paragraph_index int64 | sec string | p_has_citation int64 | cites string | citeids list | pmid int64 | cited_id string | sentences string | all_sent_cites list | sent_len int64 | sentence_batch_index int64 | sent_has_citation float64 | qc_fail bool | cited_sentence string | cites_in_sentence list | cln_sentence string | is_cap bool | is_alpha bool | ends_wp bool | cit_qc bool | lgtm bool | __index_level_0__ int64 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12 | DISCUSSION | 1 | 29 | [
"b29",
"b29"
] | 17,090,584 | pmid-15024409|pmid-15024409 | Our results implicate DCL2 in production of 22 nt viral siRNAs. | [
"29",
"29"
] | 63 | 9,600 | 0 | false | Our results implicate DCL2 in production of 22 nt viral siRNAs. | [] | Our results implicate DCL2 in production of 22 nt viral siRNAs. | true | true | true | true | true | 1,528 |
12 | DISCUSSION | 1 | 29 | [
"b29",
"b29"
] | 17,090,584 | pmid-15024409|pmid-15024409 | These species accumulate in wt but not dcl2 plants infected with both DNA viruses studied here. | [
"29",
"29"
] | 95 | 9,601 | 0 | false | These species accumulate in wt but not dcl2 plants infected with both DNA viruses studied here. | [] | These species accumulate in wt but not dcl2 plants infected with both DNA viruses studied here. | true | true | true | true | true | 1,528 |
12 | DISCUSSION | 1 | 29 | [
"b29",
"b29"
] | 17,090,584 | pmid-15024409|pmid-15024409 | Based on the increased accumulation of DCL2-dependent 22 nt siRNA in dcl3, dcl4 and d3d4, DCL2 appears to gain access to substrates normally processed by others DCLs. | [
"29",
"29"
] | 166 | 9,602 | 0 | false | Based on the increased accumulation of DCL2-dependent 22 nt siRNA in dcl3, dcl4 and d3d4, DCL2 appears to gain access to substrates normally processed by others DCLs. | [] | Based on the increased accumulation of DCL2-dependent 22 nt siRNA in dcl3, dcl4 and d3d4, DCL2 appears to gain access to substrates normally processed by others DCLs. | true | true | true | true | true | 1,528 |
12 | DISCUSSION | 1 | 29 | [
"b29",
"b29"
] | 17,090,584 | pmid-15024409|pmid-15024409 | An antiviral role of DCL2 was suggested by Xie et al. | [
"29",
"29"
] | 53 | 9,603 | 0 | false | An antiviral role of DCL2 was suggested by Xie et al. | [] | An antiviral role of DCL2 was suggested by Xie et al. | true | true | true | true | true | 1,528 |
12 | DISCUSSION | 1 | 29 | [
"b29",
"b29"
] | 17,090,584 | pmid-15024409|pmid-15024409 | (29) based on increased susceptibility of dcl2 plants to the RNA carmovirus TCV, which correlates with the absence of TCV-derived siRNAs at the early stage of infection. | [
"29",
"29"
] | 169 | 9,604 | 1 | false | based on increased susceptibility of dcl2 plants to the RNA carmovirus TCV, which correlates with the absence of TCV-derived siRNAs at the early stage of infection. | [
"29"
] | based on increased susceptibility of dcl2 plants to the RNA carmovirus TCV, which correlates with the absence of TCV-derived siRNAs at the early stage of infection. | false | true | true | true | false | 1,528 |
12 | DISCUSSION | 1 | 29 | [
"b29",
"b29"
] | 17,090,584 | pmid-15024409|pmid-15024409 | Nonetheless, infection with RNA viruses including CMV, TuMV (29) and ORMV (this study) did not result in differences of viral titers or siRNA accumulation in dcl2 or other mutants, except dcl4 (this study). | [
"29",
"29"
] | 206 | 9,605 | 1 | false | Nonetheless, infection with RNA viruses including CMV, TuMV and ORMV (this study) did not result in differences of viral titers or siRNA accumulation in dcl2 or other mutants, except dcl4 (this study). | [
"29"
] | Nonetheless, infection with RNA viruses including CMV, TuMV and ORMV (this study) did not result in differences of viral titers or siRNA accumulation in dcl2 or other mutants, except dcl4 (this study). | true | true | true | true | true | 1,528 |
12 | DISCUSSION | 1 | 29 | [
"b29",
"b29"
] | 17,090,584 | pmid-15024409|pmid-15024409 | We did notice, however, that DCL2-dependent 22 nt ORMV siRNAs accumulate in dcl4. | [
"29",
"29"
] | 81 | 9,606 | 0 | false | We did notice, however, that DCL2-dependent 22 nt ORMV siRNAs accumulate in dcl4. | [] | We did notice, however, that DCL2-dependent 22 nt ORMV siRNAs accumulate in dcl4. | true | true | true | true | true | 1,528 |
13 | DISCUSSION | 1 | 30 | [
"b30",
"b31"
] | 17,090,584 | pmid-16741077|pmid-16810317 | Based on their analyses of RNA viruses, Deleris et al. | [
"30",
"31"
] | 54 | 9,607 | 0 | false | Based on their analyses of RNA viruses, Deleris et al. | [] | Based on their analyses of RNA viruses, Deleris et al. | true | true | true | true | true | 1,529 |
13 | DISCUSSION | 1 | 30 | [
"b30",
"b31"
] | 17,090,584 | pmid-16741077|pmid-16810317 | (30) and Bouche et al. | [
"30",
"31"
] | 22 | 9,608 | 1 | false | and Bouche et al. | [
"30"
] | and Bouche et al. | false | true | true | true | false | 1,529 |
13 | DISCUSSION | 1 | 31 | [
"b30",
"b31"
] | 17,090,584 | pmid-16741077|pmid-16810317 | (31) concluded that DCL4 plays a key role in anti-viral defense and RNA-VIGS but, when DCL4 is mutated or inhibited by viral suppression, DCL2 takes over this role. | [
"30",
"31"
] | 164 | 9,609 | 1 | false | concluded that DCL4 plays a key role in anti-viral defense and RNA-VIGS but, when DCL4 is mutated or inhibited by viral suppression, DCL2 takes over this role. | [
"31"
] | concluded that DCL4 plays a key role in anti-viral defense and RNA-VIGS but, when DCL4 is mutated or inhibited by viral suppression, DCL2 takes over this role. | false | true | true | true | false | 1,529 |
13 | DISCUSSION | 1 | 30 | [
"b30",
"b31"
] | 17,090,584 | pmid-16741077|pmid-16810317 | Our results for the RNA tobamovirus confirm such a hierarchical action of DCL4 and DCL2 and further show that DCL3 can also limit viral RNA accumulation. | [
"30",
"31"
] | 153 | 9,610 | 0 | false | Our results for the RNA tobamovirus confirm such a hierarchical action of DCL4 and DCL2 and further show that DCL3 can also limit viral RNA accumulation. | [] | Our results for the RNA tobamovirus confirm such a hierarchical action of DCL4 and DCL2 and further show that DCL3 can also limit viral RNA accumulation. | true | true | true | true | true | 1,529 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | RNA viruses might circumvent complex DCL redundancies by suppressing RNA silencing downstream, at the shared HEN1 step. | [
"19",
"35",
"36",
"7"
] | 119 | 9,611 | 0 | false | RNA viruses might circumvent complex DCL redundancies by suppressing RNA silencing downstream, at the shared HEN1 step. | [] | RNA viruses might circumvent complex DCL redundancies by suppressing RNA silencing downstream, at the shared HEN1 step. | true | true | true | true | true | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | We show that ORMV infection interferes with HEN1-mediated methylation of viral siRNAs and endogenous sRNAs, including miRNAs and ta-siRNAs, but not 24 nt ra-siRNAs | [
"19",
"35",
"36",
"7"
] | 163 | 9,612 | 0 | false | We show that ORMV infection interferes with HEN1-mediated methylation of viral siRNAs and endogenous sRNAs, including miRNAs and ta-siRNAs, but not 24 nt ra-siRNAs | [] | We show that ORMV infection interferes with HEN1-mediated methylation of viral siRNAs and endogenous sRNAs, including miRNAs and ta-siRNAs, but not 24 nt ra-siRNAs | true | true | false | true | false | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | [this work and (19)]. | [
"19",
"35",
"36",
"7"
] | 21 | 9,613 | 0 | false | . | [
"this work and (19)"
] | . | false | false | true | true | false | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | Furthermore, miRNA* and ta-siRNA* strands over-accumulate during ORMV infection. | [
"19",
"35",
"36",
"7"
