| --- |
| license: cc-by-nc-4.0 |
| --- |
| |
|
|
| # FlashPPI: Linear-time prediction of proteome-scale microbial protein interactions |
|
|
| This model is used for benchmarking on the held out E. coli benchmark set (https://huggingface.co/datasets/tattabio/ecoli_pdb_benchmark). See the paper details on benchmarking. |
|
|
| The model trained on the full set is available here: https://huggingface.co/tattabio/flashppi. |
|
|
|
|
| ## Citing |
| If you use FlashPPI or our datasets in your research, please cite: |
|
|
| ``` |
| @article {Cornman2026FlashPPI, |
| author = {Cornman, Andre and Tranzillo, Matt and Zulaybar, Nicolo G and Bouzit, Imane and Hwang, Yunha}, |
| title = {Linear-time prediction of proteome-scale microbial protein interactions}, |
| year = {2026}, |
| doi = {10.64898/2026.03.01.708874}, |
| publisher = {Cold Spring Harbor Laboratory}, |
| URL = {https://www.biorxiv.org/content/early/2026/03/02/2026.03.01.708874}, |
| journal = {bioRxiv} |
| } |
| ``` |
