instruction stringlengths 225 2.35k | input stringlengths 89 1.5k | response stringclasses 698 values |
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<Instruct>: Given the context 'A recent study from Giordano et al.34 has shown a twofold reduced luciferase activity for the G nucleotide bearing promoter haplotype in transfected rat pituitary cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rat (aka rattus) (aka rattus)
B: rats (aka rattus norvegicus) (aka rattus norvegicus)
C: rats (aka rattus sp.) (aka rattus sp.)
D: rattus rattus (rattus wroughtoni) (aka rattus rattus)
E: rattus rattoides (aka rattus pyctoris)
F: None of the above. | [B] |
<Instruct>: Given the context 'The high density of SNPs and their proximity hamper other genotyping strategies for rapid determination of the complete GH1 SNP map in large control and patient populations.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: genus
B: isolate
C: human (aka homo sapiens)
D: goes
E: other (aka unidentified)
F: None of the above. | [C] |
<Instruct>: Given the context 'Systematic GH1 gene analysis in patients with growth delay and suspected GH deficiency/insufficiency will clarify whether different SNP frequencies and/or the presence of different sequence changes may be associated with phenotypes in them.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: goes
B: this
C: other (aka unidentified)
D: subsection
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Down-regulation of the M6P/IGF-II receptor increases cell proliferation and reduces apoptosis in neonatal rat cardiac myocytes
Abstract
Background
The mannose 6-phosphate/insulin-like growth factor-II receptor (M6P/IGF2R) is a multi-functional protein that has been implicated in regulation of cell growth and apoptosis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus albus
B: rattus rattoides (aka rattus rattus)
C: rattus (rats (aka rattus))
D: mus norvegicus (aka rattus norvegicus)
E: rats (aka rattus sp.) (aka rattus sp.)
F: None of the above. | [D] |
<Instruct>: Given the context 'Results
We down-regulated the expression of M6P/IGF2R in neonatal rat cardiac myocytes and examined the effect on cell proliferation and apoptosis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus pyctoris (rattus rattoides) (aka rattus pyctoris)
B: rats (aka rattus) (aka rattus)
C: rats (aka rattus sp.) (aka rattus sp.)
D: brown rat (aka rattus norvegicus)
E: black rat (aka rattus rattus)
F: None of the above. | [D] |
<Instruct>: Given the context 'However, alterations in the control of apoptosis have also been shown to contribute to human diseases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: mammals (aka mammalia)
B: probles
C: homo sapiens (human) (aka homo sapiens)
D: macrobiotus sapiens
E: species
F: None of the above. | [C] |
<Instruct>: Given the context 'Cardiac myocytes express relatively high levels of M6P/IGF2R and transgenic mice containing a homologous deletion of the M6P/IGF2R gene manifest ventricular hyperplasia due to an increase in cell number [9,10], suggesting that the M6P/IGF2R normally acts to suppress cardiac myocyte cell growth.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus domesticus (aka mus musculus domesticus)
B: peromyscus
C: mus castaneus (aka mus musculus castaneus)
D: mus <genus> (mice (aka mus <genus>))
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Cardiac myocytes express relatively high levels of M6P/IGF2R and transgenic mice containing a homologous deletion of the M6P/IGF2R gene manifest ventricular hyperplasia due to an increase in cell number [9,10], suggesting that the M6P/IGF2R normally acts to suppress cardiac myocyte cell growth.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus <genus> (mice (aka mus <genus>))
B: peromyscus
C: mus castaneus (aka mus musculus castaneus)
D: mus domesticus (aka mus musculus domesticus)
E: None of the above. | [E] |
<Instruct>: Given the context 'Adenoviral delivery of ribozymes increases the proliferation of cardiac myocytes
We examined the effects of the ribozyme on the growth of cultured neonatal rat cardiac myocytes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus (rats (aka rattus))
B: brown rat (aka rattus norvegicus)
C: rattus rattus (rattus wroughtoni) (aka rattus rattus)
D: rattus sp. (rats (aka rattus sp.))
E: rattus norvegicus albus
F: None of the above. | [B] |
<Instruct>: Given the context 'Supporting evidence for the involvement of IGF-II in the proliferative effect resulting from loss of M6P/IGF2R function comes from studies of M6P/IGF2R knock-out mice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mouse (aka mus musculus)
B: western european house mouse (aka mus musculus domesticus)
C: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
D: mus (aka mus <subgenus>) (aka mus <subgenus>)
E: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
F: None of the above. | [A] |
<Instruct>: Given the context 'M6P/IGF2R-null mice display global hyperplasia that coincides with elevated levels of IGF-II.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus castaneus (aka mus musculus castaneus)
B: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: mus (aka mus <genus>) (aka mus <genus>)
E: mouse (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'The nucleotide numbers of the rat M6P/IGF2R sequence targeted by the hammerhead ribozyme is 1147–1160 after coding site (exon 9).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus albus
B: rats (aka rattus sp.) (aka rattus sp.)
C: black rat (aka rattus rattus)
D: rattus rattoides (aka rattus pyctoris)
E: mus norvegicus (aka rattus norvegicus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Cell cultures and infection with Ad-GFP/Rz-IGF2R and Ad-GFP
Cardiac myocytes were isolated from 1-day-old newborn rats using the Neonatal Cardiomyocyte Isolation System (Worthington).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rats]
<Options>: A: rats (aka rattus) (aka rattus)
B: rats (aka rattus sp.) (aka rattus sp.)
C: rats (aka rattus norvegicus) (aka rattus norvegicus)
D: rattus norvegicus albus
E: rattus rattoides (aka rattus pyctoris)
F: None of the above. | [C] |
<Instruct>: Given the context 'The isolated cells were plated in 6-well plates and cultured in F-10 medium containing 5% (vol/vol) FBS and 10% (vol/vol) horse serum at 37°C in a tissue culture incubator with 5% CO2 and 98% relative humidity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [horse]
<Options>: A: equine (aka equus caballus)
B: equus subg. equus (aka equus)
C: equus ferus (equus caballus ferus) (aka equus ferus)
D: eques
E: equus sp.
