query stringlengths 53 100 | positive listlengths 1 5 | negative listlengths 1 4 | system stringlengths 68 790 |
|---|---|---|---|
What is the biomedical concept corresponding to 'saccharomyces cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"saccharomyces italicus (saccharo... | [
"saccharomyces globosus (saccharomyces uvarum)",
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces albicans (candida albicans)",
"saccharomyces hansenii (debaryomyces hansenii)"
] | Given the context 'The human adenovirus E4orf4 protein is toxic in both human tumor cells and Saccharomyces cerevisiae.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"baker's yeast (saccharomyces cerevisiae)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces hansenii (debaryomyces hansenii)",
"saccharomyces albicans (candida albicans)",
"saccharomyces globosus (saccharomyces uvarum)"
] | Given the context 'Previous studies indicated that most of this toxicity is dependent on an interaction of E4orf4 protein with the B55 class of regulatory subunits of protein phosphatase 2A (PP2A) and in yeast with the B55 homolog Cdc55.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"baker's yeast (saccharomyces cerevisiae)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces hansenii (debaryomyces hansenii)",
"saccharomyces albicans (candida albicans)",
"saccharomyces globosus (saccharomyces uvarum)"
] | Given the context 'In both cases, amino-terminal polypeptides composed only of blade 1 and at least part of blade 2 were found to bind E4orf4 and overexpression blocked E4orf4 toxicity in yeast.', answer the user's query. |
What is the biomedical concept corresponding to 'giant australian cuttlefish'? | [
"giant australian cuttlefish (ascarosepion apama)"
] | [
"sydney crayfish (euastacus australasiensis)",
"threadfin butterflyfish (chaetodon auriga)",
"giant wrymouth (cryptacanthodes giganteus)",
"broad-fingered crayfish (astacus astacus)"
] | Given the context 'Accelerometry estimates field metabolic rate in giant Australian cuttlefish Sepia apama during breeding.
', answer the user's query. |
What is the biomedical concept corresponding to 'sepia apama'? | [
"sepia apama (ascarosepion apama)"
] | [
"sepiana sepium",
"amanita sepiacea",
"adesmia monosperma",
"austroclima sepia"
] | Given the context 'Accelerometry estimates field metabolic rate in giant Australian cuttlefish Sepia apama during breeding.
', answer the user's query. |
What is the biomedical concept corresponding to 'giant australian cuttlefish'? | [
"giant australian cuttlefish (ascarosepion apama)"
] | [
"sydney crayfish (euastacus australasiensis)",
"threadfin butterflyfish (chaetodon auriga)",
"giant wrymouth (cryptacanthodes giganteus)",
"broad-fingered crayfish (astacus astacus)"
] | Given the context 'We combined two-dimensional accelerometry and swim-tunnel respirometry to estimate patterns of energy expenditure in giant Australian cuttlefish Sepia apama during breeding.', answer the user's query. |
What is the biomedical concept corresponding to 'sepia apama'? | [
"sepia apama (ascarosepion apama)"
] | [
"sepiana sepium",
"amanita sepiacea",
"adesmia monosperma",
"austroclima sepia"
] | Given the context 'We combined two-dimensional accelerometry and swim-tunnel respirometry to estimate patterns of energy expenditure in giant Australian cuttlefish Sepia apama during breeding.', answer the user's query. |
What is the biomedical concept corresponding to 'rainbowfish'? | [
"western rainbowfish (melanotaenia australis)"
] | [
"rainbow trout (oncorhynchus mykiss)",
"saitis rainbowi (maratus rainbowi)",
"maratus rainbowi (saitis rainbowi)",
"rainbow smelt (osmerus mordax)"
] | Given the context 'Predation is associated with variation in colour pattern, but not body shape or colour reflectance, in a rainbowfish (Melanotaenia australis).
', answer the user's query. |
What is the biomedical concept corresponding to 'melanotaenia australis'? | [
"melanotaenia australis (melanotaenia australis australis)",
"melanotaenia australis australis (melanotaenia australis)",
"melanotaenia splendida australis (melanotaenia australis)",
"neoatherina australis (melanotaenia australis)"
] | [
"martensia australis",
"melania australis (thiara australis)",
"metzgeria australis",
"monardella australis"
] | Given the context 'Predation is associated with variation in colour pattern, but not body shape or colour reflectance, in a rainbowfish (Melanotaenia australis).
', answer the user's query. |
What is the biomedical concept corresponding to 'western rainbowfish'? | [
"western rainbowfish (melanotaenia australis)"
] | [
"rainbow trout (oncorhynchus mykiss)",
"eastern rainbowfish (melanotaenia splendida)",
"spotted rainbowfish (glossolepis maculosus)",
"eastern rainbow fish (melanotaenia splendida)"
] | Given the context 'The western rainbowfish Melanotaenia australis exhibits marked sexual dimorphism - females are plain with a slender body, while males have striking coloration and are deeper in the body.', answer the user's query. |
What is the biomedical concept corresponding to 'melanotaenia australis'? | [
"melanotaenia australis (melanotaenia australis australis)",
"melanotaenia australis australis (melanotaenia australis)",
"melanotaenia splendida australis (melanotaenia australis)",
"neoatherina australis (melanotaenia australis)"
] | [
"martensia australis",
"melania australis (thiara australis)",
"metzgeria australis",
"monardella australis"
] | Given the context 'The western rainbowfish Melanotaenia australis exhibits marked sexual dimorphism - females are plain with a slender body, while males have striking coloration and are deeper in the body.', answer the user's query. |
What is the biomedical concept corresponding to 'perigord black truffle'? | [
"perigord truffle (tuber melanosporum)",
"black truffle (tuber melanosporum)",
"french truffle (tuber melanosporum)"
] | [
"red-grained black truffle (tuber aestivum)",
"chinese black truffle (tuber himalayense)",
"polytrichum perigoniale",
"tuber aestivum (red-grained black truffle)"
] | Given the context 'Distribution and localization of microsatellites in the Perigord black truffle genome and identification of new molecular markers.
