instruction stringlengths 225 2.35k | input stringlengths 89 1.5k | response stringclasses 698 values |
|---|---|---|
<Instruct>: Given the context 'Only individuals with height SDS between −2 and +2 SDS were included in the study (mean −0·016; 32 women and 28 men between −2·000 and −1·010; 99 women and 80 men between −1·000 and +0·910; 33 women and 35 men between +1·010 and +1·980) and sample size was adjusted for normal sex and height SDS distribution.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [women; men]
<Options>: A: latina
B: menaethius
C: meneristes
D: menecleonus
E: menenotus
F: menosira
G: human (aka homo sapiens)
H: chicken (aka gallus gallus)
I: probles
J: suborder
K: None of the above. | [G; G] |
<Instruct>: Given the context 'Only individuals with height SDS between −2 and +2 SDS were included in the study (mean −0·016; 32 women and 28 men between −2·000 and −1·010; 99 women and 80 men between −1·000 and +0·910; 33 women and 35 men between +1·010 and +1·980) and sample size was adjusted for normal sex and height SDS distribution.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [women; men]
<Options>: A: menetus
B: menigrates
C: menkeleon
D: species
E: this
F: menenotus
G: eutherian mammals (aka eutheria)
H: menetes
I: human (aka homo sapiens)
J: menophra
K: None of the above. | [I; I] |
<Instruct>: Given the context 'Several sequence changes have been reported in patients with familial or idiopathic short stature,11,26,27 whereas P8, P19, P20 and P25 (at positions 5165, 5681, 5686 and 6358, respectively, in the Genebank accession GI 183148) located in the promoter, intron 2 and intron 4 regions, respectively, had not been previously described.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: human (aka homo sapiens)
B: mus musculus (house mouse) (aka mus musculus)
C: genus
D: cancer
E: theraps
F: None of the above. | [A] |
<Instruct>: Given the context 'Discussion
Genetic variations within human GH1 gene have been described by several authors.9–12,21', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: macrobiotus sapiens
B: suborder
C: placental mammals (aka eutheria)
D: birds (aka aves)
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Discussion
Genetic variations within human GH1 gene have been described by several authors.9–12,21', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: suborder
B: birds (aka aves)
C: macrobiotus sapiens
D: placental mammals (aka eutheria)
E: None of the above. | [E] |
<Instruct>: Given the context 'The populations described to date comprised small numbers of normal-stature individuals,9 male adults with narrow height range12 or growth-retarded patients with/without GHD before achievement of adult height.9,11,12 Our study was designed to characterize the GH1 gene sequence variation in individuals within the whole range of normal adult height (between −2 and +2 SDS) according to the standards for our population.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: cancer
B: this
C: homo (humans) (aka homo)
D: mouse (aka mus musculus)
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Five single nucleotide changes are located in exon 5; of these five, three predict an amino acid change, and one of the three (Ile179Met) has been described by Lewis et al.27 in a paediatric patient with familial short stature and the other two, as yet undescribed, are contiguous in a single individual (Pro133Hys and Arg134Leu).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: human (aka homo sapiens)
B: subsection
C: genus
D: cancer
E: other (aka unidentified)
F: None of the above. | [A] |
<Instruct>: Given the context 'Analysis of SNP association with adult height was subsequently performed to establish a body of knowledge useful for comparing patient genotypes and phenotypes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: species
B: homo sapiens (human) (aka homo sapiens)
C: probles
D: data
E: this
F: None of the above. | [B] |
<Instruct>: Given the context 'A recent study from Giordano et al.34 has shown a twofold reduced luciferase activity for the G nucleotide bearing promoter haplotype in transfected rat pituitary cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus (rats (aka rattus))
B: rattus rattoides (aka rattus pyctoris)
C: brown rat (aka rattus norvegicus)
D: mus rattus (aka rattus rattus)
E: rattus sp. (rats (aka rattus sp.))
F: None of the above. | [C] |
<Instruct>: Given the context 'The high density of SNPs and their proximity hamper other genotyping strategies for rapid determination of the complete GH1 SNP map in large control and patient populations.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: theraps
B: data
C: probles
D: human (aka homo sapiens)
E: subsection
F: None of the above. | [D] |
<Instruct>: Given the context 'Systematic GH1 gene analysis in patients with growth delay and suspected GH deficiency/insufficiency will clarify whether different SNP frequencies and/or the presence of different sequence changes may be associated with phenotypes in them.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: mus musculus (house mouse) (aka mus musculus)
B: probles
C: suborder
D: homo sapiens (human) (aka homo sapiens)
E: humans (aka homo)
F: None of the above. | [D] |
<Instruct>: Given the context 'Down-regulation of the M6P/IGF-II receptor increases cell proliferation and reduces apoptosis in neonatal rat cardiac myocytes
Abstract
Background
The mannose 6-phosphate/insulin-like growth factor-II receptor (M6P/IGF2R) is a multi-functional protein that has been implicated in regulation of cell growth and apoptosis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus sp. (rats (aka rattus sp.))
B: rattus norvegicus albus
C: rattus rattus (rattus wroughtoni) (aka rattus rattus)
D: rattus norvegicus (rats (aka rattus norvegicus))
E: rattus pyctoris (rattus rattoides) (aka rattus pyctoris)
F: None of the above. | [D] |
<Instruct>: Given the context 'Results
We down-regulated the expression of M6P/IGF2R in neonatal rat cardiac myocytes and examined the effect on cell proliferation and apoptosis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: roof rat (aka rattus rattus)
B: rattus sp. (rats (aka rattus sp.))
C: rattus pyctoris (rattus rattoides) (aka rattus pyctoris)
D: norway rat (aka rattus norvegicus)
E: rats (aka rattus) (aka rattus)
F: None of the above. | [D] |
<Instruct>: Given the context 'However, alterations in the control of apoptosis have also been shown to contribute to human diseases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: mammals (aka mammalia)
B: homo sapiens (human) (aka homo sapiens)
C: animals (aka metazoa)
D: suborder
E: genus
F: None of the above. | [B] |
<Instruct>: Given the context 'Cardiac myocytes express relatively high levels of M6P/IGF2R and transgenic mice containing a homologous deletion of the M6P/IGF2R gene manifest ventricular hyperplasia due to an increase in cell number [9,10], suggesting that the M6P/IGF2R normally acts to suppress cardiac myocyte cell growth.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus <subgenus> (mus (aka mus <subgenus>))
B: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
C: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
D: mice (aka mus sp.) (aka mus sp.)