F: None of the above. | [A] |
<Instruct>: Given the context 'The plasmid containing the rat M6P/IGF2R gene was linearized and used as a transcription template.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus albus
B: rats (aka rattus sp.) (aka rattus sp.)
C: norway rat (aka rattus norvegicus)
D: black rat (aka rattus rattus)
E: rattus rattoides (aka rattus pyctoris)
F: None of the above. | [C] |
<Instruct>: Given the context 'Antisense RNA probes were transcribed in vitro using [33P]-UTP, T7 polymerase (Riboprobea System T7 kit, Promega), hybridized with the total RNA extracted from the rat cardiomyocytes, and digested with ribonuclease to remove non-hybridized RNA and probe.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus sp. (rats (aka rattus sp.))
B: rattus rattoides (aka rattus pyctoris)
C: brown rat (aka rattus norvegicus)
D: rattus norvegicus albus
E: rat (aka rattus) (aka rattus)
F: None of the above. | [C] |
<Instruct>: Given the context 'Briefly, cells were permeabilized with 0.25% saponin in 50 mM Hepes (pH 7.0), 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, and 10 mM mannose-6-phosphate (M6P) for 30 minutes on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: eutherian mammals (aka eutheria)
B: homo sapiens (human) (aka homo sapiens)
C: birds (aka aves)
D: macrobiotus sapiens
E: humans (aka homo)
F: None of the above. | [B] |
<Instruct>: Given the context 'They were incubated with 20,000 units/ml β-glucuronidase from bovine liver (Sigma) in 50 mM Hepes (pH 7.5) containing 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, 0.5% saponin with or without 10 mM M6P overnight on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine; human]
<Options>: A: cattle (aka bos)
B: bos sp.
C: bos indicus (bos primigenius indicus) (aka bos indicus)
D: primate (aka primates)
E: macrobiotus sapiens
F: animals (aka metazoa)
G: human (aka homo sapiens)
H: cow (aka bos taurus) (aka bos taurus)
I: species
J: bos bubalis bubalis (aka bubalus bubalis bubalis)
K: None of the above. | [H; G] |
<Instruct>: Given the context 'They were incubated with 20,000 units/ml β-glucuronidase from bovine liver (Sigma) in 50 mM Hepes (pH 7.5) containing 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, 0.5% saponin with or without 10 mM M6P overnight on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine; human]
<Options>: A: placental mammals (aka eutheria)
B: bos bubalis bubalis (aka bubalus bubalis bubalis)
C: bos (cattle) (aka bos)
D: bovinae
E: mammals (aka mammalia)
F: species
G: suborder
H: bos bubalis (aka bubalus bubalis)
I: cow (aka bos taurus) (aka bos taurus)
J: human (aka homo sapiens)
K: None of the above. | [I; J] |
<Instruct>: Given the context 'Briefly, confluent cell cultures were washed twice with pre-warmed serum-free DMEM followed by incubation with DMEM containing 5 mg/ml human serum albumin and 10 mM M6P for 20 minutes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: primate (aka primates)
B: animals (aka metazoa)
C: human (aka homo sapiens)
D: homo (humans) (aka homo)
E: suborder
F: None of the above. | [C] |
<Instruct>: Given the context 'Cells were then incubated in DMEM containing 5 mg/ml human serum albumin alone or 4000 units β-glucuronidase with or without 10 mM M6P for 2 hours at 37°C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: species
B: animals (aka metazoa)
C: biota (aka cellular organisms)
D: human (aka homo sapiens)
E: suborder
F: None of the above. | [D] |
<Instruct>: Given the context 'For example, Britto and Elliot reported that the loss of abductor pollicis longus and extensor pollicis brevis in their two patients did not show functional compromise of strength and grip strength', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: homo (humans) (aka homo)
B: aides
C: human (aka homo sapiens)
D: this
E: genus
F: None of the above. | [C] |
<Instruct>: Given the context 'Genomic-Bioinformatic Analysis of Transcripts Enriched in the Third-Stage Larva of the Parasitic Nematode Ascaris suum
Abstract
Differential transcription in Ascaris suum was investigated using a genomic-bioinformatic approach.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ascaris suum]
<Options>: A: pig roundworm (aka ascaris suum)
B: ascaris gallinarum (aka heterakis gallinarum)
C: ascaris muris (aka mastophorus muris)
D: ascaris galli (aka ascaridia galli)
E: ascaris
F: None of the above. | [A] |
<Instruct>: Given the context 'A cDNA archive enriched for molecules in the infective third-stage larva (L3) of A. suum was constructed by suppressive-subtractive hybridization (SSH), and a subset of cDNAs from 3075 clones subjected to microarray analysis using cDNA probes derived from RNA from different developmental stages of A. suum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: maratus suae
B: suarius
C: suillus
D: suillus indica (aka suillus indicus)
E: suidae (pigs (aka suidae))
F: None of the above. | [F] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: galactomyces britannicus (aka geotrichum candidum)
B: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
C: caenorhabditis
D: elegans subgroup (in: flies)
E: caenorhabditis briggsae (rhabditis briggsae) (aka caenorhabditis briggsae)
F: [candida] gorgasii (candida gorgasii) (aka [candida] gorgasii)
G: rhabditis elegans (aka caenorhabditis elegans)
H: cutibacterium granulosum (corynebacterium granulosum) (aka cutibacterium granulosum)
I: bactris elegans
J: cryptococcus neoformans var. grubii cng9
K: None of the above. | [G; E] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: galactomyces britannicus (aka geotrichum candidum)
B: elegans subgroup (in: flies)
C: cutibacterium granulosum (corynebacterium granulosum) (aka cutibacterium granulosum)
D: caenorhabditis
E: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
F: cryptococcus neoformans var. grubii cng9
G: bactris elegans
H: [candida] gorgasii (candida gorgasii) (aka [candida] gorgasii)
I: rhabditis elegans (aka caenorhabditis elegans)
J: None of the above. | [I; J] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: caenorhabditis sp.
