query stringclasses 175 values | positive listlengths 1 9 | negative listlengths 10 10 | system stringlengths 69 2.19k |
|---|---|---|---|
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'This finding suggests that sigma-1 receptors are involved in the mechanism of action of fluvoxamine in the human brain [45].', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Alexithymia and anxiety in female chronic pain patients
Abstract
Objectives
Alexithymia is highly prevalent among chronic pain patients.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Alexithymia and anxiety in female chronic pain patients
Abstract
Objectives
Alexithymia is highly prevalent among chronic pain patients.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'The purpose of this study was to investigate the prevalence of alexithymia and to determine anxiety levels among DSM-IV somatoform pain disorder (chronic pain) female patients and to examine the relationship between alexithymia and the self-reporting of pain.
', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)"
] | [
"clientister",
"personidae",
"theraps",
"proxys",
"perna",
"pera",
"pero",
"aides",
"personopsis",
"inquisitor"
] | Given the context 'Thirty seven healthy females (mean age: 34,46 ± 7,43 years), who matched for sociodemographic features with the patient group, consisted the control group.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'A sociodemographic data form, 26-item Toronto Alexithymia Scale (TAS-26), Spielberger Trait Anxiety Inventory (STAI) were administered to each subject and information was obtained on several aspects of the patients' pain, including intensity (measured by VAS), and duration.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Results
Chronic pain patients were found significantly more alexithymic than controls.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Neither positive correlation nor significant difference was found between alexithymia and trait anxiety in pain patients.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Several studies have found a high prevalence of alexithymia in pain patients.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Chronic pain patients frequently exhibit many of the core features of alexithymia, such as problems in identifying and describing subjective feelings, impoverished imaginative abilities, and excessive preoccupation with physical symptoms and external events.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Although several studies have found a high prevalence of alexithymia in pain patients, the way alexithymia may possibly influence pain experience is still unclear [12,13].
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'In chronic pain disorder, patients complain of chronic pain, for which no physical etiology could be found or the underlying disorder is insufficient in explaining the symptoms.', answer the user's query. |
What is the biomedical concept corresponding to 'person'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"personidae",
"personopsis",
"humans (homo)",
"genus",
"kingdom",
"suborder",
"species",
"psyche",
"apalis personata",
"crinifer personatus (corythaixoides personatus)"
] | Given the context 'The alexithymic person's difficulty in identifying and describing feelings may increase symptom reporting by several mechanisms.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Accordingly, previous studies have found evidence of an association between alexithymia and the development of functional somatic symptoms, as seen in patients with somatoform disorders.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'The purpose of the present study was to investigate the prevalence of alexithymia among DSM-IV somatoform pain disorder (chronic pain) female patients and to examine the relationship between alexithymia and the self-reporting of pain in this group of patients.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'The purpose of the present study was to investigate the prevalence of alexithymia among DSM-IV somatoform pain disorder (chronic pain) female patients and to examine the relationship between alexithymia and the self-reporting of pain in this group of patients.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Besides, the study searched for the anxiety levels of chronic pain patients with or without alexithymia.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Patients with concomitant psychiatric disorders, such as major depression, anxiety disorders and somatoform disorders other than pain disorder were excluded.
Patients either directly applied to the psychiatry clinic themselves or were referred for psychiatric assessment from another outpatient clinic, mainly physical medicine and rehabilitation.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Patients with concomitant psychiatric disorders, such as major depression, anxiety disorders and somatoform disorders other than pain disorder were excluded.