E: mouse (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Cardiac myocytes express relatively high levels of M6P/IGF2R and transgenic mice containing a homologous deletion of the M6P/IGF2R gene manifest ventricular hyperplasia due to an increase in cell number [9,10], suggesting that the M6P/IGF2R normally acts to suppress cardiac myocyte cell growth.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus <subgenus> (mus (aka mus <subgenus>))
B: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: mice (aka mus sp.) (aka mus sp.)
E: None of the above. | [E] |
<Instruct>: Given the context 'Adenoviral delivery of ribozymes increases the proliferation of cardiac myocytes
We examined the effects of the ribozyme on the growth of cultured neonatal rat cardiac myocytes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus (rats (aka rattus norvegicus))
B: rats (aka rattus) (aka rattus)
C: rattus pyctoris (rattus rattoides) (aka rattus pyctoris)
D: mus rattus (aka rattus rattus)
E: rattus norvegicus albus
F: None of the above. | [A] |
<Instruct>: Given the context 'Supporting evidence for the involvement of IGF-II in the proliferative effect resulting from loss of M6P/IGF2R function comes from studies of M6P/IGF2R knock-out mice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mouse (aka mus <genus>)
B: mus cricetus (aka cricetus cricetus)
C: mus <subgenus> (mus (aka mus <subgenus>))
D: eastern european house mouse (aka mus musculus musculus)
E: mouse (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'M6P/IGF2R-null mice display global hyperplasia that coincides with elevated levels of IGF-II.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus domesticus (aka mus musculus domesticus)
B: peromyscus
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: mus <subgenus> (mus (aka mus <subgenus>))
E: house mouse (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'The nucleotide numbers of the rat M6P/IGF2R sequence targeted by the hammerhead ribozyme is 1147–1160 after coding site (exon 9).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus albus
B: rattus (rats (aka rattus))
C: mus norvegicus (aka rattus norvegicus)
D: rattus pyctoris (rattus rattoides) (aka rattus pyctoris)
E: rattus sp. (rats (aka rattus sp.))
F: None of the above. | [C] |
<Instruct>: Given the context 'Cell cultures and infection with Ad-GFP/Rz-IGF2R and Ad-GFP
Cardiac myocytes were isolated from 1-day-old newborn rats using the Neonatal Cardiomyocyte Isolation System (Worthington).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rats]
<Options>: A: rattus norvegicus albus
B: mus rattus (aka rattus rattus)
C: rats (aka rattus sp.) (aka rattus sp.)
D: rattus (rats (aka rattus))
E: norway rat (aka rattus norvegicus)
F: None of the above. | [E] |
<Instruct>: Given the context 'The isolated cells were plated in 6-well plates and cultured in F-10 medium containing 5% (vol/vol) FBS and 10% (vol/vol) horse serum at 37°C in a tissue culture incubator with 5% CO2 and 98% relative humidity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [horse]
<Options>: A: equus sp.
B: eques
C: horses (aka equidae)
D: equus caballus (equus przewalskii forma caballus) (aka equus caballus)
E: equetus
F: None of the above. | [D] |
<Instruct>: Given the context 'The plasmid containing the rat M6P/IGF2R gene was linearized and used as a transcription template.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus albus
B: rattus rattoides (aka rattus pyctoris)
C: rats (aka rattus sp.) (aka rattus sp.)
D: house rat (aka rattus rattus)
E: rats (aka rattus norvegicus) (aka rattus norvegicus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Antisense RNA probes were transcribed in vitro using [33P]-UTP, T7 polymerase (Riboprobea System T7 kit, Promega), hybridized with the total RNA extracted from the rat cardiomyocytes, and digested with ribonuclease to remove non-hybridized RNA and probe.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: roof rat (aka rattus rattus)
B: rat (aka rattus norvegicus) (aka rattus norvegicus)
C: rats (aka rattus sp.) (aka rattus sp.)
D: rattus norvegicus albus
E: rattus rattoides (aka rattus pyctoris)
F: None of the above. | [B] |
<Instruct>: Given the context 'Briefly, cells were permeabilized with 0.25% saponin in 50 mM Hepes (pH 7.0), 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, and 10 mM mannose-6-phosphate (M6P) for 30 minutes on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: macrobiotus sapiens
B: biota (aka cellular organisms)
C: homo sapiens (human) (aka homo sapiens)
D: primate (aka primates)
E: genus
F: None of the above. | [C] |
<Instruct>: Given the context 'They were incubated with 20,000 units/ml β-glucuronidase from bovine liver (Sigma) in 50 mM Hepes (pH 7.5) containing 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, 0.5% saponin with or without 10 mM M6P overnight on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine; human]
<Options>: A: biota (aka cellular organisms)
B: homo sapiens (human) (aka homo sapiens)
C: bos (cattle) (aka bos)
D: primate (aka primates)
E: bos bubalis (aka bubalus bubalis)
F: bovidae
G: birds (aka aves)
H: bos primigenius taurus (aka bos taurus)
I: genus
J: bovinae
K: None of the above. | [H; B] |
<Instruct>: Given the context 'They were incubated with 20,000 units/ml β-glucuronidase from bovine liver (Sigma) in 50 mM Hepes (pH 7.5) containing 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, 0.5% saponin with or without 10 mM M6P overnight on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine; human]
<Options>: A: boveria
B: human (aka homo sapiens)
C: primate (aka primates)
D: suborder
E: bovidae
F: bos bubalis bubalis (aka bubalus bubalis bubalis)
G: bos taurus x bos indicus (aka bos indicus x bos taurus)
H: bovine (aka bos taurus)
I: this
J: avian (aka aves)
K: None of the above. | [H; B] |
<Instruct>: Given the context 'Briefly, confluent cell cultures were washed twice with pre-warmed serum-free DMEM followed by incubation with DMEM containing 5 mg/ml human serum albumin and 10 mM M6P for 20 minutes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: suborder