B: rhabditis briggsae (aka caenorhabditis briggsae)
C: [candida] broadrunensis (candida broadrunensis) (aka [candida] broadrunensis)
D: tomicodon briggsi
E: polyzonia elegans
F: elegans subgroup (in: flies)
G: theocolax elegans
H: pseudochaetosphaeronema briggsiae
I: corynebacterium granulosum (aka cutibacterium granulosum)
J: rhabditis elegans (aka caenorhabditis elegans)
K: None of the above. | [J; B] |
<Instruct>: Given the context 'Transcripts encoding protein kinases, protein phosphatases (and their precursors), and enolases were abundantly represented in the L3 of A. suum, as were molecules involved in cellular processes, such as ubiquitination and proteasome function, gene transcription, protein–protein interactions, and function.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus indicus (suillus indica) (aka suillus indicus)
B: sueus
C: suarius
D: maratus suae
E: suillus
F: None of the above. | [F] |
<Instruct>: Given the context 'In silico analyses inferred the C. elegans orthologues/homologues (n = 50) to be involved in apoptosis and insulin signaling (2%), ATP synthesis (2%), carbon metabolism (6%), fatty acid biosynthesis (2%), gap junction (2%), glucose metabolism (6%), or porphyrin metabolism (2%), although 34 (68%) of them could not be mapped to a specific metabolic pathway.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: theocolax elegans
B: elegans subgroup (in: flies)
C: elegans subgroup (in: mosquitos)
D: rhabditis elegans (aka caenorhabditis elegans)
E: caenorhabditis
F: None of the above. | [D] |
<Instruct>: Given the context 'Functionally, 17 (34%) of them were predicted to be associated with (non-wild-type) RNAi phenotypes in C. elegans, the majority being embryonic lethality (Emb) (13 types; 58.8%), larval arrest (Lva) (23.5%) and larval lethality (Lvl) (47%).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
B: elegans subgroup (in: flies)
C: myzomyia elegans (aka anopheles elegans)
D: uca elegans (aka tubuca elegans)
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'A genetic interaction network was predicted for these 17 C. elegans orthologues, revealing highly significant interactions for nine molecules associated with embryonic and larval development (66.9%), information storage and processing (5.1%), cellular processing and signaling (15.2%), metabolism (6.1%), and unknown function (6.7%).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caromyxa elegans (aka mutinus elegans)
B: rhabditis elegans (aka caenorhabditis elegans)
C: caenorhabditis
D: uronema elegans
E: myzomyia elegans (aka anopheles elegans)
F: None of the above. | [B] |
<Instruct>: Given the context 'The potential roles of these molecules in development are discussed in relation to the known roles of their homologues/orthologues in C. elegans and some other nematodes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: elegans subgroup (in: mosquitos)
D: enyo elegans (aka zodarion elegans)
E: uca elegans (aka tubuca elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'The results of the present study provide a basis for future functional genomic studies to elucidate molecular aspects governing larval developmental processes in A. suum and/or the transition to parasitism.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: paracoccus suum
B: actinobacillus suis
C: suarius
D: sueus
E: actinomyces suis (aka actinobaculum suis)
F: None of the above. | [F] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: other (aka unidentified)
B: trichuris ovis (trichocephalus ovis) (aka trichuris ovis)
C: caranginema americanum
D: musculus
E: ancylostomia
F: genus
G: uromyces americanus
H: ancylodes
I: trichuris trichiura (ascaris trichiura) (aka trichuris trichiura)
J: pig whipworm (aka trichuris suis)
K: acanthoscelio americanus
L: ancylostoma duodenale (agchylostoma duodenale) (aka ancylostoma duodenale)
M: trichocerca
N: new world hookworm (aka necator americanus)
O: trichocephalus muris (aka trichuris muris)
P: mocuellus americanus
Q: ancylis sp. a
R: birds (aka aves)
S: ancyluris
T: human (aka homo sapiens)
U: None of the above. | [T; L; N; I] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: human (aka homo sapiens)
B: trichuris sp (aka trichuris sp.)
C: birds (aka aves)
D: trichuris vulpis (trichocephalus vulpis) (aka trichuris vulpis)
E: ancylis diminuatana (aka ancylis diminutana)
F: new world hookworm (aka necator americanus)
G: trichoneura
H: musculus
I: ancylis
J: agchylostoma duodenale (aka ancylostoma duodenale)
K: trichocephalus ovis (aka trichuris ovis)
L: other (aka unidentified)
M: ancylus
N: biota (aka cellular organisms)
O: aporcelaimus americanum (aka aporcelaimus americanus)
P: ascaris trichiura (aka trichuris trichiura)
Q: acanthoscelio americanus
R: graphomya americana
S: ancylis sp. a
T: caranginema americanum
U: None of the above. | [A; J; F; P] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: trichocerca
B: species group
C: ascaris trichiura (aka trichuris trichiura)
D: ancyloscelis
E: ancylostoma duodenale (agchylostoma duodenale) (aka ancylostoma duodenale)
F: ancylis diminuatana (aka ancylis diminutana)
G: trichuris sp. (trichuris sp) (aka trichuris sp.)
H: caranginema americanum
I: ancylus
J: ancylis sp. a
K: homo sapiens (human) (aka homo sapiens)
L: acanthoscelio americanus
M: necator americanus (new world hookworm) (aka necator americanus)
N: trichocephaloidis
O: trichocephalus suis (aka trichuris suis)
P: graphomya americana
Q: probles
R: homo (humans) (aka homo)
S: this
T: aporcelaimus americanum (aka aporcelaimus americanus)
U: None of the above. | [K; E; M; C] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: trichocephaloidis
B: ancylis sp. a
C: species group
D: trichocephalus suis (aka trichuris suis)
E: ancyloscelis
F: this
G: trichocerca
H: acanthoscelio americanus
I: ascaris trichiura (aka trichuris trichiura)
J: probles
K: graphomya americana
L: ancylis diminuatana (aka ancylis diminutana)
M: ancylus
N: ancylostoma duodenale (agchylostoma duodenale) (aka ancylostoma duodenale)
O: caranginema americanum
P: aporcelaimus americanum (aka aporcelaimus americanus)
Q: trichuris sp. (trichuris sp) (aka trichuris sp.)
