reference
stringlengths 7
774
⌀ | aptamer_chemistry
stringclasses 21
values | aptamer_name
stringlengths 1
164
| target_name
stringlengths 2
1.2k
⌀ | aptamer_sequence
stringlengths 2
380
| origin
stringclasses 6
values | target_chemistry
stringclasses 11
values | external_id
stringclasses 509
values | target_sequence
stringclasses 357
values | new_affinity
stringlengths 3
193
⌀ |
|---|---|---|---|---|---|---|---|---|---|
null |
DNA
|
[" 'DNA (41-MER)'"]
|
["'Antiviral innate immune response receptor RIG-I'"]
|
[" 'ATCTCXGXGXCAXGXGXXXXAAXGXCAGXXXAAXGAXGAGG'"]
|
https://www.nakb.org/
|
Protein
|
7MK1
|
["'PDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEMSK'"]
|
Not Mentioned in Database
|
null |
DNA
|
[" 'NU172'", " 'HD22_27mer'"]
|
["'Prothrombin'", " 'Prothrombin'"]
|
[" 'CGCCTAGGTTGGGTAGGGTGGTGGCG'", " 'GTCCGTGGTAGGGCAGGTTGGGGTGAC'"]
|
https://www.nakb.org/
|
Protein
|
7NTU
|
["'TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR'", " 'IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE'"]
|
Not Mentioned in Database
|
null |
DNA
|
[" 'DNA (37-MER)'"]
|
["'Reverse transcriptase/ribonuclease H'", " 'Reverse transcriptase/ribonuclease H'"]
|
[" 'TAATATCCCCCCTTCGGTGCTTTGCACCGAAGGGGGG'"]
|
https://www.nakb.org/
|
Protein
|
7OZW
|
["'MVPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTNSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA'", " 'PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQ'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'Lanthanide-binding aptamer'"]
|
[]
|
["'CGGCCGTCGAAGACCCGCGAAGTGGCCG'"]
|
https://www.nakb.org/
|
Small Molecule
|
7QB3
|
[]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (38-MER)'"]
|
["'FMN'"]
|
["'GGAUACACAAGAGUGAUUGAAACUAAGUCUGUGUAUCC'"]
|
https://www.nakb.org/
|
Small Molecule
|
7RWR
|
["'Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)O)O)O)O'"]
|
Not Mentioned in Database
|
null |
DNA
|
['"TBA G4 DNA (5\'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3\')"']
|
["'5L1'"]
|
["'GGTTGGTGTGGTTGG'"]
|
https://www.nakb.org/
|
Small Molecule
|
7V3T
|
["'C[N]1=C(N(C=C1)c2ccccn2)[Pt]3(c4cc(cc(c4C5=[N]3C=CC=C5)F)F)C6=[N](C=CN6C)c7ccccn7'"]
|
Not Mentioned in Database
|
null |
DNA
|
[' "DNA (5\'-D(*GP*CP*GP*GP*TP*TP*GP*GP*TP*GP*GP*TP*AP*GP*TP*TP*AP*CP*GP*TP*TP*CP*GP*C)-3\')"']
|
["'bevacizumab fab light chain'", " 'bevacizumab fab heavy chain'"]
|
[" 'GCGGTTGGTGGTAGTTACGTTCGC'"]
|
https://www.nakb.org/
|
Protein
|
7V5N
|
["'DIQMTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC'", " 'EVQLVESGGGLVQPGGSLRLSCAASGYTFTNYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPHYYGSSHWYFDVWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT'"]
|
Not Mentioned in Database
|
null |
DNA
|
[" 'IR-A62 aptamer'"]
|
["'Isoform Short of Insulin receptor'"]
|
[" 'CXXXAXGXAXGXGXCXAGXXCXGX'"]
|
https://www.nakb.org/
|
Protein
|
7YQ6
|
["'HLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTTTQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDKASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTD'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'brocolli-pepper aptamer'"]
|
["'J93'", " '1TU'"]
|
["'GGAUACGUCUACGCUCAGUGACGGACUCUCUUCGGAGAGUCUGACAUCCGAACCAUACACGGAUGUGCCUCGCCGAACAGUCUACGGCGAGCUUAAGCGCUGGGGACGCCCAACGCAUCACAAAGACUGAGUGAUGAACCAGAAGUAUGGACUGGUUGCGUUGGUGGAGACGGUCGGGUCCAGUUCGCUGUCGAGUAGAGUGUGGGCUCCAUCGACGCCGCUUUAAGGUCCCCAAUCGUGGCGUGUCGGCCUGCUUCGGCAGGCACUGGCGCCGGGACCUUGAAGAGAUGAGAUUUCGAUCUCAUCUUUGGGUGUCUCUGGUGCUUGAGGGCCCUGUGUUCGCACAGGGCCGCUCACUGGGUGUGGACGUAUCC'"]
|
https://www.nakb.org/
|
Small Molecule
|
7ZJ4
|
["'CN(CCO)c1cc2c(s1)cc(s2)C=C(C#N)c3ccc(cc3)C#N'", " 'Cc1nc(c(n1C)O)Cc2cc(c(c(c2)F)O)F'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'brocolli-pepper aptamer'"]
|
[]
|
["'GGAUACGUCUACGCUCAGUGACGGACUCUCUUCGGAGAGUCUGACAUCCGAACCAUACACGGAUGUGCCUCGCCGAACAGUCUACGGCGAGCUUAAGCGCUGGGGACGCCCAACGCAUCACAAAGACUGAGUGAUGAACCAGAAGUAUGGACUGGUUGCGUUGGUGGAGACGGUCGGGUCCAGUUCGCUGUCGAGUAGAGUGUGGGCUCCAUCGACGCCGCUUUAAGGUCCCCAAUCGUGGCGUGUCGGCCUGCUUCGGCAGGCACUGGCGCCGGGACCUUGAAGAGAUGAGAUUUCGAUCUCAUCUUUGGGUGUCUCUGGUGCUUGAGGGCCCUGUGUUCGCACAGGGCCGCUCACUGGGUGUGGACGUAUCC'"]
