853 | GL000252.2 | HAVANA | gene | 4,543,212 | 4,557,902 | 4,998 | - | 0 | ENSG00000236490.9 | protein_coding | TAPBP | 2 | OTTHUMG00000149094.2 | null |
854 | GL000252.2 | HAVANA | gene | 4,557,933 | 4,561,457 | 2,715 | - | 0 | ENSG00000227780.5 | protein_coding | ZBTB22 | 2 | OTTHUMG00000149095.3 | null |
855 | GL000252.2 | HAVANA | gene | 4,562,073 | 4,572,783 | 3,666 | - | 0 | ENSG00000206206.11 | protein_coding | DAXX | 2 | OTTHUMG00000149096.3 | null |
856 | GL000252.2 | HAVANA | gene | 4,582,494 | 4,583,011 | 518 | + | 0 | ENSG00000229342.3 | processed_pseudogene | MYL8P | 2 | OTTHUMG00000149097.1 | null |
857 | GL000253.2 | HAVANA | gene | 49,216 | 49,587 | 372 | - | 0 | ENSG00000273083.1 | processed_pseudogene | NOP56P1 | 2 | OTTHUMG00000149129.1 | null |
858 | GL000253.2 | HAVANA | gene | 103,431 | 104,568 | 709 | - | 0 | ENSG00000273040.1 | processed_transcript | BX908720.1 | 2 | OTTHUMG00000149131.1 | null |
859 | GL000253.2 | HAVANA | gene | 126,974 | 127,605 | 632 | + | 0 | ENSG00000273286.1 | processed_pseudogene | RPL13P | 2 | OTTHUMG00000149132.1 | null |
860 | GL000253.2 | HAVANA | gene | 125,183 | 128,908 | 2,458 | - | 0 | ENSG00000273200.1 | processed_transcript | LINC01623 | 2 | OTTHUMG00000149130.1 | null |
861 | GL000253.2 | ENSEMBL | gene | 181,204 | 181,303 | 100 | + | 0 | ENSG00000264777.1 | snRNA | RF00026 | 3 | null | null |
862 | GL000253.2 | HAVANA | gene | 180,335 | 189,548 | 1,619 | - | 0 | ENSG00000237462.10 | protein_coding | TRIM27 | 2 | OTTHUMG00000149384.3 | null |
863 | GL000253.2 | HAVANA | gene | 209,439 | 210,099 | 466 | + | 0 | ENSG00000231041.1 | protein_coding | LINC01556 | 2 | OTTHUMG00000149145.1 | null |
864 | GL000253.2 | HAVANA | gene | 234,692 | 236,022 | 1,331 | - | 0 | ENSG00000226462.1 | processed_pseudogene | KRT18P1 | 2 | OTTHUMG00000149301.1 | null |
865 | GL000253.2 | ENSEMBL | gene | 243,035 | 243,333 | 299 | + | 0 | ENSG00000265326.2 | misc_RNA | RF00017 | 3 | null | null |
866 | GL000253.2 | HAVANA | gene | 251,762 | 253,043 | 1,032 | + | 0 | ENSG00000233035.2 | processed_transcript | HCG15 | 2 | OTTHUMG00000149134.1 | overlapping_locus |
867 | GL000253.2 | HAVANA | gene | 252,359 | 254,095 | 317 | + | 0 | ENSG00000240111.1 | processed_transcript | BX927167.1 | 2 | OTTHUMG00000149133.1 | overlapping_locus |
868 | GL000253.2 | HAVANA | gene | 260,343 | 270,874 | 3,176 | - | 0 | ENSG00000235589.4 | protein_coding | ZNF311 | 2 | OTTHUMG00000149299.1 | null |
869 | GL000253.2 | HAVANA | gene | 292,238 | 293,165 | 928 | - | 0 | ENSG00000232781.1 | unprocessed_pseudogene | OR2AD1P | 2 | OTTHUMG00000149302.1 | null |
870 | GL000253.2 | HAVANA | gene | 309,771 | 310,798 | 1,028 | - | 0 | ENSG00000228652.1 | protein_coding | OR2W1 | 2 | OTTHUMG00000149298.3 | null |
871 | GL000253.2 | HAVANA | gene | 337,381 | 338,156 | 776 | - | 0 | ENSG00000233019.1 | unprocessed_pseudogene | OR2P1P | 2 | OTTHUMG00000149303.1 | null |
872 | GL000253.2 | ENSEMBL | gene | 329,554 | 342,081 | 414 | + | 0 | ENSG00000277403.1 | protein_coding | CR547123.1 | 3 | null | null |
873 | GL000253.2 | HAVANA | gene | 342,130 | 342,725 | 596 | - | 0 | ENSG00000227529.1 | processed_pseudogene | SAR1AP1 | 2 | OTTHUMG00000149385.1 | null |
874 | GL000253.2 | HAVANA | gene | 351,865 | 352,871 | 1,007 | - | 0 | ENSG00000231319.3 | protein_coding | OR2B3 | 2 | OTTHUMG00000149300.3 | null |
875 | GL000253.2 | HAVANA | gene | 366,508 | 367,446 | 939 | + | 0 | ENSG00000225441.1 | unprocessed_pseudogene | OR2J1 | 2 | OTTHUMG00000149135.2 | null |
876 | GL000253.2 | HAVANA | gene | 377,450 | 378,385 | 936 | + | 0 | ENSG00000233636.1 | protein_coding | OR2J3 | 2 | OTTHUMG00000149137.2 | null |
