instruction stringlengths 225 2.35k | input stringlengths 89 1.5k | response stringclasses 698 values |
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<Instruct>: Given the context 'The functions of most genes in C. elegans have been assessed using RNAi (e.g., [14],[15],[17],[55],[56]) in the hermaphroditic stage, whereas there is a paucity of functional information available for Ascaris and other parasitic nematodes of animals', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uca elegans (aka tubuca elegans)
B: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
C: rhabditis elegans (aka caenorhabditis elegans)
D: elegans subgroup (in: flies)
E: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'Of the 91 clusters of molecules categorized, 50 (54.9%) had C. elegans homologues/orthologues with loss-of-function phenotypes could be mapped to key pathways.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis sp.
B: caenorhabditis
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: theocolax elegans
E: uronema elegans
F: None of the above. | [C] |
<Instruct>: Given the context 'The statistically significant genetic interactions predicted for 9 of the 50 C. elegans orthologues [namely egl-3, F33D11.10, F55A12.8, kin-2, mec-12, mup-2, pab-1, rpl-22 and T21B10.2 ( = enol-1)] and the interaction network included genes encoding kinases, alpha-tubulins, enolases, troponin and other named and unnamed proteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: drosophila elegans
B: elegans subgroup (in: flies)
C: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
D: rhabditis elegans (aka caenorhabditis elegans)
E: caenorhabditis sp.
F: None of the above. | [D] |
<Instruct>: Given the context 'Eight of these molecules (enol-1, pab-1, F33D11.10, rpl-22, F55A12.8 mec-12, mup-2 and kin-2) have known or predicted roles in embryonic and larval growth and development, gamete generation, locomotory behaviour or other biological processes in C. elegans (see www.wormbase.org).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: mosquitos)
B: cyclostrongylus elegans
C: caenorhabditis vulgaris (aka caenorhabditis remanei)
D: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
E: caenorhabditis
F: None of the above. | [D] |
<Instruct>: Given the context 'Nonetheless, enolases are often detected in the excretory/secretory (ES) products of parasitic helminths, including adult A. suum', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillia
B: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
C: aerococcus suis
D: suidae (pigs (aka suidae))
E: suarius
F: None of the above. | [F] |
<Instruct>: Given the context 'The enol-1 orthologue of C. elegans has been predicted to interact specifically with the polyadenylate binding protein gene, pab-1, inferred to be involved in coordinated gene transcription and expression during normal larval development', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: bactris elegans
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: uca elegans (aka tubuca elegans)
D: caenorhabditis sp.
E: caenorhabditis vulgaris (aka caenorhabditis remanei)
F: None of the above. | [B] |
<Instruct>: Given the context 'Present evidence suggests that the expression of PAB-1 is regulated by an oligo-pyrimidine tract in response to cell growth and relates to coordinated growth regulation in C. elegans [62].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: rhabditis elegans (aka caenorhabditis elegans)
D: elegans subgroup (in: flies)
E: caenorhabditis sp.
F: None of the above. | [C] |
<Instruct>: Given the context 'Present evidence suggests that the expression of PAB-1 is regulated by an oligo-pyrimidine tract in response to cell growth and relates to coordinated growth regulation in C. elegans [62].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis sp.
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
D: elegans subgroup (in: flies)
E: None of the above. | [E] |
<Instruct>: Given the context 'Another gene (F33D11.10; EST code 4F10; see Table 2) which encodes an ATP-dependent RNA helicase and is associated with embryonic lethal (Emb) and larval lethal (Lvl) RNAi phenotypes, was shown to be highly transcribed in infective L3s of A. suum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suiformes (aka suina)
B: sueus
C: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
D: aerococcus suis
E: eubacterium suis (aka actinobaculum suis)
F: None of the above. | [F] |
<Instruct>: Given the context 'Helicases are involved in a variety of RNA metabolic processes, including translation initiation, pre-mRNA splicing, pre-rRNA processing, rRNA maturation and RNA degradation [63], and are crucial for life cycle progression, sex determination and early embryogenesis in C. elegans [60].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
B: uca elegans (aka tubuca elegans)
C: elegans subgroup (in: flies)
D: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
E: theocolax elegans
F: None of the above. | [D] |
<Instruct>: Given the context 'The high transcription levels of a homologue/orthologue in the L3 of A. suum might suggest a similar role in this ascaridoid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: eubacterium suis (aka actinobaculum suis)
B: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
C: suillus
D: suaeda vera (suaeda fruticosa mult. auct.) (aka suaeda vera)
E: suina (suiformes) (aka suina)
F: None of the above. | [F] |
<Instruct>: Given the context 'The high transcription level for the ribosomal protein gene homologue rpl-22 (large subunit family member; EST code 26G12, see Table 2) in the infective L3 of A. suum compared with other developmental stages is likely to reflect the substantial rate of cell growth in this stage [64].