Patients either directly applied to the psychiatry clinic themselves or were referred for psychiatric assessment from another outpatient clinic, mainly physical medicine and rehabilitation.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'The mean age of the patients and the healthy controls was 34,63 ± 10,62 (range: 16–62) and 34,46 ± 7,43 (range: 22–57) years and the educational level was 6,13 ± 3,03 (range: 5–11) and', answer the user's query. |
What is the biomedical concept corresponding to 'participants'? | [
"human (homo sapiens)"
] | [
"assessor",
"inquisitor",
"clientister",
"cohort",
"test organism",
"subsessor",
"athletes",
"exeristes",
"probles",
"suborder"
] | Given the context 'All participants were applied Structured Clinical Interview for DSM-IV (SCID-I)', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Regarding the pain assessment, information was first obtained on several aspects of the patients' pain, such as intensity, and duration.', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)"
] | [
"clientister",
"personidae",
"theraps",
"proxys",
"perna",
"pera",
"pero",
"aides",
"personopsis",
"inquisitor"
] | Given the context 'VAS is scored by measuring the distance from the end of the scale indicating absence of pain (or no distress or no pain relief) to the place marked by the patient', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Results
In the chronic pain group, 56.7% of patients (n = 17) had a score greater than 11 on the TAS-26, and were considered alexithymic.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'In the control group, 24,3% of patients (n = 9) were alexithymic according to TAS-26.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'The duration and severity of pain, TAS-26 scores, and STAI scores of the female pain patients are shown in Table 2.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'First, chronic pain patients were found significantly more alexithymic than controls (56,7% to 24,3%).', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Third, neither positive correlation nor significant difference was found between alexithymia and trait anxiety in pain patients.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Discussion
The results of the present study suggest that patients with chronic pain disorder are more alexithymic than individuals with no pain.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'There were no significant differences between alexithymic and nonalexitymic patients on self reports of current pain severity.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context '[1994] in which it was further pointed out that alexithymic patients were found to use significantly more verbal descriptors of pain compared to nonalexithymic patients', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context '[1994] in which it was further pointed out that alexithymic patients were found to use significantly more verbal descriptors of pain compared to nonalexithymic patients', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)"
] | [
"clientister",
"personidae",
"theraps",
"proxys",
"perna",
"pera",
"pero",
"aides",
"personopsis",
"inquisitor"
] | Given the context 'Pain is a subjective experience and each patient may communicate in a different way, verbally or nonverbally [29].', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Patients in this sample were sufferers of chronic pain, who had already chosen an approved way of expressing their distress.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'The duration of the patients' pain could approximately be determined, yet the preexisting level of alexithymia was not known.', answer the user's query. |
What is the biomedical concept corresponding to 'person'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"personidae",
"personopsis",
"humans (homo)",
"genus",
"kingdom",
"suborder",
"species",
"psyche",
"apalis personata",
"crinifer personatus (corythaixoides personatus)"
] | Given the context 'In the usual absence of internal stimuli, alexithymic person may be expected to maintain an external focus of attention, such as pain.', answer the user's query. |
What is the biomedical concept corresponding to 'person'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"personidae",
"personopsis",
"humans (homo)",
"genus",
"kingdom",
"suborder",
"species",
"psyche",
"apalis personata",
"crinifer personatus (corythaixoides personatus)"
] | Given the context 'Symptom chronicity may force the alexithymic person to attent to and amplify this somatic sensation.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Therefore, alexithymic patients might be expected to differ from nonalexithymic ones in their anxiety levels.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'Yet, in our pain group alexithymic patients showed no significant difference from the nonalexithymics on trait anxiety.', answer the user's query. |
What is the biomedical concept corresponding to 'patient'? | [
"human (homo sapiens)"
] | [
"clientister",
"personidae",
"theraps",
"proxys",
"perna",
"pera",
"pero",
"aides",
"personopsis",
"inquisitor"
] | Given the context 'The reasons may be lying in the specific characteristics of this patient group itself.
', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'The study included patients suffering from chronic symptoms; with an average of 7,44 ± 6,82 years of pain in the alexithymic and 3,31 ± 2,79 years in the nonalexithymic groups.', answer the user's query. |
What is the biomedical concept corresponding to 'patients'? | [
"human (homo sapiens)"
] | [
"clientister",
"theraps",
"personidae",
"proxys",
"perna",
"genus",
"aides",
"pero",
"inquisitor",
"plasmids"
] | Given the context 'It is not known whether it should be addressed in the treatment of pain patients, but a high level of alexithymia may effect the nature of assessment.', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus subtilis group",
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"unclass... | Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"cereus <sea anemones> (cereus)",
"bacillus cereus f (bacillus cereus strain f)",
"cereus <eudicots> (cereus)",
"bacillus cereus str. f (bacillus cereus f)",
"bacillus cereus strain f (bacillus cereus f)",
"bacillus cereus str. w (bacillu... | Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus cereus var. thuringiensis (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus subtilis group",
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"unclass... | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'anthrax'? | [
"anthrax (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)"
] | [
"anthrax",
"anthrenus",
"anthribola",
"anthrax anthrax (musca anthrax)",
"anthribus",
"anthrax subgroup",
"platypeza anthrax",
"lasiancistrus anthrax (pseudolithoxus anthrax)",
"unclassified anthrax",
"anthreptes"
] | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus cereus var. thuringiensis (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"cereus <sea anemones> (cereus)",
"bacillus cereus f (bacillus cereus strain f)",
"cereus <eudicots> (cereus)",
"bacillus cereus str. f (bacillus cereus f)",
"bacillus cereus strain f (bacillus cereus f)",
"bacillus cereus str. w (bacillu... | Given the context 'Abstract
The Bacillus cereus group of bacteria is an important group including mammalian and insect pathogens, such as B. anthracis, the anthrax bacterium, B. thuringiensis, used as a biological pesticide and B. cereus, often involved in food poisoning incidents.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Therefore, we have developed a database that compiles and integrates MLST data from all five schemes for the B. cereus group, accessible at http://mlstoslo.uio.no/. Supertree techniques were used to combine the phylogenetic information from analysis of all schemes and datasets, in order to produce an integrated view of the B. cereus group population.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Therefore, we have developed a database that compiles and integrates MLST data from all five schemes for the B. cereus group, accessible at http://mlstoslo.uio.no/. Supertree techniques were used to combine the phylogenetic information from analysis of all schemes and datasets, in order to produce an integrated view of the B. cereus group population.', answer the user's query. |
What is the biomedical concept corresponding to 'neisseria meningitidis'? | [
"micrococcus meningitidis (neisseria meningitidis)",
"neisseria meningitidis (micrococcus meningitidis cerebrospinalis)",
"micrococcus meningitidis cerebrospinalis (neisseria meningitidis)"
] | [
"neisseria meningitidis str. nmb (neisseria meningitidis nmb)",
"neisseria meningitidis (group b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis strain nmb (neisseria meningitidis nmb)",
"neisseria meningitidis (serogroup b) (neisseria meningitidis serogroup b)",
"neisseria meningitidis (ser... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus pneumoniae'? | [
"streptococcus pneumoniae (diplococcus pneumoniae)",
"micrococcus pneumoniae (streptococcus pneumoniae)",
"diplococcus pneumoniae (streptococcus pneumoniae)"
] | [
"streptococcus pneumoniae strain ccri 1974 (streptococcus pneumoniae ccri 1974)",
"streptococcus pneumoniae ccri 1974 (streptococcus pneumoniae strain ccri 1974)",
"streptococcus pneumoniae strain atcc 700669 (streptococcus pneumoniae atcc 700669)",
"streptococcus parasuis",
"streptococcus",
"streptococcu... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus pyogenes'? | [
"streptococcus hemolyticus (streptococcus pyogenes)",
"streptococcus pyogenes (streptococcus erysipelatos)",
"streptococcus erysipelatos (streptococcus pyogenes)",