', answer the user's query. |
What is the biomedical concept corresponding to 'perigord black truffle'? | [
"perigord truffle (tuber melanosporum)",
"black truffle (tuber melanosporum)",
"french truffle (tuber melanosporum)"
] | [
"red-grained black truffle (tuber aestivum)",
"chinese black truffle (tuber himalayense)",
"polytrichum perigoniale",
"tuber aestivum (red-grained black truffle)"
] | Given the context 'The level of genetic diversity and genetic structure in the Perigord black truffle (Tuber melanosporum Vittad.) has been debated for several years, mainly due to the lack of appropriate genetic markers.', answer the user's query. |
What is the biomedical concept corresponding to 'tuber melanosporum vittad.'? | [
"tuber melanosporum (perigord truffle)",
"black truffle (tuber melanosporum)",
"french truffle (tuber melanosporum)",
"perigord truffle (tuber melanosporum)"
] | [
"tuber melosporum (picoa melospora)",
"tuber melanorufum",
"tuber polymorphosporum",
"picoa melospora (tuber melosporum)"
] | Given the context 'The level of genetic diversity and genetic structure in the Perigord black truffle (Tuber melanosporum Vittad.) has been debated for several years, mainly due to the lack of appropriate genetic markers.', answer the user's query. |
What is the biomedical concept corresponding to 't. melanosporum'? | [
"tuber melanosporum (perigord truffle)",
"french truffle (tuber melanosporum)",
"black truffle (tuber melanosporum)",
"perigord truffle (tuber melanosporum)"
] | [
"secotium melanosporum (agaricus melanosporus)",
"glomus melanosporum",
"trichoderma album",
"trichosporon oryzae (moesziomyces antarcticus)"
] | Given the context 'In this study, we surveyed the T. melanosporum genome (1) to characterise its SSR pattern; (2) to compare it with SSR patterns found in 48 other fungal and three oomycetes genomes and (3) to identify new polymorphic SSR markers for population genetics.', answer the user's query. |
What is the biomedical concept corresponding to 't. melanosporum'? | [
"tuber melanosporum (perigord truffle)",
"french truffle (tuber melanosporum)",
"black truffle (tuber melanosporum)",
"perigord truffle (tuber melanosporum)"
] | [
"secotium melanosporum (agaricus melanosporus)",
"glomus melanosporum",
"trichoderma album",
"trichosporon oryzae (moesziomyces antarcticus)"
] | Given the context 'The T. melanosporum genome is rich in SSRs with 22,425 SSRs with mono-nucleotides being the most frequent motifs.', answer the user's query. |
What is the biomedical concept corresponding to 'black truffle'? | [
"black truffle (tuber melanosporum)",
"french truffle (tuber melanosporum)",
"perigord truffle (tuber melanosporum)"
] | [
"red-grained black truffle (tuber aestivum)",
"white truffle (tuber magnatum)",
"chinese black truffle (tuber himalayense)",
"summer truffle (tuber aestivum)"
] | Given the context 'Sixty out of 135 PCR-amplified mono-, di-, tri-, tetra, penta, and hexa-nucleotides were polymorphic (44%) within black truffle populations and 27 were randomly selected and analysed on 139 T. melanosporum isolates from France, Italy and Spain.', answer the user's query. |
What is the biomedical concept corresponding to 't. melanosporum'? | [
"tuber melanosporum (perigord truffle)",
"french truffle (tuber melanosporum)",
"black truffle (tuber melanosporum)",
"perigord truffle (tuber melanosporum)"
] | [
"secotium melanosporum (agaricus melanosporus)",
"glomus melanosporum",
"trichoderma album",
"trichosporon oryzae (moesziomyces antarcticus)"
] | Given the context 'Sixty out of 135 PCR-amplified mono-, di-, tri-, tetra, penta, and hexa-nucleotides were polymorphic (44%) within black truffle populations and 27 were randomly selected and analysed on 139 T. melanosporum isolates from France, Italy and Spain.', answer the user's query. |
What is the biomedical concept corresponding to 't. melanosporum'? | [
"tuber melanosporum (perigord truffle)",
"french truffle (tuber melanosporum)",
"black truffle (tuber melanosporum)",
"perigord truffle (tuber melanosporum)"
] | [
"secotium melanosporum (agaricus melanosporus)",
"glomus melanosporum",
"trichoderma album",
"trichosporon oryzae (moesziomyces antarcticus)"
] | Given the context 'One hundred and thirty-two different multilocus genotypes out of the 139 T. melanosporum isolates were identified and the genotypic diversity was high (0.999).', answer the user's query. |
What is the biomedical concept corresponding to 't. melanosporum'? | [
"tuber melanosporum (perigord truffle)",
"french truffle (tuber melanosporum)",
"black truffle (tuber melanosporum)",
"perigord truffle (tuber melanosporum)"
] | [
"secotium melanosporum (agaricus melanosporus)",
"glomus melanosporum",
"trichoderma album",
"trichosporon oryzae (moesziomyces antarcticus)"
] | Given the context 'In conclusion, SSRs developed in this study were highly polymorphic and our results showed that T. melanosporum is a species with an important genetic diversity, which is in agreement with its recently uncovered heterothallic mating system.
', answer the user's query. |
What is the biomedical concept corresponding to 'vorticella infusionum'? | [
"vorticella infusionum (vorticellides infusionum)",
"vorticellides infusionum (vorticella infusionum)"
] | [
"salpingoeca infusionum",
"vorticella gracilis",
"tokophrya infusionum",
"vorticella striata"
] | Given the context 'It was shown that a more sensitive indicator of effluent quality was a change in the abundance of attached ciliates with a narrow peristome (Vorticella infusionum and Opercularia coarctata), small flagellates and crawling ciliates (Acineria uncinata) feeding on flagellates.
', answer the user's query. |
What is the biomedical concept corresponding to 'erwinia amylovora'? | [
"bacillus amylovorus (erwinia amylovora)",
"bacterium amylovorus (erwinia amylovora)",
"erwinia amylovora (micrococcus amylovorus)",
"micrococcus amylovorus (erwinia amylovora)"
] | [
"erwinia horticola",
"erwinia aphidicola",
"erwinia oleae",
"erwinia"
] | Given the context 'Complete genome sequences of three Erwinia amylovora phages isolated in north america and a bacteriophage induced from an Erwinia tasmaniensis strain.
', answer the user's query. |
What is the biomedical concept corresponding to 'erwinia tasmaniensis'? | [
"erwinia tasmaniensis"
] | [
"erwinia horticola",
"erwinia aeris",
"erwinia aphidicola",
"erwinia"
] | Given the context 'Complete genome sequences of three Erwinia amylovora phages isolated in north america and a bacteriophage induced from an Erwinia tasmaniensis strain.