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda fruticosa mult. auct. (aka suaeda vera)
B: suidae (pigs (aka suidae))
C: suillus
D: suillia
E: suarius
F: None of the above. | [F] |
<Instruct>: Given the context 'The gene (F55A12.8, EST code 4G11; see Table 2) encoding an acetyl-transferase with a putative ATPase domain, shown to be enriched in the L3 of A. suum, was predicted to interact with 75 other genes all involved in energy production and/or RNA processing (see Table S2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus indica (aka suillus indicus)
B: pigs (aka suidae) (aka suidae)
C: suillia
D: suarius
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'Several molecules involved in ATP synthesis and mitochondrial pathways (e.g., cytochrome oxidase c subunits 1, 2 and 3, ADP/ATP translocases, NADH dehydrogenases, ATPases and ATP synthetases) have been reported previously to be highly represented in the L3 stage of Anisakis simplex', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [anisakis simplex]
<Options>: A: anisakis sp. hc-2005
B: anisakis simplex (ascaris simplex) (aka anisakis simplex)
C: anisakis sp. laaib
D: echium simplex
E: anisakis sp. laig
F: None of the above. | [B] |
<Instruct>: Given the context 'There is also likely to be a substantial energy requirement for muscle contraction linked to larval motility in A. suum, as the L3s penetrate the caecal wall in the porcine host, before undergoing hepato-pulmonary migration [35].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda fruticosa mult. auct. (aka suaeda vera)
B: paracoccus suum
C: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
D: suidae (pigs (aka suidae))
E: actinobacillus suis
F: None of the above. | [F] |
<Instruct>: Given the context 'Accordingly, genes encoding a specialized tubulin expressed in mechanoreceptors (mec-12, EST code 13E09) and a troponin (mup-2, EST code 01G03; see Table 2), both predicted to interact with a total number of 32 tubulin- and myosin-encoding genes, also supported a link to extensive muscle contraction and motility in A. suum L3s.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: maratus suae
B: actinobacillus suis
C: actinomyces suis (aka actinobaculum suis)
D: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
E: suaeda fruticosa mult. auct. (aka suaeda vera)
F: None of the above. | [F] |
<Instruct>: Given the context 'A homologue encoded by egl-3 was shown to be highly transcribed in the L3 of A. suum; EGL-3 is predicted to be a pro-hormone convertase involved in the maturation of neuropeptides and could be associated with mechano-sensory responses and touch sensitivity linked to the host invasion.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: eubacterium suis (aka actinobaculum suis)
B: suillus indicus (suillus indica) (aka suillus indicus)
C: aerococcus suis
D: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
E: suillus
F: None of the above. | [F] |
<Instruct>: Given the context 'Gene silencing of kin-2 in C. elegans leads to phenotypes, such as larval lethal (Lvl), larval arrest (Lva), body morphology defect (Bmd), dumpy (Dpy), uncoordinated (Unc) and sterile progeny (Stp) (www.wormbase.org), suggesting that its homologue in A. suum is central to larval maturation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans; a. suum]
<Options>: A: maratus suae
B: aerococcus suis
C: suillia
D: suarius
E: cyclostrongylus elegans
F: caromyxa elegans (aka mutinus elegans)
G: actinobacillus suis
H: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
I: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
J: elegans subgroup (in: mosquitos)
K: None of the above. | [I; K] |
<Instruct>: Given the context 'Gene silencing of kin-2 in C. elegans leads to phenotypes, such as larval lethal (Lvl), larval arrest (Lva), body morphology defect (Bmd), dumpy (Dpy), uncoordinated (Unc) and sterile progeny (Stp) (www.wormbase.org), suggesting that its homologue in A. suum is central to larval maturation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans; a. suum]
<Options>: A: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
B: pigs (aka suidae) (aka suidae)
C: theocolax elegans
D: suiformes (aka suina)
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: myzomyia elegans (aka anopheles elegans)
G: suaeda fruticosa mult. auct. (aka suaeda vera)
H: caromyxa elegans (aka mutinus elegans)
I: rhabditis elegans (aka caenorhabditis elegans)
J: suarius
K: None of the above. | [I; K] |
<Instruct>: Given the context 'The KOBAS analysis predicted the protein KIN-2 to be involved in the insulin-signaling pathway, previously implicated in controlling the exit from dauer in C. elegans and the activation of L3s of the canine hookworm, Ancylostoma caninum, following exsheathment', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans; canine hookworm; ancylostoma caninum]
<Options>: A: ascaris filicollis (aka nematodirus filicollis)
B: ancyloscelis
C: pig roundworm (aka ascaris suum)
D: uca elegans (aka tubuca elegans)
E: new world hookworm (aka necator americanus)
F: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
G: ancylostoma cf. caninum
H: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
I: drosophila elegans
J: ancylopus
K: caenorhabditis vulgaris (aka caenorhabditis remanei)
L: ancylocaris
M: ancyluris
N: dog hookworm (aka ancylostoma caninum)
O: None of the above. | [F; N; N] |
<Instruct>: Given the context 'The KOBAS analysis predicted the protein KIN-2 to be involved in the insulin-signaling pathway, previously implicated in controlling the exit from dauer in C. elegans and the activation of L3s of the canine hookworm, Ancylostoma caninum, following exsheathment', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans; canine hookworm; ancylostoma caninum]
<Options>: A: myzomyia elegans (aka anopheles elegans)
B: ascaris filicollis (aka nematodirus filicollis)
C: drosophila elegans
D: rat tapeworm (aka hymenolepis diminuta)
E: caenorhabditis sp.
F: dog hookworm (aka ancylostoma caninum)
G: ancylopus
H: ancylostomia
I: uca elegans (aka tubuca elegans)
J: ancylostoma braziliense
K: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
L: ancylodes
M: cattle hookworm (aka bunostomum phlebotomum)
N: ancylostoma ceylanicum
O: None of the above. | [K; F; F] |
<Instruct>: Given the context 'The KOBAS analysis predicted the protein KIN-2 to be involved in the insulin-signaling pathway, previously implicated in controlling the exit from dauer in C. elegans and the activation of L3s of the canine hookworm, Ancylostoma caninum, following exsheathment', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans; canine hookworm; ancylostoma caninum]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: red stomach worm (aka haemonchus contortus)
C: taenia canina (aka dipylidium caninum)
D: dog hookworm (aka ancylostoma caninum)
E: ancylodes
F: ancylis diminuatana (aka ancylis diminutana)
G: bactris elegans
H: dog heartworm nematode (aka dirofilaria immitis)
I: uronema elegans
J: elegans subgroup (in: flies)
K: feline roundworm (aka toxocara cati)
L: caenorhabditis sp.