] | 80 | 9,614 | 0 | false | Furthermore, miRNA* and ta-siRNA* strands over-accumulate during ORMV infection. | [] | Furthermore, miRNA* and ta-siRNA* strands over-accumulate during ORMV infection. | true | true | true | true | true | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | The tobamovirus factor responsible for interference with HEN1 remains to be identified. | [
"19",
"35",
"36",
"7"
] | 87 | 9,615 | 0 | false | The tobamovirus factor responsible for interference with HEN1 remains to be identified. | [] | The tobamovirus factor responsible for interference with HEN1 remains to be identified. | true | true | true | true | true | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | Mechanistically, one of the viral proteins might bind sRNA duplexes, as was demonstrated for several viral suppressors (35,36), or inactivate HEN1 directly through a protein-protein interaction. | [
"19",
"35",
"36",
"7"
] | 194 | 9,616 | 0 | false | Mechanistically, one of the viral proteins might bind sRNA duplexes, as was demonstrated for several viral suppressors, or inactivate HEN1 directly through a protein-protein interaction. | [
"35,36"
] | Mechanistically, one of the viral proteins might bind sRNA duplexes, as was demonstrated for several viral suppressors, or inactivate HEN1 directly through a protein-protein interaction. | true | true | true | true | true | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | Unmethylated sRNA duplexes appear to undergo partial degradation at their 2 nt overhangs that results in accumulation of shorter-sized sRNAs of both viral and endogenous origin. | [
"19",
"35",
"36",
"7"
] | 177 | 9,617 | 0 | false | Unmethylated sRNA duplexes appear to undergo partial degradation at their 2 nt overhangs that results in accumulation of shorter-sized sRNAs of both viral and endogenous origin. | [] | Unmethylated sRNA duplexes appear to undergo partial degradation at their 2 nt overhangs that results in accumulation of shorter-sized sRNAs of both viral and endogenous origin. | true | true | true | true | true | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | Additionally, they are also subject to 3′-end oligouridylation observed at least for the miR173/miR173* duplex (Figure 6C). | [
"19",
"35",
"36",
"7"
] | 123 | 9,618 | 0 | false | Additionally, they are also subject to 3′-end oligouridylation observed at least for the miR173/miR173* duplex (Figure 6C). | [] | Additionally, they are also subject to 3′-end oligouridylation observed at least for the miR173/miR173* duplex (Figure 6C). | true | true | true | true | true | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | In both cases, assembly of RISC and the spread of silencing might be compromised. | [
"19",
"35",
"36",
"7"
] | 81 | 9,619 | 0 | false | In both cases, assembly of RISC and the spread of silencing might be compromised. | [] | In both cases, assembly of RISC and the spread of silencing might be compromised. | true | true | true | true | true | 1,530 |
14 | DISCUSSION | 1 | 7 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | The proposed RISC assembly defect is supported by Baumberger and Baulcombe (7) who found that siRNAs derived from three RNA viruses (including another tobamovirus) are not associated with the RISC slicer component AGO1. | [
"19",
"35",
"36",
"7"
] | 219 | 9,620 | 1 | false | The proposed RISC assembly defect is supported by Baumberger and Baulcombe who found that siRNAs derived from three RNA viruses (including another tobamovirus) are not associated with the RISC slicer component AGO1. | [
"7"
] | The proposed RISC assembly defect is supported by Baumberger and Baulcombe who found that siRNAs derived from three RNA viruses (including another tobamovirus) are not associated with the RISC slicer component AGO1. | true | true | true | true | true | 1,530 |
14 | DISCUSSION | 1 | 19 | [
"b19",
"b35",
"b36",
"b7"
] | 17,090,584 | pmid-16421273|pmid-16724105|pmid-16731914|pmid-16081530 | It would be interesting to test whether other viruses from the AGO1 study interfere with HEN1. | [
"19",
"35",
"36",
"7"
] | 94 | 9,621 | 0 | false | It would be interesting to test whether other viruses from the AGO1 study interfere with HEN1. | [] | It would be interesting to test whether other viruses from the AGO1 study interfere with HEN1. | true | true | true | true | true | 1,530 |
15 | DISCUSSION | 1 | 35 | [
"b35",
"b38",
"b58"
] | 17,090,584 | pmid-16724105|pmid-15131083|pmid-16678167 | When expressed as transgenes in Arabidopsis, silencing suppressors including potyviral HC-Pro, tombusviral p19 and closteroviral p21, known to bind miRNA and siRNA duplexes in vitro (35), increase accumulation of miRNA* strands (38) and prevent miRNA methylation by HEN1 (58). | [
"35",
"38",
"58"
] | 276 | 9,622 | 1 | false | When expressed as transgenes in Arabidopsis, silencing suppressors including potyviral HC-Pro, tombusviral p19 and closteroviral p21, known to bind miRNA and siRNA duplexes in vitro, increase accumulation of miRNA* strands and prevent miRNA methylation by HEN1. | [
"35",
"38",
"58"
] | When expressed as transgenes in Arabidopsis, silencing suppressors including potyviral HC-Pro, tombusviral p19 and closteroviral p21, known to bind miRNA and siRNA duplexes in vitro, increase accumulation of miRNA* strands and prevent miRNA methylation by HEN1. | true | true | true | true | true | 1,531 |
15 | DISCUSSION | 1 | 35 | [
"b35",
"b38",
"b58"
] | 17,090,584 | pmid-16724105|pmid-15131083|pmid-16678167 | If these suppressors also interfere with HEN1 activity during viral infection, then targeting HEN1 would be a general silencing suppression strategy. | [
"35",
"38",
"58"
] | 149 | 9,623 | 0 | false | If these suppressors also interfere with HEN1 activity during viral infection, then targeting HEN1 would be a general silencing suppression strategy. | [] | If these suppressors also interfere with HEN1 activity during viral infection, then targeting HEN1 would be a general silencing suppression strategy. | true | true | true | true | true | 1,531 |
16 | DISCUSSION | 0 | null | null | 17,090,584 | null | Additionally, our results suggest that the pararetrovirus CaMV has evolved a suppressor that stabilizes dsRNA products of RDR6. | null | 127 | 9,624 | 0 | false | null | null | Additionally, our results suggest that the pararetrovirus CaMV has evolved a suppressor that stabilizes dsRNA products of RDR6. | true | true | true | true | true | 1,532 |
16 | DISCUSSION | 0 | null | null | 17,090,584 | null | Indeed, several abundant long dsRNA precursors of ta-siRNAs accumulate in CaMV-infected plants. | null | 95 | 9,625 | 0 | false | null | null | Indeed, several abundant long dsRNA precursors of ta-siRNAs accumulate in CaMV-infected plants. | true | true | true | true | true | 1,532 |
16 | DISCUSSION | 0 | null | null | 17,090,584 | null | Potentially, the putative suppressor impairs the processing of these long dsRNAs by DCL4. | null | 89 | 9,626 | 0 | false | null | null | Potentially, the putative suppressor impairs the processing of these long dsRNAs by DCL4. | true | true | true | true | true | 1,532 |
16 | DISCUSSION | 0 | null | null | 17,090,584 | null | Suppression of DCL4 in CaMV-infected tissues would be consistent with our result that the major fraction of 21 nt CaMV siRNAs depends on DCL1; during CaLCuV and ORMV infection, DCL4 performs this function instead. | null | 213 | 9,627 | 0 | false | null | null | Suppression of DCL4 in CaMV-infected tissues would be consistent with our result that the major fraction of 21 nt CaMV siRNAs depends on DCL1; during CaLCuV and ORMV infection, DCL4 performs this function instead. | true | true | true | true | true | 1,532 |
16 | DISCUSSION | 0 | null | null | 17,090,584 | null | No silencing suppressor encoded by plant pararetroviruses has been reported so far. | null | 83 | 9,628 | 0 | false | null | null | No silencing suppressor encoded by plant pararetroviruses has been reported so far. | true | true | true | true | true | 1,532 |