"streptococcus scarlatinae (streptococcus pyogenes)"
] | [
"streptococcus suis",
"streptococcus parasuis",
"streptococcus",
"streptococcus infantis",
"micrococcus pyogenes (staphylococcus aureus)",
"streptococcus pasteuri ('streptococcus pasteuri')",
"'streptococcus pasteuri' (streptococcus pasteuri)",
"streptococcus sanguinis",
"streptococcus pasteurianus ... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'haemophilus influenzae'? | [
"bacterium influenzae (haemophilus influenzae)",
"influenza-bacillus (haemophilus influenzae)",
"haemophilus influenzae (haemophilus meningitidis)",
"mycobacterium influenzae (haemophilus influenzae)",
"haemophilus meningitidis (haemophilus influenzae)"
] | [
"haemophilus",
"haemophilus sp.",
"haemophilus taxon c (haemophilus sp. (strain taxon c))",
"haemophilus haemolyticus (bacillus x)",
"haemophilus sp. (strain taxon c) (haemophilus taxon c)",
"haemobacillus",
"haemophilus influenzaemurium (haemophilus influenzae-murium)",
"haemophilus parahaemolyticus"... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'staphylococcus aureus'? | [
"staphylococcus pyogenes aureus (staphylococcus aureus)",
"micrococcus aureus (staphylococcus aureus)",
"staphylococcus aureus (staphylococcus aureus subsp. anaerobius)",
"micrococcus pyogenes (staphylococcus aureus)"
] | [
"staphylococcus aureus subsp. aureus col (staphylococcus aureus col)",
"staphylococcus aureus col (staphylococcus aureus subsp. aureus col)",
"staphylococcus staphylolyticus (staphylococcus simulans bv. staphylolyticus)",
"staphylococcus sp. s",
"staphylococcus aureus usa_1",
"staphylococcus sp. i",
"st... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'campylobacter jejuni'? | [
"campylobacter jejuni (campylobacter fetus subsp. jejuni)",
"campylobacter fetus subsp. jejuni (campylobacter jejuni)",
"vibrio jejuni (campylobacter jejuni)"
] | [
"campylobacter jejuni jejuni (campylobacter jejuni subsp. jejuni)",
"campylobacter jejuni subsp. jejuni (campylobacter jejuni jejuni)",
"campylobacter jejuni subsp. jejuni 1798",
"campylobacter jejuni-like bacterium",
"campylobacter jejuni x",
"campylobacter jejuni subsp. jejuni 1854",
"campylobacter je... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'enterococcus faecium'? | [
"enterococcus faecium (streptococcus faecium)",
"streptococcus faecium (enterococcus faecium)"
] | [
"enterococcus faecium ef_aus0021",
"enterococcus faecium ef_aus0050",
"enterococcus faecium ef_aus0029",
"enterococcus faecium ef_aus0055",
"enterococcus faecium ef_aus0053",
"enterococcus faecium ef_aus0007",
"enterococcus faecium ef_aus0095",
"enterococcus faecium ef_aus0051",
"enterococcus faeciu... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'burkholderia pseudomallei'? | [
"pseudomonas pseudomallei (burkholderia pseudomallei)",
"bacillus pseudomallei (burkholderia pseudomallei)",
"malleomyces pseudomallei (burkholderia pseudomallei)",
"burkholderia pseudomallei (loefflerella pseudomallei)",
"loefflerella pseudomallei (burkholderia pseudomallei)",
"bacterium whitmori (burkho... | [
"burkholderia pseudomallei os (burkholderia pseudomallei strain os)",
"burkholderia pseudomallei cms (burkholderia pseudomallei strain cms)",
"burkholderia pseudomallei the (burkholderia pseudomallei strain the)",
"burkholderia pseudomallei cs (burkholderia pseudomallei strain cs)",
"burkholderia pseudomall... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"escherichia coli (escherichia/shigella coli)",
"enterococcus coli (escherichia coli)",
"escherichia/shigella coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia sp.",
"unspecified coliform bacterium",
"colimonas (candidatus colimonas)",
"escherichia coli 1a",
"escherichia coli c",
"colibacter",
"escherichia coli 9.1796",
"candidatus colimonas (colimonas)",
"enterobacteria (enterobacteriaceae)"
] | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica'? | [
"salmonella enterica (salmonella enterica ser. choleraesuis)",
"salmonella cholerae-suis (salmonella enterica)",
"salmonella choleraesuis (salmonella enterica)"
] | [
"salmonella",
"salmonella sp.",
"salmonella enterica serovar enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella enterica subsp. enterica serovar enteritidis (salmonella enterica serovar enter... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus subtilis group",