|
https://www.nakb.org/
|
Small Molecule
|
7ZJ5
|
[]
|
Not Mentioned in Database
|
null |
DNA
|
[" 'TBA-NNp/DDp'"]
|
["'Thrombin light chain'", " 'Thrombin heavy chain'"]
|
[" 'GGTTGGTGTGGTTGG'"]
|
https://www.nakb.org/
|
Protein
|
7ZKL
|
["'TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR'", " 'IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'DNA (30-MER)'"]
|
[" 'Transferrin receptor protein 1'"]
|
["'GCAGCAGCGTAAAGGGGGTGTTTGTGCGGTGTGGAGTGCGCGTGCTGCTGC'"]
|
https://www.nakb.org/
|
Protein
|
7ZQS
|
[" 'MMDQARSAFSNLFGGEPLSYTRFSLARQVDGDNSHVEMKLAVDEEENADNNTKANVTKPKRCSGSICYGTIAVIVFFLIGFMIGYLGYCKGVEPKTECERLAGTESPVREEPGEDFPAARRLYWDDLKRKLSEKLDSTDFTGTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVKIQVKDSAQNSVIIVDKNGRLVYLVENPGGYVAYSKAATVTGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVKLTVSNVLKEIKILNIFGVIKGFVEPDHYVVVGAQRDAWGPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNLDYERYNSQLLSFVRDLNQYRADIKEMGLSLQWLYSARGDFFRATSRLTTDFGNAEKTDRFVMKKLNDRVMRVEYHFLSPYVSPKESPFRHVFWGSGSHTLPALLENLKLRKQNNGAFNETLFRNQLALATWTIQGAANALSGDVWDIDNEF'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (33-MER)'"]
|
["'TEP'", " 'MG'", " 'NA'"]
|
["'GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8D28
|
["'CN1c2c([nH]cn2)C(=O)N(C1=O)C'", " '[Mg+2]'", " '[Na+]'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (33-MER)'"]
|
["'QB3'", " 'NA'", " 'MG'"]
|
["'GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8D2A
|
["'CN1CCC(CC1)COc2cc3c(cc2OC)c(ncn3)O'", " '[Na+]'", " '[Mg+2]'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (33-MER)'"]
|
["'QAX'", " 'MG'", " 'NA'"]
|
["'GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8D2B
|
["'COc1cc2c(cc1OCCCN3CCCCC3)ncnc2O'", " '[Mg+2]'", " '[Na+]'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (33-MER)'"]
|
["'QIJ'", " 'MG'", " 'CA'", " 'NA'"]
|
["'GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8D5L
|
["'CN1C(=O)C=NC2=C1NC(=O)N=C2N'", " '[Mg+2]'", " '[Ca+2]'", " '[Na+]'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (33-MER)'"]
|
["'QEU'"]
|
["'GGCGAUACCAGCCGAAAGGCCCUUGGCAGCGCC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8D5O
|
["'COc1cc2c(cc1OC)ncnc2N3CCN(CC3)CCCCO'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (49-MER)'"]
|
[" 'X5R'"]
|
["'GCGCCGGUUAGGCAGAGGUGGGUGGUGUGGAGGAGUAUCUGUCCGGCGC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8EYU
|
[" 'CN1C(=NC(=Cc2cc(c(c(c2)F)O)F)C1=O)C=CC(=O)OC'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (45-MER)'"]
|
[" '747'"]
|
["'GCGCCGGUUAGGCAGAGGUGGGUGGUGUGGAGGAGUAUCUGUCCGGCGC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8EYV
|
[" 'CN1C(=NC(=Cc2cc(c(c(c2)F)O)F)C1=O)C=NO'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (49-MER)'"]
|
[" 'TFX'"]
|
["'GCGCCGGUUAGGCAGAGGUGGGUGGUGUGGAGGAGUAUCUGUCCGGCGC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8EYW
|
[" 'Cc1ccc2c(c1)sc([n+]2C)c3ccc(cc3)N(C)C'"]
|
Not Mentioned in Database
|
null |
RNA
|
["'RNA (49-MER)'"]
|
[" '747'"]
|
["'GCGCCGGUUAGGCAGUGGUGGGUGGUGUGGAGGAGUAGCUGUCCGGCGC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8F0N
|
[" 'CN1C(=NC(=Cc2cc(c(c(c2)F)O)F)C1=O)C=NO'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'Lettuce DNA aptamer'"]
|
[" 'MG'", " '2ZY'"]
|
["'CTTAGTAGGGATGATGCGGCAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG'"]
|
https://www.nakb.org/
|
Small Molecule
|
8FHV
|
[" '[Mg+2]'", " 'CC1=NC(=Cc2cc(c(c(c2)F)O)F)C(=O)N1CC(F)(F)F'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'Lettuce DNA aptamer'"]
|
[" 'MG'", " '747'"]
|
["'CTTAGTAGGGATGATGCGGCAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG'"]
|
https://www.nakb.org/
|
Small Molecule
|
8FHZ
|
[" '[Mg+2]'", " 'CN1C(=NC(=Cc2cc(c(c(c2)F)O)F)C1=O)C=NO'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'Lettuce DNA aptamer'"]
|
[" 'MG'", " 'X5R'"]
|
["'CTTAGTAGGGATGATGCGGCAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG'"]
|
https://www.nakb.org/
|
Small Molecule
|
8FI0
|
[" '[Mg+2]'", " 'CN1C(=NC(=Cc2cc(c(c(c2)F)O)F)C1=O)C=CC(=O)OC'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'Lettuce DNA aptamer'"]