', answer the user's query. |
What is the biomedical concept corresponding to 'erwinia amylovora'? | [
"bacillus amylovorus (erwinia amylovora)",
"bacterium amylovorus (erwinia amylovora)",
"erwinia amylovora (micrococcus amylovorus)",
"micrococcus amylovorus (erwinia amylovora)"
] | [
"erwinia horticola",
"erwinia aphidicola",
"erwinia oleae",
"erwinia"
] | Given the context 'Fire blight, a plant disease of economic importance caused by Erwinia amylovora, may be controlled by the application of bacteriophages.', answer the user's query. |
What is the biomedical concept corresponding to 'e. amylovora'? | [
"bacterium amylovorus (erwinia amylovora)",
"bacillus amylovorus (erwinia amylovora)",
"erwinia amylovora (micrococcus amylovorus)",
"micrococcus amylovorus (erwinia amylovora)"
] | [
"erwinia amylovora mr1",
"treponema amylovorum",
"erwinia oleae",
"erwinia amylovora 692"
] | Given the context 'Here, we provide the complete genome sequences and the annotation of three E. amylovora-specific phages isolated in North America and genomic information about a bacteriophage induced by mitomycin C treatment of an Erwinia tasmaniensis strain that is antagonistic for E. amylovora.', answer the user's query. |
What is the biomedical concept corresponding to 'erwinia tasmaniensis'? | [
"erwinia tasmaniensis"
] | [
"erwinia horticola",
"erwinia aeris",
"erwinia aphidicola",
"erwinia"
] | Given the context 'Here, we provide the complete genome sequences and the annotation of three E. amylovora-specific phages isolated in North America and genomic information about a bacteriophage induced by mitomycin C treatment of an Erwinia tasmaniensis strain that is antagonistic for E. amylovora.', answer the user's query. |
What is the biomedical concept corresponding to 'e. amylovora'? | [
"bacterium amylovorus (erwinia amylovora)",
"bacillus amylovorus (erwinia amylovora)",
"erwinia amylovora (micrococcus amylovorus)",
"micrococcus amylovorus (erwinia amylovora)"
] | [
"erwinia amylovora mr1",
"treponema amylovorum",
"erwinia oleae",
"erwinia amylovora 692"
] | Given the context 'Here, we provide the complete genome sequences and the annotation of three E. amylovora-specific phages isolated in North America and genomic information about a bacteriophage induced by mitomycin C treatment of an Erwinia tasmaniensis strain that is antagonistic for E. amylovora.', answer the user's query. |
What is the biomedical concept corresponding to 'e. tasmaniensis'? | [
"erwinia tasmaniensis"
] | [
"telopathes tasmaniensis",
"epermenia tasmanica",
"echinamoeba thermarum",
"epilobium tasmanicum"
] | Given the context 'The American phages resemble two already-described viral genomes, whereas the E. tasmaniensis phage displays a singular genomic sequence in BLAST searches.
', answer the user's query. |
What is the biomedical concept corresponding to 'trichosurus vulpecula'? | [
"trichosurus vulpecula (silver-gray brushtail possum)",
"common brush-tailed possum (trichosurus vulpecula)",
"didelphis vulpecula (trichosurus vulpecula)",
"common brushtail (trichosurus vulpecula)",
"silver-gray brushtail possum (trichosurus vulpecula)"
] | [
"trichotichnus vulpeculus",
"trichiotinus texanus",
"trichius sexualis",
"maratus vultus"
] | Given the context 'Maternal influence on philopatry and space use by juvenile brushtail possums (Trichosurus vulpecula).
', answer the user's query. |
What is the biomedical concept corresponding to 'prasinoderma coloniale'? | [
"prasinoderma coloniale (prasinoderma colonialis)",
"prasinoderma colonialis (prasinoderma coloniale)"
] | [
"monocoryne colonialis",
"paramonosiga coloniensis",
"porites colonensis",
"pleroma martiale (tibouchina martialis)"
] | Given the context 'Of these, nine strains composed a group for which the partial 18S rRNA gene sequence was related to Prasinoderma coloniale.', answer the user's query. |
What is the biomedical concept corresponding to 'p. coloniale'? | [
"prasinoderma coloniale (prasinoderma colonialis)",
"prasinoderma colonialis (prasinoderma coloniale)"
] | [
"plasmodium polare",
"plasmodium gallinaceum",
"paramonodictys paeoniae",
"paramonosiga coloniensis"
] | Given the context 'The ultrastructure, morphology, division process, pigment composition, genome size and molecular genetic phylogeny of these nine strains were investigated, using P. coloniale as a reference.', answer the user's query. |
What is the biomedical concept corresponding to 'p. coloniale'? | [
"prasinoderma coloniale (prasinoderma colonialis)",
"prasinoderma colonialis (prasinoderma coloniale)"
] | [
"plasmodium polare",
"plasmodium gallinaceum",
"paramonodictys paeoniae",
"paramonosiga coloniensis"
] | Given the context 'nov. shares only 96.9% of identity with that of P. coloniale and contains a conserved insertion of 567bp length not recorded in P. coloniale.', answer the user's query. |
What is the biomedical concept corresponding to 'p. coloniale'? | [
"prasinoderma coloniale (prasinoderma colonialis)",
"prasinoderma colonialis (prasinoderma coloniale)"
] | [
"plasmodium polare",
"plasmodium gallinaceum",
"paramonodictys paeoniae",
"paramonosiga coloniensis"
] | Given the context 'nov. shares only 96.9% of identity with that of P. coloniale and contains a conserved insertion of 567bp length not recorded in P. coloniale.', answer the user's query. |
What is the biomedical concept corresponding to 'p. coloniale'? | [
"prasinoderma coloniale (prasinoderma colonialis)",
"prasinoderma colonialis (prasinoderma coloniale)"
] | [
"plasmodium polare",
"plasmodium gallinaceum",
"paramonodictys paeoniae",
"paramonosiga coloniensis"
] | Given the context 'When compared to P. coloniale, P. singularis sp.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus sanguinis'? | [
"streptococcus sanguinis"
] | [
"streptococcus suis",
"bacillus sanguinis",
"streptococcus bovis (streptococcus equinus)",
"streptococcus parasuis"
] | Given the context 'Catabolite control protein A controls hydrogen peroxide production and cell death in Streptococcus sanguinis.
Streptococcus sanguinis is a commensal oral bacterium producing hydrogen peroxide (H2O2) that is dependent on pyruvate oxidase (Spx) activity.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus sanguinis'? | [
"streptococcus sanguinis"
] | [
"streptococcus suis",
"bacillus sanguinis",
"streptococcus bovis (streptococcus equinus)",
"streptococcus parasuis"
] | Given the context 'Catabolite control protein A controls hydrogen peroxide production and cell death in Streptococcus sanguinis.