M: ancylostoma ceylanicum
N: None of the above. | [A; D; D] |
<Instruct>: Given the context 'In a recent study, Brand and Hawdon [68] were able to inhibit (with a phosphoinositide-3-OH-kinase inhibitor) the activation of infective L3s of both of the hookworms Ancylostoma caninum and Ancylostoma ceylanicum via the insulin signaling pathway, thus lending some credence to the hypothesis that this pathway plays an critical role in regulating the transition from the free-living to the parasitic stage [68].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ancylostoma caninum; ancylostoma ceylanicum]
<Options>: A: ancylus sp. e3.1
B: ancylocaris
C: ancylostoma ceylanicum
D: ancylostoma
E: dog hookworm (aka ancylostoma caninum)
F: ancylis
G: ancylus sp. rjd-2004
H: ancylus sp. e1.1
I: ancylostomatidae
J: ancylus lapicidus
K: None of the above. | [E; C] |
<Instruct>: Given the context 'In a recent study, Brand and Hawdon [68] were able to inhibit (with a phosphoinositide-3-OH-kinase inhibitor) the activation of infective L3s of both of the hookworms Ancylostoma caninum and Ancylostoma ceylanicum via the insulin signaling pathway, thus lending some credence to the hypothesis that this pathway plays an critical role in regulating the transition from the free-living to the parasitic stage [68].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ancylostoma caninum; ancylostoma ceylanicum]
<Options>: A: dipylidium caninum (taenia canina) (aka dipylidium caninum)
B: ancylostoma ceylanicum
C: ancylocnemis
D: ancylostoma
E: ancylostoma braziliense
F: ancylostomia
G: ancylus sp. e3.3
H: ancylus sp. rjd-2004
I: dog hookworm (aka ancylostoma caninum)
J: None of the above. | [I; B] |
<Instruct>: Given the context 'Recently, it has been proposed that transcriptional and feeding responses to serum-stimulation in Ancylostoma caninum are regulated by parallel systems, with the insulin signaling pathway playing a significant role in the ‘resumption of feeding’ in activated larvae [69].
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ancylostoma caninum]
<Options>: A: dog hookworm (aka ancylostoma caninum)
B: ancylis
C: ancylis diminuatana (aka ancylis diminutana)
D: dipylidium caninum (taenia canina) (aka dipylidium caninum)
E: ancylostomia
F: None of the above. | [A] |
<Instruct>: Given the context 'As already proposed for adult stages of H. contortus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h. contortus]
<Options>: A: histophilus ovis (aka histophilus somni)
B: miconchinae
C: tmeticus contortus (aka mermessus contortus)
D: red stomach worm (aka haemonchus contortus)
E: echinorhynchus contortus (aka polymorphus contortus)
F: None of the above. | [D] |
<Instruct>: Given the context 'Other protein kinases, such as PEPCK, and phosphatases, were shown herein to be transcribed at high levels in the L3 stage compared with other developmental stages of A. suum (see Table 2), which is in accordance to findings reported recently for Anisakis simplex [65].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; anisakis simplex]
<Options>: A: paracoccus suum
B: anisakis sp. hc-2005
C: anisakis sp. ca-2012
D: herring worm (aka anisakis simplex)
E: anisakis sp. sc-a
F: maratus suae
G: suillus
H: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
I: sueus
J: anisakis sp. sm-2005
K: None of the above. | [K; D] |
<Instruct>: Given the context 'Other protein kinases, such as PEPCK, and phosphatases, were shown herein to be transcribed at high levels in the L3 stage compared with other developmental stages of A. suum (see Table 2), which is in accordance to findings reported recently for Anisakis simplex [65].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; anisakis simplex]
<Options>: A: anisakis sp. hc-2005
B: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
C: maratus suae
D: anisakis sp. sc-a
E: anisakis sp. ca-2012
F: anisakis sp. sm-2005
G: suillus
H: paracoccus suum
I: sueus
J: None of the above. | [J; J] |
<Instruct>: Given the context 'Other protein kinases, such as PEPCK, and phosphatases, were shown herein to be transcribed at high levels in the L3 stage compared with other developmental stages of A. suum (see Table 2), which is in accordance to findings reported recently for Anisakis simplex [65].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; anisakis simplex]
<Options>: A: suillus
B: anisakis sp. sm-2005
C: pigs (aka suidae) (aka suidae)
D: anisakis simplex sensu lato
E: anisakis
F: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
G: suarius
H: anisakis sp. ae3
I: actinomyces suis (aka actinobaculum suis)
J: herring worm (aka anisakis simplex)
K: None of the above. | [K; J] |
<Instruct>: Given the context 'In conclusion, this study has given some interesting insights into early molecular processes in the L3 of A. suum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus indicus (suillus indica) (aka suillus indicus)
B: sueus
C: suillia
D: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
E: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
F: None of the above. | [F] |
<Instruct>: Given the context 'Approximately 60% of the transcripts enriched in the L3 stage of A. suum have homologues/orthologues in C. elegans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans]
<Options>: A: aerococcus suis
B: zodarion elegans (enyo elegans) (aka zodarion elegans)
C: suillia
D: rhabditis elegans (aka caenorhabditis elegans)
E: myzomyia elegans (aka anopheles elegans)
F: caenorhabditis
G: sueus
H: suillus indica (aka suillus indicus)
I: suina (suiformes) (aka suina)
J: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
K: None of the above. | [K; D] |
<Instruct>: Given the context 'Approximately 60% of the transcripts enriched in the L3 stage of A. suum have homologues/orthologues in C. elegans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans]
<Options>: A: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
B: bactris elegans
C: suillus indica (aka suillus indicus)
D: uca elegans (aka tubuca elegans)
E: caenorhabditis sp.