|
[" 'MG'", " '747'"]
|
["'CTTAGTAGGGATGATGCGGGAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG'"]
|
https://www.nakb.org/
|
Small Molecule
|
8FI1
|
[" '[Mg+2]'", " 'CN1C(=NC(=Cc2cc(c(c(c2)F)O)F)C1=O)C=NO'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'Lettuce DNA aptamer'"]
|
[" 'MG'", " '2ZY'"]
|
["'CTTAGTAGGGATGATGCGGTAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG'"]
|
https://www.nakb.org/
|
Small Molecule
|
8FI2
|
[" '[Mg+2]'", " 'CC1=NC(=Cc2cc(c(c(c2)F)O)F)C(=O)N1CC(F)(F)F'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'Lettuce DNA aptamer'"]
|
[" 'MG'", " '747'"]
|
["'CTTAGTAGGGATGATGCGGTAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG'"]
|
https://www.nakb.org/
|
Small Molecule
|
8FI7
|
[" '[Mg+2]'", " 'CN1C(=NC(=Cc2cc(c(c(c2)F)O)F)C1=O)C=NO'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'Lettuce DNA aptamer'"]
|
[" 'MG'", " 'X5R'"]
|
["'CTTAGTAGGGATGATGCGGTAGTGGGCTTCGCAGTTCCTGCGAGGGGACTAAG'"]
|
https://www.nakb.org/
|
Small Molecule
|
8FI8
|
[" '[Mg+2]'", " 'CN1C(=NC(=Cc2cc(c(c(c2)F)O)F)C1=O)C=CC(=O)OC'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'25-mer DNA'"]
|
[" 'BA'"]
|
["'GACGACGGGTTCACAGTCCGTTGTC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8GZJ
|
[" '[Ba+2]'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'25-mer DNA'"]
|
[" 'BA'"]
|
["'GACGACGGGATCACAGTCCGTTGTC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8GZK
|
[" '[Ba+2]'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'25-mer DNA'"]
|
[" 'BA'"]
|
["'GACGACGGGTCCACGGTCCGTTGTC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8GZL
|
[" '[Ba+2]'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'25-mer DNA'"]
|
[" 'BA'"]
|
["'GCCGACGGGTTCACAGTCCGTCGGC'"]
|
https://www.nakb.org/
|
Small Molecule
|
8GZM
|
[" '[Ba+2]'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'AFB1 DNA aptamer (26-MER)'"]
|
["'AFT'"]
|
["'CACGTGTTGTCTCTCTGTGTCTCGTG'"]
|
https://www.nakb.org/
|
Small Molecule
|
8IF5
|
["'COc1cc2c(c3c1C4=C(C(=O)CC4)C(=O)O3)C5C=COC5O2'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'AM032-0'", " 'AM047-0'"]
|
[" 'Fab Light chain (REGN10987)'", " 'Fab heavy chain (REGN10987)'", " 'Spike protein S1'"]
|
["'TATCGAGCGTCCTGCCTTTGCGGAGGXGAACCXXACGXXCAACXGGAXCGXGXGXAGGXACACCGACAGCCACCCAGAAA'", " 'CTGXCGGXAAGGGAGCXAGXGXAXGCCCCXGAGXXGGGGAXAXCGCCGACAG'"]
|
https://www.nakb.org/
|
Protein
|
8J1Q
|
[" 'QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSHHHHHHHH'", " 'QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKSNSLVPRGSPSRLEEELRRRLTE'", " 'RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFENLYFQGAAAGGSHHHHHHGGSDYKDDDDK'"]
|
Not Mentioned in Database
|
null |
DNA
|
["'AM032-4'", " 'AM047-6'"]
|
[" 'Fab light chain (REGN10987)'", " 'Fab heavy chain (REGN10987)'", " 'Spike protein S1'"]
|
["'GCGGTGAACCXXACGXXCAACXGGAXCGXGXGXAGGXGCACCGC'", " 'GGCGGCAAGGGAGCXAGXGXAXGCCCCXGAGXXGGGGAXAXCGCCGCC'"]
|
https://www.nakb.org/
|
Protein
|
8J26
|
[" 'QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVSNRFSGSKSGNTASLTISGLQSEDEADYYCNSLTSISTWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSHHHHHHHH'", " 'QVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMYWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRTEDTAVYYCASGSDYGDYLLVYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKSNSLVPRGSPSRLEEELRRRLTE'", " 'RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFENLYFQGAAAGGSHHHHHHGGSDYKDDDDK'"]
|
Not Mentioned in Database
|
Kakoti A, Goswami P. Biochimica et Biophysica Acta Multifaceted analyses of the interactions between human heart type fatty acid binding protein and its speci fi c aptamers. BBA - Gen Subj. 2017;1861(1):3289-99.
| null |
N53
|
Human Fatty acid binding protein 3 (hFABP3)
|
CACCTAATACGACTCACTATAGCGGATCCGAGGGGGTAGCGGGTGGGCCGGTGGATGCGGGGCGCCGGCGCCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.3337 (+/-) 0.1485,
|
Kakoti A, Goswami P. Biochimica et Biophysica Acta Multifaceted analyses of the interactions between human heart type fatty acid binding protein and its speci fi c aptamers. BBA - Gen Subj. 2017;1861(1):3289-99.