16 | DISCUSSION | 0 | null | null | 17,090,584 | null | Our findings provide the basis for identifying this factor and for using CaMV as a tool to study ta-siRNA biogenesis. | null | 117 | 9,629 | 0 | false | null | null | Our findings provide the basis for identifying this factor and for using CaMV as a tool to study ta-siRNA biogenesis. | true | true | true | true | true | 1,532 |
17 | DISCUSSION | 1 | 59 | [
"b59",
"b60",
"b60"
] | 17,090,584 | pmid-15681452|pmid-16006510|pmid-16006510 | The silencing suppression strategies we propose for CaMV and ORMV do not appear to be exploited by CaLCuV. | [
"59",
"60",
"60"
] | 106 | 9,630 | 0 | false | The silencing suppression strategies we propose for CaMV and ORMV do not appear to be exploited by CaLCuV. | [] | The silencing suppression strategies we propose for CaMV and ORMV do not appear to be exploited by CaLCuV. | true | true | true | true | true | 1,533 |
17 | DISCUSSION | 1 | 59 | [
"b59",
"b60",
"b60"
] | 17,090,584 | pmid-15681452|pmid-16006510|pmid-16006510 | DCL4- and HEN1-dependent production of methylated 21 nt viral siRNAs is not impaired in CaLCuV infected Arabidopsis. | [
"59",
"60",
"60"
] | 116 | 9,631 | 0 | false | DCL4- and HEN1-dependent production of methylated 21 nt viral siRNAs is not impaired in CaLCuV infected Arabidopsis. | [] | DCL4- and HEN1-dependent production of methylated 21 nt viral siRNAs is not impaired in CaLCuV infected Arabidopsis. | true | true | true | true | true | 1,533 |
17 | DISCUSSION | 1 | 59 | [
"b59",
"b60",
"b60"
] | 17,090,584 | pmid-15681452|pmid-16006510|pmid-16006510 | Geminiviruses encode at least two types of silencing suppressor proteins, AC2 and AC4 (59,60). | [
"59",
"60",
"60"
] | 94 | 9,632 | 0 | false | Geminiviruses encode at least two types of silencing suppressor proteins, AC2 and AC4. | [
"59,60"
] | Geminiviruses encode at least two types of silencing suppressor proteins, AC2 and AC4. | true | true | true | true | true | 1,533 |
17 | DISCUSSION | 1 | 60 | [
"b59",
"b60",
"b60"
] | 17,090,584 | pmid-15681452|pmid-16006510|pmid-16006510 | The latter specifically binds single-stranded 21 nt sRNA in vitro and miRNA in vivo (60). | [
"59",
"60",
"60"
] | 89 | 9,633 | 1 | false | The latter specifically binds single-stranded 21 nt sRNA in vitro and miRNA in vivo. | [
"60"
] | The latter specifically binds single-stranded 21 nt sRNA in vitro and miRNA in vivo. | true | true | true | true | true | 1,533 |
17 | DISCUSSION | 1 | 59 | [
"b59",
"b60",
"b60"
] | 17,090,584 | pmid-15681452|pmid-16006510|pmid-16006510 | Since VIGS initiated by CaLCuV::Chl spreads efficiently into emerging leaves via the action of DCL4, HEN1 and RDR6, geminivirus suppressors of silencing might act downstream of methylated 21 nt siRNA production. | [
"59",
"60",
"60"
] | 211 | 9,634 | 0 | false | Since VIGS initiated by CaLCuV::Chl spreads efficiently into emerging leaves via the action of DCL4, HEN1 and RDR6, geminivirus suppressors of silencing might act downstream of methylated 21 nt siRNA production. | [] | Since VIGS initiated by CaLCuV::Chl spreads efficiently into emerging leaves via the action of DCL4, HEN1 and RDR6, geminivirus suppressors of silencing might act downstream of methylated 21 nt siRNA production. | true | true | true | true | true | 1,533 |
0 | INTRODUCTION | 1 | 1 | [
"b1",
"b4",
"b5",
"b6"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | Chromosomal DNA is exposed to various DNA-damaging agents and sustains damage that induces genomic instability. | [
"1",
"4",
"5",
"6"
] | 111 | 9,635 | 0 | false | Chromosomal DNA is exposed to various DNA-damaging agents and sustains damage that induces genomic instability. | [] | Chromosomal DNA is exposed to various DNA-damaging agents and sustains damage that induces genomic instability. | true | true | true | true | true | 1,534 |
0 | INTRODUCTION | 1 | 1 | [
"b1",
"b4",
"b5",
"b6"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | A double-strand break (DSB) is caused by ionizing radiation, cross-linking reagents, oxidative stress and DNA replication failure. | [
"1",
"4",
"5",
"6"
] | 130 | 9,636 | 0 | false | A double-strand break (DSB) is caused by ionizing radiation, cross-linking reagents, oxidative stress and DNA replication failure. | [] | A double-strand break (DSB) is caused by ionizing radiation, cross-linking reagents, oxidative stress and DNA replication failure. | true | true | true | true | true | 1,534 |
0 | INTRODUCTION | 1 | 1 | [
"b1",
"b4",
"b5",
"b6"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | If the DSB is left unrepaired, then cell death occurs (1–4). | [
"1",
"4",
"5",
"6"
] | 60 | 9,637 | 0 | false | If the DSB is left unrepaired, then cell death occurs. | [
"1–4"
] | If the DSB is left unrepaired, then cell death occurs. | true | true | true | true | true | 1,534 |
0 | INTRODUCTION | 1 | 1 | [
"b1",
"b4",
"b5",
"b6"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | Homologous recombination is one of the major DSB repair pathways. | [
"1",
"4",
"5",
"6"
] | 65 | 9,638 | 0 | false | Homologous recombination is one of the major DSB repair pathways. | [] | Homologous recombination is one of the major DSB repair pathways. | true | true | true | true | true | 1,534 |
0 | INTRODUCTION | 1 | 1 | [
"b1",
"b4",
"b5",
"b6"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | This repair pathway is essentially error-free, since a homologous region of the undamaged sister chromatid is used as the template for repair. | [
"1",
"4",
"5",
"6"
] | 142 | 9,639 | 0 | false | This repair pathway is essentially error-free, since a homologous region of the undamaged sister chromatid is used as the template for repair. | [] | This repair pathway is essentially error-free, since a homologous region of the undamaged sister chromatid is used as the template for repair. | true | true | true | true | true | 1,534 |
0 | INTRODUCTION | 1 | 1 | [
"b1",
"b4",
"b5",
"b6"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | In contrast to the mitotic DSB repair pathway, meiotic cell division involves homologous recombination between homologous chromosomes, but not between sister chromatids. | [
"1",
"4",
"5",
"6"
] | 169 | 9,640 | 0 | false | In contrast to the mitotic DSB repair pathway, meiotic cell division involves homologous recombination between homologous chromosomes, but not between sister chromatids. | [] | In contrast to the mitotic DSB repair pathway, meiotic cell division involves homologous recombination between homologous chromosomes, but not between sister chromatids. | true | true | true | true | true | 1,534 |
0 | INTRODUCTION | 1 | 1 | [
"b1",
"b4",
"b5",
"b6"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | This preferential recombination between homologous chromosomes is initiated by the formation of a programmed DSB and ensures correct chromosomal segregation at meiosis I through the formation of chiasmata, which physically connect homologous chromosomes (5,6). | [
"1",
"4",
"5",
"6"
] | 260 | 9,641 | 0 | false | This preferential recombination between homologous chromosomes is initiated by the formation of a programmed DSB and ensures correct chromosomal segregation at meiosis I through the formation of chiasmata, which physically connect homologous chromosomes. | [
"5,6"
] | This preferential recombination between homologous chromosomes is initiated by the formation of a programmed DSB and ensures correct chromosomal segregation at meiosis I through the formation of chiasmata, which physically connect homologous chromosomes. | true | true | true | true | true | 1,534 |
0 | INTRODUCTION | 1 | 1 | [
"b1",
"b4",
"b5",