B: species
C: homo sapiens (human) (aka homo sapiens)
D: biota (aka cellular organisms)
E: this
F: None of the above. | [C] |
<Instruct>: Given the context 'Cells were then incubated in DMEM containing 5 mg/ml human serum albumin alone or 4000 units β-glucuronidase with or without 10 mM M6P for 2 hours at 37°C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: species
B: animals (aka metazoa)
C: biota (aka cellular organisms)
D: homo sapiens (human) (aka homo sapiens)
E: mammals (aka mammalia)
F: None of the above. | [D] |
<Instruct>: Given the context 'For example, Britto and Elliot reported that the loss of abductor pollicis longus and extensor pollicis brevis in their two patients did not show functional compromise of strength and grip strength', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: theraps
B: mus <genus> (mice (aka mus <genus>))
C: suborder
D: homo sapiens (human) (aka homo sapiens)
E: this
F: None of the above. | [D] |
<Instruct>: Given the context 'Genomic-Bioinformatic Analysis of Transcripts Enriched in the Third-Stage Larva of the Parasitic Nematode Ascaris suum
Abstract
Differential transcription in Ascaris suum was investigated using a genomic-bioinformatic approach.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ascaris suum]
<Options>: A: pig roundworm (aka ascaris suum)
B: ascaris ovis
C: ascaris muris (aka mastophorus muris)
D: trichuris trichiura (ascaris trichiura) (aka trichuris trichiura)
E: ascaris equorum (aka parascaris equorum)
F: None of the above. | [A] |
<Instruct>: Given the context 'A cDNA archive enriched for molecules in the infective third-stage larva (L3) of A. suum was constructed by suppressive-subtractive hybridization (SSH), and a subset of cDNAs from 3075 clones subjected to microarray analysis using cDNA probes derived from RNA from different developmental stages of A. suum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: eubacterium suis (aka actinobaculum suis)
B: suina (suiformes) (aka suina)
C: actinobacillus suis
D: maratus suae
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: carinogammarinae
C: drosophila elegans
D: caenorhabditis vulgaris (aka caenorhabditis remanei)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: caenorhabditis briggsae (rhabditis briggsae) (aka caenorhabditis briggsae)
G: cryptococcus neoformans var. grubii
H: cryptococcus neoformans h99 (aka cryptococcus neoformans var. grubii h99)
I: sabacon briggsi
J: zodarion elegans (enyo elegans) (aka zodarion elegans)
K: None of the above. | [A; F] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: zodarion elegans (enyo elegans) (aka zodarion elegans)
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: carinogammarinae
D: cryptococcus neoformans var. grubii
E: drosophila elegans
F: cryptococcus neoformans h99 (aka cryptococcus neoformans var. grubii h99)
G: caenorhabditis vulgaris (aka caenorhabditis remanei)
H: sabacon briggsi
I: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
J: None of the above. | [B; J] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: caenorhabditis briggsae (rhabditis briggsae) (aka caenorhabditis briggsae)
B: rhabditis elegans (aka caenorhabditis elegans)
C: polyzonia elegans
D: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
E: caenorhabditis vulgaris (aka caenorhabditis remanei)
F: cryptococcus neoformans var. grubii
G: elegans subgroup (in: mosquitos)
H: ectopsocus briggsi
I: cutibacterium granulosum (corynebacterium granulosum) (aka cutibacterium granulosum)
J: cryptococcus neoformans var. grubii cng9
K: None of the above. | [B; A] |
<Instruct>: Given the context 'Transcripts encoding protein kinases, protein phosphatases (and their precursors), and enolases were abundantly represented in the L3 of A. suum, as were molecules involved in cellular processes, such as ubiquitination and proteasome function, gene transcription, protein–protein interactions, and function.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: actinomyces suis (aka actinobaculum suis)
B: suillus
C: maratus suae
D: suaeda vera (suaeda fruticosa mult. auct.) (aka suaeda vera)
E: suillia
F: None of the above. | [F] |
<Instruct>: Given the context 'In silico analyses inferred the C. elegans orthologues/homologues (n = 50) to be involved in apoptosis and insulin signaling (2%), ATP synthesis (2%), carbon metabolism (6%), fatty acid biosynthesis (2%), gap junction (2%), glucose metabolism (6%), or porphyrin metabolism (2%), although 34 (68%) of them could not be mapped to a specific metabolic pathway.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: theocolax elegans
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: elegans subgroup (in: mosquitos)
D: rhabditis elegans (aka caenorhabditis elegans)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'Functionally, 17 (34%) of them were predicted to be associated with (non-wild-type) RNAi phenotypes in C. elegans, the majority being embryonic lethality (Emb) (13 types; 58.8%), larval arrest (Lva) (23.5%) and larval lethality (Lvl) (47%).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: flies)
B: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
C: uca elegans (aka tubuca elegans)
D: enyo elegans (aka zodarion elegans)
E: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'A genetic interaction network was predicted for these 17 C. elegans orthologues, revealing highly significant interactions for nine molecules associated with embryonic and larval development (66.9%), information storage and processing (5.1%), cellular processing and signaling (15.2%), metabolism (6.1%), and unknown function (6.7%).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: caromyxa elegans (aka mutinus elegans)
C: elegans subgroup (in: mosquitos)
D: caenorhabditis vulgaris (aka caenorhabditis remanei)
E: zodarion elegans (enyo elegans) (aka zodarion elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'The potential roles of these molecules in development are discussed in relation to the known roles of their homologues/orthologues in C. elegans and some other nematodes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis sp.