Streptococcus sanguinis is a commensal oral bacterium producing hydrogen peroxide (H2O2) that is dependent on pyruvate oxidase (Spx) activity.', answer the user's query. |
What is the biomedical concept corresponding to 's. sanguinis'? | [
"streptococcus sanguinis"
] | [
"bacillus sanguinis",
"streptococcus suis",
"sphingomonas sanguinis",
"streptococcus mutans"
] | Given the context 'In addition to its well-known role in bacterial antagonism during interspecies competition, H2O2 causes cell death in about 10% of the S. sanguinis population.', answer the user's query. |
What is the biomedical concept corresponding to 's. sanguinis'? | [
"streptococcus sanguinis"
] | [
"bacillus sanguinis",
"streptococcus suis",
"sphingomonas sanguinis",
"streptococcus mutans"
] | Given the context 'Since H2O2 is directly involved in the release of eDNA and bacterial cell death, the presented data suggest that CcpA is a central control element in this important developmental process in S. sanguinis.
', answer the user's query. |
What is the biomedical concept corresponding to 'saccharophagus degradans 2-40'? | [
"saccharophagus degradans (microbulbifer degradans)",
"microbulbifer degradans (saccharophagus degradans)"
] | [
"saccharophagus degradans 2-40 (saccharophagus degradans strain 2-40)",
"saccharophagus degradans strain 2-40 (saccharophagus degradans 2-40)",
"saccharophagus degradans atcc 43961 (saccharophagus degradans 2-40)",
"bacterium 2-40 (saccharophagus degradans 2-40)"
] | Given the context 'Cadherin domains in the polysaccharide-degrading marine bacterium Saccharophagus degradans 2-40 are carbohydrate-binding modules.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)",
"bacillus uniflagellatus (bacillus subtilis)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus aerophilus"
] | Given the context 'Regulation of horizontal gene transfer in Bacillus subtilis by activation of a conserved site-specific protease.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)",
"bacillus uniflagellatus (bacillus subtilis)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus aerophilus"
] | Given the context 'The mobile genetic element ICEBs1 is an integrative and conjugative element (a conjugative transposon) found in Bacillus subtilis.', answer the user's query. |
What is the biomedical concept corresponding to 'synechocystis sp. strain pcc6803'? | [
"synechocystis sp. atcc 27184 (synechocystis sp. pcc 6803)",
"synechocystis sp. pcc 6803 (synechocystis sp. (strain pcc 6803))",
"synechocystis sp. (atcc 27184) (synechocystis sp. pcc 6803)"
] | [
"synechocystis sp. pcc 7338",
"synechocystis sp. pcc 7339",
"synechocystis sp. pcc 6805 (synechocystis sp. atcc 27186)",
"synechococcus sp. ps683"
] | Given the context 'Distinct roles of multiple NDH-1 complexes in the cyanobacterial electron transport network as revealed by kinetic analysis of P700+ reduction in various Ndh-deficient mutants of Synechocystis sp. strain PCC6803.
', answer the user's query. |
What is the biomedical concept corresponding to 'synechocystis sp. strain pcc6803'? | [
"synechocystis sp. atcc 27184 (synechocystis sp. pcc 6803)",
"synechocystis sp. pcc 6803 (synechocystis sp. (strain pcc 6803))",
"synechocystis sp. (atcc 27184) (synechocystis sp. pcc 6803)"
] | [
"synechocystis sp. pcc 7338",
"synechocystis sp. pcc 7339",
"synechocystis sp. pcc 6805 (synechocystis sp. atcc 27186)",
"synechococcus sp. ps683"
] | Given the context 'While methyl viologen had only a small effect on P700(+) rereduction kinetics after far-red pulses in KCN-treated wild-type Synechocystis sp. strain PCC6803 and an NdhF3/NdhF4 (NdhF3/F4)-defective mutant, it involved a rather slow P700(+) rereduction in an NdhF1-defective mutant.', answer the user's query. |
What is the biomedical concept corresponding to 'parvularcula bermudensis'? | [
"parvularcula bermudensis"
] | [
"pontodrilus bermudensis",
"proporus bermudensis",
"loimia bermudensis",
"parougia bermudensis (dorvillea bermudensis)"
] | Given the context 'Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order Parvularculales in the class Alphaproteobacteria.
', answer the user's query. |
What is the biomedical concept corresponding to 'parvularcula bermudensis'? | [
"parvularcula bermudensis"
] | [
"pontodrilus bermudensis",
"proporus bermudensis",
"loimia bermudensis",
"parougia bermudensis (dorvillea bermudensis)"
] | Given the context 'Parvularcula bermudensis, the type species of the order, was isolated from the Sargasso Sea using dilution-to-extinction culturing.', answer the user's query. |
What is the biomedical concept corresponding to 'parvularcula bermudensis htcc2503(t)'? | [
"parvularcula bermudensis"
] | [
"parapallene bermudensis",
"pontodrilus bermudensis",
"periclimenes bermudensis (holthuisaeus bermudensis)",
"parougia bermudensis (dorvillea bermudensis)"
] | Given the context 'We present here the complete genome sequence of Parvularcula bermudensis HTCC2503(T), which contains genes for carotenoid biosynthesis, dimethylsulfoniopropionate demethylase, and transduction-like gene transfer agents.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)",
"bacillus uniflagellatus (bacillus subtilis)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus aerophilus"
] | Given the context 'A small protein required for the switch from {sigma}F to {sigma}G during sporulation in Bacillus subtilis.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)",
"bacillus uniflagellatus (bacillus subtilis)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus aerophilus"
] | Given the context 'A cascade of alternative sigma factors governs the program of developmental gene expression during sporulation in Bacillus subtilis.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'SecA is the ATPase that acts as the motor for protein export in the general secretory, or Sec, system of Escherichia coli.', answer the user's query. |
What is the biomedical concept corresponding to 'corynebacterium pseudotuberculosis i19'? | [
"corynebacterium ovis (corynebacterium pseudotuberculosis)",
"bacillus pseudotuberculosis (corynebacterium pseudotuberculosis)",
"corynebacterium pseudotuberculosis (corynebacterium pseudotuberculosis-ovis)",
"corynebacterium pseudotuberculosis-ovis (corynebacterium pseudotuberculosis)",
"bacillus pseudotub... | [
"corynebacterium bovis",
"corynebacterium canis",
"corynebacterium pseudotuberculosis strain i19 (corynebacterium pseudotuberculosis i19)",
"corynebacterium gallinarum"
] | Given the context 'Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.