"b6"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | Thus, homologous recombination is important to maintain the integrity of the chromosome in both mitotic and meiotic cells. | [
"1",
"4",
"5",
"6"
] | 122 | 9,642 | 0 | false | Thus, homologous recombination is important to maintain the integrity of the chromosome in both mitotic and meiotic cells. | [] | Thus, homologous recombination is important to maintain the integrity of the chromosome in both mitotic and meiotic cells. | true | true | true | true | true | 1,534 |
1 | INTRODUCTION | 1 | 7 | [
"b7",
"b12",
"b13",
"b16",
"b17",
"b22",
"b23",
"b24"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | In homologous recombination, a single-stranded DNA (ssDNA) tail, produced at the DSB site, is incorporated into a nucleoprotein complex called the presynaptic filament. | [
"7",
"12",
"13",
"16",
"17",
"22",
"23",
"24"
] | 168 | 9,643 | 0 | false | In homologous recombination, a single-stranded DNA (ssDNA) tail, produced at the DSB site, is incorporated into a nucleoprotein complex called the presynaptic filament. | [] | In homologous recombination, a single-stranded DNA (ssDNA) tail, produced at the DSB site, is incorporated into a nucleoprotein complex called the presynaptic filament. | true | true | true | true | true | 1,535 |
1 | INTRODUCTION | 1 | 7 | [
"b7",
"b12",
"b13",
"b16",
"b17",
"b22",
"b23",
"b24"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | This presynaptic filament catalyzes homologous pairing and strand exchange with an intact homologous region of the double-stranded DNA (dsDNA) molecule. | [
"7",
"12",
"13",
"16",
"17",
"22",
"23",
"24"
] | 152 | 9,644 | 0 | false | This presynaptic filament catalyzes homologous pairing and strand exchange with an intact homologous region of the double-stranded DNA (dsDNA) molecule. | [] | This presynaptic filament catalyzes homologous pairing and strand exchange with an intact homologous region of the double-stranded DNA (dsDNA) molecule. | true | true | true | true | true | 1,535 |
1 | INTRODUCTION | 1 | 7 | [
"b7",
"b12",
"b13",
"b16",
"b17",
"b22",
"b23",
"b24"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | The bacterial RecA protein is known to form helical presynaptic filaments and to play central roles in homologous recombination (7–12). | [
"7",
"12",
"13",
"16",
"17",
"22",
"23",
"24"
] | 135 | 9,645 | 0 | false | The bacterial RecA protein is known to form helical presynaptic filaments and to play central roles in homologous recombination. | [
"7–12"
] | The bacterial RecA protein is known to form helical presynaptic filaments and to play central roles in homologous recombination. | true | true | true | true | true | 1,535 |
1 | INTRODUCTION | 1 | 7 | [
"b7",
"b12",
"b13",
"b16",
"b17",
"b22",
"b23",
"b24"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | In eukaryotes, two homologs of RecA, the Rad51 and Dmc1 proteins, which are conserved from yeast to human, are assumed to fulfill this role. | [
"7",
"12",
"13",
"16",
"17",
"22",
"23",
"24"
] | 140 | 9,646 | 0 | false | In eukaryotes, two homologs of RecA, the Rad51 and Dmc1 proteins, which are conserved from yeast to human, are assumed to fulfill this role. | [] | In eukaryotes, two homologs of RecA, the Rad51 and Dmc1 proteins, which are conserved from yeast to human, are assumed to fulfill this role. | true | true | true | true | true | 1,535 |
1 | INTRODUCTION | 1 | 7 | [
"b7",
"b12",
"b13",
"b16",
"b17",
"b22",
"b23",
"b24"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | Rad51 is expressed in both meiotic and mitotic cells, whereas the expression of Dmc1 is restricted to meiotic cells (13–16). | [
"7",
"12",
"13",
"16",
"17",
"22",
"23",
"24"
] | 124 | 9,647 | 0 | false | Rad51 is expressed in both meiotic and mitotic cells, whereas the expression of Dmc1 is restricted to meiotic cells. | [
"13–16"
] | Rad51 is expressed in both meiotic and mitotic cells, whereas the expression of Dmc1 is restricted to meiotic cells. | true | true | true | true | true | 1,535 |
1 | INTRODUCTION | 1 | 7 | [
"b7",
"b12",
"b13",
"b16",
"b17",
"b22",
"b23",
"b24"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | Although previous biochemical studies demonstrated that Rad51 and Dmc1 have recombinational activities similar to those of RecA (17–22), other studies have also revealed that many ancillary factors, such as replication protein A (RPA), Rad52 and Rad54, significantly affect the activities of Rad51 and Dmc1 (23,24). | [
"7",
"12",
"13",
"16",
"17",
"22",
"23",
"24"
] | 315 | 9,648 | 0 | false | Although previous biochemical studies demonstrated that Rad51 and Dmc1 have recombinational activities similar to those of RecA, other studies have also revealed that many ancillary factors, such as replication protein A (RPA), Rad52 and Rad54, significantly affect the activities of Rad51 and Dmc1. | [
"17–22",
"23,24"
] | Although previous biochemical studies demonstrated that Rad51 and Dmc1 have recombinational activities similar to those of RecA, other studies have also revealed that many ancillary factors, such as replication protein A (RPA), Rad52 and Rad54, significantly affect the activities of Rad51 and Dmc1. | true | true | true | true | true | 1,535 |
2 | INTRODUCTION | 1 | 25 | [
"b25",
"b31",
"b32",
"b33",
"b34",
"b35",
"b37"
] | 16,945,962 | pmid-7651832|pmid-15105430|pmid-9108475|pmid-10209103|pmid-11030336|pmid-9590697|pmid-12453424|pmid-16862129|pmid-16818238 | Rad54 is a member of the SWI2/SNF2 family of proteins, which have DNA-dependent ATPase activities and are involved in chromatin remodeling (25–31). | [
"25",
"31",
"32",
"33",
"34",
"35",
"37"
] | 147 | 9,649 | 0 | false | Rad54 is a member of the SWI2/SNF2 family of proteins, which have DNA-dependent ATPase activities and are involved in chromatin remodeling. | [
"25–31"
] | Rad54 is a member of the SWI2/SNF2 family of proteins, which have DNA-dependent ATPase activities and are involved in chromatin remodeling. | true | true | true | true | true | 1,536 |
2 | INTRODUCTION | 1 | 32 | [
"b25",
"b31",
"b32",
"b33",
"b34",
"b35",
"b37"
] | 16,945,962 | pmid-7651832|pmid-15105430|pmid-9108475|pmid-10209103|pmid-11030336|pmid-9590697|pmid-12453424|pmid-16862129|pmid-16818238 | Genetic studies revealed that Rad54-deficient cells are sensitive to DNA-damaging agents, such as ionizing radiation, methyl methanesulfonate (MMS) and mitomycin C (32). | [
"25",
"31",
"32",
"33",
"34",
"35",
"37"
] | 169 | 9,650 | 1 | false | Genetic studies revealed that Rad54-deficient cells are sensitive to DNA-damaging agents, such as ionizing radiation, methyl methanesulfonate (MMS) and mitomycin C. | [
"32"
] | Genetic studies revealed that Rad54-deficient cells are sensitive to DNA-damaging agents, such as ionizing radiation, methyl methanesulfonate (MMS) and mitomycin C. | true | true | true | true | true | 1,536 |
2 | INTRODUCTION | 1 | 25 | [
"b25",
"b31",
"b32",
"b33",
"b34",
"b35",
"b37"
] | 16,945,962 | pmid-7651832|pmid-15105430|pmid-9108475|pmid-10209103|pmid-11030336|pmid-9590697|pmid-12453424|pmid-16862129|pmid-16818238 | Rad54 utilizes the free energy from ATP hydrolysis to generate superhelical torsion into dsDNA by translocating on the DNA (33,34). | [
"25",
"31",
"32",
"33",
"34",
"35",
"37"
] | 131 | 9,651 | 0 | false | Rad54 utilizes the free energy from ATP hydrolysis to generate superhelical torsion into dsDNA by translocating on the DNA. | [
"33,34"
] | Rad54 utilizes the free energy from ATP hydrolysis to generate superhelical torsion into dsDNA by translocating on the DNA. | true | true | true | true | true | 1,536 |
2 | INTRODUCTION | 1 | 25 | [
"b25",
"b31",
"b32",
"b33",
"b34",
"b35",
"b37"
] | 16,945,962 | pmid-7651832|pmid-15105430|pmid-9108475|pmid-10209103|pmid-11030336|pmid-9590697|pmid-12453424|pmid-16862129|pmid-16818238 | Furthermore, yeast Rad54 promotes the assembly and disassembly of the Rad51 nucleoprotein filament, and both yeast and human Rad54 stimulate the Rad51-mediated homologous pairing activity by directly binding to Rad51 (35–37). | [