R: necator americanus (new world hookworm) (aka necator americanus)
S: homo (humans) (aka homo)
T: None of the above. | [T; N; R; I] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: musculus
B: human (aka homo sapiens)
C: esox americanus
D: psyche
E: trichoneura
F: family
G: ascaris trichiura (aka trichuris trichiura)
H: agchylostoma duodenale (aka ancylostoma duodenale)
I: uromyces americanus
J: trichuridae
K: humans (aka homo)
L: trichuris sp. (trichuris sp) (aka trichuris sp.)
M: ancylostomia
N: ancylostoma caninum (dog hookworm) (aka ancylostoma caninum)
O: ancyloscelis
P: aporcelaimus americanum (aka aporcelaimus americanus)
Q: new world hookworm (aka necator americanus)
R: ancylis sp. a
S: neomysis americana (mysis americana) (aka neomysis americana)
T: trichuris
U: None of the above. | [B; H; Q; G] |
<Instruct>: Given the context '[1], causing serious adverse effects on human health, particularly in children.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; children]
<Options>: A: suborder
B: homo (humans) (aka homo)
C: probles
D: human (aka homo sapiens)
E: macrobiotus sapiens
F: genus
G: superclass
H: this
I: infraclass
J: None of the above. | [D; D] |
<Instruct>: Given the context '[1], causing serious adverse effects on human health, particularly in children.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; children]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: kingdom
C: species
D: probles
E: eutherian mammals (aka eutheria)
F: superclass
G: humans (aka homo)
H: gallus
I: genus
J: None of the above. | [A; A] |
<Instruct>: Given the context 'Similarly, parasitic nematodes of livestock, such as pigs, also cause substantial economic losses due to subclinical and clinical diseases, with billions of dollars spent annually on the treatment and control of gastro-intestinal nematodes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: mus porcellus (aka cavia porcellus)
B: sus scrofa (pigs (aka sus scrofa))
C: boars (aka suidae)
D: gallus
E: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Compared with the free-living nematode Caenorhabditis elegans, there is very little information on fundamental molecular aspects of development in parasitic nematodes [6]–[8].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: uronema elegans
D: zodarion elegans (enyo elegans) (aka zodarion elegans)
E: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'Compared with the free-living nematode Caenorhabditis elegans, there is very little information on fundamental molecular aspects of development in parasitic nematodes [6]–[8].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: caenorhabditis vulgaris (aka caenorhabditis remanei)
B: uronema elegans
C: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
D: zodarion elegans (enyo elegans) (aka zodarion elegans)
E: None of the above. | [E] |
<Instruct>: Given the context 'Since the genome sequence of C. elegans was published in 1998 [9], many aspects of the molecular biology of this nematode have been elucidated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: bactris elegans
B: uca elegans (aka tubuca elegans)
C: rhabditis elegans (aka caenorhabditis elegans)
D: caenorhabditis vulgaris (aka caenorhabditis remanei)
E: caenorhabditis
F: None of the above. | [C] |
<Instruct>: Given the context 'For instance, microarray analyses have been used to examine developmental and gender-enriched gene expression [10],[11], and the functions of more than 96% of the C. elegans genes have been assessed by double-stranded RNA interference (RNAi, or gene silencing;', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: cyclostrongylus elegans
B: uca elegans (aka tubuca elegans)
C: bactris elegans
D: rhabditis elegans (aka caenorhabditis elegans)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'Comparative analyses of genetic data sets have shown that parasitic nematodes usually share ∼50–70% of genes with C. elegans (e.g., [19],[20]).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: uronema elegans
C: drosophila elegans
D: elegans subgroup (in: flies)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'There is similarity in other features (such as basic body plan and moulting) between C. elegans and parasitic nematodes, suggesting that some molecular pathways are relatively conserved [8],[21].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: bactris elegans
B: drosophila elegans
C: cyclostrongylus elegans
D: uronema elegans
E: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Despite the advances in genomic technologies [7], [22]–[29] and the study of C. elegans, there is a paucity of information on the genomics of parasitic nematodes of animals, particularly in relation to development.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: theocolax elegans
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: caromyxa elegans (aka mutinus elegans)
D: elegans subgroup (in: mosquitos)
E: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
F: None of the above. | [B] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: sus domesticus (aka sus scrofa domesticus)
B: guinea-pigs (aka cavia)
C: mammals (aka mammalia)
D: gallus
E: suidae (pigs (aka suidae))
F: domestic pig (aka sus scrofa domesticus)
G: bovidae
H: hominidae (great apes) (aka hominidae)
I: homo sapiens (human) (aka homo sapiens)
J: species
K: chickens (aka gallus gallus)
L: sus scrofa (pigs (aka sus scrofa))
M: boars (aka suidae)
N: macrobiotus sapiens
O: None of the above. | [I; L; L] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: macrobiotus sapiens
B: domestic pig (aka sus scrofa domesticus)
C: kingdom
D: hominoidea (apes (aka hominoidea))
E: hominidae (great apes) (aka hominidae)
F: domestic guinea pig (aka cavia porcellus)
G: pigs (aka sus scrofa) (aka sus scrofa)
H: pigs (aka suidae) (aka suidae)
I: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
J: gallus domesticus (aka gallus gallus)
K: human (aka homo sapiens)
L: gallus
M: None of the above. | [K; G; G] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: pig (aka sus scrofa) (aka sus scrofa)
B: guinea-pigs (aka cavia)
C: primate (aka primates)
D: boars (aka suidae)
E: suidae (pigs (aka suidae))
F: guinea pig (aka cavia porcellus)
G: human (aka homo sapiens)
H: genus
I: neandertal man (aka homo sapiens neanderthalensis)
J: chickens (aka gallus gallus)
K: kingdom
L: sus domestica (aka sus scrofa domesticus)
M: None of the above. | [G; A; A] |
