query stringclasses 190 values | positive listlengths 1 5 | negative listlengths 4 4 | system stringlengths 69 2.19k |
|---|---|---|---|
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'Patients in this sample were sufferers of chronic pain, who had already chosen an approved way of expressing their distress.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'The duration of the patients' pain could approximately be determined, yet the preexisting level of alexithymia was not known.', answer the user's query. |
What is the biomedical concept corresponding to 'person'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"kingdom",
"humans (homo)",
"genus",
"probles"
] | Given the context 'In the usual absence of internal stimuli, alexithymic person may be expected to maintain an external focus of attention, such as pain.', answer the user's query. |
What is the biomedical concept corresponding to 'person'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"kingdom",
"humans (homo)",
"genus",
"probles"
] | Given the context 'Symptom chronicity may force the alexithymic person to attent to and amplify this somatic sensation.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'Therefore, alexithymic patients might be expected to differ from nonalexithymic ones in their anxiety levels.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'Yet, in our pain group alexithymic patients showed no significant difference from the nonalexithymics on trait anxiety.', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"genus",
"this",
"species"
] | Given the context 'The reasons may be lying in the specific characteristics of this patient group itself.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'The study included patients suffering from chronic symptoms; with an average of 7,44 ± 6,82 years of pain in the alexithymic and 3,31 ± 2,79 years in the nonalexithymic groups.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'It is not known whether it should be addressed in the treatment of pain patients, but a high level of alexithymia may effect the nature of assessment.', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus cereus group'? | [
"bacillus cereus group"
] | [
"bacillus subtilis group",
"bacillus cereus group sp.",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"bacillus cereus f (bacillus cereus strain f)",
"bacillus cereus str. f (bacillus cereus f)"
] | Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis (strain sterne) (bacillus anthracis str. sterne)",
"anthrax",
"bacillus anthracis ames (bacillus anthracis str. ames)"
] | Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus cereus var. thuringiensis (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus cereus group'? | [
"bacillus cereus group"
] | [
"bacillus subtilis group",
"bacillus cereus group sp.",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis (strain sterne) (bacillus anthracis str. sterne)",
"anthrax",
"bacillus anthracis ames (bacillus anthracis str. ames)"
] | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'anthrax'? | [
"anthrax (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)"
] | [
"anthrax",
"anthrax anthrax (musca anthrax)",
"anthrenus",
"anthrax varius"
] | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus cereus var. thuringiensis (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"bacillus cereus f (bacillus cereus strain f)",
"bacillus cereus str. f (bacillus cereus f)"
] | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Therefore, we have developed a database that compiles and integrates MLST data from all five schemes for the B. cereus group, accessible at http://mlstoslo.uio.no/. Supertree techniques were used to combine the phylogenetic information from analysis of all schemes and datasets, in order to produce an integrated view of the B. cereus group population.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Therefore, we have developed a database that compiles and integrates MLST data from all five schemes for the B. cereus group, accessible at http://mlstoslo.uio.no/. Supertree techniques were used to combine the phylogenetic information from analysis of all schemes and datasets, in order to produce an integrated view of the B. cereus group population.', answer the user's query. |
What is the biomedical concept corresponding to 'neisseria meningitidis'? | [
"neisseria meningitidis (micrococcus meningitidis cerebrospinalis)",
"micrococcus meningitidis (neisseria meningitidis)",
"micrococcus meningitidis cerebrospinalis (neisseria meningitidis)"
] | [
"neisseria meningitidis (group b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis (serogroup b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis group b (neisseria meningitidis serogroup b)",
"neisseria meningitidis (serogroup a) (neisseria meningitidis serogroup a)"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus pneumoniae'? | [
"micrococcus pneumoniae (streptococcus pneumoniae)",
"streptococcus pneumoniae (diplococcus pneumoniae)",
"diplococcus pneumoniae (streptococcus pneumoniae)"
] | [
"streptococcus",
"streptococcus parasuis",
"streptococcus suis",
"streptococcus infantis"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus pyogenes'? | [
"streptococcus hemolyticus (streptococcus pyogenes)",
"streptococcus pyogenes (streptococcus erysipelatos)",
"streptococcus erysipelatos (streptococcus pyogenes)"