B: elegans subgroup (in: flies)
C: rhabditis elegans (aka caenorhabditis elegans)
D: elegans subgroup (in: mosquitos)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'The results of the present study provide a basis for future functional genomic studies to elucidate molecular aspects governing larval developmental processes in A. suum and/or the transition to parasitism.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
B: maratus suae
C: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
D: sueus
E: suiformes (aka suina)
F: None of the above. | [F] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: this
B: trichuris
C: graphomya americana
D: ascaris trichiura (aka trichuris trichiura)
E: trichocephalus ovis (aka trichuris ovis)
F: agchylostoma duodenale (aka ancylostoma duodenale)
G: genus
H: ancylomia disparalis (aka ancylolomia disparalis)
I: trichuris vulpis (trichocephalus vulpis) (aka trichuris vulpis)
J: acanthoscelio americanus
K: human (aka homo sapiens)
L: new world hookworm (aka necator americanus)
M: ancylocaris
N: campsicnemus americanus
O: musculus
P: mocuellus americanus
Q: homo (humans) (aka homo)
R: ancylodes
S: ancylus
T: trichocephalus muris (aka trichuris muris)
U: None of the above. | [K; F; L; D] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: human (aka homo sapiens)
B: ancyloscelis
C: new world hookworm (aka necator americanus)
D: trichocephaloidis
E: cellular organisms (biota) (aka cellular organisms)
F: agchylostoma duodenale (aka ancylostoma duodenale)
G: pseudopleuronectes americanus (pleuronectes americanus) (aka pseudopleuronectes americanus)
H: ancylostoma ceylanicum
I: aporcelaimus americanus (aporcelaimus americanum) (aka aporcelaimus americanus)
J: uromyces americanus
K: trichocephalus
L: musculus
M: graphomya americana
N: trichuris
O: ancylostomia
P: trichuris trichiura (ascaris trichiura) (aka trichuris trichiura)
Q: pig whipworm (aka trichuris suis)
R: ancyluris
S: probles
T: birds (aka aves)
U: None of the above. | [A; F; C; P] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: other (aka unidentified)
B: ancylus
C: ancylostoma braziliense
D: ancylostoma duodenale (agchylostoma duodenale) (aka ancylostoma duodenale)
E: this
F: ancylis sp. a
G: ascaris trichiura (aka trichuris trichiura)
H: trichuris
I: trichocephalus muris (aka trichuris muris)
J: ancylis
K: trichocephalus
L: mocuellus americanus
M: homo sapiens (human) (aka homo sapiens)
N: graphomya americana
O: family
P: entomoscelis americana
Q: trichuris vulpis (trichocephalus vulpis) (aka trichuris vulpis)
R: new world hookworm (aka necator americanus)
S: musculus
T: pseudopleuronectes americanus (pleuronectes americanus) (aka pseudopleuronectes americanus)
U: None of the above. | [M; D; R; G] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: entomoscelis americana
B: ancylostoma braziliense
C: family
D: trichocephalus
E: ancylus
F: other (aka unidentified)
G: ancylis sp. a
H: trichuris
I: mocuellus americanus
J: ancylis
K: musculus
L: this
M: trichuris vulpis (trichocephalus vulpis) (aka trichuris vulpis)
N: ancylostoma duodenale (agchylostoma duodenale) (aka ancylostoma duodenale)
O: graphomya americana
P: ascaris trichiura (aka trichuris trichiura)
Q: pseudopleuronectes americanus (pleuronectes americanus) (aka pseudopleuronectes americanus)
R: trichocephalus muris (aka trichuris muris)
S: homo sapiens (human) (aka homo sapiens)
T: None of the above. | [S; N; T; P] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: uromyces americanus
B: genus
C: species group
D: homo sapiens (human) (aka homo sapiens)
E: animals (aka metazoa)
F: trichocerca
G: trichoneura
H: ancylostomatinae
I: necator americanus (new world hookworm) (aka necator americanus)
J: trichiura
K: human whipworm (aka trichuris trichiura)
L: ancylostoma ceylanicum
M: trichuris vulpis (trichocephalus vulpis) (aka trichuris vulpis)
N: ancylostomatidae
O: spiralomyces americanus
P: pseudopleuronectes americanus (pleuronectes americanus) (aka pseudopleuronectes americanus)
Q: agchylostoma duodenale (aka ancylostoma duodenale)
R: aporcelaimus americanum (aka aporcelaimus americanus)
S: ancylomia disparalis (aka ancylolomia disparalis)
T: biota (aka cellular organisms)
U: None of the above. | [D; Q; I; K] |
<Instruct>: Given the context '[1], causing serious adverse effects on human health, particularly in children.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; children]
<Options>: A: species
B: animals (aka metazoa)
C: humans (aka homo)
D: family
E: cellular organisms (biota) (aka cellular organisms)
F: this
G: homo sapiens (human) (aka homo sapiens)
H: neonetus
I: None of the above. | [G; G] |
<Instruct>: Given the context '[1], causing serious adverse effects on human health, particularly in children.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; children]
<Options>: A: probles
B: mammals (aka mammalia)
C: chicken (aka gallus gallus)
D: homo sapiens (human) (aka homo sapiens)
E: animals (aka metazoa)
F: species
G: family
H: gallus
I: None of the above. | [D; D] |
<Instruct>: Given the context 'Similarly, parasitic nematodes of livestock, such as pigs, also cause substantial economic losses due to subclinical and clinical diseases, with billions of dollars spent annually on the treatment and control of gastro-intestinal nematodes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: chickens (aka gallus gallus)
B: gallus
C: pigs (aka sus scrofa) (aka sus scrofa)
D: boars (aka suidae)
E: guinea-pigs (aka cavia)
F: None of the above. | [C] |
<Instruct>: Given the context 'Compared with the free-living nematode Caenorhabditis elegans, there is very little information on fundamental molecular aspects of development in parasitic nematodes [6]–[8].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: polyzonia elegans
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
D: caenorhabditis sp.
E: uca elegans (aka tubuca elegans)
F: None of the above. | [B] |
<Instruct>: Given the context 'Compared with the free-living nematode Caenorhabditis elegans, there is very little information on fundamental molecular aspects of development in parasitic nematodes [6]–[8].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
B: uca elegans (aka tubuca elegans)
C: polyzonia elegans
D: caenorhabditis sp.
E: None of the above. | [E] |
<Instruct>: Given the context 'Since the genome sequence of C. elegans was published in 1998 [9], many aspects of the molecular biology of this nematode have been elucidated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis
B: zodarion elegans (enyo elegans) (aka zodarion elegans)
C: rhabditis elegans (aka caenorhabditis elegans)
D: caenorhabditis vulgaris (aka caenorhabditis remanei)
E: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
F: None of the above. | [C] |
<Instruct>: Given the context 'For instance, microarray analyses have been used to examine developmental and gender-enriched gene expression [10],[11], and the functions of more than 96% of the C. elegans genes have been assessed by double-stranded RNA interference (RNAi, or gene silencing;', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uca elegans (aka tubuca elegans)
B: caenorhabditis sp.