| null |
N13
|
Human Fatty acid binding protein 3 (hFABP3)
|
CACCTAATACGACTCACTATAGCGGATCCGAAGGGGGCGCGAGGTGTAAGGGTGTGGGGTGGTGGGTGGGCCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.0743 (+/-) 0.0142?M,
|
Priyamvada Jain, Babina Chakma, Sanjukta Patra, Pranab Goswami, Hairpin stabilized fluorescent silver nanoclusters for quantitative detection of NAD+ and monitoring NAD+/NADH based enzymatic reactions. Analytica Chimica Acta, 956, 2017, 48-56
| null |
P45
|
Plasmodium falciparum Lactate dehydrogenase (PfLDH)
|
CACCTAATACGACTCACTATAGCGGATCCGACAGTCCTCTCACCATTCTTCTACATGTAATCTTCCGCGTCCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.89 (+/-) 0.14,
|
Priyamvada Jain, Babina Chakma, Sanjukta Patra, Pranab Goswami, Hairpin stabilized fluorescent silver nanoclusters for quantitative detection of NAD+ and monitoring NAD+/NADH based enzymatic reactions. Analytica Chimica Acta, 956, 2017, 48-56
| null |
P9
|
Plasmodium falciparum Lactate dehydrogenase (PfLDH)
|
CACCTAATACGACTCACTATAGCGGATCCGATTACCCACCCGACTCCCCTAGCATTCTCCATCCAACCGGCCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.73 (+/-) 0.05,
|
Priyamvada Jain, Babina Chakma, Sanjukta Patra, Pranab Goswami, Hairpin stabilized fluorescent silver nanoclusters for quantitative detection of NAD+ and monitoring NAD+/NADH based enzymatic reactions. Analytica Chimica Acta, 956, 2017, 48-56
| null |
P38
|
Plasmodium falciparum Lactate dehydrogenase (PfLDH)
|
CACCTAATACGACTCACTATAGCGGATCCGACAATAATACACTTTGCTCCCCTGTGGCTTTTCGCACTCGCCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.35 (+/-) 0.02,
|
Chakma B, Jain P, Singh NK, Goswami P. Development of Electrochemical Impedance Spectroscopy Based Malaria Aptasensor Using HRP-II as Target Biomarker. Electroanalysis. 2018;30(8):1839-46.
| null |
B3
|
histidine rich protein II (HRP II)
|
CACCTAATACGACTCACTATAGCGGATCCGAATCAGCAGAAACAAGAATCGACTGTCTTCTCGATAGGGGGCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
8.34 kcal.mole-1,
|
Chakma B, Jain P, Singh NK, Goswami P. Development of Electrochemical Impedance Spectroscopy Based Malaria Aptasensor Using HRP-II as Target Biomarker. Electroanalysis. 2018;30(8):1839-46.
| null |
B4
|
histidine rich protein II (HRP II)
|
CACCTAATACGACTCACTATAGCGGATCCGAACGGCAATTAGCCCCCTTTCCTCCTGGCCTCGGTCGGCGGCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
20.40 kcal.mole-1,
|
Singh NK, Chakma B, Jain P, Goswami P. Protein-Induced Fluorescence Enhancement Based Detection of Plasmodium falciparum Glutamate Dehydrogenase Using Carbon Dot Coupled Specific Aptamer. ACS Comb Sci. 2018;20(6):3507.
| null |
NG51
|
Plasmodium falciparum glutamate dehydrogenase (PfGDH)
|
TCACCTCATACGACTCACTATAGCGGACCCCACTCACTGCTCGGACTCTCCCCCTCCCCGCCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
1.1 (+/-) 0.20 micro Molar,
|
Singh NK, Chakma B, Jain P, Goswami P. Protein-Induced Fluorescence Enhancement Based Detection of Plasmodium falciparum Glutamate Dehydrogenase Using Carbon Dot Coupled Specific Aptamer. ACS Comb Sci. 2018;20(6):3507.
| null |
NG3
|
Plasmodium falciparum glutamate dehydrogenase (PfGDH)
|
TCACCTCATACGACTCACTATAGCGGATCCGAGCCGGGGTGTTCTGTTGGCGGGGGCGGTGGGCGGGCTGGCTCGAACAAGCTTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.5 (+/-) 0.04 Micro Molar,
|
Park, J.-W., Tatavarty, R., Kim, D. W., Jung, H.-T., & Gu, M. B. (2012). Immobilization-free screening of aptamers assisted by graphene oxide. Chem. Commun., 48(15), 20712073. doi:10.1039/c2cc16473f SJ Lee et al. Sensitive detection of adipokines for early diagnosis of type 2 diabetes using enzyme-linked antibody-aptamer sandwich (ELAAS) assays. Sensors Actuat. B-Chem.(2012): 243-248
| null |
Nampt binding aptamer (NBA)
|
Nampt/Nicotinamide phosphoribosyltransferase
|
ATACCAGCTTATTCAATTGGGCGGTGGGGGGGGTAGTGGGTGTTATGGCGATCGTGGAGATAGTAAGTGCAATCT
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
72.52 nM,
|
Sumedha and Dang. "Oligonucleotide inhibitors of Taq DNA polymerase facilitate detection of low copy number targets by PCR." Journal of Molecular Biology, 264 (1996): 268-78.
| null |
Taq DNA polymerase (TQ21)
|
Taq DNA polymerase
|
TTCTCGGTTGGTCTCTGGCGGAGCGATCATCTCAGAGCATTCTTAGCGTTTTGTTCTTGTGTATGTTCGCTTTTCCC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
36 pM,
|
Huang, Y. et al. "Selection, identification and application of a DNA aptamer against Staphylococcus aureus enterotoxin A." Anal. Methods, 2014, 6, 690-697.
| null |
A23.2
|
Staphylococcus aureus enterotoxin A (SEA)
|
AGCAGCACAGAGGTCAGATGAAGGTCTTACATCAATTTATATATTTTTCCAATATCTGTCCCTATGCGTGCTACCGTGAA
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
235.00 nM,
|
Tang et al. "Generating Aptamers for Recognition of Virus-Infected Cells." Clin. Chem., 55(2009): 813-822.
| null |
Vaccinia virusinfected A549 cells
|
Vaccinia virus (WR Strain)infected A549 cells
|
ATCGTCTGCTCCGTCCAATATGATGACACCTGCATAATTTATAGTGAGTCTTGATTCACGCTGCATTTGGTGTGAGGTCGTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Cells
| null | null |
2.7 nM,
|
Dai, H. et al. "Aptamer TY04 inhibits the growth of multiple myeloma cells via cell cycle arrest." Tumor Biology 2014: 1-8
| null |
Aptamer TY04
|
Multiple myeloma cells (MM.1S
|
ATCGTCTGCTCCGTCCAATATATCAAAGGCGAATTTTGTCAAGGTGTTAAACGATAGTCCCTACCTTTGGTGTGAGGTCGTGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Cells
| null | null |
3.89 µM,
|
P Nadal et al. DNA aptamers against the Lup an 1 food allergen. PLoS One 7(2012):e35253
| null |
Lup an 1 allergen, ß-Conglutin
|
ß-Conglutin
|
AGCTGACACAGCAGGTTGGTGGGGGTGGCTTCCAGTTGGGTTGACAATACGTAGGGACACGAAGTCCAACCACGAGTCGAGCAATCTCGAAAT
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
360 nM,
|
Chang, T., Blank, M., Janardhanan, P., Singh, B., Mello, C., Blind, M., Cai, S. "In vitro selection of RNA aptamers that inhibit the activity of type A botulinum neurotoxin." Biochemical and Biophysical Research Communications 396(2010): 854-860.