F: caromyxa elegans (aka mutinus elegans)
G: actinomyces suis (aka actinobaculum suis)
H: suina (suiformes) (aka suina)
I: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
J: sueus
K: None of the above. | [K; I] |
<Instruct>: Given the context 'The bioinformatic analyses of selected molecules suggest that a complex genetic network regulates or controls larval growth and development in A. suum L3s, and some of these might be involved in or regulate the switch from the free-living to the parasitic stage.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suidae (pigs (aka suidae))
B: aerococcus suis
C: suillus
D: suillia
E: suarius
F: None of the above. | [F] |
<Instruct>: Given the context 'Some caution is warranted in drawing conclusions regarding molecular mechanisms regulating the transition to parasitism in parasitic nematodes from information on C. elegans, as latter is a free-living nematode.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
C: rhabditis elegans (aka caenorhabditis elegans)
D: myzomyia elegans (aka anopheles elegans)
E: caromyxa elegans (aka mutinus elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'The imminent genome sequence of A. suum (http://www.sanger.ac.uk/Projects/Helminths/) should all assist in this endeavour.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: actinomyces suis (aka actinobaculum suis)
B: aerococcus suis
C: maratus suae
D: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
E: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
F: None of the above. | [F] |
<Instruct>: Given the context 'Initial manifestations experienced by the patient, possibly due to obstruction, and including mild abdominal pain and nausea, occurred on the third day postoperatively.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: this
B: suborder
C: data
D: homo sapiens (human) (aka homo sapiens)
E: goes
F: None of the above. | [D] |
<Instruct>: Given the context 'Case presentation
An 80-year-old man was found to have early gastric cancer during his yearly check-up by gastrointestinal endoscopy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [man]
<Options>: A: human (aka homo sapiens)
B: this
C: birds (aka aves)
D: mouse (aka mus musculus)
E: genus
F: None of the above. | [A] |
<Instruct>: Given the context 'Postoperatively, the patient complained of an acidic feeling in his stomach; however, there were no remarkable abnormalities on biochemical examination of serum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: isolate
B: aides
C: mouse (aka mus musculus)
D: goes
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'However, on day 4, the patient started to complain of upper abdominal pain and developed a high grade fever (38°C).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: probles
B: isolate
C: circe
D: mouse (aka mus musculus)
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'The patient remained in the intensive care unit for 5 days after re-operation, and was then transferred to the general ward.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: kingdom
B: species
C: this
D: human (aka homo sapiens)
E: aides
F: None of the above. | [D] |
<Instruct>: Given the context 'Indeed, Kolata demonstrated that the wounds made by the non-bladed trocar were narrower than those created by cutting tip trocars in a pig experimental model [4].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pig]
<Options>: A: suidae (pigs (aka suidae))
B: chickens (aka gallus gallus)
C: bovidae
D: gallus
E: pig (aka sus scrofa) (aka sus scrofa)
F: None of the above. | [E] |
<Instruct>: Given the context 'However, it is sometimes difficult to completely close the defect, including the peritoneum, especially in obese patients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: genus
B: theraps
C: goes
D: mus <genus> (mice (aka mus <genus>))
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Moreover, special attention should be paid in patients with risk factors for port site hernia such as obesity, aggressive manipulation through the port sites, and prolonged surgery.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: probles
B: species
C: theraps
D: this
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Careful management of the postoperative course is recommended especially for patients with risk factors such as obesity and extensive manipulation of the trocar during prolonged surgical duration.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: goes
B: circe
C: homo sapiens (human) (aka homo sapiens)
D: species
E: suborder
F: None of the above. | [C] |
<Instruct>: Given the context 'Consent
Written informed consent was obtained from the patient for publication of this case report and any accompanying images.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: cancer
B: other (aka unidentified)
C: homo sapiens (human) (aka homo sapiens)
D: probles
E: subsection
F: None of the above. | [C] |
<Instruct>: Given the context 'Consent
Written informed consent was obtained from the patient for publication of this case report and any accompanying images.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: cancer
B: probles
C: other (aka unidentified)
D: subsection
E: None of the above. | [E] |
<Instruct>: Given the context 'Previously, we reported that some SSRIs possess high to moderate affinities for sigma-1 receptors in the rat brain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: house rat (aka rattus rattus)
B: rattus (rats (aka rattus))
C: rattus norvegicus albus
D: rats (aka rattus sp.) (aka rattus sp.)
E: norway rat (aka rattus norvegicus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Recently, we reported that fluvoxamine, but not paroxetine, significantly ameliorated cognitive deficits in mice after repeated phencyclidine administration, and that the effects of fluvoxamine were antagonized by co-administration of the selective sigma-1 receptor antagonist NE-100', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
B: mice (aka mus <genus>) (aka mus <genus>)
C: mus (aka mus <subgenus>) (aka mus <subgenus>)
D: western european house mouse (aka mus musculus domesticus)
E: mouse (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Cell culture
PC12 sells (RIKEN Cell Bank, Tsukuba, Japan) were cultured at 37°C, 5% CO2 with Dulbecco's modified Eagle's medium (DMEM) supplemented with 5% heat-inactivated fetal bovine serum (FBS), 10% heat-inactivated horse serum, and 1% penicillin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine; horse]
<Options>: A: boveria
B: equus sp.