<Instruct>: Given the context 'In the present study, Ascaris from pigs was used to study molecules abundantly transcribed in the infective third-stage larva (L3).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: domestic guinea pig (aka cavia porcellus)
B: pig (aka sus scrofa) (aka sus scrofa)
C: boars (aka suidae)
D: sus domesticus (aka sus scrofa domesticus)
E: gallus
F: None of the above. | [B] |
<Instruct>: Given the context 'Following the oral ingestion of Ascaris eggs by the host (human or pig), L3s are released and then invade/penetrate predominantly the caecal wall', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; pig]
<Options>: A: humans (aka homo)
B: avian (aka aves)
C: chickens (aka gallus gallus)
D: gallus
E: animals (aka metazoa)
F: homo sapiens (human) (aka homo sapiens)
G: pig (aka sus scrofa) (aka sus scrofa)
H: suidae (pigs (aka suidae))
I: macrobiotus sapiens
J: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
K: None of the above. | [F; G] |
<Instruct>: Given the context 'Following the oral ingestion of Ascaris eggs by the host (human or pig), L3s are released and then invade/penetrate predominantly the caecal wall', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; pig]
<Options>: A: pigs (aka sus scrofa) (aka sus scrofa)
B: animals (aka metazoa)
C: birds (aka aves)
D: genus
E: sus domesticus (aka sus scrofa domesticus)
F: bovidae
G: human (aka homo sapiens)
H: chickens (aka gallus gallus)
I: gallus
J: cellular organisms (biota) (aka cellular organisms)
K: None of the above. | [G; A] |
<Instruct>: Given the context 'Here, we constructed an L3-enriched cDNA library using the method of suppressive-subtractive hybridization (SSH), explored transcription of a representative subset of molecules by microarray analysis and conducted bioinformatic analyses to characterize these molecules, map them to biochemical pathways and predict genetic interactions based on comparisons with C. elegans and/or other organisms.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: drosophila elegans
D: caenorhabditis
E: caromyxa elegans (aka mutinus elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'Here, we constructed an L3-enriched cDNA library using the method of suppressive-subtractive hybridization (SSH), explored transcription of a representative subset of molecules by microarray analysis and conducted bioinformatic analyses to characterize these molecules, map them to biochemical pathways and predict genetic interactions based on comparisons with C. elegans and/or other organisms.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: caromyxa elegans (aka mutinus elegans)
D: drosophila elegans
E: None of the above. | [E] |
<Instruct>: Given the context 'Materials and Methods
Production of Different Developmental Stages of Ascaris
Experimental pigs (8–12 weeks of age) were purchased from and maintained in the Experimental Animal Center of South China Agricultural University.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: domestic guinea pig (aka cavia porcellus)
B: gallus
C: gallus domesticus (aka gallus gallus)
D: pig (aka sus scrofa) (aka sus scrofa)
E: guinea-pigs (aka cavia)
F: None of the above. | [D] |
<Instruct>: Given the context 'These pigs were treated humanely, according to the Animal Ethics procedures and guidelines of the People's Republic of China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: chickens (aka gallus gallus)
B: gallus
C: sus scrofa (pigs (aka sus scrofa))
D: sus domestica (aka sus scrofa domesticus)
E: guinea-pigs (aka cavia)
F: None of the above. | [C] |
<Instruct>: Given the context 'Adult worms (males and females) of A. suum were collected from the small intestines of pigs from an abattoir in Shenzhen, China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pigs]
<Options>: A: gallus
B: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
C: sueus
D: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
E: gallus domesticus (aka gallus gallus)
F: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
G: sus scrofa (pigs (aka sus scrofa))
H: suillus indicus (suillus indica) (aka suillus indicus)
I: guinea-pigs (aka cavia)
J: eubacterium suis (aka actinobaculum suis)
K: None of the above. | [K; G] |
<Instruct>: Given the context 'Adult worms (males and females) of A. suum were collected from the small intestines of pigs from an abattoir in Shenzhen, China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pigs]
<Options>: A: gallus
B: maratus suae
C: suidae (pigs (aka suidae))
D: suaeda fruticosa mult. auct. (aka suaeda vera)
E: guinea pig (aka cavia porcellus)
F: sus scrofa domestica (aka sus scrofa domesticus)
G: sueus
H: pig (aka sus scrofa) (aka sus scrofa)
I: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
J: gallus domesticus (aka gallus gallus)
K: None of the above. | [K; H] |
<Instruct>: Given the context 'Infective eggs and infective L3s of A. suum were produced according to the methods described previously [38].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
B: suillus indica (aka suillus indicus)
C: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
D: aerococcus suis
E: maratus suae
F: None of the above. | [F] |
<Instruct>: Given the context 'In brief, eggs from the uteri of adult females of A. suum were collected and incubated at 28°C for 28 days to allow them to develop to infective eggs (containing infective L3s).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillia
B: paracoccus suum
C: suillus indicus (suillus indica) (aka suillus indicus)
D: suarius
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'Following the experimental infection of helminth-free pigs with infective Ascaris eggs as described previously [39], the L3s from livers and in lungs as well as L4s in intestines were isolated according to an established method [40].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: pigs (aka suidae) (aka suidae)
B: sus scrofa (pigs (aka sus scrofa))
C: gallus
D: domestic pig (aka sus scrofa domesticus)
E: gallus domesticus (aka gallus gallus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)
Total RNA was isolated from adult females and males, different larval stages or eggs of A. suum using TriPure reagent (Roche) as recommended by the manufacturer.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus indica (aka suillus indicus)
B: suarius
C: paracoccus suum
D: maratus suae
E: eubacterium suis (aka actinobaculum suis)