| null |
Botulinum neurotoxin type A (BoNT A) Aptamer
|
BoNT A Light Chain
|
GGGAGGAGGAGAGATGTGAACTTGACAGCGUGCCUAGAAGUCCAAGCUUAAAUAACCACGCUCGACAAGCAGAAACTCTACACTGGACTGGCG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
87 nM,
|
Saito, Takesh et al. "Generation of Inhibitory DNA Aptamers Against Human Hepatocyte Growth Factor." DNA and Cell Biology, 24 (2005): 624-633.
| null |
HGF (H38-15)
|
Human Hepatocyte Growth Factor
|
AGATGCCTGTCCAGCATCGAGCGCCAGCTTTGCTGATGGGTGGCCACCCTTGCCCTGGGTTTGAATTTCGATCCTATCGGTAGCTAGACTGCTTTGTCCTCG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
19 nM,
|
Ali et al. "Fluorogenic DNAzyme Probes as Bacterial Indicators." Angewandte Chemie International Edition, 50 (2011): 3751-3754.
| null |
Crude Extracellular Mixture of E. coli - cis
|
Crude Extracellular Mixture (CEM) of E. coli
|
CACGGATCCTGACAAGGATGTGTGCGTTGTCGAGACCTGCGACCGGAACACTACACTGTGTGGGATGGATTTCTTTACAGTTGTGTGCAGCTCCGTCCGACTCTTCCTAGCInternalFluoresceindTAInternalDabcyldTGGTTCGATCAAGA
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
N/A nM,
|
Barfod, Anders et al. "In Vitro Selection of RNA Aptamers Directed Against Protein E: A Haemophilus influenzae Adhesin." Mol Biotech, 2014: 1-12
| null |
Clone 2
|
Protein E (PE)
|
CGACTGCAGAGCTTGCTACGTTGTAATTCAAAACAAAGGTTTCCTGGACTCCCCGCAGGTCTTGTGAATGGTACCGAGCTCGAATTCCC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
1.2 nM,
|
A. K. Dey et. al. Structural characterization of an anti-gp120 RNA aptamer that neutralizes R5 strains of HIV-1. RNA 11:873-884
| null |
HIV-1 R5 SU Glycoprotein gp120 (B40t77)
|
HIV-1 R5 gp120
|
GGGAGACAAGACUAGACGCUCAAUGUGGGCCACGCCCGAUUUUACGCUUUUACCCGCACGCGAUUGGUUUGUUUCCC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
31 nM,
|
Gong, Q. et al,(2012). Selection strategy to generate aptamer pairs that bind to distinct sites on protein targets. Analytical Chemistry, 2012(84), 5365-5371.
| null |
Integrin ß3 subunit (ß3-1)
|
Integrin ß3 subunit
|
GGGAGGACGAUGCGGCCCAGAUUACUGUGGAGUGGUUGUCUGCGAAUCCUUCGUCCACCCAAUAGCAGACGACUCGCCCGA
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
6.5 nM,
|
Bridonneau, P., et al. "High-Affinity Aptamers Selectively Inhibit Human Nonpancreatic Secretory Phospholipase A2 (hnps-PLA2)." Journal of Medicinal Chemistry, 41(1998): 778-786.
| null |
Human Nonpancreatic Secretory Phospholipase A2 (Aptamer 15)
|
Human Nonpancreatic Secretory Phospholipase A2 (hnps-PLA2)
|
GGGAAAAGAGACGGCCGGCGCCAUAGCCGAGAUCCGAGGUGUUGCCGAGAA
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Small Organic
| null | null |
1.7 nM,
|
Green L, Jellinek D, Janjic N, et al. (1995) "Nuclease-resistant nucleic acid ligands to vascular permeability factor/vascular endothelial growth factor." Chem Biol. 2:683-695.
| null |
Vascular Permeability Factor/Vascular Endothelial Growth Factor (NX-213)
|
Vascular Permeability Factor/Vascular Endothelial Growth Factor (VPF/VEGF)
|
TTTTACCCUGAUGGUAGACGCCGGGGUGTTTT
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
140 pM,
|
https://patents.google.com/patent/US9125930B2/en?oq=US+9125930
| null |
CL4
|
EGFR
|
GCCUUAGUAACGUGCUUUGAUGUCGAUUCGACAGGAGGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
nucleic acid
| null | null |
10 nM,
|
Selection of High-Affinity RNA Ligands to Reverse Transcriptase: Inhibition of cDNA Synthesis and RNase H Activity." Journal of Biochemistry, 33(1994)
| null |
Moloney Murine Leukemia Virus
|
Moloney Murine Leukemia Virus
|
UUACCACGCGCUCUUAACUGCUAGCGCCAUGGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
6.9 nM,
|
Jellinek, D., et al. "High-affinity RNA ligands to basic fibroblast growth factor inhibit receptor binding." Proceedings of the National Academy of Sciences of the United States of America, 90(1993):
| null |
Basic Fibroblast Growth Factor
|
Basic Fibroblast Growth Factor
|
GGUGAAGGCAACGUAUAGGCAAGCACACUUCACC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
190 pM,
|
Chen and Gold. "Selection of High-Affinity RNA Ligands to Reverse Transcriptase: Inhibition of cDNA Synthesis and RNase H Activity." Journal of Biochemistry, 33(1994)
| null |
Avian Myeloblastosis Virus (a.1.1)
|
Avian Myeloblastosis Virus (AMV)
|
CGUCCCGUGCGCAAAAGUUCUUAGCGCUAGCAGUCCUAGUUGC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.5 nM,
|
(A)Sequence from C Mannironi, et al. "In Vitro Selection of Dopamine RNA Ligands." Biochemistry, 36 (1997): 9726-973. (B) Enzyme-linked assay from H Park and I R Paeng. "Development of direct competitive enzyme-linked aptamer assay for determination of dopamine in serum." Analytica Chimica Acta, 685 (2011): 65-73.