C: bos taurus x bos indicus (aka bos indicus x bos taurus)
D: ox (aka bos taurus) (aka bos taurus)
E: horses (aka equidae)
F: bos bubalis bubalis (aka bubalus bubalis bubalis)
G: donkey (aka equus asinus)
H: equus caballus (equus przewalskii forma caballus) (aka equus caballus)
I: equus subg. asinus (aka equus)
J: bos sp.
K: None of the above. | [D; H] |
<Instruct>: Given the context 'Cell culture
PC12 sells (RIKEN Cell Bank, Tsukuba, Japan) were cultured at 37°C, 5% CO2 with Dulbecco's modified Eagle's medium (DMEM) supplemented with 5% heat-inactivated fetal bovine serum (FBS), 10% heat-inactivated horse serum, and 1% penicillin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine; horse]
<Options>: A: bos taurus x bos indicus (aka bos indicus x bos taurus)
B: bos bubalis (aka bubalus bubalis)
C: bos bubalis bubalis (aka bubalus bubalis bubalis)
D: eques
E: boveria
F: horse (aka equus caballus)
G: equetus
H: bovine (aka bos taurus)
I: equus sp.
J: equus przewalskii (equus caballus przewalskii) (aka equus przewalskii)
K: None of the above. | [H; F] |
<Instruct>: Given the context 'Immunocytochemistry
Cells were fixed for 30 min at room temperature with 4% paraformaldehyde then permeabilized with 0.2% Triton and blocked with 1.5% normal goat serum, 0.1% bovine serum albumin (BSA) in 0.1 M phosphate-buffer saline for 1 h to reduce nonspecific binding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [goat; bovine]
<Options>: A: domestic goat (aka capra hircus)
B: wild goat (aka capra aegagrus)
C: capreolus
D: bos (cattle) (aka bos)
E: bovine (aka bos taurus)
F: donkey (aka equus asinus)
G: bovidae
H: bos taurus x bos indicus (aka bos indicus x bos taurus)
I: bos bubalis (aka bubalus bubalis)
J: boveria
K: None of the above. | [A; E] |
<Instruct>: Given the context 'Immunocytochemistry
Cells were fixed for 30 min at room temperature with 4% paraformaldehyde then permeabilized with 0.2% Triton and blocked with 1.5% normal goat serum, 0.1% bovine serum albumin (BSA) in 0.1 M phosphate-buffer saline for 1 h to reduce nonspecific binding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [goat; bovine]
<Options>: A: capra hircus (capra aegagrus hircus) (aka capra hircus)
B: capraita
C: capra aegagrus cretica (aka capra hircus cretica)
D: bos bubalis bubalis (aka bubalus bubalis bubalis)
E: donkey (aka equus asinus)
F: domestic cow (aka bos taurus)
G: bovinae
H: cattle (aka bos)
I: capreolus
J: boveria
K: None of the above. | [A; F] |
<Instruct>: Given the context 'Immunocytochemistry
Cells were fixed for 30 min at room temperature with 4% paraformaldehyde then permeabilized with 0.2% Triton and blocked with 1.5% normal goat serum, 0.1% bovine serum albumin (BSA) in 0.1 M phosphate-buffer saline for 1 h to reduce nonspecific binding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [goat; bovine]
<Options>: A: cattle (aka bos)
B: bos bubalis bubalis (aka bubalus bubalis bubalis)
C: bovinae
D: boveria
E: capraita
F: capra aegagrus cretica (aka capra hircus cretica)
G: capreolus
H: capra hircus (capra aegagrus hircus) (aka capra hircus)
I: donkey (aka equus asinus)
J: None of the above. | [H; J] |
<Instruct>: Given the context 'Our recent positron emission tomography (PET) study demonstrated that, after a single oral administration, fluvoxamine bound to sigma-1 receptors in the living human brain [45].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: birds (aka aves)
B: kingdom
C: primate (aka primates)
D: human (aka homo sapiens)
E: suborder
F: None of the above. | [D] |
<Instruct>: Given the context 'This finding suggests that sigma-1 receptors are involved in the mechanism of action of fluvoxamine in the human brain [45].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: kingdom
B: human (aka homo sapiens)
C: species
D: biota (aka cellular organisms)
E: macrobiotus sapiens
F: None of the above. | [B] |
<Instruct>: Given the context 'Alexithymia and anxiety in female chronic pain patients
Abstract
Objectives
Alexithymia is highly prevalent among chronic pain patients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: human (aka homo sapiens)
B: kingdom
C: other (aka unidentified)
D: circe
E: theraps
F: None of the above. | [A] |
<Instruct>: Given the context 'The purpose of this study was to investigate the prevalence of alexithymia and to determine anxiety levels among DSM-IV somatoform pain disorder (chronic pain) female patients and to examine the relationship between alexithymia and the self-reporting of pain.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: circe
B: human (aka homo sapiens)
C: mus <genus> (mice (aka mus <genus>))
D: aides
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Thirty seven healthy females (mean age: 34,46 ± 7,43 years), who matched for sociodemographic features with the patient group, consisted the control group.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: humans (aka homo)
B: kingdom
C: data
D: human (aka homo sapiens)
E: isolate
F: None of the above. | [D] |
<Instruct>: Given the context 'A sociodemographic data form, 26-item Toronto Alexithymia Scale (TAS-26), Spielberger Trait Anxiety Inventory (STAI) were administered to each subject and information was obtained on several aspects of the patients' pain, including intensity (measured by VAS), and duration.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: circe
B: probles
C: subsection
D: humans (aka homo)
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Results
Chronic pain patients were found significantly more alexithymic than controls.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: aides
B: human (aka homo sapiens)
C: theraps
D: mus <genus> (mice (aka mus <genus>))
E: other (aka unidentified)
F: None of the above. | [B] |
<Instruct>: Given the context 'Neither positive correlation nor significant difference was found between alexithymia and trait anxiety in pain patients.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: species
B: homo sapiens (human) (aka homo sapiens)
C: kingdom
D: circe
E: aides
F: None of the above. | [B] |
<Instruct>: Given the context 'Several studies have found a high prevalence of alexithymia in pain patients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: probles