877 | GL000253.2 | HAVANA | gene | 389,769 | 394,466 | 389 | + | 0 | ENSG00000231960.1 | processed_transcript | BX927132.2 | 2 | OTTHUMG00000149371.1 | null |
878 | GL000253.2 | HAVANA | gene | 403,434 | 404,370 | 937 | - | 0 | ENSG00000228846.2 | unprocessed_pseudogene | BX927132.1 | 2 | OTTHUMG00000149136.1 | null |
879 | GL000253.2 | HAVANA | gene | 438,866 | 440,137 | 1,272 | + | 0 | ENSG00000226347.4 | protein_coding | OR2J2 | 2 | OTTHUMG00000149144.3 | null |
880 | GL000253.2 | HAVANA | gene | 447,085 | 448,020 | 936 | + | 0 | ENSG00000230136.2 | unprocessed_pseudogene | OR2J4P | 2 | OTTHUMG00000149139.1 | null |
881 | GL000253.2 | HAVANA | gene | 480,836 | 481,779 | 944 | + | 0 | ENSG00000231919.1 | unprocessed_pseudogene | BX908738.3 | 2 | OTTHUMG00000149140.1 | null |
882 | GL000253.2 | HAVANA | gene | 494,827 | 495,757 | 931 | - | 0 | ENSG00000231320.1 | unprocessed_pseudogene | OR2G1P | 2 | OTTHUMG00000149143.1 | null |
883 | GL000253.2 | HAVANA | gene | 528,277 | 529,653 | 879 | - | 0 | ENSG00000236918.1 | unprocessed_pseudogene | OR2U1P | 2 | OTTHUMG00000149142.1 | null |
884 | GL000253.2 | HAVANA | gene | 489,573 | 532,659 | 464 | + | 0 | ENSG00000225188.1 | processed_transcript | BX908738.1 | 2 | OTTHUMG00000149138.1 | null |
885 | GL000253.2 | HAVANA | gene | 534,036 | 534,995 | 960 | - | 0 | ENSG00000249415.1 | unprocessed_pseudogene | OR2U2P | 2 | OTTHUMG00000149141.1 | null |
886 | GL000253.2 | HAVANA | gene | 556,303 | 557,245 | 943 | + | 0 | ENSG00000227178.2 | unprocessed_pseudogene | BX908738.2 | 2 | OTTHUMG00000149148.1 | null |
887 | GL000253.2 | HAVANA | gene | 572,292 | 573,257 | 966 | + | 0 | ENSG00000234100.4 | protein_coding | OR14J1 | 2 | OTTHUMG00000149147.2 | null |
888 | GL000253.2 | HAVANA | gene | 595,229 | 596,664 | 1,436 | - | 0 | ENSG00000225927.1 | processed_pseudogene | DDX6P1 | 2 | OTTHUMG00000149149.1 | null |
889 | GL000253.2 | HAVANA | gene | 661,700 | 662,768 | 1,069 | + | 0 | ENSG00000233481.4 | protein_coding | OR12D2 | 2 | OTTHUMG00000149146.2 | null |
890 | GL000253.2 | HAVANA | gene | 682,418 | 683,364 | 852 | + | 0 | ENSG00000248182.1 | unprocessed_pseudogene | OR12D1 | 2 | OTTHUMG00000149150.1 | null |
891 | GL000253.2 | HAVANA | gene | 620,834 | 697,102 | 1,335 | - | 0 | ENSG00000243441.6 | protein_coding | OR5V1 | 2 | OTTHUMG00000149152.2 | overlapping_locus |
892 | GL000253.2 | HAVANA | gene | 704,441 | 706,112 | 1,672 | + | 0 | ENSG00000232397.5 | protein_coding | OR10C1 | 2 | OTTHUMG00000149159.3 | null |
893 | GL000253.2 | HAVANA | gene | 638,713 | 715,227 | 2,011 | - | 0 | ENSG00000224487.8 | protein_coding | OR12D3 | 2 | OTTHUMG00000149158.1 | overlapping_locus |
894 | GL000253.2 | HAVANA | gene | 690,640 | 722,195 | 2,864 | - | 0 | ENSG00000237258.8 | protein_coding | OR11A1 | 2 | OTTHUMG00000149153.1 | overlapping_locus |
895 | GL000253.2 | HAVANA | gene | 722,305 | 729,453 | 3,708 | + | 0 | ENSG00000224395.8 | protein_coding | OR2H1 | 2 | OTTHUMG00000149157.1 | null |
896 | GL000253.2 | HAVANA | gene | 729,721 | 734,931 | 381 | - | 0 | ENSG00000226365.1 | unprocessed_pseudogene | UBDP1 | 2 | OTTHUMG00000149155.1 | null |
897 | GL000253.2 | HAVANA | gene | 740,150 | 741,196 | 1,047 | - | 0 | ENSG00000230957.1 | unprocessed_pseudogene | MAS1LP1 | 2 | OTTHUMG00000149151.1 | null |
898 | GL000253.2 | HAVANA | gene | 751,891 | 753,027 | 1,137 | - | 0 | ENSG00000228377.3 | protein_coding | MAS1L | 2 | OTTHUMG00000149156.2 | null |
899 | GL000253.2 | HAVANA | gene | 754,397 | 754,802 | 406 | - | 0 | ENSG00000228840.3 | processed_pseudogene | RPS17P1 | 2 | OTTHUMG00000149154.1 | null |
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