', answer the user's query. |
What is the biomedical concept corresponding to 'cow'? | [
"domestic cow (bos taurus)",
"cow (bos taurus) (bos taurus)",
"dairy cow (bos taurus)",
"bos bovis (bos taurus)",
"domestic cattle (bos taurus)"
] | [
"cattle (bos)",
"bos (cattle)",
"domestic yak (bos grunniens)",
"ruminococcus bovis"
] | Given the context 'Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.
', answer the user's query. |
What is the biomedical concept corresponding to 'corynebacterium pseudotuberculosis i19'? | [
"corynebacterium ovis (corynebacterium pseudotuberculosis)",
"bacillus pseudotuberculosis (corynebacterium pseudotuberculosis)",
"corynebacterium pseudotuberculosis (corynebacterium pseudotuberculosis-ovis)",
"corynebacterium pseudotuberculosis-ovis (corynebacterium pseudotuberculosis)",
"bacillus pseudotub... | [
"corynebacterium bovis",
"corynebacterium canis",
"corynebacterium pseudotuberculosis strain i19 (corynebacterium pseudotuberculosis i19)",
"corynebacterium gallinarum"
] | Given the context 'This work reports the completion and annotation of the genome sequence of Corynebacterium pseudotuberculosis I19, isolated from an Israeli dairy cow with severe clinical mastitis.', answer the user's query. |
What is the biomedical concept corresponding to 'cow'? | [
"domestic cow (bos taurus)",
"cow (bos taurus) (bos taurus)",
"dairy cow (bos taurus)",
"bos bovis (bos taurus)",
"domestic cattle (bos taurus)"
] | [
"cattle (bos)",
"bos (cattle)",
"domestic yak (bos grunniens)",
"ruminococcus bovis"
] | Given the context 'This work reports the completion and annotation of the genome sequence of Corynebacterium pseudotuberculosis I19, isolated from an Israeli dairy cow with severe clinical mastitis.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'X-ray structure and site-directed mutagenesis analysis of the Escherichia coli colicin M immunity protein.
', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'Colicin M (ColM), which is produced by some Escherichia coli strains to kill competitor strains from the same or related species, was recently shown to inhibit cell wall peptidoglycan biosynthesis through enzymatic degradation of its lipid II precursor.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica.
', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica'? | [
"salmonella choleraesuis (salmonella enterica)",
"salmonella cholerae-suis (salmonella enterica)",
"salmonella enterica (salmonella enterica ser. choleraesuis)"
] | [
"salmonella",
"salmonella enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella typhimurium (salmonella enterica subsp. enterica serovar typhimurium)",
"salmonella typhi (salmonella enterica subsp. enterica serovar typhi)"
] | Given the context 'Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica.
', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'The Escherichia coli rluD gene encodes a pseudouridine synthase responsible for the pseudouridine (Psi) modifications at positions 1911, 1915, and 1917 in helix 69 of 23S rRNA.', answer the user's query. |
What is the biomedical concept corresponding to 'k-12 strains of e. coli'? | [
"e. coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia coli k12 (escherichia coli k-12)",
"escherichia coli k-12 (escherichia coli k12)",
"escherichia coli k1",
"'escherichia faecalis' (escherichia faecalis)"
] | Given the context 'It has been reported that deletion of rluD in K-12 strains of E. coli is associated with extremely slow growth, increased readthrough of stop codons, and defects in 50S ribosomal subunit assembly and 30S-50S subunit association.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli k-12'? | [
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia coli k12 (escherichia coli k-12)",
"escherichia coli k-12 (escherichia coli k12)",
"escherichia coli k1",
"escherichia coli 9.1796"
] | Given the context 'However, further genetic analysis reported here also reveals that the slow growth and other defects associated with inactivation of rluD in E. coli K-12 strains are due to a defective RF2 protein, with a threonine at position 246, which is present in all K-12 strains.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"entamoeba coli",
"'escherichia faecalis' (escherichia faecalis)"
] | Given the context 'This is in contrast to the more typical alanine found at this position in most bacterial RF2s, including those of other E. coli strains.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"entamoeba coli",
"'escherichia faecalis' (escherichia faecalis)"
] | Given the context 'Inactivation of rluD in E. coli strains containing the prfB allele from E. coli B or in Salmonella enterica, both carrying an RF2 with Ala246, has negligible effects on growth, termination, or ribosome function.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli b'? | [
"bacillus coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia coli b (escherichia coli (strain b))",
"escherichia coli (strain b) (escherichia coli b)",
"escherichia coli c",
"escherichia faecalis ('escherichia faecalis')"
] | Given the context 'Inactivation of rluD in E. coli strains containing the prfB allele from E. coli B or in Salmonella enterica, both carrying an RF2 with Ala246, has negligible effects on growth, termination, or ribosome function.', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica'? | [
"salmonella choleraesuis (salmonella enterica)",
"salmonella cholerae-suis (salmonella enterica)",
"salmonella enterica (salmonella enterica ser. choleraesuis)"
] | [
"salmonella",
"salmonella enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella typhimurium (salmonella enterica subsp. enterica serovar typhimurium)",
"salmonella typhi (salmonella enterica subsp. enterica serovar typhi)"
] | Given the context 'Inactivation of rluD in E. coli strains containing the prfB allele from E. coli B or in Salmonella enterica, both carrying an RF2 with Ala246, has negligible effects on growth, termination, or ribosome function.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli k-12'? | [
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia coli k12 (escherichia coli k-12)",
"escherichia coli k-12 (escherichia coli k12)",
"escherichia coli k1",
"escherichia coli 9.1796"
] | Given the context 'The results indicate that, in contrast to those in wild bacteria, termination functions in E. coli K-12 strains carrying a partially defective RF2 protein are especially susceptible to perturbation of ribosome-RF interactions, such as that caused by loss of h69 Psi modifications.
', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica'? | [
"salmonella choleraesuis (salmonella enterica)",
"salmonella cholerae-suis (salmonella enterica)",
"salmonella enterica (salmonella enterica ser. choleraesuis)"
] | [
"salmonella",
"salmonella enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella typhimurium (salmonella enterica subsp. enterica serovar typhimurium)",
"salmonella typhi (salmonella enterica subsp. enterica serovar typhi)"
] | Given the context 'Fur negatively regulates hns and is required for the expression of HilA and virulence in Salmonella enterica serovar Typhimurium.
', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica'? | [
"salmonella choleraesuis (salmonella enterica)",
"salmonella cholerae-suis (salmonella enterica)",
"salmonella enterica (salmonella enterica ser. choleraesuis)"
] | [
"salmonella",
"salmonella enteritidis (salmonella enterica subsp. enterica serovar enteritidis)",
"salmonella typhimurium (salmonella enterica subsp. enterica serovar typhimurium)",
"salmonella typhi (salmonella enterica subsp. enterica serovar typhi)"
] | Given the context 'We report here that Fur is required for virulence in Salmonella enterica serovar Typhimurium and that Fur is required for the activation of hilA, as well as of other HilA-dependent genes, invF and sipC. The Fur-dependent regulation of hilA was independent of PhoP, a known repressor of hilA. Instead, the expression of the gene coding for the histone-like protein, hns, was significantly derepressed in the fur mutant.', answer the user's query. |
What is the biomedical concept corresponding to 'sinorhizobium meliloti'? | [
"sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (sinorhizobium meliloti)",
"rhizobium meliloti (sinorhizobium meliloti)",
"ensifer meliloti (sinorhizobium meliloti)",
"sinorhizobium meliloti (sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994)"
] | [
"sinorhizobium medicae (sinorhizobium medicae rome et al. 1996)",
"sinorhizobium meliloti usda 1021",
"ensifer medicae (sinorhizobium medicae)",
"sinorhizobium meliloti m10"
] | Given the context 'argC Orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti.
', answer the user's query. |
What is the biomedical concept corresponding to 'sinorhizobium meliloti'? | [
"sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (sinorhizobium meliloti)",
"rhizobium meliloti (sinorhizobium meliloti)",
"ensifer meliloti (sinorhizobium meliloti)",
"sinorhizobium meliloti (sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994)"
] | [
"sinorhizobium medicae (sinorhizobium medicae rome et al. 1996)",
"sinorhizobium meliloti usda 1021",
"ensifer medicae (sinorhizobium medicae)",
"sinorhizobium meliloti m10"
] | Given the context 'We evaluated the transcriptional expression and metabolic performance of ortholog substitution complementing a Sinorhizobium meliloti argC mutant with argC from Rhizobiales (Agrobacterium tumefaciens, Rhizobium etli, and Mesorhizobium loti).', answer the user's query. |
What is the biomedical concept corresponding to 'agrobacterium tumefaciens'? | [
"agrobacterium tumefaciens (agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980))",
"agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980) (agrobacterium tumefaciens)",
"pseudomonas tumefaciens (agrobacterium tumefaciens)",
"agrobacterium fabacearum... | [
"agrobacterium leguminum",
"agrobacterium radiobacter (agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980))",
"agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980) (rhizobium rhizogenes)",
"agrobacterium radiobacter (beijerinck and van delden 1902... | Given the context 'We evaluated the transcriptional expression and metabolic performance of ortholog substitution complementing a Sinorhizobium meliloti argC mutant with argC from Rhizobiales (Agrobacterium tumefaciens, Rhizobium etli, and Mesorhizobium loti).', answer the user's query. |
What is the biomedical concept corresponding to 'rhizobium etli'? | [
"rhizobium etli"
] | [
"rhizobium gallicum",
"rhizobium fabae",
"rhizobium mayense",
"rhizobium aouanii"
] | Given the context 'We evaluated the transcriptional expression and metabolic performance of ortholog substitution complementing a Sinorhizobium meliloti argC mutant with argC from Rhizobiales (Agrobacterium tumefaciens, Rhizobium etli, and Mesorhizobium loti).', answer the user's query. |
What is the biomedical concept corresponding to 'mesorhizobium loti'? | [
"mesorhizobium loti (rhizobium loti)",
"rhizobium loti (mesorhizobium loti)"
] | [
"mesorhizobium japonicum",
"mesorhizobium sophorae",
"mesorhizobium argentiipisi",
"mesorhizobium ciceri (rhizobium ciceri)"
] | Given the context 'We evaluated the transcriptional expression and metabolic performance of ortholog substitution complementing a Sinorhizobium meliloti argC mutant with argC from Rhizobiales (Agrobacterium tumefaciens, Rhizobium etli, and Mesorhizobium loti).', answer the user's query. |
What is the biomedical concept corresponding to 's. meliloti'? | [
"ensifer meliloti (sinorhizobium meliloti)",
"sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (sinorhizobium meliloti)",
"sinorhizobium meliloti (sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994)",
"rhizobium meliloti (sinorhizobium meliloti)"
] | [
"peronospora meliloti",
"stenopterapion meliloti (apion meliloti)",
"apion meliloti (stenopterapion meliloti)",
"sinorhizobium meliloti usda 1021"
] | Given the context 'Strains were obtained carrying plasmids with argC orthologs expressed under the speB and argC (S. meliloti) and lac (Escherichia coli) promoters.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'Strains were obtained carrying plasmids with argC orthologs expressed under the speB and argC (S. meliloti) and lac (Escherichia coli) promoters.', answer the user's query. |
What is the biomedical concept corresponding to 's. meliloti'? | [
"ensifer meliloti (sinorhizobium meliloti)",
"sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (sinorhizobium meliloti)",
"sinorhizobium meliloti (sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994)",
"rhizobium meliloti (sinorhizobium meliloti)"
] | [
"peronospora meliloti",
"stenopterapion meliloti (apion meliloti)",
"apion meliloti (stenopterapion meliloti)",
"sinorhizobium meliloti usda 1021"
] | Given the context 'Optimal complementation was directly related to sequence similarity with S. meliloti, and was inversely related to species signature, with M. loti argC showing the poorest performance, followed by R. etli and A. tumefaciens.', answer the user's query. |
What is the biomedical concept corresponding to 'm. loti'? | [
"mesorhizobium loti (rhizobium loti)",
"rhizobium loti (mesorhizobium loti)"
] | [
"methylophilus luteus",
"myolaimus mycophilus",
"mycobacterium lentiflavum",
"microstomum lotti"
] | Given the context 'Optimal complementation was directly related to sequence similarity with S. meliloti, and was inversely related to species signature, with M. loti argC showing the poorest performance, followed by R. etli and A. tumefaciens.', answer the user's query. |
What is the biomedical concept corresponding to 'r. etli'? | [
"rhizobium etli"
] | [
"erotelis",
"rhodnius stali",
"erysiphe lupini",
"eryngium regnellii"
] | Given the context 'Optimal complementation was directly related to sequence similarity with S. meliloti, and was inversely related to species signature, with M. loti argC showing the poorest performance, followed by R. etli and A. tumefaciens.', answer the user's query. |
What is the biomedical concept corresponding to 'a. tumefaciens'? | [
"agrobacterium tumefaciens (agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980))",
"agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980) (agrobacterium tumefaciens)",
"pseudomonas tumefaciens (agrobacterium tumefaciens)",
"phytomonas tumefaciens (... | [
"agrobacterium aurantiacum ('agrobacterium aurantiacum')",
"'agrobacterium aurantiacum' (agrobacterium aurantiacum)",
"agrobacterium leguminum",
"agrobacterium tumefaciens (strain b2a)"
] | Given the context 'Optimal complementation was directly related to sequence similarity with S. meliloti, and was inversely related to species signature, with M. loti argC showing the poorest performance, followed by R. etli and A. tumefaciens.', answer the user's query. |
What is the biomedical concept corresponding to 'htcc2170'? | [
"flavobacteriales bacterium htcc2170 (maribacter sp. htcc2170)"
] | [
"marine gamma proteobacterium htcc2180",
"bacterium htcc8020",
"unidentified marine bacterial clone ht1902",
"bacterium htcc8010"
] | Given the context 'Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae.
