query stringlengths 53 100 | positive listlengths 1 5 | negative listlengths 1 4 | system stringlengths 68 790 |
|---|---|---|---|
What is the biomedical concept corresponding to 'plum curculio'? | [
"plum curculio (conotrachelus nenuphar)"
] | [
"mexican plum (prunus mexicana)",
"curcuma plicata",
"pinelema curcici",
"yellow plum (spondias dulcis)"
] | Given the context 'However, plum curculios and western corn rootworms, were either unable to walk with a 4 cm trailing tag (plum curculio) or displayed a reduced ability to successfully cross a bare ground arena.', answer the user's query. |
What is the biomedical concept corresponding to 'chrysomela tremulae'? | [
"chrysomela tremulae (chrysomela tremula)",
"chrysomela tremula (chrysomela tremulae)"
] | [
"caliroa tremulae",
"glischrochilus tremulae",
"macleaya tremula (aedes tremulus)",
"cricula tremula"
] | Given the context 'Molecular characterization of three genes encoding aminopeptidases N in the poplar leaf beetle Chrysomela tremulae.
', answer the user's query. |
What is the biomedical concept corresponding to 'c. tremulae'? | [
"chrysomela tremulae (chrysomela tremula)",
"chrysomela tremula (chrysomela tremulae)"
] | [
"fusicladium tremulae",
"cricula tremula",
"caliroa tremulae",
"glischrochilus tremulae"
] | Given the context 'Three genes encoding proteins showing sequence similarity and features typical of insect APNs were characterized in C. tremulae and designed as CtAPN1, CtAPN2 and CtAPN3.', answer the user's query. |
What is the biomedical concept corresponding to 'c. tremulae'? | [
"chrysomela tremulae (chrysomela tremula)",
"chrysomela tremula (chrysomela tremulae)"
] | [
"fusicladium tremulae",
"cricula tremula",
"caliroa tremulae",
"glischrochilus tremulae"
] | Given the context 'Expression analysis of the three C. tremulae APN genes showed that CtAPN2 transcript is more abundant in the fat body, whereas both CtAPN1 and CtAPN3 are specifically expressed in the midgut.', answer the user's query. |
What is the biomedical concept corresponding to 'c. tremulae'? | [
"chrysomela tremulae (chrysomela tremula)",
"chrysomela tremula (chrysomela tremulae)"
] | [
"fusicladium tremulae",
"cricula tremula",
"caliroa tremulae",
"glischrochilus tremulae"
] | Given the context 'Sequence and expression comparisons of CtAPN1, CtAPN2 and CtAPN3 cDNAs in a C. tremulae Bacillus thuringiensis (Bt)-susceptible and in a Bt-resistant strain did not show any polymorphism at the amino acid level or difference at the transcription level.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus thuringiensis'? | [
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980))",
"bacillus thuringiensis berliner 1915 (approved lists 1980) (bacillus thuringiensis)",
"bacillus cereus var. thuringiensis (bacillus thuringiensis)"
] | [
"bacillus thuringiensis thuringiensis (bacillus thuringiensis serovar thuringiensis)",
"bacillus thuringiensis aks-7",
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus thuringiensis bt18247"
] | Given the context 'Sequence and expression comparisons of CtAPN1, CtAPN2 and CtAPN3 cDNAs in a C. tremulae Bacillus thuringiensis (Bt)-susceptible and in a Bt-resistant strain did not show any polymorphism at the amino acid level or difference at the transcription level.
', answer the user's query. |
What is the biomedical concept corresponding to 'theobroma cacao'? | [
"cacao (theobroma cacao)",
"cocoa (theobroma cacao)",
"theobroma cacao (chocolate)",
"chocolate (theobroma cacao)"
] | [
"theobroma pentagonum (theobroma cacao f. pentagonum)",
"theoborus theobromae",
"theobroma cacao f. pentagonum (theobroma pentagonum)",
"theobroma"
] | Given the context 'Dispersion Models and Sampling of Cacao Mirid Bug Sahlbergella singularis (Hemiptera: Miridae) on Theobroma Cacao in Southern Cameroon.