F: None of the above. | [F] |
<Instruct>: Given the context 'The cDNA obtained following SSH was cloned into the pGEM-T Easy plasmid vector (Promega) and competent Escherichia coli (JM109) transformed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: enterobacteria (aka enterobacteriaceae)
B: escherichia phage
C: enterococcus coli (aka escherichia coli)
D: escherichia coli (strain b) (aka escherichia coli b)
E: escherichia coli 1a
F: None of the above. | [C] |
<Instruct>: Given the context 'Sixteen blanks (using spotting solution only) and the same number of negative (irrelevant cDNAs with no relationship to Ascaris) were also printed on to slides and served as negative controls; β-actin of A. suum served as a positive control to assess the efficiency of labeling and hybridization.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus
B: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
C: suillia
D: aerococcus suis
E: actinobacillus suis
F: None of the above. | [F] |
<Instruct>: Given the context 'Labeling of cDNA Probes with Fluorescent Dyes, and Microarray Analysis
The cDNAs produced from total RNA from A. suum eggs, infective L3s, L3s isolated from pig liver or lung, fourth-stage larvae (L4s), adult males or females [as described in the section ‘Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)’] were labeled with cyanine dyes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pig]
<Options>: A: actinobacillus suis
B: boars (aka suidae)
C: suarius
D: bovidae
E: mus porcellus (aka cavia porcellus)
F: gallus domesticus (aka gallus gallus)
G: sueus
H: sus scrofa (pigs (aka sus scrofa))
I: suiformes (aka suina)
J: suillia
K: None of the above. | [K; H] |
<Instruct>: Given the context 'Labeling of cDNA Probes with Fluorescent Dyes, and Microarray Analysis
The cDNAs produced from total RNA from A. suum eggs, infective L3s, L3s isolated from pig liver or lung, fourth-stage larvae (L4s), adult males or females [as described in the section ‘Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)’] were labeled with cyanine dyes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pig]
<Options>: A: gallus domesticus (aka gallus gallus)
B: pigs (aka sus scrofa) (aka sus scrofa)
C: suillia
D: actinobacillus suis
E: bovidae
F: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
G: actinomyces suis (aka actinobaculum suis)
H: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
I: mus porcellus (aka cavia porcellus)
J: sueus
K: None of the above. | [K; B] |
<Instruct>: Given the context 'Microarray slides were incubated with a pre-hybridization solution [5×SSC, 1% bovine serum albumin (BSA), 0.1% sodium dodecyl-sulphate (SDS)] for 6 h at 42°C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine]
<Options>: A: bos sp.
B: bos indicus (bos primigenius indicus) (aka bos indicus)
C: bos (cattle) (aka bos)
D: bovidae
E: bovine (aka bos taurus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Double-stranded cDNA was synthesized from total RNA (separately) from each stage or sex of A. suum using reverse transcriptase (Superscript III, Invitrogen).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillia
B: maratus suae
C: actinomyces suis (aka actinobaculum suis)
D: actinobacillus suis
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'The PCR amplification of a portion (209 bp) of the β-actin gene (accession no. BI594141) using forward primer (5′-CTCGAAACAAGAATACGATG-3′) and reverse primer (5′- ACATGTGCCGTTGTATGATG-3′), previously determined to be present in all developmental stages and both sexes of A. suum', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus
B: eubacterium suis (aka actinobaculum suis)
C: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
D: maratus suae
E: suaeda fruticosa mult. auct. (aka suaeda vera)
F: None of the above. | [F] |
<Instruct>: Given the context 'Following the processing of the sequences (i.e., removal of vector sequences, quality assurance and clustering), contigs or singletons from individual clusters were subjected to BLASTx (NCBI: www.ncbi.nlm.nih.gov) and BLASTn (EMBL-EBI Parasite Genome Blast Server: www.ebi.ac.uk) analysis to identify putative homologues in C. elegans, other nematodes and other organisms (e-value of ≤1e-05).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: flies)
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: caenorhabditis sp.
D: uronema elegans
E: bactris elegans
F: None of the above. | [B] |
<Instruct>: Given the context 'Following the processing of the sequences (i.e., removal of vector sequences, quality assurance and clustering), contigs or singletons from individual clusters were subjected to BLASTx (NCBI: www.ncbi.nlm.nih.gov) and BLASTn (EMBL-EBI Parasite Genome Blast Server: www.ebi.ac.uk) analysis to identify putative homologues in C. elegans, other nematodes and other organisms (e-value of ≤1e-05).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: flies)
B: bactris elegans
C: uronema elegans
D: caenorhabditis sp.
E: None of the above. | [E] |
<Instruct>: Given the context 'WormBase (www.wormbase.org) was interrogated extensively for relevant information on C. elegans homologues/orthologues, including RNAi phenotypic, transcriptomic, proteomic and interactomic data.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis
B: bactris elegans
C: uca elegans (aka tubuca elegans)
D: caromyxa elegans (aka mutinus elegans)
E: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'ESTs with homologues/orthologues in C. elegans and other nematodes were also subjected to analysis employing the KEGG Orthology-Based Annotation System (KOBAS) (www.kobas.cbi.pku.edu.cn), which predicts the biochemical pathways in which molecules are involved.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
B: caromyxa elegans (aka mutinus elegans)
C: uca elegans (aka tubuca elegans)
D: caenorhabditis vulgaris (aka caenorhabditis remanei)
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'The open reading frames (ORFs) inferred from selected ESTs with orthologues in C. elegans were also subjected to “secretome analysis” using the program SignalP v.2.0 www.cbs.dtu.dk/services/SignalP/), employing both the neural network and hidden Markov models to predict signal peptides and/or anchors [46]–[48].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uca elegans (aka tubuca elegans)
B: uronema elegans
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: caenorhabditis sp.