] | [
"streptococcus suis",
"streptococcus",
"streptococcus infantis",
"streptococcus parasuis"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'haemophilus influenzae'? | [
"bacterium influenzae (haemophilus influenzae)",
"influenza-bacillus (haemophilus influenzae)",
"haemophilus influenzae (haemophilus meningitidis)",
"haemophilus meningitidis (haemophilus influenzae)",
"mycobacterium influenzae (haemophilus influenzae)"
] | [
"haemophilus",
"haemophilus haemolyticus (bacillus x)",
"haemophilus somnus (histophilus somni)",
"haemophilus somnifer (histophilus somni)"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'staphylococcus aureus'? | [
"staphylococcus pyogenes aureus (staphylococcus aureus)",
"micrococcus aureus (staphylococcus aureus)",
"staphylococcus aureus (staphylococcus aureus subsp. anaerobius)",
"micrococcus pyogenes (staphylococcus aureus)"
] | [
"staphylococcus staphylolyticus (staphylococcus simulans bv. staphylolyticus)",
"staphylococcus aureus subsp. aureus col (staphylococcus aureus col)",
"staphylococcus aureus col (staphylococcus aureus subsp. aureus col)",
"staphylococcus sp. s"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'campylobacter jejuni'? | [
"campylobacter jejuni (campylobacter fetus subsp. jejuni)",
"campylobacter fetus subsp. jejuni (campylobacter jejuni)",
"vibrio jejuni (campylobacter jejuni)"
] | [
"campylobacter jejuni jejuni (campylobacter jejuni subsp. jejuni)",
"campylobacter jejuni subsp. jejuni (campylobacter jejuni jejuni)",
"campylobacter jejuni-like bacterium",
"campylobacter jejuni subsp. jejuni 1798"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'enterococcus faecium'? | [
"enterococcus faecium (streptococcus faecium)",
"streptococcus faecium (enterococcus faecium)"
] | [
"streptococcus faecalis (enterococcus faecalis)",
"streptococcus faecium var. casseliflavus (enterococcus casseliflavus)",
"enterococcus florum",
"enterococcus plantarum"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'burkholderia pseudomallei'? | [
"pseudomonas pseudomallei (burkholderia pseudomallei)",
"bacillus pseudomallei (burkholderia pseudomallei)",
"malleomyces pseudomallei (burkholderia pseudomallei)",
"burkholderia pseudomallei (loefflerella pseudomallei)",
"loefflerella pseudomallei (burkholderia pseudomallei)"
] | [
"burkholderia pseudomallei os (burkholderia pseudomallei strain os)",
"burkholderia pseudomallei-like species (burkholderia thailandensis)",
"burkholderia pseudomallei 5(1949)",
"burkholderia thailandensis (burkholderia pseudomallei-like species)"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"enterobacteria (enterobacteriaceae)",
"escherichia sp."
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica'? | [
"salmonella enterica (salmonella enterica ser. choleraesuis)",
"salmonella cholerae-suis (salmonella enterica)",
"salmonella choleraesuis (salmonella enterica)"
] | [
"salmonella",
"salmonella enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella enterica serovar enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella enterica subsp. enterica serovar enteritidis (salmonella enterica serovar enteritidis)"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus cereus group'? | [
"bacillus cereus group"
] | [
"bacillus subtilis group",
"bacillus cereus group sp.",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis (strain sterne) (bacillus anthracis str. sterne)",
"anthrax",
"bacillus anthracis ames (bacillus anthracis str. ames)"
] | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'anthrax'? | [
"anthrax (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)"
] | [
"anthrax",
"anthrax anthrax (musca anthrax)",
"anthrenus",
"anthrax varius"
] | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"bacillus cereus f (bacillus cereus strain f)",
"bacillus cereus str. f (bacillus cereus f)"
] | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus cereus var. thuringiensis (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. weihenstephanensis'? | [
"bacillus weihenstephanensis (bacillus mycoides)"
] | [
"pseudomonas weihenstephanensis",
"paenilisteria weihenstephanensis (listeria weihenstephanensis)",
"listeria weihenstephanensis (paenilisteria weihenstephanensis)",
"henneguya weishanensis"
] | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Unlike other bacterial species that are typed using a single MLST scheme, five separate schemes have been developed for the B. cereus group, based on different sets of genes and isolates (5–10).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Studies with the various schemes have independently indicated that the B. cereus group population is divided into three main phylogenetic clusters and that species are usually intermixed within the groups.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis (strain sterne) (bacillus anthracis str. sterne)",
"anthrax",
"bacillus anthracis ames (bacillus anthracis str. ames)"
] | Given the context 'One cluster contains the monomorphic B. anthracis isolates and a number of B. cereus and B. thuringiensis strains, many of which are from clinical sources.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"bacillus cereus f (bacillus cereus strain f)",
"bacillus cereus str. f (bacillus cereus f)"