"25",
"31",
"32",
"33",
"34",
"35",
"37"
] | 225 | 9,652 | 0 | false | Furthermore, yeast Rad54 promotes the assembly and disassembly of the Rad51 nucleoprotein filament, and both yeast and human Rad54 stimulate the Rad51-mediated homologous pairing activity by directly binding to Rad51. | [
"35–37"
] | Furthermore, yeast Rad54 promotes the assembly and disassembly of the Rad51 nucleoprotein filament, and both yeast and human Rad54 stimulate the Rad51-mediated homologous pairing activity by directly binding to Rad51. | true | true | true | true | true | 1,536 |
3 | INTRODUCTION | 1 | 22 | [
"b22",
"b38",
"b39",
"b40",
"b41",
"b41",
"b41"
] | 16,945,962 | pmid-15164066|pmid-16428451|pmid-11884632|pmid-10362364|pmid-11782437|pmid-11782437|pmid-11782437 | Recent studies showed that the human Rad54B protein, a homolog of Rad54, interacts with the human Rad51and Dmc1 proteins, and stimulates the homologous pairing activity mediated by these proteins (22,38). | [
"22",
"38",
"39",
"40",
"41",
"41",
"41"
] | 204 | 9,653 | 0 | false | Recent studies showed that the human Rad54B protein, a homolog of Rad54, interacts with the human Rad51and Dmc1 proteins, and stimulates the homologous pairing activity mediated by these proteins. | [
"22,38"
] | Recent studies showed that the human Rad54B protein, a homolog of Rad54, interacts with the human Rad51and Dmc1 proteins, and stimulates the homologous pairing activity mediated by these proteins. | true | true | true | true | true | 1,537 |
3 | INTRODUCTION | 1 | 39 | [
"b22",
"b38",
"b39",
"b40",
"b41",
"b41",
"b41"
] | 16,945,962 | pmid-15164066|pmid-16428451|pmid-11884632|pmid-10362364|pmid-11782437|pmid-11782437|pmid-11782437 | Similar to Rad54, human Rad54B is a DNA-dependent ATPase (39) and is expressed in both mitotic and meiotic cells (40). | [
"22",
"38",
"39",
"40",
"41",
"41",
"41"
] | 118 | 9,654 | 1 | false | Similar to Rad54, human Rad54B is a DNA-dependent ATPase and is expressed in both mitotic and meiotic cells. | [
"39",
"40"
] | Similar to Rad54, human Rad54B is a DNA-dependent ATPase and is expressed in both mitotic and meiotic cells. | true | true | true | true | true | 1,537 |
3 | INTRODUCTION | 1 | 41 | [
"b22",
"b38",
"b39",
"b40",
"b41",
"b41",
"b41"
] | 16,945,962 | pmid-15164066|pmid-16428451|pmid-11884632|pmid-10362364|pmid-11782437|pmid-11782437|pmid-11782437 | However, genetic studies revealed that human Rad54B-deficient cells are not overly sensitive to ionizing radiation, MMS and cisplatin (41). | [
"22",
"38",
"39",
"40",
"41",
"41",
"41"
] | 139 | 9,655 | 1 | false | However, genetic studies revealed that human Rad54B-deficient cells are not overly sensitive to ionizing radiation, MMS and cisplatin. | [
"41"
] | However, genetic studies revealed that human Rad54B-deficient cells are not overly sensitive to ionizing radiation, MMS and cisplatin. | true | true | true | true | true | 1,537 |
3 | INTRODUCTION | 1 | 41 | [
"b22",
"b38",
"b39",
"b40",
"b41",
"b41",
"b41"
] | 16,945,962 | pmid-15164066|pmid-16428451|pmid-11884632|pmid-10362364|pmid-11782437|pmid-11782437|pmid-11782437 | Furthermore, the human Rad54B-deficient cells are also proficient in mitotic sister chromatid exchange (41). | [
"22",
"38",
"39",
"40",
"41",
"41",
"41"
] | 108 | 9,656 | 1 | false | Furthermore, the human Rad54B-deficient cells are also proficient in mitotic sister chromatid exchange. | [
"41"
] | Furthermore, the human Rad54B-deficient cells are also proficient in mitotic sister chromatid exchange. | true | true | true | true | true | 1,537 |
3 | INTRODUCTION | 1 | 41 | [
"b22",
"b38",
"b39",
"b40",
"b41",
"b41",
"b41"
] | 16,945,962 | pmid-15164066|pmid-16428451|pmid-11884632|pmid-10362364|pmid-11782437|pmid-11782437|pmid-11782437 | On the other hand, a severe reduction in targeted integration frequency was detected in the Rad54B-deficient cells (41). | [
"22",
"38",
"39",
"40",
"41",
"41",
"41"
] | 120 | 9,657 | 1 | false | On the other hand, a severe reduction in targeted integration frequency was detected in the Rad54B-deficient cells. | [
"41"
] | On the other hand, a severe reduction in targeted integration frequency was detected in the Rad54B-deficient cells. | true | true | true | true | true | 1,537 |
3 | INTRODUCTION | 1 | 22 | [
"b22",
"b38",
"b39",
"b40",
"b41",
"b41",
"b41"
] | 16,945,962 | pmid-15164066|pmid-16428451|pmid-11884632|pmid-10362364|pmid-11782437|pmid-11782437|pmid-11782437 | These characteristics are different from those of Rad54, indicating that Rad54B may have a unique role in homologous recombination. | [
"22",
"38",
"39",
"40",
"41",
"41",
"41"
] | 131 | 9,658 | 0 | false | These characteristics are different from those of Rad54, indicating that Rad54B may have a unique role in homologous recombination. | [] | These characteristics are different from those of Rad54, indicating that Rad54B may have a unique role in homologous recombination. | true | true | true | true | true | 1,537 |
4 | INTRODUCTION | 0 | null | null | 16,945,962 | null | To understand the function of Rad54B in homologous recombination, in the present study, we purified the human Rad54B protein, which was overexpressed in insect cells and biochemically characterized it. | null | 201 | 9,659 | 0 | false | null | null | To understand the function of Rad54B in homologous recombination, in the present study, we purified the human Rad54B protein, which was overexpressed in insect cells and biochemically characterized it. | true | true | true | true | true | 1,538 |
4 | INTRODUCTION | 0 | null | null | 16,945,962 | null | The purified Rad54B protein bound to the ATPase domain of Dmc1. | null | 63 | 9,660 | 0 | false | null | null | The purified Rad54B protein bound to the ATPase domain of Dmc1. | true | true | true | true | true | 1,538 |
4 | INTRODUCTION | 0 | null | null | 16,945,962 | null | Furthermore, Rad54B stimulated the DNA strand exchange mediated by Dmc1 and stabilized the Dmc1–ssDNA complex. | null | 110 | 9,661 | 0 | false | null | null | Furthermore, Rad54B stimulated the DNA strand exchange mediated by Dmc1 and stabilized the Dmc1–ssDNA complex. | true | true | true | true | true | 1,538 |
4 | INTRODUCTION | 0 | null | null | 16,945,962 | null | Therefore, Rad54B may stimulate the Dmc1-mediated strand exchange by stabilizing the Dmc1–ssDNA nucleoprotein filament during homologous recombination. | null | 151 | 9,662 | 0 | false | null | null | Therefore, Rad54B may stimulate the Dmc1-mediated strand exchange by stabilizing the Dmc1–ssDNA nucleoprotein filament during homologous recombination. | true | true | true | true | true | 1,538 |
0 | DISCUSSION | 1 | 54 | [
"b54",
"b55",
"b22",
"b38"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | The yeast and human Rad54 proteins stimulate strand exchange by Rad51 (54,55), but, thus far, the activation of Dmc1-mediated strand exchange by the Rad54 homologs has not been reported. | [
"54",
"55",
"22",
"38"
] | 186 | 9,663 | 0 | false | The yeast and human Rad54 proteins stimulate strand exchange by Rad51, but, thus far, the activation of Dmc1-mediated strand exchange by the Rad54 homologs has not been reported. | [
"54,55"
] | The yeast and human Rad54 proteins stimulate strand exchange by Rad51, but, thus far, the activation of Dmc1-mediated strand exchange by the Rad54 homologs has not been reported. | true | true | true | true | true | 1,539 |
0 | DISCUSSION | 1 | 54 | [
"b54",
"b55",
"b22",
"b38"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | The present findings suggest that the human Rad54B protein stimulates the Dmc1-mediated strand exchange, probably through the stabilization of the presynaptic filament formed by ssDNA and Dmc1. | [
"54",
"55",