', answer the user's query. |
What is the biomedical concept corresponding to 'cacao'? | [
"cacao (theobroma cacao)",
"cocoa (theobroma cacao)",
"theobroma cacao (chocolate)",
"chocolate (theobroma cacao)"
] | [
"cacaoporus",
"muricea cacao",
"conus cacao",
"cocos"
] | Given the context 'The spatio-temporal distribution of Sahlbergella singularis Haglung, a major pest of cacao trees (Theobroma cacao) (Malvaceae), was studied for 2 yr in traditional cacao forest gardens in the humid forest area of southern Cameroon.', answer the user's query. |
What is the biomedical concept corresponding to 'theobroma cacao'? | [
"cacao (theobroma cacao)",
"cocoa (theobroma cacao)",
"theobroma cacao (chocolate)",
"chocolate (theobroma cacao)"
] | [
"theobroma pentagonum (theobroma cacao f. pentagonum)",
"theoborus theobromae",
"theobroma cacao f. pentagonum (theobroma pentagonum)",
"theobroma"
] | Given the context 'The spatio-temporal distribution of Sahlbergella singularis Haglung, a major pest of cacao trees (Theobroma cacao) (Malvaceae), was studied for 2 yr in traditional cacao forest gardens in the humid forest area of southern Cameroon.', answer the user's query. |
What is the biomedical concept corresponding to 'cacao'? | [
"cacao (theobroma cacao)",
"cocoa (theobroma cacao)",
"theobroma cacao (chocolate)",
"chocolate (theobroma cacao)"
] | [
"cacaoporus",
"muricea cacao",
"conus cacao",
"cocos"
] | Given the context 'The spatio-temporal distribution of Sahlbergella singularis Haglung, a major pest of cacao trees (Theobroma cacao) (Malvaceae), was studied for 2 yr in traditional cacao forest gardens in the humid forest area of southern Cameroon.', answer the user's query. |
What is the biomedical concept corresponding to 'cacao'? | [
"cacao (theobroma cacao)",
"cocoa (theobroma cacao)",
"theobroma cacao (chocolate)",
"chocolate (theobroma cacao)"
] | [
"cacaoporus",
"muricea cacao",
"conus cacao",
"cocos"
] | Given the context 'The first objective was to analyze the dispersion of this insect on cacao trees.', answer the user's query. |
What is the biomedical concept corresponding to 'cacao'? | [
"cacao (theobroma cacao)",
"cocoa (theobroma cacao)",
"theobroma cacao (chocolate)",
"chocolate (theobroma cacao)"
] | [
"cacaoporus",
"muricea cacao",
"conus cacao",
"cocos"
] | Given the context 'This is the first study on S. singularis dispersion in cacao plantations.', answer the user's query. |
What is the biomedical concept corresponding to 'cacao'? | [
"cacao (theobroma cacao)",
"cocoa (theobroma cacao)",
"theobroma cacao (chocolate)",
"chocolate (theobroma cacao)"
] | [
"cacaoporus",
"muricea cacao",
"conus cacao",
"cocos"
] | Given the context 'Sampling plans, presented here, should be a tool for research on population dynamics and pest management decisions of mirid bugs on cacao.
', answer the user's query. |
What is the biomedical concept corresponding to 'serratia marcescens'? | [
"bacillus marcescens (serratia marcescens)",
"serratia marcescens (serratia marcescens subsp. marcescens)"
] | [
"serratia marcescens w2.3",
"marcetia canescens",
"serratia marcescens 12",
"serratia silvae"
] | Given the context 'The Rcs signal transduction pathway is triggered by enterobacterial common antigen structure alterations in Serratia marcescens.
', answer the user's query. |
What is the biomedical concept corresponding to 'serratia marcescens'? | [
"bacillus marcescens (serratia marcescens)",
"serratia marcescens (serratia marcescens subsp. marcescens)"
] | [
"serratia marcescens w2.3",
"marcetia canescens",
"serratia marcescens 12",
"serratia silvae"
] | Given the context 'In a previous work, we have demonstrated that disrupting the integrity of the ECA biosynthetic pathway imposed severe deficiencies to the Serratia marcescens motile (swimming and swarming) capacity.', answer the user's query. |
What is the biomedical concept corresponding to 's. marcescens'? | [
"bacillus marcescens (serratia marcescens)",
"serratia marcescens (serratia marcescens subsp. marcescens)"
] | [
"marcetia canescens",
"serratia marcescens w2.3",
"alsophila marcescens (cyathea marcescens)",
"cyathea marcescens (alsophila marcescens)"
] | Given the context 'We also identify SMA1167 as a member of the S. marcescens Rcs regulon and show that high osmolarity induces Rcs activity in this bacterium.', answer the user's query. |
What is the biomedical concept corresponding to 'arabidopsis thaliana'? | [
"arabidopsis thaliana (mouse-ear cress)",
"arabis thaliana (arabidopsis thaliana)"
] | [
"arabis lyrata (arabidopsis lyrata)",
"euxoa agricola (noctua agricola)",
"noctua agricola (euxoa agricola)",
"plantago africana"
] | Given the context 'Functional characterization of Arabidopsis thaliana isopropylmalate dehydrogenases reveals their important roles in gametophyte development.