E: myzomyia elegans (aka anopheles elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'The method established by Zhong and Sternberg [53] was used to predict the interactions for C. elegans orthologues of the L3-enriched molecules from Ascaris.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: theocolax elegans
C: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
D: bactris elegans
E: myzomyia elegans (aka anopheles elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: saccharomyceta
C: humans (aka homo)
D: bactrocera <subgenus> (bactrocera (bactrocera)) (aka bactrocera <subgenus>)
E: saccharomycodes
F: peromyscus
G: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
H: mus musculus (house mouse) (aka mus musculus)
I: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
J: fruit fly (aka drosophila melanogaster)
K: saccharomyces hansenii (aka debaryomyces hansenii)
L: genus
M: bactrocera (bactrocera) melanogaster (aka bactrocera melanogaster)
N: candida/saccharomycetales (aka candida/saccharomycales clade)
O: mycoderma cerevisiae (aka saccharomyces cerevisiae)
P: birds (aka aves)
Q: kingdom
R: mus cricetus (aka cricetus cricetus)
S: fruit flies (aka drosophila <flies,genus>)
T: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
U: None of the above. | [J; O; H; A] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: bactrocera <subgenus> (bactrocera (bactrocera)) (aka bactrocera <subgenus>)
B: mouse (aka mus <genus>)
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus) (aka saccharomyces cf. cerevisiae/paradoxus)
E: this
F: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
G: drosophila <flies,subgenus> (drosophila) (aka drosophila <flies,subgenus>)
H: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
I: saccharomyces cerevisiae x saccharomyces mikatae
J: avian (aka aves)
K: house mouse (aka mus musculus)
L: mus molossinus (aka mus musculus molossinus)
M: saccharomyces cf. cerevisiae
N: drosophila <basidiomycete fungi> (drosophila) (aka drosophila <basidiomycete fungi>)
O: fruit fly (aka drosophila melanogaster)
P: human (aka homo sapiens)
Q: mycoderma cerevisiae (aka saccharomyces cerevisiae)
R: saccharomyces albicans (aka candida albicans)
S: macrobiotus sapiens
T: probles
U: None of the above. | [O; Q; K; P] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: mus musculus (house mouse) (aka mus musculus)
B: saccharomycotina (budding yeasts & others) (aka saccharomycotina)
C: bactrocera <subgenus> (bactrocera (bactrocera)) (aka bactrocera <subgenus>)
D: brewer's yeast (aka saccharomyces cerevisiae)
E: probles
F: saccharomyces cerevisiae x saccharomyces mikatae
G: mus molossinus (aka mus musculus molossinus)
H: mus (aka mus <genus>) (aka mus <genus>)
I: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
J: macrobiotus sapiens
K: saccharomycodes
L: kingdom
M: diptera (flies) (aka diptera)
N: homo sapiens (human) (aka homo sapiens)
O: saccharomyces cerevisiae or paradoxus (aka saccharomyces cf. cerevisiae/paradoxus)
P: genus
Q: drosophila <flies,subgenus> (drosophila) (aka drosophila <flies,subgenus>)
R: fruit fly (aka drosophila melanogaster)
S: bactrocera (bactrocera) melanogaster (aka bactrocera melanogaster)
T: mice (aka mus sp.) (aka mus sp.)
U: None of the above. | [R; D; A; N] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: saccharomyces cf. cerevisiae
B: mus molossinus (aka mus musculus molossinus)
C: drosophila (aka drosophila <flies,subgenus>)
D: fruit flies (aka drosophila <flies,genus>)
E: saccharomyces lactis (aka kluyveromyces lactis)
F: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
G: suborder
H: saccharomyces sp.
I: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
J: homo sapiens (human) (aka homo sapiens)
K: probles
L: homo (humans) (aka homo)
M: mammals (aka mammalia)
N: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
O: medfly (aka ceratitis capitata)
P: house mouse (aka mus musculus)
Q: drosophila (aka drosophila <basidiomycete fungi>)
R: saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus) (aka saccharomyces cf. cerevisiae/paradoxus)
S: fruit fly (aka drosophila melanogaster)
T: mus <subgenus> (mus (aka mus <subgenus>))
U: None of the above. | [S; F; P; J] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: mus <subgenus> (mus (aka mus <subgenus>))
B: drosophila (aka drosophila <basidiomycete fungi>)
C: mammals (aka mammalia)
D: mus molossinus (aka mus musculus molossinus)
E: saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus) (aka saccharomyces cf. cerevisiae/paradoxus)
F: fruit fly (aka drosophila melanogaster)
G: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
H: medfly (aka ceratitis capitata)
I: saccharomyces lactis (aka kluyveromyces lactis)
J: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
K: saccharomyces sp.