C: rhabditis elegans (aka caenorhabditis elegans)
D: elegans subgroup (in: flies)
E: drosophila elegans
F: None of the above. | [C] |
<Instruct>: Given the context 'Comparative analyses of genetic data sets have shown that parasitic nematodes usually share ∼50–70% of genes with C. elegans (e.g., [19],[20]).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: elegans subgroup (in: flies)
C: uca elegans (aka tubuca elegans)
D: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
E: caenorhabditis sp.
F: None of the above. | [A] |
<Instruct>: Given the context 'There is similarity in other features (such as basic body plan and moulting) between C. elegans and parasitic nematodes, suggesting that some molecular pathways are relatively conserved [8],[21].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis sp.
B: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
C: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
D: enyo elegans (aka zodarion elegans)
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Despite the advances in genomic technologies [7], [22]–[29] and the study of C. elegans, there is a paucity of information on the genomics of parasitic nematodes of animals, particularly in relation to development.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis sp.
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: uronema elegans
D: bactris elegans
E: enyo elegans (aka zodarion elegans)
F: None of the above. | [B] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: domestic guinea pig (aka cavia porcellus)
B: swine (aka sus scrofa)
C: pigs (aka suidae) (aka suidae)
D: genus
E: chickens (aka gallus gallus)
F: guinea-pigs (aka cavia)
G: homo sapiens (human) (aka homo sapiens)
H: species
I: kingdom
J: biota (aka cellular organisms)
K: guinea pig (aka cavia porcellus)
L: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
M: None of the above. | [G; B; B] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: sus domestica (aka sus scrofa domesticus)
B: biota (aka cellular organisms)
C: chickens (aka gallus gallus)
D: domestic guinea pig (aka cavia porcellus)
E: wild boar (aka sus scrofa)
F: hominoidea (apes (aka hominoidea))
G: boars (aka suidae)
H: sus domesticus (aka sus scrofa domesticus)
I: guinea-pigs (aka cavia)
J: guinea pig (aka cavia porcellus)
K: animals (aka metazoa)
L: neanderthal man (aka homo sapiens neanderthalensis)
M: homo sapiens (human) (aka homo sapiens)
N: bovidae
O: None of the above. | [M; E; E] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: gallus
B: primate (aka primates)
C: sus scrofa domestica (aka sus scrofa domesticus)
D: birds (aka aves)
E: boars (aka suidae)
F: neanderthal man (aka homo sapiens neanderthalensis)
G: genus
H: suidae (pigs (aka suidae))
I: swine (aka sus scrofa)
J: homo sapiens (human) (aka homo sapiens)
K: guinea-pigs (aka cavia)
L: gallus domesticus (aka gallus gallus)
M: chickens (aka gallus gallus)
N: None of the above. | [J; I; I] |
<Instruct>: Given the context 'In the present study, Ascaris from pigs was used to study molecules abundantly transcribed in the infective third-stage larva (L3).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: domestic pig (aka sus scrofa domesticus)
B: pigs (aka sus scrofa) (aka sus scrofa)
C: chickens (aka gallus gallus)
D: domestic guinea pig (aka cavia porcellus)
E: guinea-pigs (aka cavia)
F: None of the above. | [B] |
<Instruct>: Given the context 'Following the oral ingestion of Ascaris eggs by the host (human or pig), L3s are released and then invade/penetrate predominantly the caecal wall', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; pig]
<Options>: A: species
B: bovidae
C: kingdom
D: biota (aka cellular organisms)
E: animals (aka metazoa)
F: gallus
G: mus porcellus (aka cavia porcellus)
H: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
I: wild boar (aka sus scrofa)
J: homo sapiens (human) (aka homo sapiens)
K: None of the above. | [J; I] |
<Instruct>: Given the context 'Following the oral ingestion of Ascaris eggs by the host (human or pig), L3s are released and then invade/penetrate predominantly the caecal wall', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; pig]
<Options>: A: animals (aka metazoa)
B: sus scrofa (pigs (aka sus scrofa))
C: primate (aka primates)
D: chickens (aka gallus gallus)
E: sus domestica (aka sus scrofa domesticus)
F: homo sapiens (human) (aka homo sapiens)
G: bovidae
H: mammals (aka mammalia)
I: genus
J: suidae (pigs (aka suidae))
K: None of the above. | [F; B] |
<Instruct>: Given the context 'Here, we constructed an L3-enriched cDNA library using the method of suppressive-subtractive hybridization (SSH), explored transcription of a representative subset of molecules by microarray analysis and conducted bioinformatic analyses to characterize these molecules, map them to biochemical pathways and predict genetic interactions based on comparisons with C. elegans and/or other organisms.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis vulgaris (aka caenorhabditis remanei)
B: rhabditis elegans (aka caenorhabditis elegans)
C: caenorhabditis sp.
D: cyclostrongylus elegans
E: caromyxa elegans (aka mutinus elegans)
F: None of the above. | [B] |
<Instruct>: Given the context 'Here, we constructed an L3-enriched cDNA library using the method of suppressive-subtractive hybridization (SSH), explored transcription of a representative subset of molecules by microarray analysis and conducted bioinformatic analyses to characterize these molecules, map them to biochemical pathways and predict genetic interactions based on comparisons with C. elegans and/or other organisms.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis sp.