', answer the user's query. |
What is the biomedical concept corresponding to 'arabidopsis thaliana'? | [
"arabidopsis thaliana (mouse-ear cress)",
"arabis thaliana (arabidopsis thaliana)"
] | [
"arabis lyrata (arabidopsis lyrata)",
"euxoa agricola (noctua agricola)",
"noctua agricola (euxoa agricola)",
"plantago africana"
] | Given the context 'The Arabidopsis thaliana genome contains three putative IPMDH genes.', answer the user's query. |
What is the biomedical concept corresponding to 'notiomystis cincta'? | [
"notiomystis cincta (meliphaga cincta)",
"meliphaga cincta (notiomystis cincta)"
] | [
"smilogobius cinctus (cryptocentrus cinctus)",
"choeroichthys cinctus",
"cryptocentrus cinctus (smilogobius cinctus)",
"amblyseius cinctus"
] | Given the context '3. Using a 12-year longitudinal data set of a free-living and endangered New Zealand passerine, the hihi (Notiomystis cincta), we show that a changing adult sex ratio has little or no effect on adult female survival or the number of fledglings produced per female.', answer the user's query. |
What is the biomedical concept corresponding to 'humans'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'They show amino acid sequence conservation from mosquitoes to humans, and their transcripts are highly enriched in Aedes aegypti during arbovirus infection.', answer the user's query. |
What is the biomedical concept corresponding to 'aedes aegypti'? | [
"culex aegypti (aedes aegypti)",
"aedes aegypti (aedes (stegomyia) aegypti)",
"yellow fever mosquito (aedes aegypti)",
"stegomyia aegypti (aedes aegypti)",
"aedes (stegomyia) aegypti (aedes aegypti)"
] | [
"aedes flavopictus",
"aedes aegypti aegypti (aedes aegypti queenslandensis)",
"aedes rossicus",
"culex aegypti aegypti (aedes aegypti aegypti)"
] | Given the context 'They show amino acid sequence conservation from mosquitoes to humans, and their transcripts are highly enriched in Aedes aegypti during arbovirus infection.', answer the user's query. |
What is the biomedical concept corresponding to 'sindbis'? | [
"sindbis virus"
] | [
"sindbis-like virus",
"sina virus",
"sais",
"sinapis"
] | Given the context 'Transient gene silencing of SV2 or UNC93A in mosquitoes infected with the recombinant alphavirus Sindbis MRE16-enhanced green fluorescent protein (SINV; family Togaviridae) resulted in the accumulation of viral positive- and negative-strand RNA, congregation of virus envelope antigen in intracellular networks, and reduced virus dissemination outside of the midgut.', answer the user's query. |
What is the biomedical concept corresponding to 'sinv'? | [
"sindbis virus"
] | [
"sina virus",
"sindbis-like virus",
"sinu virus",
"sinaivirus"
] | Given the context 'Transient gene silencing of SV2 or UNC93A in mosquitoes infected with the recombinant alphavirus Sindbis MRE16-enhanced green fluorescent protein (SINV; family Togaviridae) resulted in the accumulation of viral positive- and negative-strand RNA, congregation of virus envelope antigen in intracellular networks, and reduced virus dissemination outside of the midgut.', answer the user's query. |
What is the biomedical concept corresponding to 'sitophilus zeamais'? | [
"sitophilus zeamais (sitophilus oryzae zeamais)",
"sitophilus oryzae zeamais (sitophilus zeamais)",
"maize weevil (sitophilus zeamais)"
] | [
"sitophilus oryzae (rice weevil)",
"rice weevil (sitophilus oryzae)",
"sitophilus",
"corn earworm (helicoverpa zea)"
] | Given the context 'Pyrethroid resistance in Sitophilus zeamais is associated with a mutation (T929I) in the voltage-gated sodium channel.