"22",
"38"
] | 193 | 9,664 | 0 | false | The present findings suggest that the human Rad54B protein stimulates the Dmc1-mediated strand exchange, probably through the stabilization of the presynaptic filament formed by ssDNA and Dmc1. | [] | The present findings suggest that the human Rad54B protein stimulates the Dmc1-mediated strand exchange, probably through the stabilization of the presynaptic filament formed by ssDNA and Dmc1. | true | true | true | true | true | 1,539 |
0 | DISCUSSION | 1 | 54 | [
"b54",
"b55",
"b22",
"b38"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | Recent studies have shown that Rad54B enhances D-loop formation by Dmc1 and Rad51 (22,38). | [
"54",
"55",
"22",
"38"
] | 90 | 9,665 | 0 | false | Recent studies have shown that Rad54B enhances D-loop formation by Dmc1 and Rad51. | [
"22,38"
] | Recent studies have shown that Rad54B enhances D-loop formation by Dmc1 and Rad51. | true | true | true | true | true | 1,539 |
0 | DISCUSSION | 1 | 54 | [
"b54",
"b55",
"b22",
"b38"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | Taken together, Rad54B assists Dmc1 in the initial strand invasion step (homologous pairing), as well as in the extension of the heteroduplex region (strand exchange). | [
"54",
"55",
"22",
"38"
] | 167 | 9,666 | 0 | false | Taken together, Rad54B assists Dmc1 in the initial strand invasion step (homologous pairing), as well as in the extension of the heteroduplex region (strand exchange). | [] | Taken together, Rad54B assists Dmc1 in the initial strand invasion step (homologous pairing), as well as in the extension of the heteroduplex region (strand exchange). | true | true | true | true | true | 1,539 |
0 | DISCUSSION | 1 | 54 | [
"b54",
"b55",
"b22",
"b38"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | To stabilize the Dmc1–ssDNA complex, catalytic amounts of Rad54B were sufficient. | [
"54",
"55",
"22",
"38"
] | 81 | 9,667 | 0 | false | To stabilize the Dmc1–ssDNA complex, catalytic amounts of Rad54B were sufficient. | [] | To stabilize the Dmc1–ssDNA complex, catalytic amounts of Rad54B were sufficient. | true | true | true | true | true | 1,539 |
0 | DISCUSSION | 1 | 54 | [
"b54",
"b55",
"b22",
"b38"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | Consistent with this result, we observed that Rad54B associated with the termini of the Dmc1–ssDNA filament, by an electron microscopic analysis. | [
"54",
"55",
"22",
"38"
] | 145 | 9,668 | 0 | false | Consistent with this result, we observed that Rad54B associated with the termini of the Dmc1–ssDNA filament, by an electron microscopic analysis. | [] | Consistent with this result, we observed that Rad54B associated with the termini of the Dmc1–ssDNA filament, by an electron microscopic analysis. | true | true | true | true | true | 1,539 |
0 | DISCUSSION | 1 | 54 | [
"b54",
"b55",
"b22",
"b38"
] | 16,945,962 | pmid-1567678|pmid-11340626|pmid-8710842|pmid-9039264|pmid-11292336|pmid-16862129|pmid-15164066|pmid-16428451 | These observations suggest that Rad54B may stabilize the Dmc1–ssDNA complex by interacting with the terminal region of the Dmc1–ssDNA complex. | [
"54",
"55",
"22",
"38"
] | 142 | 9,669 | 0 | false | These observations suggest that Rad54B may stabilize the Dmc1–ssDNA complex by interacting with the terminal region of the Dmc1–ssDNA complex. | [] | These observations suggest that Rad54B may stabilize the Dmc1–ssDNA complex by interacting with the terminal region of the Dmc1–ssDNA complex. | true | true | true | true | true | 1,539 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | How could Rad54B stabilize the Dmc1–ssDNA complexes? | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 52 | 9,670 | 0 | false | How could Rad54B stabilize the Dmc1–ssDNA complexes? | [] | How could Rad54B stabilize the Dmc1–ssDNA complexes? | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | One possibility is that Rad54B could prevent the Dmc1–ssDNA nucleoprotein filament from disassembling by binding to one end of the filament. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 140 | 9,671 | 0 | false | One possibility is that Rad54B could prevent the Dmc1–ssDNA nucleoprotein filament from disassembling by binding to one end of the filament. | [] | One possibility is that Rad54B could prevent the Dmc1–ssDNA nucleoprotein filament from disassembling by binding to one end of the filament. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | This may lead to the unidirectional assembly of the Dmc1–ssDNA nucleoprotein filament at the DSB site. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 102 | 9,672 | 0 | false | This may lead to the unidirectional assembly of the Dmc1–ssDNA nucleoprotein filament at the DSB site. | [] | This may lead to the unidirectional assembly of the Dmc1–ssDNA nucleoprotein filament at the DSB site. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | The second possibility is that by physically interacting with Dmc1, Rad54B could alter the conformation of the Dmc1–ssDNA nucleoprotein filament from an inactive form to an active form. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 185 | 9,673 | 0 | false | The second possibility is that by physically interacting with Dmc1, Rad54B could alter the conformation of the Dmc1–ssDNA nucleoprotein filament from an inactive form to an active form. | [] | The second possibility is that by physically interacting with Dmc1, Rad54B could alter the conformation of the Dmc1–ssDNA nucleoprotein filament from an inactive form to an active form. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | Multiple studies have indicated that the fundamental mechanism of Dmc1-mediated recombination is the same as that of the RecA homologs, suggesting that Dmc1 forms helical filaments when performing the strand exchange reaction (22,45,48,56–58). | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 243 | 9,674 | 0 | false | Multiple studies have indicated that the fundamental mechanism of Dmc1-mediated recombination is the same as that of the RecA homologs, suggesting that Dmc1 forms helical filaments when performing the strand exchange reaction. | [
"22,45,48,56–58"
] | Multiple studies have indicated that the fundamental mechanism of Dmc1-mediated recombination is the same as that of the RecA homologs, suggesting that Dmc1 forms helical filaments when performing the strand exchange reaction. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 59 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | However, Dmc1 forms octameric rings alone and on DNA (59), and the conversion from rings to filaments is probably essential for the proper function of Dmc1. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 156 | 9,675 | 1 | false | However, Dmc1 forms octameric rings alone and on DNA, and the conversion from rings to filaments is probably essential for the proper function of Dmc1. | [
"59"
] | However, Dmc1 forms octameric rings alone and on DNA, and the conversion from rings to filaments is probably essential for the proper function of Dmc1. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 43 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | A recent study indicated that ATP binding may act as a trigger in the conversion of the Dmc1 octameric ring form to the helical filament form (43). | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 147 | 9,676 | 1 | false | A recent study indicated that ATP binding may act as a trigger in the conversion of the Dmc1 octameric ring form to the helical filament form. | [
"43"