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: caromyxa elegans (aka mutinus elegans)
D: cyclostrongylus elegans
E: None of the above. | [E] |
<Instruct>: Given the context 'Materials and Methods
Production of Different Developmental Stages of Ascaris
Experimental pigs (8–12 weeks of age) were purchased from and maintained in the Experimental Animal Center of South China Agricultural University.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: guinea-pigs (aka cavia)
B: gallus
C: sus scrofa (pigs (aka sus scrofa))
D: boars (aka suidae)
E: chickens (aka gallus gallus)
F: None of the above. | [C] |
<Instruct>: Given the context 'These pigs were treated humanely, according to the Animal Ethics procedures and guidelines of the People's Republic of China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: sus domesticus (aka sus scrofa domesticus)
B: gallus
C: guinea-pigs (aka cavia)
D: wild boar (aka sus scrofa)
E: pigs (aka suidae) (aka suidae)
F: None of the above. | [D] |
<Instruct>: Given the context 'Adult worms (males and females) of A. suum were collected from the small intestines of pigs from an abattoir in Shenzhen, China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pigs]
<Options>: A: guinea-pigs (aka cavia)
B: wild boar (aka sus scrofa)
C: actinobacillus suis
D: mus porcellus (aka cavia porcellus)
E: sus scrofa domestica (aka sus scrofa domesticus)
F: suillus
G: pigs (aka suidae) (aka suidae)
H: suillia
I: suarius
J: sueus
K: None of the above. | [K; B] |
<Instruct>: Given the context 'Adult worms (males and females) of A. suum were collected from the small intestines of pigs from an abattoir in Shenzhen, China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pigs]
<Options>: A: aerococcus suis
B: wild boar (aka sus scrofa)
C: guinea-pigs (aka cavia)
D: maratus suae
E: gallus
F: actinomyces suis (aka actinobaculum suis)
G: suillus indicus (suillus indica) (aka suillus indicus)
H: guinea pig (aka cavia porcellus)
I: sus domestica (aka sus scrofa domesticus)
J: paracoccus suum
K: None of the above. | [K; B] |
<Instruct>: Given the context 'Infective eggs and infective L3s of A. suum were produced according to the methods described previously [38].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suiformes (aka suina)
B: suaeda fruticosa mult. auct. (aka suaeda vera)
C: paracoccus suum
D: eubacterium suis (aka actinobaculum suis)
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'In brief, eggs from the uteri of adult females of A. suum were collected and incubated at 28°C for 28 days to allow them to develop to infective eggs (containing infective L3s).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: aerococcus suis
B: maratus suae
C: suillus indica (aka suillus indicus)
D: suidae (pigs (aka suidae))
E: sueus
F: None of the above. | [F] |
<Instruct>: Given the context 'Following the experimental infection of helminth-free pigs with infective Ascaris eggs as described previously [39], the L3s from livers and in lungs as well as L4s in intestines were isolated according to an established method [40].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: sus scrofa (pigs (aka sus scrofa))
B: domestic pig (aka sus scrofa domesticus)
C: boars (aka suidae)
D: chickens (aka gallus gallus)
E: guinea pig (aka cavia porcellus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)
Total RNA was isolated from adult females and males, different larval stages or eggs of A. suum using TriPure reagent (Roche) as recommended by the manufacturer.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: paracoccus suum
B: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
C: aerococcus suis
D: sueus
E: maratus suae
F: None of the above. | [F] |
<Instruct>: Given the context 'The cDNA obtained following SSH was cloned into the pGEM-T Easy plasmid vector (Promega) and competent Escherichia coli (JM109) transformed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: bacterium coli (aka escherichia coli)
B: enterobacteria (aka enterobacteriaceae)
C: unspecified coliform bacterium
D: bacteria (ex cavalier-smith 1987) (aka bacteria)
E: enterobacterales (enterobacteriaceae and related endosymbionts) (aka enterobacterales)
F: None of the above. | [A] |
<Instruct>: Given the context 'Sixteen blanks (using spotting solution only) and the same number of negative (irrelevant cDNAs with no relationship to Ascaris) were also printed on to slides and served as negative controls; β-actin of A. suum served as a positive control to assess the efficiency of labeling and hybridization.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: paracoccus suum
B: suillus
C: suiformes (aka suina)
D: suillia
E: aerococcus suis
F: None of the above. | [F] |
<Instruct>: Given the context 'Labeling of cDNA Probes with Fluorescent Dyes, and Microarray Analysis
The cDNAs produced from total RNA from A. suum eggs, infective L3s, L3s isolated from pig liver or lung, fourth-stage larvae (L4s), adult males or females [as described in the section ‘Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)’] were labeled with cyanine dyes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pig]
<Options>: A: sus scrofa (pigs (aka sus scrofa))
B: suillus
C: chickens (aka gallus gallus)
D: pigs (aka suidae) (aka suidae)
E: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
F: domestic pig (aka sus scrofa domesticus)
G: gallus
H: suina (suiformes) (aka suina)
I: paracoccus suum
J: suillus indica (aka suillus indicus)
K: None of the above. | [K; A] |
<Instruct>: Given the context 'Labeling of cDNA Probes with Fluorescent Dyes, and Microarray Analysis
The cDNAs produced from total RNA from A. suum eggs, infective L3s, L3s isolated from pig liver or lung, fourth-stage larvae (L4s), adult males or females [as described in the section ‘Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)’] were labeled with cyanine dyes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pig]
<Options>: A: domestic guinea pig (aka cavia porcellus)
B: sus scrofa (pigs (aka sus scrofa))
C: suillus indica (aka suillus indicus)
D: suidae (pigs (aka suidae))
E: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
F: suina (suiformes) (aka suina)
G: aerococcus suis
H: chickens (aka gallus gallus)
I: gallus
J: maratus suae
K: None of the above. | [K; B] |
<Instruct>: Given the context 'Microarray slides were incubated with a pre-hybridization solution [5×SSC, 1% bovine serum albumin (BSA), 0.1% sodium dodecyl-sulphate (SDS)] for 6 h at 42°C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine]
<Options>: A: bos taurus x bos indicus (aka bos indicus x bos taurus)
B: boveria
C: bos primigenius taurus (aka bos taurus)
D: bos bubalis bubalis (aka bubalus bubalis bubalis)
E: cattle (aka bos)
F: None of the above. | [C] |
<Instruct>: Given the context 'Double-stranded cDNA was synthesized from total RNA (separately) from each stage or sex of A. suum using reverse transcriptase (Superscript III, Invitrogen).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