L: saccharomyces cf. cerevisiae
M: fruit flies (aka drosophila <flies,genus>)
N: homo sapiens (human) (aka homo sapiens)
O: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
P: probles
Q: suborder
R: drosophila (aka drosophila <flies,subgenus>)
S: homo (humans) (aka homo)
T: None of the above. | [F; O; T; N] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: myzomyia elegans (aka anopheles elegans)
B: elegans subgroup (in: mosquitos)
C: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
D: theocolax elegans
E: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Results
To identify molecules transcribed abundantly in the L3 of A. suum, an enriched cDNA library was constructed by SSH.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: actinobacillus suis
B: suidae (pigs (aka suidae))
C: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
D: aerococcus suis
E: suillus indica (aka suillus indicus)
F: None of the above. | [F] |
<Instruct>: Given the context 'Of the 2671 (duplicate) spots, 1526 had a significant difference in hybridization between infective L3 cDNA and cDNAs from all other stages or sexes of A. suum, of which 515 had a >2.0-fold increased hybridization for the L3.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
B: suillus
C: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
D: suarius
E: sueus
F: None of the above. | [F] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: uronema elegans
B: rasbora brigittae (aka boraras brigittae)
C: sabacon briggsi
D: actinomyces suis (aka actinobaculum suis)
E: rhabditis elegans (aka caenorhabditis elegans)
F: cryptococcus neoformans var. grubii cng9
G: maratus suae
H: suillus
I: bactris elegans
J: cryptococcus neoformans h99 (aka cryptococcus neoformans var. grubii h99)
K: suidae (pigs (aka suidae))
L: elegans subgroup (in: flies)
M: actinobacillus suis
N: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
O: caenorhabditis briggsae (rhabditis briggsae) (aka caenorhabditis briggsae)
P: None of the above. | [P; E; O] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: suillia
C: paracoccus suum
D: aerococcus suis
E: rhabditis elegans (aka caenorhabditis elegans)
F: suidae (pigs (aka suidae))
G: myzomyia elegans (aka anopheles elegans)
H: briggsus
I: caromyxa elegans (aka mutinus elegans)
J: rhabditis briggsae (aka caenorhabditis briggsae)
K: sueus
L: histiogamphelus briggsii
M: cutibacterium granulosum (corynebacterium granulosum) (aka cutibacterium granulosum)
N: trichomycterus brigadeirensis
O: cyclostrongylus elegans
P: None of the above. | [P; E; J] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: caenorhabditis briggsae (rhabditis briggsae) (aka caenorhabditis briggsae)
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: rasbora brigittae (aka boraras brigittae)
D: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
E: suiformes (aka suina)
F: zodarion elegans (enyo elegans) (aka zodarion elegans)
G: bactris elegans
H: cryptococcus neoformans h99 (aka cryptococcus neoformans var. grubii h99)
I: carinogammarinae
J: paracoccus suum
K: myzomyia elegans (aka anopheles elegans)
L: actinobacillus suis
M: suaeda vera (suaeda fruticosa mult. auct.) (aka suaeda vera)
N: histiogamphelus briggsii
O: caenorhabditis
P: None of the above. | [P; B; A] |
<Instruct>: Given the context 'Comparative analysis specifically against A. suum EST data sets (n∼42,000) available in public databases confirmed independently that the majority of molecules (>60%) were present exclusively in the infective L3 stage or were orphans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
B: suillus
C: sueus
D: maratus suae
E: actinobacillus suis
F: None of the above. | [F] |
<Instruct>: Given the context '[54], this approach was employed to predict the classification and gene function of molecules enriched in infective L3 of A. suum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: actinobacillus suis
B: paracoccus suum
C: maratus suae
D: suarius
E: suiformes (aka suina)
F: None of the above. | [F] |
<Instruct>: Given the context 'A focused KOBAS analysis inferred the 50 C. elegans orthologues/homologues to be involved in apoptosis and insulin signaling (2%), ATP synthesis (2%), carbon metabolism (6%), fatty acid biosynthesis (2%), gap junction (2%), glucose metabolism (6%) or porphyrin metabolism (2%), although 34 (68%) of them could not be mapped to a specific metabolic pathway (Table 2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uca elegans (aka tubuca elegans)
B: caenorhabditis
C: rhabditis elegans (aka caenorhabditis elegans)
D: theocolax elegans
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'Functionally, 17 (34%) of the 50 molecules were associated with (non-wild-type) RNAi phenotypes in C. elegans, the majority displaying embryonic lethality (Emb) (13 types; 58.8%), larval arrest (Lva) (23.5%) and larval lethality (Lvl) (47%) (Table 2).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis vulgaris (aka caenorhabditis remanei)
B: zodarion elegans (enyo elegans) (aka zodarion elegans)
C: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
D: caenorhabditis
E: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Extending this analysis, a relatively complex genetic interaction network was predicted for the 17 C. elegans orthologues (i.e., with non-wild-type RNAi phenotypes) (see Table S2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: theocolax elegans
D: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
E: bactris elegans
F: None of the above. | [B] |
<Instruct>: Given the context 'Statistically highly significant interactions were predicted for nine of the C. elegans genes; the top five interactors are displayed in Fig.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: enyo elegans (aka zodarion elegans)
B: myzomyia elegans (aka anopheles elegans)
C: elegans subgroup (in: mosquitos)
D: rhabditis elegans (aka caenorhabditis elegans)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'The gene ontology categories for eight selected C. elegans genes (F33D11.10, F55A12.8, kin-2, mec-12, mup-2, pab-1, rpl-22 and T21B10.2) included: embryonic development, egg hatching, larval development and/or growth.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: theocolax elegans
C: caenorhabditis
D: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
E: enyo elegans (aka zodarion elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'The C. elegans homologue egl-3 was predicted to be involved in proteolysis (see www.wormbase.org).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: theocolax elegans
B: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
C: caromyxa elegans (aka mutinus elegans)
D: caenorhabditis sp.
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'The C. elegans homologue egl-3 was predicted to be involved in proteolysis (see www.wormbase.org).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: theocolax elegans
B: caromyxa elegans (aka mutinus elegans)
C: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
D: caenorhabditis sp.
E: None of the above. | [E] |
<Instruct>: Given the context 'All nine C. elegans orthologues were predicted to interact directly with a total of 296 (range: 5–75) other genes and, in particular, a direct genetic interaction was predicted between pab-1 and T21B10.2 (Fig. 2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
B: myzomyia elegans (aka anopheles elegans)
C: elegans subgroup (in: flies)
D: rhabditis elegans (aka caenorhabditis elegans)
E: theocolax elegans
F: None of the above. | [D] |
<Instruct>: Given the context 'Discussion
The present study investigated transcripts in infective L3s of A. suum using a genomic-bioinformatic platform.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: sueus
B: suillus
C: suarius
D: actinomyces suis (aka actinobaculum suis)
E: aerococcus suis
F: None of the above. | [F] |
<Instruct>: Given the context 'The focus was on comparisons with C. elegans homologues/orthologues, because the entire genome sequence of this nematode is known [9] and because there is a wealth of information on the localization and functionality of its molecules (www.wormbase.org; http://elegans.bcgsc.bc.ca/knockout.shtml).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uca elegans (aka tubuca elegans)
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
E: uronema elegans
F: None of the above. | [C] |
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