] | A recent study indicated that ATP binding may act as a trigger in the conversion of the Dmc1 octameric ring form to the helical filament form. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | We found that Rad54B bound to the isolated ATPase domain of Dmc1, and this interaction may assist in changing in the conformation of the Dmc1 monomer to favor the formation of the helical filament, thus stabilizing the complex. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 227 | 9,677 | 0 | false | We found that Rad54B bound to the isolated ATPase domain of Dmc1, and this interaction may assist in changing in the conformation of the Dmc1 monomer to favor the formation of the helical filament, thus stabilizing the complex. | [] | We found that Rad54B bound to the isolated ATPase domain of Dmc1, and this interaction may assist in changing in the conformation of the Dmc1 monomer to favor the formation of the helical filament, thus stabilizing the complex. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | Based on these possibilities, we propose the following model (Figure 6), which explains the mechanism of DNA strand exchange promoted by Rad54B and Dmc1. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 153 | 9,678 | 0 | false | Based on these possibilities, we propose the following model (Figure 6), which explains the mechanism of DNA strand exchange promoted by Rad54B and Dmc1. | [] | Based on these possibilities, we propose the following model (Figure 6), which explains the mechanism of DNA strand exchange promoted by Rad54B and Dmc1. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | First, Rad54B associates with the terminus of the stacked rings, and binds to the ATPase domain of Dmc1. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 104 | 9,679 | 0 | false | First, Rad54B associates with the terminus of the stacked rings, and binds to the ATPase domain of Dmc1. | [] | First, Rad54B associates with the terminus of the stacked rings, and binds to the ATPase domain of Dmc1. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | This process may catalytically prevent the Dmc1–ssDNA filament from disassembling or promote the conversion of the Dmc1–DNA complex from stacked octameric rings to helical filaments. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 182 | 9,680 | 0 | false | This process may catalytically prevent the Dmc1–ssDNA filament from disassembling or promote the conversion of the Dmc1–DNA complex from stacked octameric rings to helical filaments. | [] | This process may catalytically prevent the Dmc1–ssDNA filament from disassembling or promote the conversion of the Dmc1–DNA complex from stacked octameric rings to helical filaments. | true | true | true | true | true | 1,540 |
1 | DISCUSSION | 1 | 22 | [
"b22",
"b45",
"b48",
"b56",
"b58",
"b59",
"b43"
] | 16,945,962 | pmid-156361|pmid-6325943|pmid-1581960|pmid-8602360|pmid-8066464|pmid-15164066|pmid-12456786|pmid-12912992|pmid-15164066|pmid-15917243|pmid-15235592|pmid-11459986|pmid-15899844|pmid-10485886|pmid-15125839 | The Dmc1–ssDNA nucleoprotein filament, which is probably the active form for the strand exchange reaction, then invades the homologous duplex DNA, forming a heteroduplex DNA intermediate. | [
"22",
"45",
"48",
"56",
"58",
"59",
"43"
] | 187 | 9,681 | 0 | false | The Dmc1–ssDNA nucleoprotein filament, which is probably the active form for the strand exchange reaction, then invades the homologous duplex DNA, forming a heteroduplex DNA intermediate. | [] | The Dmc1–ssDNA nucleoprotein filament, which is probably the active form for the strand exchange reaction, then invades the homologous duplex DNA, forming a heteroduplex DNA intermediate. | true | true | true | true | true | 1,540 |
2 | DISCUSSION | 1 | 55 | [
"b55",
"b60"
] | 16,945,962 | pmid-7651832|pmid-15105430|pmid-9108475|pmid-10209103|pmid-11030336|pmid-9590697|pmid-12453424|pmid-16862129|pmid-16818238 | Recent studies have shown that Rad54 has a potent translocase activity and stimulates the branch migration activity of Rad51 (55,60). | [
"55",
"60"
] | 133 | 9,682 | 0 | false | Recent studies have shown that Rad54 has a potent translocase activity and stimulates the branch migration activity of Rad51. | [
"55,60"
] | Recent studies have shown that Rad54 has a potent translocase activity and stimulates the branch migration activity of Rad51. | true | true | true | true | true | 1,541 |
2 | DISCUSSION | 1 | 55 | [
"b55",
"b60"
] | 16,945,962 | pmid-7651832|pmid-15105430|pmid-9108475|pmid-10209103|pmid-11030336|pmid-9590697|pmid-12453424|pmid-16862129|pmid-16818238 | These activities suggest that Rad54 is involved in the post-synaptic phase of recombination. | [
"55",
"60"
] | 92 | 9,683 | 0 | false | These activities suggest that Rad54 is involved in the post-synaptic phase of recombination. | [] | These activities suggest that Rad54 is involved in the post-synaptic phase of recombination. | true | true | true | true | true | 1,541 |
2 | DISCUSSION | 1 | 55 | [
"b55",
"b60"
] | 16,945,962 | pmid-7651832|pmid-15105430|pmid-9108475|pmid-10209103|pmid-11030336|pmid-9590697|pmid-12453424|pmid-16862129|pmid-16818238 | Although the previous and present Rad54B results have suggested its involvement in the presynaptic phase of recombination, it is easy to imagine that Rad54B functions in the post-synaptic phase of recombination, such as Rad54. | [
"55",
"60"
] | 226 | 9,684 | 0 | false | Although the previous and present Rad54B results have suggested its involvement in the presynaptic phase of recombination, it is easy to imagine that Rad54B functions in the post-synaptic phase of recombination, such as Rad54. | [] | Although the previous and present Rad54B results have suggested its involvement in the presynaptic phase of recombination, it is easy to imagine that Rad54B functions in the post-synaptic phase of recombination, such as Rad54. | true | true | true | true | true | 1,541 |
2 | DISCUSSION | 1 | 55 | [
"b55",
"b60"
] | 16,945,962 | pmid-7651832|pmid-15105430|pmid-9108475|pmid-10209103|pmid-11030336|pmid-9590697|pmid-12453424|pmid-16862129|pmid-16818238 | Further analyses of the effects of Rad54B on Dmc1 complexed with various DNA structures representing recombination intermediates may provide clues toward understanding the precise mechanism of the Rad54B-stimulated homologous recombination. | [
"55",
"60"
] | 240 | 9,685 | 0 | false | Further analyses of the effects of Rad54B on Dmc1 complexed with various DNA structures representing recombination intermediates may provide clues toward understanding the precise mechanism of the Rad54B-stimulated homologous recombination. | [] | Further analyses of the effects of Rad54B on Dmc1 complexed with various DNA structures representing recombination intermediates may provide clues toward understanding the precise mechanism of the Rad54B-stimulated homologous recombination. | true | true | true | true | true | 1,541 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | Uracil (U) arises in DNA either by erroneous incorporation of dUMP opposite adenine (A) during DNA synthesis or by deamination of cytosine (C), which generates a U mispaired with guanine (G). | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 191 | 9,686 | 0 | false | Uracil (U) arises in DNA either by erroneous incorporation of dUMP opposite adenine (A) during DNA synthesis or by deamination of cytosine (C), which generates a U mispaired with guanine (G). | [] | Uracil (U) arises in DNA either by erroneous incorporation of dUMP opposite adenine (A) during DNA synthesis or by deamination of cytosine (C), which generates a U mispaired with guanine (G). | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | To what extent A•U base pairs affect the function of DNA is unclear; G•U mispairs, however, give rise to C → T mutations if a DNA polymerase replicates across. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 159 | 9,687 | 0 | false | To what extent A•U base pairs affect the function of DNA is unclear; G•U mispairs, however, give rise to C → T mutations if a DNA polymerase replicates across. | [] | To what extent A•U base pairs affect the function of DNA is unclear; G•U mispairs, however, give rise to C → T mutations if a DNA polymerase replicates across. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | Uracil DNA glycosylases (UDGs) (1) have evolved to eliminate this irregular base from the DNA. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 94 | 9,688 | 1 | false | Uracil DNA glycosylases (UDGs) have evolved to eliminate this irregular base from the DNA. | [