| null |
Dopamine (dopa2/c.4) (ID# 401)
|
Dopamine
|
GGGAAUUCCGCGUGUGCGCCGCGGAAGAGGGAAUAUAGAGGCAGCACAUAGUGAGGCCCUCCUCCC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Small Organic
| null | null |
1.0 pM,
|
Garrett A. Soukup and Ronald R. Breaker. "Engineering precision RNA molecular switches" Proc. Natl. Acad. Sci. 96(1999):3584-3589.
| null |
FMN-induced molecular switch (ID# 395)
|
flavin mononucleotide (FMN)
|
GGGCGACCCCUGAUGAGCCUUAGGAUAUGCUUCGGCAGAAGGACGUCGAAACGGUGAAAGCCGUAGGUUGCCC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Small Organic
| null | null |
na nM,
|
Cox and Ellington. "Automated Selection of Anti-Protein Aptamers." Bioorganic & Medicinal Chemsitry, 9 (2001): 2525-2531/
| null |
Lysozyme (ID# 162)
|
Lysozyme
|
GGGAAUGGAUCCACAUCUACGAAUUCAUCAGGGCUAAAGAGGCAGAGUUACUUAGUUCACUGCAGACUUGACGAAGCUU
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
31 nM,
|
Berezhnoy, A, et al. (2012). Isolation and optimization of murine il-10 receptor blocking oligonucleotide aptamers using high- throughput sequencing. The American Society of Gene & Cell Therapy
| null |
Interleukin 10 (IL-10) (R5A1) (ID# 291)
|
Interleukin -10 (IL-10)
|
GGGCUCAUGCACGUUUGCUCCUGUAAUUGGCGUAUGUAACCCAGGCACCAAACACCCCAGGCCGGGCCAUGAUCCACAUA
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
12 nM,
|
Kim et al. "Generation of Antagonistic RNA Aptamers Specific to Proinflammatory Cytokine Interleukin-32." Bulletin of the Korean Chemical Society, 31 (2010): 3561-3566.
| null |
Interleukin 32 (IL-32) (AC3-3)
|
Interleukin-32
|
GGGUUCACUGCAGACUUGACGAAGCUUCCGGAGAGAAGGGUCAAAGUUGUGCGGGAGUGUGUUGUGGAAUGGAUCCACAUCUACGAAUUC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
78 nM,
|
Kang, H. (2009). Isolation of RNA aptamers targeting Her-2-overexpressing breast cancer cells using cell-selex. Bull. Korean Chem. Soc., 30(8), 182-1831.
| null |
HER-2 (S6)
|
HER-2
|
GGGAGAUACCAGCUUAUUCAAUUUGGAUGGGGAGAUCCGUUGAGUAAGCGGGCGUGUCUCUCUGCCGCCUUGCUAUGGGGAGAUAGUAAGUGCAAUCU
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Cells
| null | null |
94.6 nM,
|
Ylera, Francisco, et al. "Selection of RNA Aptamers to the Alzheimer's Disease Amyloid Peptide." Biochemical and Biophysical Research Communities, 290 (2002): 1583-1588.
| null |
Amyloid Peptide BetaA4(1 40) (B55)
|
Amyloid Peptide BetaA4(1 40)
|
GGGAAUUCGAGCUCGGUACCUUUACCGUAAGGCCUGUCUUCGUUUGACAGCGGCUUGUUGACCCUCACACUUUGUACCUGCUGCCAACUGCAGGCAUGCAAGCUUGG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Peptide
| null | null |
29 nM,
|
P Polo. Selection, characterisation and analytical application of DNA aptamer against the anaphylactic toxic allergen, ?-conglutin, Lup an 1. (Doctoral Thesis). Retrieved from Tesis Doctorals en Xarxa
| null |
Lup an 1 allergen ?-conglutin (SGQ)
|
?-conglutin
|
GGTGGGGGTGG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.58 nM,
|
Development of an Efficient Targeted Cell-SELEX Procedure for DNA Aptamer Reagents Susanne Meyer et al. 2013
| null |
Kit-129
|
CD117
|
GCTCAACGCGGGACGGCTCTCCCATTGAC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
12.21 nM,
|
Yunn N, Koh A, Han S, Lim JH, Park S, et al. (2015) Agonistic Aptamer to the Insulin Receptor Leads to Biased Signaling and Functional Selectivity Through Allosteric Modulation. Nucleic Acids Research 1. doi:10.1093/narlgkv767
| null |
IR-A48
|
Insulin Receptor
|
CGCCTGGNGNNAAGACAACCNCNAGGNCAGGCG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
3.5 nM,
|
Seonghwan, L. (2012). A highly sensitive aptasensor towards plasmodium lactate dehydrogenase for the diagnosis of malaria. Biosensors and Bioelectronics, 35(2012), 291-296.
| null |
Plasmodium vivax lactate dehydrogenase (pL1)
|
Plasmodium vivax lactate dehydrogenase (PvLDH)
|
GTTCGATTGGATTGTGCCGGAAGTGCTGGCTCGAAC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
16.8 nM,
|
Seonghwan, L. (2012). A highly sensitive aptasensor towards plasmodium lactate dehydrogenase for the diagnosis of malaria. Biosensors and Bioelectronics, 35(2012), 291-296.