B: eubacterium suis (aka actinobaculum suis)
C: suaeda vera (suaeda fruticosa mult. auct.) (aka suaeda vera)
D: suarius
E: suillia
F: None of the above. | [F] |
<Instruct>: Given the context 'The PCR amplification of a portion (209 bp) of the β-actin gene (accession no. BI594141) using forward primer (5′-CTCGAAACAAGAATACGATG-3′) and reverse primer (5′- ACATGTGCCGTTGTATGATG-3′), previously determined to be present in all developmental stages and both sexes of A. suum', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: maratus suae
B: suaeda fruticosa mult. auct. (aka suaeda vera)
C: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
D: paracoccus suum
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'Following the processing of the sequences (i.e., removal of vector sequences, quality assurance and clustering), contigs or singletons from individual clusters were subjected to BLASTx (NCBI: www.ncbi.nlm.nih.gov) and BLASTn (EMBL-EBI Parasite Genome Blast Server: www.ebi.ac.uk) analysis to identify putative homologues in C. elegans, other nematodes and other organisms (e-value of ≤1e-05).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
B: rhabditis elegans (aka caenorhabditis elegans)
C: caenorhabditis vulgaris (aka caenorhabditis remanei)
D: bactris elegans
E: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
F: None of the above. | [B] |
<Instruct>: Given the context 'Following the processing of the sequences (i.e., removal of vector sequences, quality assurance and clustering), contigs or singletons from individual clusters were subjected to BLASTx (NCBI: www.ncbi.nlm.nih.gov) and BLASTn (EMBL-EBI Parasite Genome Blast Server: www.ebi.ac.uk) analysis to identify putative homologues in C. elegans, other nematodes and other organisms (e-value of ≤1e-05).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
B: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
C: caenorhabditis vulgaris (aka caenorhabditis remanei)
D: bactris elegans
E: None of the above. | [E] |
<Instruct>: Given the context 'WormBase (www.wormbase.org) was interrogated extensively for relevant information on C. elegans homologues/orthologues, including RNAi phenotypic, transcriptomic, proteomic and interactomic data.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: myzomyia elegans (aka anopheles elegans)
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: cyclostrongylus elegans
D: elegans subgroup (in: mosquitos)
E: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'ESTs with homologues/orthologues in C. elegans and other nematodes were also subjected to analysis employing the KEGG Orthology-Based Annotation System (KOBAS) (www.kobas.cbi.pku.edu.cn), which predicts the biochemical pathways in which molecules are involved.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: theocolax elegans
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: cyclostrongylus elegans
D: uca elegans (aka tubuca elegans)
E: elegans subgroup (in: flies)
F: None of the above. | [B] |
<Instruct>: Given the context 'The open reading frames (ORFs) inferred from selected ESTs with orthologues in C. elegans were also subjected to “secretome analysis” using the program SignalP v.2.0 www.cbs.dtu.dk/services/SignalP/), employing both the neural network and hidden Markov models to predict signal peptides and/or anchors [46]–[48].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: caenorhabditis sp.
C: theocolax elegans
D: bactris elegans
E: caromyxa elegans (aka mutinus elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'The method established by Zhong and Sternberg [53] was used to predict the interactions for C. elegans orthologues of the L3-enriched molecules from Ascaris.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
C: caenorhabditis sp.
D: theocolax elegans
E: elegans subgroup (in: mosquitos)
F: None of the above. | [A] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
B: mus sp. (mice (aka mus sp.))
C: drosophila (aka drosophila <basidiomycete fungi>)
D: mus musculus (house mouse) (aka mus musculus)
E: genus
F: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
G: kingdom
H: saccharomyces hansenii (aka debaryomyces hansenii)
I: fruit fly (aka drosophila melanogaster)
J: biota (aka cellular organisms)
K: placental mammals (aka eutheria)
L: human (aka homo sapiens)
M: saccharomycodes
N: mus molossinus (aka mus musculus molossinus)
O: medfly (aka ceratitis capitata)
P: saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (aka saccharomyces cerevisiae)
Q: mus (aka mus <subgenus>) (aka mus <subgenus>)
R: drosophila <flies,subgenus> (drosophila) (aka drosophila <flies,subgenus>)
S: saccharomyces albicans (aka candida albicans)
T: candida/saccharomycetales (aka candida/saccharomycales clade)
U: None of the above. | [I; P; D; L] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
B: saccharomyceta
C: mus (aka mus <subgenus>) (aka mus <subgenus>)
D: human (aka homo sapiens)
E: fruit fly (aka drosophila <flies,genus>)
F: fruit fly (aka drosophila melanogaster)
G: flies (aka diptera)
H: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
I: this
J: candida/saccharomycetales (aka candida/saccharomycales clade)
K: mammals (aka mammalia)
L: medfly (aka ceratitis capitata)
M: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
N: primate (aka primates)
O: mus cricetus (aka cricetus cricetus)
P: saccharomyces hansenii (aka debaryomyces hansenii)
Q: mus musculus (house mouse) (aka mus musculus)
R: saccharomycotina (budding yeasts & others) (aka saccharomycotina)
S: genus
T: western european house mouse (aka mus musculus domesticus)
U: None of the above. | [F; M; Q; D] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: lepidoptera (butterflies and moths) (aka lepidoptera)
B: species
C: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
D: mouse (aka mus musculus)
E: saccharomyces hansenii (aka debaryomyces hansenii)
F: kingdom
G: mus molossinus (aka mus musculus molossinus)
H: flies (aka diptera)
I: fruit fly (aka drosophila melanogaster)
J: avian (aka aves)
K: saccharomyces cf. cerevisiae
L: drosophila <flies,genus> (fruit flies) (aka drosophila <flies,genus>)
M: mice (aka mus <genus>) (aka mus <genus>)
N: homo sapiens (human) (aka homo sapiens)
O: bactrocera melanogaster (bactrocera (bactrocera) melanogaster) (aka bactrocera melanogaster)
P: saccharomyces sp.
Q: saccharomyces lactis (aka kluyveromyces lactis)
R: mus <subgenus> (mus (aka mus <subgenus>))
S: peromyscus
T: cellular organisms (biota) (aka cellular organisms)
U: None of the above. | [I; C; D; N] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
B: mycoderma cerevisiae (aka saccharomyces cerevisiae)
C: saccharomycetes (hemiascomycetes) (aka saccharomycetes)
D: mus domesticus (aka mus musculus domesticus)
E: saccharomyces sp.