B: goes
C: human (aka homo sapiens)
D: genus
E: other (aka unidentified)
F: None of the above. | [C] |
<Instruct>: Given the context 'Chronic pain patients frequently exhibit many of the core features of alexithymia, such as problems in identifying and describing subjective feelings, impoverished imaginative abilities, and excessive preoccupation with physical symptoms and external events.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: human (aka homo sapiens)
B: probles
C: kingdom
D: aides
E: homo (humans) (aka homo)
F: None of the above. | [A] |
<Instruct>: Given the context 'Chronic pain patients frequently exhibit many of the core features of alexithymia, such as problems in identifying and describing subjective feelings, impoverished imaginative abilities, and excessive preoccupation with physical symptoms and external events.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: probles
B: aides
C: homo (humans) (aka homo)
D: kingdom
E: None of the above. | [E] |
<Instruct>: Given the context 'Although several studies have found a high prevalence of alexithymia in pain patients, the way alexithymia may possibly influence pain experience is still unclear [12,13].
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: mus <genus> (mice (aka mus <genus>))
B: probles
C: human (aka homo sapiens)
D: species
E: this
F: None of the above. | [C] |
<Instruct>: Given the context 'In chronic pain disorder, patients complain of chronic pain, for which no physical etiology could be found or the underlying disorder is insufficient in explaining the symptoms.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: cancer
B: human (aka homo sapiens)
C: theraps
D: mus <genus> (mice (aka mus <genus>))
E: mouse (aka mus musculus)
F: None of the above. | [B] |
<Instruct>: Given the context 'The alexithymic person's difficulty in identifying and describing feelings may increase symptom reporting by several mechanisms.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [person]
<Options>: A: species group
B: genus
C: psyche
D: kingdom
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Accordingly, previous studies have found evidence of an association between alexithymia and the development of functional somatic symptoms, as seen in patients with somatoform disorders.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: this
B: humans (aka homo)
C: homo sapiens (human) (aka homo sapiens)
D: suborder
E: theraps
F: None of the above. | [C] |
<Instruct>: Given the context 'The purpose of the present study was to investigate the prevalence of alexithymia among DSM-IV somatoform pain disorder (chronic pain) female patients and to examine the relationship between alexithymia and the self-reporting of pain in this group of patients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: probles
B: theraps
C: mus <genus> (mice (aka mus <genus>))
D: species
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Besides, the study searched for the anxiety levels of chronic pain patients with or without alexithymia.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: circe
B: theraps
C: mouse (aka mus musculus)
D: kingdom
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Patients with concomitant psychiatric disorders, such as major depression, anxiety disorders and somatoform disorders other than pain disorder were excluded.
Patients either directly applied to the psychiatry clinic themselves or were referred for psychiatric assessment from another outpatient clinic, mainly physical medicine and rehabilitation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: probles
C: subsection
D: mus musculus (house mouse) (aka mus musculus)
E: goes
F: None of the above. | [A] |
<Instruct>: Given the context 'The mean age of the patients and the healthy controls was 34,63 ± 10,62 (range: 16–62) and 34,46 ± 7,43 (range: 22–57) years and the educational level was 6,13 ± 3,03 (range: 5–11) and', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: genus
C: mouse (aka mus musculus)
D: suborder
E: cancer
F: None of the above. | [A] |
<Instruct>: Given the context 'All participants were applied Structured Clinical Interview for DSM-IV (SCID-I)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [participants]
<Options>: A: birds (aka aves)
B: kingdom
C: human (aka homo sapiens)
D: primate (aka primates)
E: genus
F: None of the above. | [C] |
<Instruct>: Given the context 'Regarding the pain assessment, information was first obtained on several aspects of the patients' pain, such as intensity, and duration.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: probles
B: homo sapiens (human) (aka homo sapiens)
C: cancer
D: subsection
E: species
F: None of the above. | [B] |
<Instruct>: Given the context 'Regarding the pain assessment, information was first obtained on several aspects of the patients' pain, such as intensity, and duration.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: probles
B: cancer
C: subsection
D: species
E: None of the above. | [E] |
<Instruct>: Given the context 'VAS is scored by measuring the distance from the end of the scale indicating absence of pain (or no distress or no pain relief) to the place marked by the patient', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: circe
B: goes
C: homo sapiens (human) (aka homo sapiens)
D: species
E: theraps
F: None of the above. | [C] |
<Instruct>: Given the context 'Results
In the chronic pain group, 56.7% of patients (n = 17) had a score greater than 11 on the TAS-26, and were considered alexithymic.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: this
B: theraps
C: genus
D: homo sapiens (human) (aka homo sapiens)
E: aides
F: None of the above. | [D] |
<Instruct>: Given the context 'In the control group, 24,3% of patients (n = 9) were alexithymic according to TAS-26.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: subsection
B: mus <genus> (mice (aka mus <genus>))
C: homo sapiens (human) (aka homo sapiens)
D: species
E: this
F: None of the above. | [C] |
<Instruct>: Given the context 'The duration and severity of pain, TAS-26 scores, and STAI scores of the female pain patients are shown in Table 2.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: genus