] | Given the context 'One cluster contains the monomorphic B. anthracis isolates and a number of B. cereus and B. thuringiensis strains, many of which are from clinical sources.', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus cereus var. thuringiensis (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'One cluster contains the monomorphic B. anthracis isolates and a number of B. cereus and B. thuringiensis strains, many of which are from clinical sources.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"bacillus cereus f (bacillus cereus strain f)",
"bacillus cereus str. f (bacillus cereus f)"
] | Given the context 'A second heterogeneous cluster includes B. cereus and B. thuringiensis isolates from various origins, while cold-tolerant B. weihenstephanensis and B. cereus isolates belong to the third group.', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus cereus var. thuringiensis (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'A second heterogeneous cluster includes B. cereus and B. thuringiensis isolates from various origins, while cold-tolerant B. weihenstephanensis and B. cereus isolates belong to the third group.', answer the user's query. |
What is the biomedical concept corresponding to 'b. weihenstephanensis'? | [
"bacillus weihenstephanensis (bacillus mycoides)"
] | [
"pseudomonas weihenstephanensis",
"paenilisteria weihenstephanensis (listeria weihenstephanensis)",
"listeria weihenstephanensis (paenilisteria weihenstephanensis)",
"henneguya weishanensis"
] | Given the context 'A second heterogeneous cluster includes B. cereus and B. thuringiensis isolates from various origins, while cold-tolerant B. weihenstephanensis and B. cereus isolates belong to the third group.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"bacillus cereus f (bacillus cereus strain f)",
"bacillus cereus str. f (bacillus cereus f)"
] | Given the context 'A second heterogeneous cluster includes B. cereus and B. thuringiensis isolates from various origins, while cold-tolerant B. weihenstephanensis and B. cereus isolates belong to the third group.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'The separate MLST analyses have also revealed that the B. cereus group population is weakly clonal overall due to numerous clinical and virulent isolates emerging from different phylogenetic positions (5–8,11–14), with the exception of the ‘cold-tolerant’ cluster that seems to exhibit a panmictic (or sexual) population structure, i.e. with frequent genetic exchanges between strains (9).
', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Here, in order to provide the B. cereus group research community with a common MLST resource, we have developed on the same website a database, SuperCAT, that compiles and integrates MLST data from all the published B. cereus group schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Here, in order to provide the B. cereus group research community with a common MLST resource, we have developed on the same website a database, SuperCAT, that compiles and integrates MLST data from all the published B. cereus group schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'In addition, we applied supertree reconstruction methods to build an integrated view of the B. cereus group population and phylogeny.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'The SuperCAT database provides information, sequence and phylogenetic data for all bacterial isolates that have been typed using any of the five published MLST schemes for the B. cereus group (Table 1).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'SuperCAT also contains the phylogenetic supertree of the B. cereus group reconstructed by combining the sequence data from all five schemes, as well as supertrees built for individual schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'In addition, sequences of all MLST loci were extracted from the complete genomes of the 21 sequenced B. cereus group strains available in Genbank.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Table 1.The five MLST schemes designed for typing bacteria of the B. cereus groupSchemeGenesTotal sequence length (bp)Total number of isolateseUsed in (references)Helgasonadk, ccpA, ftsA, glpT, pyre, recF and sucC2 938120(6,12,46)Candelon–Sorokina,cclpC, dinB, gdpD, panC, purF and yhfL2 850149(9,10)Kob,cgyrB, mbl, mdh, mutS, pycA(1) and rpoB2 00265(7)Priesta,bglpF, gmk, ilvD, pta, purH, pycA(2) and tpi2 829721(8,11,13–15,46–48)Tourasse–Helgasona,b,dadk, ccpA, glpF, glpT, panC, pta and pycA(2)2 658172(5)aSpecific databases for the Priest and Tourasse–Helgason schemes are accessible at http://pubmlst.org/bcereus/ and http://mlstoslo.uio.no/, respectively.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'A BLAST database for the Candelon–Sorokin scheme is available at http://spock.jouy.inra.fr/cgi-bin/bacilliMLSopen.cgi.bWhile the Tourasse–Helgason and Priest schemes use the same gene fragment for the pycA gene, the Ko scheme is based on a different and non-overlapping gene region.cThe B. cereus group-specific transcriptional regulator plcR was originally included in the Candelon–Sorokin and Ko schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'In this study, the 21 B. cereus group strains that have been completely sequenced, and for which the sequences at all 26 MLST loci are thus available, can be used to join all five schemes and provide the strain overlap necessary for supertree analysis.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'The global B. cereus group supertree, containing 1029 isolates, was reconstructed according to the widely used matrix representation by parsimony (MRP) procedure (Figure 1; (19,25,26)).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Figure 1.Schematic overview of the B. cereus group supertree reconstruction procedure using Matrix Representation by Parsimony (MRP).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'It should be noted that the global 1029-strain supertree retains the phylogenetic signals from the individual schemes and contains the three main clusters of the B. cereus group population described in the section ‘Introduction’.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis (strain sterne) (bacillus anthracis str. sterne)",