| null |
Plasmodium falciparum lactate dehydrogenase (pL1)
|
Plasmodium falciparum lactate dehydrogenase (PfLDH)
|
GTTCGATTGGATTGTGCCGGAAGTGCTGGCTCGAAC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
38.7 nM,
|
Seonghwan, L. (2012). A highly sensitive aptasensor towards plasmodium lactate dehydrogenase for the diagnosis of malaria. Biosensors and Bioelectronics, 35(2012), 291-296.
| null |
Plasmodium vivax lactate dehydrogenase (pL2)
|
Plasmodium vivax lactate dehydrogenase (PvLDH)
|
GAACTCATTGGCTGGAGGCGGCAGTACCGCTTGAGTTC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
31.7 nM,
|
Seonghwan, L. (2012). A highly sensitive aptasensor towards plasmodium lactate dehydrogenase for the diagnosis of malaria. Biosensors and Bioelectronics, 35(2012), 291-296.
| null |
Plasmodium falciparum lactate dehydrogenase (pL2)
|
Plasmodium falciparum lactate dehydrogenase (PfLDH)
|
GAACTCATTGGCTGGAGGCGGCAGTACCGCTTGAGTTC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
49.6 nM,
|
(A) D Michalowski et al. Novel bimodular DNA aptamers with guanosine quadruplexes inhibit phylogenetically diverse HIV-1 reverse transcriptases. Nucleic Acid Res. 36(2008): 7124-7135. (B) Y-T Lai and J DeStefano. DNA aptamers to human immunodeficiency virus reverse transcriptase selected by a primer-free SELEX method: characterization and comparison with other aptamers. Nucleic Acid Therapeutics 22(2012): 162-176
| null |
HIV-1 Reverse Transcriptase (R1T)
|
HIV-1 RT
|
CGCCTGATTAGCGATACTCAGCGTTGGGTGGGTGGGTGGG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
1.1 nM,
|
X Tan et al. Molecular beacon aptamers for direct and universal quantitation of recombinant proteins from cell lysates. Anal. Chem. [published online ahead of print August 23, 2012]. doi: 10.1021/ac301764q
| null |
HMBA (aptabeacon)
|
6X His-tag
|
FAMCAGGTTGGTCTGGTTGGGTTGGCTCCTGTGTACGCAACCTG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
~4.2 nM,
|
Selection of DNA Aptamers against Epithelial Cell Adhesion Molecule for Cancer Cell Imaging and Circulating Tumor Cell Capture Yanling Song, Zhi Zhu, Yuan An, Weiting Zhang, Huimin Zhang, Dan Liu, Chundong Yu, Wei Duan, and Chaoyong James Yang Analytical Chemistry 2013 85 (8), 4141-4149 DOI: 10.1021/ac400366b
| null |
Epithelial Cell Adhesion Molecule (EpCAM) SYL3C
|
Cancer Cells
|
CACTACAGAGGTGTCTGTCCCACGTTGTCATGGGGGGTTGGCCTG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Cells
| null | null |
38 nM,
|
Hicke, Brain, et al. "DNA Aptamers Block L-Selectin Function In Vivo Inhibition of Human Lymphocyte Traf?cking in SCID Mic." Journal of Clinical Investigation, 98 (1996): 2688-2692
| null |
L-Selectin (LD201t1)
|
L-Selectin binding to sialyl Lewis X
|
TAGCCAAGGTAACCAGTACAAGGTGCTAAAACGTAATGGCTTCGGCTTAC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
3 nM,
|
Z Kiani et al. In vitro selection and characterization of deoxyribonucleic acid aptamers for digoxin. Analytica Chimica Acta 748(2012): 67-72.
| null |
Digoxin (Truncated D1)
|
Digoxin
|
AGCGAGGGCGGTGTCCAACAGCGGTTTTTTCACGAGGGAGGTTGGCGGTGG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
0.05 nM,
|
Wang, L, et al. (2012). Selection of DNA aptamers that bind four organophosphorus pesticides. Biotechnol Lett, 2012(34), 869-874. doi: 10.1007/s10529-012-0850-6
| null |
Isocarbophos (SS4-54)
|
Isocarbophos
|
AAGCTTTTTTGACTGACTGCAGCGATTCTTGATCGCCACGGTCTGGAAAAAGAT
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Small Organic
| null | null |
0.9 µM,
|
A Graziani et al. High efficiency binding aptamers for a wide range of sepsis 1 bacterial agents. JMB Papers in Press. 2017: JMB16-11004.
| null |
Antibac1
|
peptidoglycan
|
TCGCGGCGAGTCGTCTGGGGACAGGGAGTGCGCTGCTCCCCCCGCATCGTCCTCCC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Other
| null | null |
268.50 nM,
|
Boltz A, Plater B, Hock B, et al. (2011) Bi-specific Aptamers Mediating Tumour Cell Lysis. J Biol Chem 286: 21896-21905
| null |
Fc? receptor III? / CD16? (CLN0020)
|
Fc?rIII? / FcgrIIIa / CD16a
|
GGAGGGAAAAGTTATCAGGCCACTGCGGGGGTCCTATACGTGAGGAAGAAGTGGGCAGGTC
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
22 nM,
|
Kang, Jonghoon, et al. "Combinatorial selection of a single stranded DNA thioaptamer targeting TGF-??1 protein." Bioorganic & Medicinal Chemistry Letters, 18 (2008): 1835-1839.