B: mus <genus> (mice (aka mus <genus>))
C: homo sapiens (human) (aka homo sapiens)
D: subsection
E: probles
F: None of the above. | [C] |
<Instruct>: Given the context 'First, chronic pain patients were found significantly more alexithymic than controls (56,7% to 24,3%).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: this
B: theraps
C: mus musculus (house mouse) (aka mus musculus)
D: homo sapiens (human) (aka homo sapiens)
E: genus
F: None of the above. | [D] |
<Instruct>: Given the context 'Third, neither positive correlation nor significant difference was found between alexithymia and trait anxiety in pain patients.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: goes
B: genus
C: mus musculus (house mouse) (aka mus musculus)
D: this
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Discussion
The results of the present study suggest that patients with chronic pain disorder are more alexithymic than individuals with no pain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: circe
B: aides
C: human (aka homo sapiens)
D: this
E: other (aka unidentified)
F: None of the above. | [C] |
<Instruct>: Given the context 'There were no significant differences between alexithymic and nonalexitymic patients on self reports of current pain severity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: cancer
B: goes
C: humans (aka homo)
D: human (aka homo sapiens)
E: other (aka unidentified)
F: None of the above. | [D] |
<Instruct>: Given the context '[1994] in which it was further pointed out that alexithymic patients were found to use significantly more verbal descriptors of pain compared to nonalexithymic patients', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: human (aka homo sapiens)
B: genus
C: theraps
D: mouse (aka mus musculus)
E: cancer
F: None of the above. | [A] |
<Instruct>: Given the context 'Pain is a subjective experience and each patient may communicate in a different way, verbally or nonverbally [29].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: subsection
B: this
C: proxys
D: aides
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Pain is a subjective experience and each patient may communicate in a different way, verbally or nonverbally [29].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: aides
B: this
C: subsection
D: proxys
E: None of the above. | [E] |
<Instruct>: Given the context 'Patients in this sample were sufferers of chronic pain, who had already chosen an approved way of expressing their distress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: suborder
B: probles
C: cancer
D: human (aka homo sapiens)
E: kingdom
F: None of the above. | [D] |
<Instruct>: Given the context 'The duration of the patients' pain could approximately be determined, yet the preexisting level of alexithymia was not known.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: mus musculus (house mouse) (aka mus musculus)
B: homo sapiens (human) (aka homo sapiens)
C: cancer
D: goes
E: aides
F: None of the above. | [B] |
<Instruct>: Given the context 'In the usual absence of internal stimuli, alexithymic person may be expected to maintain an external focus of attention, such as pain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [person]
<Options>: A: family
B: primate (aka primates)
C: this
D: human (aka homo sapiens)
E: homo (humans) (aka homo)
F: None of the above. | [D] |
<Instruct>: Given the context 'Symptom chronicity may force the alexithymic person to attent to and amplify this somatic sensation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [person]
<Options>: A: species
B: human (aka homo sapiens)
C: other (aka unidentified)
D: probles
E: this
F: None of the above. | [B] |
<Instruct>: Given the context 'Therefore, alexithymic patients might be expected to differ from nonalexithymic ones in their anxiety levels.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: species
B: other (aka unidentified)
C: subsection
D: human (aka homo sapiens)
E: suborder
F: None of the above. | [D] |
<Instruct>: Given the context 'Yet, in our pain group alexithymic patients showed no significant difference from the nonalexithymics on trait anxiety.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: theraps
B: homo sapiens (human) (aka homo sapiens)
C: this
D: genus
E: humans (aka homo)
F: None of the above. | [B] |
<Instruct>: Given the context 'The reasons may be lying in the specific characteristics of this patient group itself.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: proxys
B: cancer
C: homo sapiens (human) (aka homo sapiens)
D: genus
E: humans (aka homo)
F: None of the above. | [C] |
<Instruct>: Given the context 'The study included patients suffering from chronic symptoms; with an average of 7,44 ± 6,82 years of pain in the alexithymic and 3,31 ± 2,79 years in the nonalexithymic groups.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: genus
B: suborder
C: homo (humans) (aka homo)
D: circe
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'It is not known whether it should be addressed in the treatment of pain patients, but a high level of alexithymia may effect the nature of assessment.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: genus
B: mouse (aka mus musculus)
C: other (aka unidentified)
D: species
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus cereus group; b. cereus; b. anthracis; b. thuringiensis]
<Options>: A: bacillus mojavensis subgroup
B: bacillus cereus group
C: 'mycobacterium anthracenicum' (aka mycobacterium anthracenicum)
D: bacillus thuringiensis berliner 1915 (approved lists 1980) (aka bacillus thuringiensis)
E: bacillus thuringiensis serovar nigeriensis (bacillus thuringiensis subsp. nigeriensis) (aka bacillus thuringiensis serovar nigeriensis)
F: bacillus cereus f (bacillus cereus strain f) (aka bacillus cereus f)
G: bacillus thuringiensis serovar brasiliensis (aka bacillus thuringiensis serovar brasilensis)
H: cereus (aka cereus <sea anemones>)
I: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
J: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
K: bacillus cereus biovar anthracis
L: bacillus cereus group sp.