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"unclass... | Given the context 'Since the initial development of this technique for Neisseria meningitidis in 1998, MLST schemes have been developed for about 30 species including some of the most important bacterial pathogens, e.g. Streptococcus pneumoniae, Streptococcus pyogenes, Haemophilus influenzae, Staphylococcus aureus, Campylobacter jejuni, Enterococcus faecium, Burkholderia pseudomallei, Escherichia coli, Salmonella enterica and the Bacillus cereus group (see (1) for a recent review).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'anthrax'? | [
"anthrax (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)"
] | [
"anthrax",
"anthrenus",
"anthribola",
"anthrax anthrax (musca anthrax)",
"anthribus",
"anthrax subgroup",
"platypeza anthrax",
"lasiancistrus anthrax (pseudolithoxus anthrax)",
"unclassified anthrax",
"anthreptes"
] | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"cereus <sea anemones> (cereus)",
"bacillus cereus f (bacillus cereus strain f)",
"cereus <eudicots> (cereus)",
"bacillus cereus str. f (bacillus cereus f)",
"bacillus cereus strain f (bacillus cereus f)",
"bacillus cereus str. w (bacillu... | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"primate (primates)",
"hominoidea (apes (hominoidea))",
"hominidae (great apes)",
"ape (hominoidea) (hominoidea)",
"kingdom",
"apes (hominoidea) (hominoidea)",
"homininae (homo/pan/gorilla group)"
] | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus cereus var. thuringiensis (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. weihenstephanensis'? | [
"bacillus weihenstephanensis (bacillus mycoides)"
] | [
"pseudomonas weihenstephanensis",
"henneguya weishanensis",
"paenilisteria weihenstephanensis (listeria weihenstephanensis)",
"baccharis weirii",
"stegana weiqiuzhangi",
"steccherinum weishanense",
"cognatiluteimonas weifangensis (luteimonas weifangensis)",
"spongicoloides weijiaensis",
"listeria we... | Given the context 'The B. cereus group includes bacterial species that are of medical and/or economic importance, such as B. anthracis, an obligate mammalian pathogen causing the lethal disease anthrax, B. cereus, an opportunistic human pathogen involved in food-poisoning incidents and contaminations in hospitals, B. thuringiensis, an insect pathogen and one of the world's most widely used biopesticide and B. weihenstephanensis, a cold-tolerant species known for contaminating dairies.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Unlike other bacterial species that are typed using a single MLST scheme, five separate schemes have been developed for the B. cereus group, based on different sets of genes and isolates (5–10).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Studies with the various schemes have independently indicated that the B. cereus group population is divided into three main phylogenetic clusters and that species are usually intermixed within the groups.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'One cluster contains the monomorphic B. anthracis isolates and a number of B. cereus and B. thuringiensis strains, many of which are from clinical sources.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"cereus <sea anemones> (cereus)",
"bacillus cereus f (bacillus cereus strain f)",
"cereus <eudicots> (cereus)",
"bacillus cereus str. f (bacillus cereus f)",
"bacillus cereus strain f (bacillus cereus f)",
"bacillus cereus str. w (bacillu... | Given the context 'One cluster contains the monomorphic B. anthracis isolates and a number of B. cereus and B. thuringiensis strains, many of which are from clinical sources.', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus cereus var. thuringiensis (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'One cluster contains the monomorphic B. anthracis isolates and a number of B. cereus and B. thuringiensis strains, many of which are from clinical sources.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"cereus <sea anemones> (cereus)",
"bacillus cereus f (bacillus cereus strain f)",
"cereus <eudicots> (cereus)",
"bacillus cereus str. f (bacillus cereus f)",
"bacillus cereus strain f (bacillus cereus f)",
"bacillus cereus str. w (bacillu... | Given the context 'A second heterogeneous cluster includes B. cereus and B. thuringiensis isolates from various origins, while cold-tolerant B. weihenstephanensis and B. cereus isolates belong to the third group.', answer the user's query. |
What is the biomedical concept corresponding to 'b. thuringiensis'? | [
"bacillus cereus var. thuringiensis (bacillus thuringiensis)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)"
] | [
"bacillus thuringiensis gv. thuringiensis",