| null |
TGF-ß1 (T18_1_3)
|
Transforming Growth Factor-ß1 (TGF-ß1)
|
CGCTCGGCTTCACGAGATTCGTGTCGTTGTGTCCTGTACCCGCCTTGACCAGTCACTCTAGAGCATCCGGACTG
|
https://www.iitg.ac.in/proj/aptabase/about.html
|
Protein
| null | null |
94 nM,
|
https://pubmed.ncbi.nlm.nih.gov/1697402/
|
ssRNA
|
CB-42
|
Cibacron Blue 3GA
|
GGGAGAAUUCCCGCGGCAGAAGCCCACCUGGCUUUGAACUCUAUGUUAUUGGGUGGGGGAAACUUAAGAAAACUACCACCCUUCAACAUUACCGCCCUUCAGCCUGCCAGCGCCCUGCAGCCCGGGAAGCUU
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd~600µM, 600000
|
https://pubmed.ncbi.nlm.nih.gov/1697402/
|
ssRNA
|
B4-25
|
Reactive Blue 4
|
GGGAGAAUUCCCGCGGCGUUGGCCCAGGAUAAUAGGACGAAAUCCGAAAAAUCCGUACCCAACAUAGAACCCCCCCAGCGCUCACACGGACGCCCCAUUACGGCUAACCGAACGCCUGCAGCCCGGGAAGCUU
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd<100µM, 100000
|
https://pubmed.ncbi.nlm.nih.gov/2200121/
|
ssRNA
|
wild type
|
T4 DNA polymerase (gp43)
|
GAAUUGUGGUGUUGGCUCCCUAUAGUGAGUCGUAUUAAUAUUCCUUAGUUUUAUAGCCCAAUAACUCAGGCUCUUGAUUGGUUUUCAAUAGAGAUAUAAAAUUCUUUUCAUAG
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 4.8 nM, 4,8
|
https://pubmed.ncbi.nlm.nih.gov/2200121/
|
ssRNA
|
major variant
|
T4 DNA polymerase (gp43)
|
GAAUUGUGGUGUUGGCUCCCUAUAGUGAGUCGUAUUAAUAUUCCUUAGUUUUAUAGCCCAGCAACCUAGGCUCUUGAUUGGUUUUCAAUAGAGAUAUAAAAUUCUUUUCAUAG
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 4.8 nM, 4,8
|
https://pubmed.ncbi.nlm.nih.gov/1741036/
|
ssDNA
|
15 mer (colloquially known as Bock DNA Aptamer)
|
Thrombin (Sigma), Human
|
GGTTGGTGTGGTTGG
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 25-200 nM, 112,5
|
https://pubmed.ncbi.nlm.nih.gov/1741036/
|
ssDNA
|
6 mer (colloquially known as Bock DNA Aptamer)
|
Thrombin (Sigma), Human
|
GGTTGG
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 25-200 nM, 112,5
|
https://pubmed.ncbi.nlm.nih.gov/1379730/
|
ssRNA
|
ligand 1.1
|
Human imunnodeficiency virus type 1 reverse transcriptase (HIV-1-RT)
|
GGGAGCAUCAGACUUUUAAUCUGACAAUCAAGAAUUCCGUUUUCAGUCGGGAAAAACUGAACAAUCUAUGAAAGAAUUUUAUAUCUCUAUUGAAAC
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 5 nM, 5
|
https://pubmed.ncbi.nlm.nih.gov/1379730/
|
ssRNA
|
ligand 1.3a
|
Human imunnodeficiency virus type 1 reverse transcriptase (HIV-1-RT)
|
GGGAGCAUCAGACUUUUAAUCUGACAAUCAAGAAUAUCUUCCGAAGCCGAACGGGAAAACCGGCAUCUAUGAAAGAAUUUUAUCUCUAUUGAAAC
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 5 nM, 5
|
https://pubmed.ncbi.nlm.nih.gov/7504300/
|
ssRNA
|
5A
|
Basic fibroblast growth factor (bFGF)
|
GGGAGCUCAGAAUAAACGCUCAAAUCUCCUCCCGUCGAAGCUAACCUGGCCACUUCGACAUGAGGCCCGGAUCCGGC
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 23 ± 3 nM, 23
|
https://pubmed.ncbi.nlm.nih.gov/7504300/
|
ssRNA
|
7A
|
Basic fibroblast growth factor (bFGF)
|
GGGAGCUCAGAAUAAACGCUCAAUCGGCGAGCUAACCAAGACACUCGCUGCACUUCGACAUGAGGCCCGGAUCCGGC
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 5.0 ± 0.5 nM, 5
|
https://pubmed.ncbi.nlm.nih.gov/7504300/
|
ssRNA
|
13A
|
Basic fibroblast growth factor (bFGF)
|
GGGAGCUCAGAAUAAACGCUCAAACCCGCGGCCUCCGAAGCUAACCAGGACACUUCGACAUGAGGCCCGGAUCCGGC
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 3.2 ± 0.5 nM, 3,2
|
https://pubmed.ncbi.nlm.nih.gov/7504300/
|
ssRNA
|
14A
|
Basic fibroblast growth factor (bFGF)
|
GGGAGCUCAGAAUAAACGCUCAAUGGGUGCUAACCAGGACACACCCACGCUGUUUCGACAUGAGGCCCGGAUCCGGC
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 3.0 ± 0.5 nM, 3
|
https://pubmed.ncbi.nlm.nih.gov/7504300/
|
ssRNA
|
21A
|
Basic fibroblast growth factor (bFGF)
|
GGGAGCUCAGAAUAAACGCUCAAUGGGUGCUUAACCAGGCCACACCCUGCUGUUUCGACAUGAGGCCCGGAUCCGGC
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: 8.1 ± 0.8 nM, 8,1
|
https://pubmed.ncbi.nlm.nih.gov/7504300/
|
ssRNA
|
12A
|
Basic fibroblast growth factor (bFGF)
|
GGGAGAUGCCUGUCGAGCAUGCUGGGGGCAACGCUACAGACAAGUGCACCCAACGUAGCUAAACAGCUUUGUCGACGGG
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: exhibits biphasic binding, 0.51 ± 0.13 nM, 60 ± 52 nM, 0,51
|
https://pubmed.ncbi.nlm.nih.gov/7504300/
|
ssRNA
|
26At
|
Basic fibroblast growth factor (bFGF)
|
GGUGAAGGCAACGUAUAGGCAAGCACACUUCACC
|
https://sites.utexas.edu/aptamerdatabase/
| null | null | null |
Kd: ~0.19 ± 0.02 nM, 0,19
|
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