"anthrax",
"bacillus anthracis ames (bacillus anthracis str. ames)"
] | Given the context 'These 21 isolates cover all three clusters, although the majority of them are B. anthracis strains or clinical strains closely related to B. anthracis due to the focus of genome sequencing projects, making the part of the supertree containing these isolates likely to be more accurate than the rest of the tree.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis (strain sterne) (bacillus anthracis str. sterne)",
"anthrax",
"bacillus anthracis ames (bacillus anthracis str. ames)"
] | Given the context 'These 21 isolates cover all three clusters, although the majority of them are B. anthracis strains or clinical strains closely related to B. anthracis due to the focus of genome sequencing projects, making the part of the supertree containing these isolates likely to be more accurate than the rest of the tree.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Precise within-cluster groupings may contain more uncertainty, as indicated by the large number of unresolved multifurcations in the B. cereus group supertree.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'Apart from the basic functions for selecting and accessing strain information and sequence data for all five B. cereus group MLST schemes, the main features of SuperCAT relate to the manipulation of the supertrees constructed by the MRP approach.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'The global supertree based on the combination of all five B. cereus group MLST schemes as well as the five scheme-specific supertrees can be browsed according to various user-chosen criteria (Figure 2).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'DISCUSSION AND FUTURE DEVELOPMENTS
SuperCAT is a newly created database devoted to the B. cereus group of bacteria whose main objectives are to provide a common MLST repository and means for building a comprehensive genetic analysis of the group that has been typed by five separate schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'In particular, a new improved method has recently been developed for taking into account both nucleotide substitutions and recombination events in phylogenies, as part of the ClonalFrame software, which has been applied to the B. cereus group and the Priest scheme (38).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus subtilis group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus amyloliquefaciens group (operational group b. amyloliquefaciens)"
] | Given the context 'As MLEE, AFLP and MLST have different levels of resolution, one can hope that combining them might provide an even more robust supertree for the B. cereus group.
', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mice (mus <genus>) (mus <genus>)",
"mus <genus> (mice (mus <genus>))",
"mus musculus musculus (eastern european house mouse)"
] | Given the context 'RESULTS AND DISCUSSION Potential cytotoxic activity of synthesized fused isoxazolines 1 and 2 was tested in vitro on four monolayer tumor cell lines: MG-22A (mouse hepatoma), HT-1080 (human fibroblastoma), B16 (mouse melanoma), Neuro 2A (mouse neiroblastoma).', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'RESULTS AND DISCUSSION Potential cytotoxic activity of synthesized fused isoxazolines 1 and 2 was tested in vitro on four monolayer tumor cell lines: MG-22A (mouse hepatoma), HT-1080 (human fibroblastoma), B16 (mouse melanoma), Neuro 2A (mouse neiroblastoma).', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mice (mus <genus>) (mus <genus>)",
"mus <genus> (mice (mus <genus>))",
"mus musculus musculus (eastern european house mouse)"
] | Given the context 'RESULTS AND DISCUSSION Potential cytotoxic activity of synthesized fused isoxazolines 1 and 2 was tested in vitro on four monolayer tumor cell lines: MG-22A (mouse hepatoma), HT-1080 (human fibroblastoma), B16 (mouse melanoma), Neuro 2A (mouse neiroblastoma).', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mice (mus <genus>) (mus <genus>)",
"mus <genus> (mice (mus <genus>))",
"mus musculus musculus (eastern european house mouse)"
] | Given the context 'RESULTS AND DISCUSSION Potential cytotoxic activity of synthesized fused isoxazolines 1 and 2 was tested in vitro on four monolayer tumor cell lines: MG-22A (mouse hepatoma), HT-1080 (human fibroblastoma), B16 (mouse melanoma), Neuro 2A (mouse neiroblastoma).', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'Introduction