M: bacillus thuringiensis thuringiensis (aka bacillus thuringiensis serovar thuringiensis)
N: bacillus thuringiensis gv. thuringiensis
O: bacillus cereus biovar anthracis ci (aka bacillus cereus biovar anthracis str. ci)
P: bacillus subtilis group
Q: bacillus cereus var. thuringiensis (aka bacillus thuringiensis)
R: bacillus anthracis str. ames ancestor (aka bacillus anthracis str. 'ames ancestor')
S: None of the above. | [B; I; J; D] |
<Instruct>: Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus cereus group; b. cereus; b. anthracis; b. thuringiensis]
<Options>: A: bacillus thuringiensis kurstaki (aka bacillus thuringiensis serovar kurstaki)
B: bacillus wiedmannii bv. thuringiensis (bacillus wiedmannii biovar thuringiensis) (aka bacillus wiedmannii bv. thuringiensis)
C: bacillus cereus var. thuringiensis (aka bacillus thuringiensis)
D: bacillus cereus biovar anthracis
E: bacillus anthracis bf1 (aka bacillus anthracis str. bf1)
F: bacillus cereus str. w (aka bacillus cereus w)
G: bacillus thuringiensis gv. thuringiensis
H: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
I: bacillus cereus var. anthracis (aka bacillus anthracis)
J: bacillus cereus strain atcc 10987 (aka bacillus cereus atcc 10987)
K: bacillus anthracis (strain sterne) (aka bacillus anthracis str. sterne)
L: bacillus cereus group
M: bacillus anthracis ames (aka bacillus anthracis str. ames)
N: anthracus
O: bacillus cereus group sp.
P: cereus (aka cereus <sea anemones>)
Q: bacillus subtilis group sp.
R: bacillus cereus f (bacillus cereus strain f) (aka bacillus cereus f)
S: bacillus subtilis group
T: bacillus thuringiensis gv. cytolyticus
U: None of the above. | [L; H; I; C] |
<Instruct>: Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus cereus group; b. cereus; b. anthracis; b. thuringiensis]
<Options>: A: bacillus anthracis ames "ancestor" (aka bacillus anthracis str. 'ames ancestor')
B: bacillus anthracis sterne (aka bacillus anthracis str. sterne)
C: bacillus cereus group sp.
D: bacillus/lactobacillus/streptococcus group (aka bacilli)
E: bacillus thuringiensis serovar kurstaki (bacillus thuringiensis (subsp. kurstaki)) (aka bacillus thuringiensis serovar kurstaki)
F: bacillus subtilis group
G: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
H: bacillus cereus strain atcc 10987 (aka bacillus cereus atcc 10987)
I: bacillus thuringiensis subsp. thuringiensis (aka bacillus thuringiensis serovar thuringiensis)
J: bacillus cereus biovar anthracis
K: bacillus sp. (in: firmicutes)
L: bacillus cereus str. f (aka bacillus cereus f)
M: anthracus
N: bacillus cereus var. thuringiensis (aka bacillus thuringiensis)
O: lycoriella thuringiensis
P: anthrax bacterium (aka bacillus anthracis)
Q: bacillus cereus group
R: bacillus thuringiensis gv. cytolyticus
S: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
T: None of the above. | [Q; S; P; N] |
<Instruct>: Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus cereus group; b. cereus; b. anthracis; b. thuringiensis]
<Options>: A: anthrax
B: bacillus cereus biovar anthracis
C: bacillus mojavensis subgroup
D: bacillus thuringiensis berliner 1915 (approved lists 1980) (aka bacillus thuringiensis)
E: anthrax bacterium (aka bacillus anthracis)
F: chromobacterium group
G: bacillus anthracis ames "ancestor" (aka bacillus anthracis str. 'ames ancestor')
H: bacillus cereus group
I: bacillus anthracis (strain sterne) (aka bacillus anthracis str. sterne)
J: bacillus sp. (in: firmicutes)
K: vibrio subtilis (aka bacillus subtilis)
L: bacillus thuringiensis gv. cytolyticus
M: bacillus amyloliquefaciens group (operational group b. amyloliquefaciens) (aka bacillus amyloliquefaciens group)
N: lycoriella thuringiensis
O: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
P: bacillus toyonensis biovar thuringiensis
Q: bacillus thuringiensis serovar thailandensis
R: bacillus cereus (strain atcc 14579 / dsm 31) (aka bacillus cereus atcc 14579)
S: None of the above. | [H; O; E; D] |
<Instruct>: Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus cereus group; b. anthracis; anthrax; b. thuringiensis]
<Options>: A: bacillus sp. (in: firmicutes)
B: bacillus thuringiensis gv. cytolyticus
C: bacillus anthracis strain 'ames ancestor' (aka bacillus anthracis str. 'ames ancestor')
D: bacillus thuringiensis berliner 1915 (approved lists 1980) (aka bacillus thuringiensis)
E: anthribola
F: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
G: limnophora anthrax (aka spilogona anthrax)
H: bacillus amyloliquefaciens group (operational group b. amyloliquefaciens) (aka bacillus amyloliquefaciens group)
I: bacillus cereus group sp.
J: bacillus thuringiensis serovar brasiliensis (aka bacillus thuringiensis serovar brasilensis)
K: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
L: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
M: bacillus cereus group
N: anthreptes
O: bacillus thuringiensis kurstaki (aka bacillus thuringiensis serovar kurstaki)
P: bacillus anthracis bf1 (aka bacillus anthracis str. bf1)
Q: bacillus thuringiensis serovar thailandensis
R: bacillus cereus biovar anthracis ci (aka bacillus cereus biovar anthracis str. ci)
S: bacillus anthracis (strain sterne) (aka bacillus anthracis str. sterne)
T: None of the above. | [M; K; K; D] |
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