', answer the user's query. |
What is the biomedical concept corresponding to 'htcc2170'? | [
"flavobacteriales bacterium htcc2170 (maribacter sp. htcc2170)"
] | [
"marine gamma proteobacterium htcc2180",
"bacterium htcc8020",
"unidentified marine bacterial clone ht1902",
"bacterium htcc8010"
] | Given the context 'Strain HTCC2170 was isolated from surface waters off the Oregon coast using dilution-to-extinction culturing.', answer the user's query. |
What is the biomedical concept corresponding to 'marine bacterium'? | [
"unidentified marine bacterium (uncultured marine bacterium)",
"unknown marine bacterium (uncultured marine bacterium)"
] | [
"marine bacterium",
"unidentified bacterium (bacterium)",
"unidentified marine proteobacterium",
"drinking water bacterium"
] | Given the context 'Here, we present the finished genome sequence of a marine bacterium, Maribacter sp. strain HTCC2170.', answer the user's query. |
What is the biomedical concept corresponding to 'maribacter sp. strain htcc2170'? | [
"maribacter sp. htcc2170 (flavobacteriales bacterium htcc2170)",
"flavobacteriales bacterium htcc2170 (maribacter sp. htcc2170)"
] | [
"maribacter sp. hs",
"maribacter sp. mar_2009_221",
"maribacter sp. th_r10",
"maribacter sp. mar_2009_71"
] | Given the context 'Here, we present the finished genome sequence of a marine bacterium, Maribacter sp. strain HTCC2170.', answer the user's query. |
What is the biomedical concept corresponding to 'htcc2170'? | [
"flavobacteriales bacterium htcc2170 (maribacter sp. htcc2170)"
] | [
"marine gamma proteobacterium htcc2180",
"bacterium htcc8020",
"unidentified marine bacterial clone ht1902",
"bacterium htcc8010"
] | Given the context 'HTCC2170 is predicted to be a facultatively aerobic chemoorganotroph that, based on genomic sequence analysis, is capable of macromolecule degradation and anaerobic respiration.
', answer the user's query. |
What is the biomedical concept corresponding to 'flavobacterium ponti sp. nov.'? | [
"flavobacterium ponti"
] | [
"flavobacterium parvum",
"flavobacterium zepuense",
"flavobacterium enshiense",
"flavobacterium paronense"
] | Given the context 'Flavobacterium ponti sp. nov., isolated from seawater.
', answer the user's query. |
What is the biomedical concept corresponding to 'flavobacterium gelidilacus'? | [
"flavobacterium gelidilacus"
] | [
"flavobacterium geliluteum",
"flavobacterium gelatinilyticum",
"flavobacterium gilvum",
"flavobacterium agricola"
] | Given the context 'Phylogenetic analyses based on 16S rRNA gene sequences showed that strain GSW-R14(T) belonged to the genus Flavobacterium, joining Flavobacterium gelidilacus LMG 21477(T) by a bootstrap resampling value of 100 %.', answer the user's query. |
What is the biomedical concept corresponding to 'f. gelidilacus'? | [
"flavobacterium gelidilacus"
] | [
"fusarium subflagellisporum",
"fusarium acetilerea (fusicolla acetilerea)",
"fusarium fecundum",
"fusarium pseudograminearum"
] | Given the context 'Strain GSW-R14(T) exhibited 97.6 % 16S rRNA gene sequence similarity to F. gelidilacus LMG 21477(T) and similarities of 91.2-95.2 % to other members of the genus Flavobacterium.', answer the user's query. |
What is the biomedical concept corresponding to 'f. gelidilacus'? | [
"flavobacterium gelidilacus"
] | [
"fusarium subflagellisporum",
"fusarium acetilerea (fusicolla acetilerea)",
"fusarium fecundum",
"fusarium pseudograminearum"
] | Given the context 'The fatty acid profile of strain GSW-R14(T) was similar to that of F. gelidilacus LMG 21477(T).', answer the user's query. |
What is the biomedical concept corresponding to 'f. gelidilacus'? | [
"flavobacterium gelidilacus"
] | [
"fusarium subflagellisporum",
"fusarium acetilerea (fusicolla acetilerea)",
"fusarium fecundum",
"fusarium pseudograminearum"
] | Given the context 'The DNA G+C content of strain GSW-R14(T) was 31.4 mol% and its DNA-DNA relatedness with F. gelidilacus LMG 21477(T)', answer the user's query. |
What is the biomedical concept corresponding to 'f. gelidilacus'? | [
"flavobacterium gelidilacus"
] | [
"fusarium subflagellisporum",
"fusarium acetilerea (fusicolla acetilerea)",
"fusarium fecundum",
"fusarium pseudograminearum"
] | Given the context 'Strain GSW-R14(T) could be distinguished from F. gelidilacus and the other species of the genus Flavobacterium by its phylogenetic and genetic distinctiveness and by several phenotypic properties.', answer the user's query. |
What is the biomedical concept corresponding to 'flavobacterium ponti sp. nov.'? | [
"flavobacterium ponti"
] | [
"flavobacterium parvum",
"flavobacterium zepuense",
"flavobacterium enshiense",
"flavobacterium paronense"
] | Given the context 'On the basis of these data, strain GSW-R14(T) is considered to represent a novel species of the genus Flavobacterium, for which the name Flavobacterium ponti sp. nov. is proposed; the type strain is GSW-R14(T)', answer the user's query. |
What is the biomedical concept corresponding to 'thermasporomyces composti gen. nov., sp. nov.'? | [
"thermasporomyces composti"
] | [
"thermaerobacter composti",
"thermus composti",
"thermobacillus composti",
"mycovorax composti"
] | Given the context 'Thermasporomyces composti gen. nov., sp. nov., a thermophilic actinomycete isolated from compost.