"bacillus thuringiensis var. thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis serovar thuringiensis (bacillus thuringiensis subsp. thuringien... | Given the context 'A second heterogeneous cluster includes B. cereus and B. thuringiensis isolates from various origins, while cold-tolerant B. weihenstephanensis and B. cereus isolates belong to the third group.', answer the user's query. |
What is the biomedical concept corresponding to 'b. weihenstephanensis'? | [
"bacillus weihenstephanensis (bacillus mycoides)"
] | [
"pseudomonas weihenstephanensis",
"henneguya weishanensis",
"paenilisteria weihenstephanensis (listeria weihenstephanensis)",
"baccharis weirii",
"stegana weiqiuzhangi",
"steccherinum weishanense",
"cognatiluteimonas weifangensis (luteimonas weifangensis)",
"spongicoloides weijiaensis",
"listeria we... | Given the context 'A second heterogeneous cluster includes B. cereus and B. thuringiensis isolates from various origins, while cold-tolerant B. weihenstephanensis and B. cereus isolates belong to the third group.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus'? | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus endorhythmos (bacillus cereus)"
] | [
"cereus (cereus <sea anemones>)",
"cereus (cereus <eudicots>)",
"cereus <sea anemones> (cereus)",
"bacillus cereus f (bacillus cereus strain f)",
"cereus <eudicots> (cereus)",
"bacillus cereus str. f (bacillus cereus f)",
"bacillus cereus strain f (bacillus cereus f)",
"bacillus cereus str. w (bacillu... | Given the context 'A second heterogeneous cluster includes B. cereus and B. thuringiensis isolates from various origins, while cold-tolerant B. weihenstephanensis and B. cereus isolates belong to the third group.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'The separate MLST analyses have also revealed that the B. cereus group population is weakly clonal overall due to numerous clinical and virulent isolates emerging from different phylogenetic positions (5–8,11–14), with the exception of the ‘cold-tolerant’ cluster that seems to exhibit a panmictic (or sexual) population structure, i.e. with frequent genetic exchanges between strains (9).
', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Here, in order to provide the B. cereus group research community with a common MLST resource, we have developed on the same website a database, SuperCAT, that compiles and integrates MLST data from all the published B. cereus group schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Here, in order to provide the B. cereus group research community with a common MLST resource, we have developed on the same website a database, SuperCAT, that compiles and integrates MLST data from all the published B. cereus group schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'In addition, we applied supertree reconstruction methods to build an integrated view of the B. cereus group population and phylogeny.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'The SuperCAT database provides information, sequence and phylogenetic data for all bacterial isolates that have been typed using any of the five published MLST schemes for the B. cereus group (Table 1).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'SuperCAT also contains the phylogenetic supertree of the B. cereus group reconstructed by combining the sequence data from all five schemes, as well as supertrees built for individual schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'In addition, sequences of all MLST loci were extracted from the complete genomes of the 21 sequenced B. cereus group strains available in Genbank.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Table 1.The five MLST schemes designed for typing bacteria of the B. cereus groupSchemeGenesTotal sequence length (bp)Total number of isolateseUsed in (references)Helgasonadk, ccpA, ftsA, glpT, pyre, recF and sucC2 938120(6,12,46)Candelon–Sorokina,cclpC, dinB, gdpD, panC, purF and yhfL2 850149(9,10)Kob,cgyrB, mbl, mdh, mutS, pycA(1) and rpoB2 00265(7)Priesta,bglpF, gmk, ilvD, pta, purH, pycA(2) and tpi2 829721(8,11,13–15,46–48)Tourasse–Helgasona,b,dadk, ccpA, glpF, glpT, panC, pta and pycA(2)2 658172(5)aSpecific databases for the Priest and Tourasse–Helgason schemes are accessible at http://pubmlst.org/bcereus/ and http://mlstoslo.uio.no/, respectively.