"1"
] | Uracil DNA glycosylases (UDGs) have evolved to eliminate this irregular base from the DNA. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 2 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | They hydrolyze the N-glycosidic bond linking the U to the sugar moiety of the nucleotide, thereby initiating a base excision repair (BER) process (2) that restores the canonical Watson–Crick base pair. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 201 | 9,689 | 1 | false | They hydrolyze the N-glycosidic bond linking the U to the sugar moiety of the nucleotide, thereby initiating a base excision repair (BER) process that restores the canonical Watson–Crick base pair. | [
"2"
] | They hydrolyze the N-glycosidic bond linking the U to the sugar moiety of the nucleotide, thereby initiating a base excision repair (BER) process that restores the canonical Watson–Crick base pair. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 3–6 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | Mammalian cells posses at least four enzymes with UDG activity, namely UNG, TDG, SMUG1 and MBD4 (3–6), and the successful co-evolution of these enzymes implies that each of them fulfils specific non-redundant biological functions. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 230 | 9,690 | 1 | false | Mammalian cells posses at least four enzymes with UDG activity, namely UNG, TDG, SMUG1 and MBD4, and the successful co-evolution of these enzymes implies that each of them fulfils specific non-redundant biological functions. | [
"3–6"
] | Mammalian cells posses at least four enzymes with UDG activity, namely UNG, TDG, SMUG1 and MBD4, and the successful co-evolution of these enzymes implies that each of them fulfils specific non-redundant biological functions. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | The question then is how cells achieve the functional separation of these enzymatically redundant activities. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 109 | 9,691 | 0 | false | The question then is how cells achieve the functional separation of these enzymatically redundant activities. | [] | The question then is how cells achieve the functional separation of these enzymatically redundant activities. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | One way would be to control their spatial and temporal distribution as exemplified by the UNG proteins. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 103 | 9,692 | 0 | false | One way would be to control their spatial and temporal distribution as exemplified by the UNG proteins. | [] | One way would be to control their spatial and temporal distribution as exemplified by the UNG proteins. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 7 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | Differential expression of the human UNG gene from two alternative promoters generates two isoforms, UNG1 and UNG2, that localize to mitochondria and to nuclei, respectively (7). | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 178 | 9,693 | 1 | false | Differential expression of the human UNG gene from two alternative promoters generates two isoforms, UNG1 and UNG2, that localize to mitochondria and to nuclei, respectively. | [
"7"
] | Differential expression of the human UNG gene from two alternative promoters generates two isoforms, UNG1 and UNG2, that localize to mitochondria and to nuclei, respectively. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | Moreover, UNG2 expression is up-regulated during S-phase of the cell cycle where the protein associates with PCNA and RPA at replication foci, implicating a role for this UDG in the removal of misincorporated U during DNA replication (8,9). | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 240 | 9,694 | 0 | false | Moreover, UNG2 expression is up-regulated during S-phase of the cell cycle where the protein associates with PCNA and RPA at replication foci, implicating a role for this UDG in the removal of misincorporated U during DNA replication. | [
"8,9"
] | Moreover, UNG2 expression is up-regulated during S-phase of the cell cycle where the protein associates with PCNA and RPA at replication foci, implicating a role for this UDG in the removal of misincorporated U during DNA replication. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | Whether similar forms of regulation apply to other UDGs and, thus, could provide a cellular mechanism for functional coordination of uracil repair is not known. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 160 | 9,695 | 0 | false | Whether similar forms of regulation apply to other UDGs and, thus, could provide a cellular mechanism for functional coordination of uracil repair is not known. | [] | Whether similar forms of regulation apply to other UDGs and, thus, could provide a cellular mechanism for functional coordination of uracil repair is not known. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | Here, we report that Thymine-DNA Glycosylase (TDG), a mismatch-specific UDG, underlies strict cell cycle regulation. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 116 | 9,696 | 0 | false | Here, we report that Thymine-DNA Glycosylase (TDG), a mismatch-specific UDG, underlies strict cell cycle regulation. | [] | Here, we report that Thymine-DNA Glycosylase (TDG), a mismatch-specific UDG, underlies strict cell cycle regulation. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | TDG has a comparably broad substrate spectrum including the deamination product of 5-methylcytosine, i.e. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 105 | 9,697 | 0 | false | TDG has a comparably broad substrate spectrum including the deamination product of 5-methylcytosine, i.e. | [] | TDG has a comparably broad substrate spectrum including the deamination product of 5-methylcytosine, i.e. | true | true | true | true | true | 1,542 |
0 | INTRODUCTION | 1 | 6 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | a T mispaired with a G, but its most efficiently processed physiological substrate is a G•U mispair (6). | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 104 | 9,698 | 1 | false | a T mispaired with a G, but its most efficiently processed physiological substrate is a G•U mispair. | [
"6"
] | a T mispaired with a G, but its most efficiently processed physiological substrate is a G•U mispair. | false | true | true | true | false | 1,542 |
0 | INTRODUCTION | 1 | 1 | [
"B1",
"B2",
"B3 B4 B5 B6",
"B7",
"B8",
"B9",
"B6"
] | 17,526,518 | pmid-12483510|pmid-15568983|pmid-7819187|pmid-10074426|pmid-10499592|pmid-11554300|pmid-9016624|pmid-10393198|pmid-15084312|pmid-11554300|pmid-15084312|pmid-15084312 | Cells entering S-phase eliminate this glycosylase through the ubiquitin–proteasome pathway and maintain a TDG free state until DNA replication is completed. | [
"1",
"2",
"3–6",
"7",
"8",
"9",
"6"
] | 156 | 9,699 | 0 | false | Cells entering S-phase eliminate this glycosylase through the ubiquitin–proteasome pathway and maintain a TDG free state until DNA replication is completed. | [] | Cells entering S-phase eliminate this glycosylase through the ubiquitin–proteasome pathway and maintain a TDG free state until DNA replication is completed. | true | true | true | true | true | 1,542 |
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