', answer the user's query. |
What is the biomedical concept corresponding to 'thermasporomyces composti gen. nov., sp. nov.'? | [
"thermasporomyces composti"
] | [
"thermaerobacter composti",
"thermus composti",
"thermobacillus composti",
"mycovorax composti"
] | Given the context 'Therefore, strain I3(T) represents a novel species in a new genus of the family Nocardioidaceae, for which the name Thermasporomyces composti gen. nov., sp. nov. is proposed.', answer the user's query. |
What is the biomedical concept corresponding to 'phycicoccus dokdonensis ds-8(t)'? | [
"phycicoccus dokdonensis (pedococcus dokdonensis)",
"pedococcus dokdonensis (phycicoccus dokdonensis)"
] | [
"deinococcus persicinus",
"persicivirga dokdonensis (nonlabens dokdonensis)",
"deinococcus planocerae",
"deinococcus seoulensis"
] | Given the context 'The DNA-DNA relatedness values of strain V2M29(T) to Phycicoccus dokdonensis DS-8(T) and Phycicoccus bigeumensis DSM 19264(T) were 32.5+/-3.3 % and 29.2+/-2.3 %, respectively.', answer the user's query. |
What is the biomedical concept corresponding to 'phycicoccus bigeumensis dsm 19264(t)'? | [
"phycicoccus bigeumensis (pedococcus bigeumensis)",
"pedococcus bigeumensis (dastager et al. 2008) nouioui et al. 2018 (pedococcus bigeumensis)",
"pedococcus bigeumensis (pedococcus bigeumensis (dastager et al. 2008) nouioui et al. 2018)"
] | [
"phycella magnifica (phycella cyrtanthoides)",
"phycocomes zhengii (meridianimarinicoccus zhengii)",
"phycicoccus endophyticus",
"leifsonia bigeumensis"
] | Given the context 'The DNA-DNA relatedness values of strain V2M29(T) to Phycicoccus dokdonensis DS-8(T) and Phycicoccus bigeumensis DSM 19264(T) were 32.5+/-3.3 % and 29.2+/-2.3 %, respectively.', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica serovar typhimurium'? | [
"salmonella choleraesuis (salmonella enterica)",
"salmonella enterica (salmonella enterica ser. choleraesuis)",
"salmonella cholerae-suis (salmonella enterica)"
] | [
"salmonella",
"salmonella typhimurium (salmonella enterica subsp. enterica serovar typhimurium)",
"salmonella enterica serovar typhimurium (salmonella enterica subsp. enterica serovar typhimurium)",
"salmonella enterica serotype typhimurium (salmonella enterica subsp. enterica serovar typhimurium)"
] | Given the context 'Opposing contributions of polynucleotide phosphorylase and the membrane protein NlpI to biofilm formation by Salmonella enterica serovar Typhimurium.
', answer the user's query. |
What is the biomedical concept corresponding to 'salmonella enterica serovar typhimurium'? | [
"salmonella choleraesuis (salmonella enterica)",
"salmonella enterica (salmonella enterica ser. choleraesuis)",
"salmonella cholerae-suis (salmonella enterica)"
] | [
"salmonella",
"salmonella typhimurium (salmonella enterica subsp. enterica serovar typhimurium)",
"salmonella enterica serovar typhimurium (salmonella enterica subsp. enterica serovar typhimurium)",
"salmonella enterica serotype typhimurium (salmonella enterica subsp. enterica serovar typhimurium)"
] | Given the context 'CsgD and cyclic-3',5'-di-guanylate are key regulators of biofilm formation in Salmonella enterica serovar Typhimurium.', answer the user's query. |
What is the biomedical concept corresponding to 'tobacco'? | [
"common tobacco (nicotiana tabacum)",
"tobacco (nicotiana tabacum)",
"nicotiana tabacum (american tobacco)",
"american tobacco (nicotiana tabacum)"
] | [
"wild tobacco (nicotiana rustica)",
"tree tobacco (nicotiana glauca)",
"ornamental tobacco (nicotiana alata)",
"flowering tobacco (nicotiana alata)"
] | Given the context 'We strongly advocate the need to strengthen social and policy frameworks to enable the implementation of interventions such as taxation on bidis (small hand-rolled cigarettes), smokeless tobacco, and locally brewed alcohols.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'We propose the creation of the Integrated National Health System in India through provision of universal health insurance, establishment of autonomous organisations to enable accountable and evidence-based good-quality health-care practices and development of appropriately trained human resources, the restructuring of health governance to make it coordinated and decentralised, and legislation of health entitlement for all Indian people.', answer the user's query. |
What is the biomedical concept corresponding to 'coccinella septempunctata l.'? | [
"coccinella septempunctata (seven-spotted lady beetle)",
"coccinella 7-punctata (coccinella septempunctata)",
"seven-spotted lady beetle (coccinella septempunctata)",
"seven-spotted ladybird (coccinella septempunctata)"
] | [
"coccinella septempunctata brucki",
"coccinella impunctata (cynegetis impunctata)",
"coccinella quinquepunctata",
"stenurella septempunctata"
] | Given the context 'We compared the frequency of cannibalism versus intraguild predation by adult predators of four species [the lady beetles Coccinella septempunctata L. and Hippodamia convergens Guerin-Meneville, and the predatory bugs Geocoris bullatus (Say) and Nabis alternatus Parshley] on the eggs of three predator species (all of these predators but Nabis).', answer the user's query. |
What is the biomedical concept corresponding to 'hippodamia convergens guerin-meneville'? | [
"hippodamia convergens (convergent lady beetle)",
"convergent lady beetle (hippodamia convergens)"
] | [
"hyperchiria convergens (austrolippa convergens)",
"austrolippa convergens (hyperchiria convergens)",
"trirhabda convergens",
"hercostomus convergens"
] | Given the context 'We compared the frequency of cannibalism versus intraguild predation by adult predators of four species [the lady beetles Coccinella septempunctata L. and Hippodamia convergens Guerin-Meneville, and the predatory bugs Geocoris bullatus (Say) and Nabis alternatus Parshley] on the eggs of three predator species (all of these predators but Nabis).', answer the user's query. |
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