F: fruit flies (aka drosophila <flies,genus>)
G: fruit fly (aka drosophila melanogaster)
H: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
I: kingdom
J: saccharomycodes
K: mus sp. (mice (aka mus sp.))
L: homo (humans) (aka homo)
M: human (aka homo sapiens)
N: mus musculus (house mouse) (aka mus musculus)
O: saccharomyces hansenii (aka debaryomyces hansenii)
P: cellular organisms (biota) (aka cellular organisms)
Q: bactrocera <subgenus> (bactrocera (bactrocera)) (aka bactrocera <subgenus>)
R: drosophila <basidiomycete fungi> (drosophila) (aka drosophila <basidiomycete fungi>)
S: mammals (aka mammalia)
T: mus cricetus (aka cricetus cricetus)
U: None of the above. | [G; B; N; M] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: mus sp. (mice (aka mus sp.))
B: human (aka homo sapiens)
C: saccharomyces sp.
D: fruit flies (aka drosophila <flies,genus>)
E: mus domesticus (aka mus musculus domesticus)
F: saccharomyces hansenii (aka debaryomyces hansenii)
G: saccharomycetes (hemiascomycetes) (aka saccharomycetes)
H: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
I: fruit fly (aka drosophila melanogaster)
J: kingdom
K: drosophila <basidiomycete fungi> (drosophila) (aka drosophila <basidiomycete fungi>)
L: cellular organisms (biota) (aka cellular organisms)
M: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
N: mycoderma cerevisiae (aka saccharomyces cerevisiae)
O: saccharomycodes
P: mammals (aka mammalia)
Q: homo (humans) (aka homo)
R: mus cricetus (aka cricetus cricetus)
S: bactrocera <subgenus> (bactrocera (bactrocera)) (aka bactrocera <subgenus>)
T: None of the above. | [I; N; T; B] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: myzomyia elegans (aka anopheles elegans)
B: caenorhabditis
C: caenorhabditis sp.
D: rhabditis elegans (aka caenorhabditis elegans)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'Results
To identify molecules transcribed abundantly in the L3 of A. suum, an enriched cDNA library was constructed by SSH.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus
B: suaeda fruticosa mult. auct. (aka suaeda vera)
C: suillia
D: suidae (pigs (aka suidae))
E: sueus
F: None of the above. | [F] |
<Instruct>: Given the context 'Of the 2671 (duplicate) spots, 1526 had a significant difference in hybridization between infective L3 cDNA and cDNAs from all other stages or sexes of A. suum, of which 515 had a >2.0-fold increased hybridization for the L3.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: paracoccus suum
B: suiformes (aka suina)
C: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
D: pigs (aka suidae) (aka suidae)
E: suarius
F: None of the above. | [F] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: tomicodon briggsi
C: caenorhabditis
D: actinobacillus suis
E: paracoccus suum
F: caenorhabditis vulgaris (aka caenorhabditis remanei)
G: sabacon briggsi
H: elegans subgroup (in: flies)
I: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
J: theocolax elegans
K: aerococcus suis
L: eubacterium suis (aka actinobaculum suis)
M: rhabditis briggsae (aka caenorhabditis briggsae)
N: [candida] gorgasii (candida gorgasii) (aka [candida] gorgasii)
O: carinogammarinae
P: None of the above. | [P; A; M] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: suarius
B: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
C: uronema elegans
D: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
E: trichomycterus brigadeirensis
F: paracoccus suum
G: bactris elegans
H: cyclostrongylus elegans
I: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
J: sabacon briggsi
K: caenorhabditis briggsae (rhabditis briggsae) (aka caenorhabditis briggsae)
L: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
M: suiformes (aka suina)
N: cryptococcus neoformans var. grubii cng9
O: rasbora brigittae (aka boraras brigittae)
P: None of the above. | [P; D; K] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: suaeda fruticosa mult. auct. (aka suaeda vera)
B: actinobacillus suis
C: drosophila elegans
D: [candida] gorgasii (candida gorgasii) (aka [candida] gorgasii)
E: rasbora brigittae (aka boraras brigittae)
F: suillus
G: [candida] broadrunensis (candida broadrunensis) (aka [candida] broadrunensis)
H: cryptococcus neoformans var. grubii cng9
I: maratus suae
J: aerococcus suis
K: elegans subgroup (in: mosquitos)
L: rhabditis briggsae (aka caenorhabditis briggsae)
M: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
N: rhabditis elegans (aka caenorhabditis elegans)
O: enyo elegans (aka zodarion elegans)
P: None of the above. | [P; N; L] |
<Instruct>: Given the context 'Comparative analysis specifically against A. suum EST data sets (n∼42,000) available in public databases confirmed independently that the majority of molecules (>60%) were present exclusively in the infective L3 stage or were orphans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: sueus
B: suillia
C: suarius
D: aerococcus suis
E: maratus suae
F: None of the above. | [F] |
<Instruct>: Given the context '[54], this approach was employed to predict the classification and gene function of molecules enriched in infective L3 of A. suum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: maratus suae
B: pigs (aka suidae) (aka suidae)
C: suina (suiformes) (aka suina)
D: suillia
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'A focused KOBAS analysis inferred the 50 C. elegans orthologues/homologues to be involved in apoptosis and insulin signaling (2%), ATP synthesis (2%), carbon metabolism (6%), fatty acid biosynthesis (2%), gap junction (2%), glucose metabolism (6%) or porphyrin metabolism (2%), although 34 (68%) of them could not be mapped to a specific metabolic pathway (Table 2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: mosquitos)
B: rhabditis elegans (aka caenorhabditis elegans)
C: myzomyia elegans (aka anopheles elegans)
D: enyo elegans (aka zodarion elegans)
E: theocolax elegans
F: None of the above. | [B] |
<Instruct>: Given the context 'Functionally, 17 (34%) of the 50 molecules were associated with (non-wild-type) RNAi phenotypes in C. elegans, the majority displaying embryonic lethality (Emb) (13 types; 58.8%), larval arrest (Lva) (23.5%) and larval lethality (Lvl) (47%) (Table 2).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
C: cyclostrongylus elegans
D: elegans subgroup (in: mosquitos)
E: drosophila elegans
F: None of the above. | [A] |
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