Since the early 1970s, the human major histocompatibility complex (MHC) has been shown to be associated with a number of autoimmune, inflammatory, and infectious diseases, and it continues to be the focus of intense research [1].', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'The classical class I and class II loci encode the human leucocyte antigen (HLA) proteins involved in antigen presentation to T cells, initiating the adaptive immune response.', answer the user's query. |
What is the biomedical concept corresponding to 'man'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'Systemic lupus erythematosus (SLE/lupus, [Online Mendelian Inheritance in Man 152700, http://www.ncbi.nlm.nih.gov/sites/entrez?db=OMIM&TabCmd=Limits]) is a chronic, multi-system autoimmune disease affecting young women ten times more commonly than men.', answer the user's query. |
What is the biomedical concept corresponding to 'women'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"kingdom",
"this",
"humans (homo)",
"genus"
] | Given the context 'Systemic lupus erythematosus (SLE/lupus, [Online Mendelian Inheritance in Man 152700, http://www.ncbi.nlm.nih.gov/sites/entrez?db=OMIM&TabCmd=Limits]) is a chronic, multi-system autoimmune disease affecting young women ten times more commonly than men.', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mice (mus <genus>) (mus <genus>)",
"mus <genus> (mice (mus <genus>))",
"mus musculus musculus (eastern european house mouse)"
] | Given the context 'A role for another class III gene, tumour necrosis factor alpha (TNF), in SLE was suggested following the observation that the lupus-prone New Zealand F1 mouse hybrid exhibits constitutively low TNF expression [10].', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'Recently, the development of antinuclear antibodies in patients treated with TNF antagonists has also stimulated interest in the possible role of TNF in SLE [11–13].', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'Murine and human candidate gene studies, together with genome-wide linkage screens, provide further support that multiple genetic loci, including the mouse MHC complex H2 and the human MHC locus, contribute to disease susceptibility [14–17].
', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mice (mus <genus>) (mus <genus>)",
"mus <genus> (mice (mus <genus>))",
"mus musculus musculus (eastern european house mouse)"
] | Given the context 'Murine and human candidate gene studies, together with genome-wide linkage screens, provide further support that multiple genetic loci, including the mouse MHC complex H2 and the human MHC locus, contribute to disease susceptibility [14–17].
', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'Murine and human candidate gene studies, together with genome-wide linkage screens, provide further support that multiple genetic loci, including the mouse MHC complex H2 and the human MHC locus, contribute to disease susceptibility [14–17].
', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'It should be noted that the human MHC was first associated with SLE in 1971, when studies demonstrated that lupus probands were enriched for the class I alleles HL-A8 (now known as HLA-B8) and HLA-W15 (now known as HLA-B15) when compared with healthy controls [18,19].', answer the user's query. |
What is the biomedical concept corresponding to 'saccharomyces cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces cf. cerevisiae",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisiae/paradoxus)",
"saccharomyces hansenii (debaryomyces hansenii)"
] | Given the context 'This SNP is located within intron 6 of the class III gene, superkiller viralicidic activity 2-like (Saccharomyces cerevisiae) (SKIV2L), and is located approximately 500 kb telomeric to the HLA-DRB1 gene.', answer the user's query. |
What is the biomedical concept corresponding to 'c. elegans'? | [
"caenorhabditis elegans (rhabditis elegans)",
"rhabditis elegans (caenorhabditis elegans)"
] | [
"elegans subgroup (in: flies)",
"caenorhabditis",
"drosophila elegans",
"elegans subgroup (in: mosquitos)"
] | Given the context 'Analysis of these data (Figure 4) suggests the presence of short-range LD around our associated variant, rs419788, in CEPH families, encompassing approximately 40 kb of the genome which includes the five genes: complement factor B (CFB), RD RNA binding protein (RDBP), SKIV2L, dom-3 homolg Z (C. elegans) (DOM3Z), and serine/threonine kinase 19 (STK19), and does not include the complement C4 locus.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"true yeasts (saccharomycotina)",
"saccharomyces cerevisiae or paradoxus (saccharomyces cf. cerevisiae/paradoxus)",
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces albicans (candida albicans)"
] | Given the context 'The function of Dom3z is currently unknown, although the homologous yeast protein binds nuclear exoribonuclease.', answer the user's query. |
What is the biomedical concept corresponding to 'participants'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"humans (homo)",
"genus"
] | Given the context 'All study participants are European Caucasian on the basis of grandparental origin.', answer the user's query. |
What is the biomedical concept corresponding to 'participants'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"humans (homo)",
"genus"
] | Given the context 'Written consent was obtained from all study participants and ethical approval for this study was obtained from the Multi-Centre Research Ethics Committee (MREC 2 June 1998).