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'A BLAST database for the Candelon–Sorokin scheme is available at http://spock.jouy.inra.fr/cgi-bin/bacilliMLSopen.cgi.bWhile the Tourasse–Helgason and Priest schemes use the same gene fragment for the pycA gene, the Ko scheme is based on a different and non-overlapping gene region.cThe B. cereus group-specific transcriptional regulator plcR was originally included in the Candelon–Sorokin and Ko schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'In this study, the 21 B. cereus group strains that have been completely sequenced, and for which the sequences at all 26 MLST loci are thus available, can be used to join all five schemes and provide the strain overlap necessary for supertree analysis.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'The global B. cereus group supertree, containing 1029 isolates, was reconstructed according to the widely used matrix representation by parsimony (MRP) procedure (Figure 1; (19,25,26)).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Figure 1.Schematic overview of the B. cereus group supertree reconstruction procedure using Matrix Representation by Parsimony (MRP).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'It should be noted that the global 1029-strain supertree retains the phylogenetic signals from the individual schemes and contains the three main clusters of the B. cereus group population described in the section ‘Introduction’.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'These 21 isolates cover all three clusters, although the majority of them are B. anthracis strains or clinical strains closely related to B. anthracis due to the focus of genome sequencing projects, making the part of the supertree containing these isolates likely to be more accurate than the rest of the tree.', answer the user's query. |
What is the biomedical concept corresponding to 'b. anthracis'? | [
"bacillus anthracis (bacillus cereus var. anthracis)",
"bacillus cereus var. anthracis (bacillus anthracis)",
"bacteridium anthracis (bacillus anthracis)",
"anthrax bacterium (bacillus anthracis)",
"anthrax (bacillus anthracis)"
] | [
"bacillus cereus biovar anthracis",
"bacillus anthracis ames (bacillus anthracis str. ames)",
"bacillus anthracis ames \"ancestor\" (bacillus anthracis str. 'ames ancestor')",
"bacillus anthracis (strain ames) (bacillus anthracis str. ames)",
"bacillus anthracis str. ames ancestor (bacillus anthracis str. '... | Given the context 'These 21 isolates cover all three clusters, although the majority of them are B. anthracis strains or clinical strains closely related to B. anthracis due to the focus of genome sequencing projects, making the part of the supertree containing these isolates likely to be more accurate than the rest of the tree.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Precise within-cluster groupings may contain more uncertainty, as indicated by the large number of unresolved multifurcations in the B. cereus group supertree.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'Apart from the basic functions for selecting and accessing strain information and sequence data for all five B. cereus group MLST schemes, the main features of SuperCAT relate to the manipulation of the supertrees constructed by the MRP approach.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'The global supertree based on the combination of all five B. cereus group MLST schemes as well as the five scheme-specific supertrees can be browsed according to various user-chosen criteria (Figure 2).', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'DISCUSSION AND FUTURE DEVELOPMENTS
SuperCAT is a newly created database devoted to the B. cereus group of bacteria whose main objectives are to provide a common MLST repository and means for building a comprehensive genetic analysis of the group that has been typed by five separate schemes.', answer the user's query. |
What is the biomedical concept corresponding to 'b. cereus group'? | [
"bacillus cereus group"
] | [
"bacillus cereus group sp.",
"cereus (cereus <eudicots>)",
"cereus (cereus <sea anemones>)",
"cereus <eudicots> (cereus)",
"cereus <sea anemones> (cereus)",
"unclassified bacillus cereus group",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus fr... | Given the context 'In particular, a new improved method has recently been developed for taking into account both nucleotide substitutions and recombination events in phylogenies, as part of the ClonalFrame software, which has been applied to the B. cereus group and the Priest scheme (38).', answer the user's query. |
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