', answer the user's query. |
What is the biomedical concept corresponding to 'man'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"kingdom",
"genus"
] | Given the context 'Supporting Information
Accession Numbers
The Online Mendelian Inheritance in Man (OMIM, http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim) accession numbers for the genes described in this study are as follows: AGER, 600214; BAT3, 142590; C4A, 120810; C4B, 120820; CFB, 138470; DOM3Z, 605996; DOM3Z, 605996; EHMT2, 604599; HLA-B, 142830; HLA-DPB2, 120290; HLA-DQA1, 146880; HLA-DQB1, 604305; HLA-DRA, 142860; HLA-DRB1, 142857; KIAA1949, 610990; MICA, 600169; NOTCH4, 164951; RDBP, 154040; RDBP, 154040; SKIV2L, 600478; SLC44A4, 606107; STK19, 604977; STK19, 604977; TNF, 191160; and TNXB, 600985.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'Estrogen receptor alpha (ERα) mRNA copy numbers in immunohistochemically ERα-positive-, and negative breast cancer tissues
Abstract
Background
The presence of ERα is the basis for treating breast cancer patients with targeted molecular therapies that block estrogen stimulation of breast cancer cell division.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'To select patients for the above therapies, currently, the ERα presence in breast cancer tissues is determined in clinical laboratories by microscopically scoring the slides subjected to immunohistochemistry (IHC).', answer the user's query. |
What is the biomedical concept corresponding to 'women'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"kingdom",
"this",
"humans (homo)",
"genus"
] | Given the context 'Background
Breast cancer is the most diagnosed and the second leading cause of cancer deaths for women in the United States striking about 300,000 and killing about 40,000 women a year [1].', answer the user's query. |
What is the biomedical concept corresponding to 'women'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"kingdom",
"this",
"humans (homo)",
"genus"
] | Given the context 'Background
Breast cancer is the most diagnosed and the second leading cause of cancer deaths for women in the United States striking about 300,000 and killing about 40,000 women a year [1].', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'Because endogenous estrogens directly promote the growth of breast cancer cells, estrogen deprivation either by inhibiting its biosynthesis (aromatase inhibitors) or blocking estrogen-mediated gene transcription (tamoxifen) through its high affinity receptor, the estrogen receptor alpha (ERα), are the primary lines of therapy for breast cancer patients.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'Currently, only those patients who express ERα in their tumors are chosen for aromatase inhibitor or tamoxifen therapies.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'The patients who express ERα in their tumors have an overall longer cancer-free survival and lower recurrence rates than patients who do not express this receptor [3].
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'The patients who express ERα in their tumors have an overall longer cancer-free survival and lower recurrence rates than patients who do not express this receptor [3].
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"this",
"genus",
"species"
] | Given the context 'To predict prognosis and identify patients for the above two anti-estrogen therapies, every breast cancer tissue is currently screened for the presence of ERα before a treatment regimen is selected for any breast cancer patient.', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"genus",
"this",
"species"
] | Given the context 'To predict prognosis and identify patients for the above two anti-estrogen therapies, every breast cancer tissue is currently screened for the presence of ERα before a treatment regimen is selected for any breast cancer patient.', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"genus",
"this",
"species"
] | Given the context 'Our rational for establishing a cut off value is that any patient who expresses above the cut off level could be selected as a candidate for anti-estrogen therapies and could be considered to have good prognosis.
', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"probles",
"genus",
"this",
"species"
] | Given the context 'Based on our data above any patient who has more than 5 × 106 copies per 1010 GAPDH copies in her tumor tissue could be considered positive for ERα, could be selected for anti-estrogen therapies and considered to have good prognosis.', answer the user's query. |
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