', answer the user's query. |
What is the biomedical concept corresponding to 'maize weevil'? | [
"maize weevil (sitophilus zeamais)"
] | [
"rice weevil (sitophilus oryzae)",
"boll weevil (anthonomus grandis)",
"apple weevil (anthonomus pomorum)",
"corn earworm (helicoverpa zea)"
] | Given the context 'The maize weevil, Sitophilus zeamais, is the most important pest affecting stored grain in Brazil and its control relies heavily on the use of insecticides.', answer the user's query. |
What is the biomedical concept corresponding to 'sitophilus zeamais'? | [
"sitophilus zeamais (sitophilus oryzae zeamais)",
"sitophilus oryzae zeamais (sitophilus zeamais)",
"maize weevil (sitophilus zeamais)"
] | [
"sitophilus oryzae (rice weevil)",
"rice weevil (sitophilus oryzae)",
"sitophilus",
"corn earworm (helicoverpa zea)"
] | Given the context 'The maize weevil, Sitophilus zeamais, is the most important pest affecting stored grain in Brazil and its control relies heavily on the use of insecticides.', answer the user's query. |
What is the biomedical concept corresponding to 's. zeamais'? | [
"sitophilus zeamais (sitophilus oryzae zeamais)",
"sitophilus oryzae zeamais (sitophilus zeamais)",
"maize weevil (sitophilus zeamais)"
] | [
"scada zemira (ithomia zemira)",
"cornigamasus",
"zeisig (spinus spinus)",
"spermospora zeae"
] | Given the context 'To identify the molecular mechanisms underlying pyrethroid resistance in S. zeamais, the domain II region of the voltage-gated sodium channel (para-orthologue) gene was amplified by PCR and sequenced from susceptible and resistant laboratory S. zeamais strains that were selected with a discriminating dose of DDT.', answer the user's query. |
What is the biomedical concept corresponding to 's. zeamais'? | [
"sitophilus zeamais (sitophilus oryzae zeamais)",
"sitophilus oryzae zeamais (sitophilus zeamais)",
"maize weevil (sitophilus zeamais)"
] | [
"scada zemira (ithomia zemira)",
"cornigamasus",
"zeisig (spinus spinus)",
"spermospora zeae"
] | Given the context 'To identify the molecular mechanisms underlying pyrethroid resistance in S. zeamais, the domain II region of the voltage-gated sodium channel (para-orthologue) gene was amplified by PCR and sequenced from susceptible and resistant laboratory S. zeamais strains that were selected with a discriminating dose of DDT.', answer the user's query. |
What is the biomedical concept corresponding to 's. zeamais'? | [
"sitophilus zeamais (sitophilus oryzae zeamais)",
"sitophilus oryzae zeamais (sitophilus zeamais)",
"maize weevil (sitophilus zeamais)"
] | [
"scada zemira (ithomia zemira)",
"cornigamasus",
"zeisig (spinus spinus)",
"spermospora zeae"
] | Given the context 'A single point mutation, T929I, was found in the para gene of the resistant S. zeamais populations and its presence in individual weevils was strongly associated with survival after DDT exposure.', answer the user's query. |
What is the biomedical concept corresponding to 's. zeamais'? | [
"sitophilus zeamais (sitophilus oryzae zeamais)",
"sitophilus oryzae zeamais (sitophilus zeamais)",
"maize weevil (sitophilus zeamais)"
] | [
"scada zemira (ithomia zemira)",
"cornigamasus",
"zeisig (spinus spinus)",
"spermospora zeae"
] | Given the context 'This is the first identification of a target-site resistance mutation in S. zeamais and unusually it is a super-kdr type mutation occurring in the absence of the more common kdr (L1014F) substitution.', answer the user's query. |
What is the biomedical concept corresponding to 's. zeamais'? | [
"sitophilus zeamais (sitophilus oryzae zeamais)",
"sitophilus oryzae zeamais (sitophilus zeamais)",
"maize weevil (sitophilus zeamais)"
] | [
"scada zemira (ithomia zemira)",
"cornigamasus",
"zeisig (spinus spinus)",
"spermospora zeae"
] | Given the context 'A high-throughput assay based on TaqMan single nucleotide polymorphism genotyping was developed for sensitive detection of the mutation and used to screen field-collected strains of S. zeamais.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)"
] | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"aspergillus nidulellus (aspergillus nidulans)",
"aspergillus aerius"
] | Given the context 'Functional analysis of the fungal/plant class chitinase family in Aspergillus fumigatus.
', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)"
] | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"aspergillus nidulellus (aspergillus nidulans)",
"aspergillus aerius"
] | Given the context 'A quintuple mutant was constructed to delete the entire family of the fungal/plant (class III) chitinases of Aspergillus fumigatus.', answer the user's query. |
What is the biomedical concept corresponding to 'a. fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"neosartorya fumigata (aspergillus fumigatus)",
"sartorya fumigata (aspergillus fumigatus)"
] | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"aspergillus nidulellus (aspergillus nidulans)",
"aspergillus aureus"
] | Given the context 'This result demonstrated that the fungal/plant chitinases do not have an essential role in the morphogenesis of A. fumigatus.', answer the user's query. |
What is the biomedical concept corresponding to 'garter snake'? | [
"western terrestrial garter snake (thamnophis elegans)"
] | [
"pacific garter snake (thamnophis validus)",
"west coast garter snake (thamnophis validus)",
"garrulus striatus (grammatoptila striata)",
"garrulax striatus (grammatoptila striata)"
] | Given the context 'Developmental plasticity of immune defence in two life-history ecotypes of the garter snake, Thamnophis elegans - a common-environment experiment.
', answer the user's query. |
What is the biomedical concept corresponding to 'thamnophis elegans'? | [
"thamnophis elegans (western terrestrial garter snake)",
"eutainia elegans (thamnophis elegans)",
"western terrestrial garter snake (thamnophis elegans)"
] | [
"thamnidium elegans",
"thamnophis elegans terrestris",
"temnora elegans",
"aphodius elegans"
] | Given the context 'Developmental plasticity of immune defence in two life-history ecotypes of the garter snake, Thamnophis elegans - a common-environment experiment.
', answer the user's query. |
What is the biomedical concept corresponding to 'garter snake'? | [
"western terrestrial garter snake (thamnophis elegans)"
] | [
"pacific garter snake (thamnophis validus)",
"west coast garter snake (thamnophis validus)",
"garrulus striatus (grammatoptila striata)",
"garrulax striatus (grammatoptila striata)"
] | Given the context 'Replicate populations of two life-history ecotypes of the garter snake Thamnophis elegans provide an ideal system in which to test this assumption.', answer the user's query. |
What is the biomedical concept corresponding to 'thamnophis elegans'? | [
"thamnophis elegans (western terrestrial garter snake)",
"eutainia elegans (thamnophis elegans)",
"western terrestrial garter snake (thamnophis elegans)"
] | [
"thamnidium elegans",
"thamnophis elegans terrestris",
"temnora elegans",
"aphodius elegans"
] | Given the context 'Replicate populations of two life-history ecotypes of the garter snake Thamnophis elegans provide an ideal system in which to test this assumption.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)"
] | [
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aphanothece nidulans",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)"
] | Given the context 'UreA, the major urea/H+ symporter in Aspergillus nidulans.
', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)"
] | [
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aphanothece nidulans",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)"
] | Given the context 'We report here the characterization of UreA, a high-affinity urea/H+ symporter of Aspergillus nidulans.', answer the user's query. |
What is the biomedical concept corresponding to 'a. nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"sterigmatocystis nidulans (aspergillus nidulans)"
] | [
"aphanothece nidulans",
"aspergillus aureus",
"nassella nidulans",
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)"
] | Given the context 'The deletion of the encoding gene abolishes urea transport at low substrate concentrations, suggesting that in these conditions UreA is the sole transport system specific for urea in A. nidulans.', answer the user's query. |
What is the biomedical concept corresponding to 'a. nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"sterigmatocystis nidulans (aspergillus nidulans)"
] | [
"aphanothece nidulans",
"aspergillus aureus",
"nassella nidulans",
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)"
] | Given the context 'In contrast to what was observed for other transporters in A. nidulans, repression by ammonium is also operative during the isotropic growth phase.', answer the user's query. |
What is the biomedical concept corresponding to 'a. nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"sterigmatocystis nidulans (aspergillus nidulans)"
] | [
"aphanothece nidulans",
"aspergillus aureus",
"nassella nidulans",
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)"
] | Given the context 'A number of homologues of UreA have been identified in A. nidulans and other Aspergilli, which cluster in four groups, two of which contain the urea transporters characterized so far in fungi and plants.', answer the user's query. |
What is the biomedical concept corresponding to 'ustilago maydis'? | [
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"uredo maydis (mycosarcoma maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"ustilago avenae (ustilago aegilopsidis)",
"ustilago aegilopsidis (ustilago avenae)",
"ustilago nigra (ustilago avenae)",
"ustilago vinosa"
] | Given the context 'Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Ustilago maydis, the causative agent of corn smut disease, contains two genes encoding members of the carotenoid cleavage oxygenase family, a group of enzymes that cleave double bonds in different substrates.', answer the user's query. |
What is the biomedical concept corresponding to 'ustilago maydis'? | [
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"uredo maydis (mycosarcoma maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"ustilago avenae (ustilago aegilopsidis)",
"ustilago aegilopsidis (ustilago avenae)",
"ustilago nigra (ustilago avenae)",
"ustilago vinosa"
] | Given the context 'Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Ustilago maydis, the causative agent of corn smut disease, contains two genes encoding members of the carotenoid cleavage oxygenase family, a group of enzymes that cleave double bonds in different substrates.', answer the user's query. |
What is the biomedical concept corresponding to 'corn smut'? | [
"corn smut (mycosarcoma maydis)",
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"uredo maydis (mycosarcoma maydis)"
] | [
"smut grass (sporobolus indicus)",
"ustilago avenae (ustilago aegilopsidis)",
"maize (zea mays)",
"rice false smut (ustilaginoidea virens)"
] | Given the context 'Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Ustilago maydis, the causative agent of corn smut disease, contains two genes encoding members of the carotenoid cleavage oxygenase family, a group of enzymes that cleave double bonds in different substrates.', answer the user's query. |
What is the biomedical concept corresponding to 'ustilago maydis'? | [
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"uredo maydis (mycosarcoma maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"ustilago avenae (ustilago aegilopsidis)",
"ustilago aegilopsidis (ustilago avenae)",
"ustilago nigra (ustilago avenae)",
"ustilago vinosa"
] | Given the context 'Here we elucidate the function of the protein encoded by the second gene, termed here as Ustilago maydis Resveratrol cleavage oxygenase 1 (Um Rco1).', answer the user's query. |
What is the biomedical concept corresponding to 'u. maydis'? | [
"ustilago maydis (mycosarcoma maydis)",
"uredo maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"ustilago maydis virus",
"ustilago avenae (ustilago aegilopsidis)",
"ustilago aegilopsidis (ustilago avenae)",
"ustilago nigra (ustilago avenae)"
] | Given the context 'The activity of Um Rco1 was confirmed by incubation of U. maydis rco1 deletion and over-expression strains with resveratrol.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)"
] | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"aspergillus nidulellus (aspergillus nidulans)",
"aspergillus aerius"
] | Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', answer the user's query. |
What is the biomedical concept corresponding to 'chaetomium globosum'? | [
"chaetomium globosum (chaetomium rectum)",
"chaetomium rectum (chaetomium globosum)"
] | [
"chaetomium globisporum",
"chytridium globosum (rhizophydium globosum)",
"leptographium globosum",
"rhexothecium globosum"
] | Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', answer the user's query. |
What is the biomedical concept corresponding to 'botryotinia fuckeliana'? | [
"botryotinia fuckeliana (botrytis cinerea)",
"sclerotinia fuckeliana (botrytis cinerea)",
"botrytis cinerea (botryotinia fuckeliana)"
] | [
"botrytis fuckeliana",
"botryotinia globosa (botrytis globosa)",
"botrytis globosa (botryotinia globosa)",
"botryotinia ficariarum (botrytis ficariarum)"
] | Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"ethiopian white-footed mouse (stenocephalemys albipes)",
"white-tailed mouse (mystromys albicaudatus)",
"black-eared mouse (peromyscus melanotis)"
] | Given the context 'Linking disease and community ecology through behavioural indicators: immunochallenge of white-footed mice and its ecological impacts.
', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"ethiopian white-footed mouse (stenocephalemys albipes)",
"white-tailed mouse (mystromys albicaudatus)",
"black-eared mouse (peromyscus melanotis)"
] | Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', answer the user's query. |
What is the biomedical concept corresponding to 'peromyscus leucopus'? | [
"peromyscus leucopus (white-footed mouse)",
"white-footed mouse (peromyscus leucopus)"
] | [
"peromyscus leucopus leucopus",
"peromyscus pectoralis (white-ankled mouse)",
"peromyscus furvus",
"peromyscus mexicanus (mexican deer mouse)"
] | Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', answer the user's query. |
What is the biomedical concept corresponding to 'borrelia burgdorferi'? | [
"borrelia burgdorferi (borreliella burgdorferi)",
"borreliella burgdorferi (lyme disease spirochete)",
"lyme disease spirochete (borreliella burgdorferi)"
] | [
"lyme disease borrelia (borreliella)",
"borrelia burgdorferi sensu lato (borreliella)",
"borrelia burgdorferi b31 (borreliella burgdorferi b31)",
"borrelia garinii (borreliella garinii)"
] | Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"ethiopian white-footed mouse (stenocephalemys albipes)",
"white-tailed mouse (mystromys albicaudatus)",
"black-eared mouse (peromyscus melanotis)"
] | Given the context 'White-footed mice are a major reservoir host of Lyme disease (LD) spirochetes in northeastern USA and an abundant member of forest communities.', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"ethiopian white-footed mouse (stenocephalemys albipes)",
"white-tailed mouse (mystromys albicaudatus)",
"black-eared mouse (peromyscus melanotis)"
] | Given the context 'The activity patterns, foraging behaviour, and space use of white-footed mice have implications for population growth rates of community members upon which mice incidentally prey (i.e. gypsy moths and native thrushes), as well as potentially determining host-vector encounter rates and human risk of LD.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'The activity patterns, foraging behaviour, and space use of white-footed mice have implications for population growth rates of community members upon which mice incidentally prey (i.e. gypsy moths and native thrushes), as well as potentially determining host-vector encounter rates and human risk of LD.', answer the user's query. |
What is the biomedical concept corresponding to 'white-footed mice'? | [
"white-footed mouse (peromyscus leucopus)",
"peromyscus leucopus (white-footed mouse)"
] | [
"white-ankled mouse (peromyscus pectoralis)",
"ethiopian white-footed mouse (stenocephalemys albipes)",
"white-tailed mouse (mystromys albicaudatus)",
"black-eared mouse (peromyscus melanotis)"
] | Given the context 'Thus, immunochallenge in white-footed mice, and potentially pathogenic infection, have the potential to indirectly impact community interactions, including those important for pathogen transmission.
', answer the user's query. |
What is the biomedical concept corresponding to 'rice blast pathogen'? | [
"rice blast fungus (pyricularia oryzae)"
] | [
"rhodopseudomonas oryzae ('rhodopseudomonas oryzae')",
"pseudomonas oryzae",
"'rhodopseudomonas oryzae' (rhodopseudomonas oryzae)",
"rhodococcus oryzae"
] | Given the context 'The cell cycle gene MoCDC15 regulates hyphal growth, asexual development and plant infection in the rice blast pathogen Magnaporthe oryzae.
', answer the user's query. |
What is the biomedical concept corresponding to 'magnaporthe oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"monotospora oryzae (nigrospora oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"trematosphaerella oryzae (phaeosphaeria oryzae)",
"phaeosphaeria oryzae (trematosphaerella oryzae)"
] | Given the context 'The cell cycle gene MoCDC15 regulates hyphal growth, asexual development and plant infection in the rice blast pathogen Magnaporthe oryzae.
', answer the user's query. |
What is the biomedical concept corresponding to 'magnaporthe oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"monotospora oryzae (nigrospora oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"trematosphaerella oryzae (phaeosphaeria oryzae)",
"phaeosphaeria oryzae (trematosphaerella oryzae)"
] | Given the context 'Rice blast, caused by the pathogen Magnaporthe oryzae, is a serious hindrance to rice production and has emerged as an important model for the characterization of molecular mechanisms relevant to pathogenic development in plants.', answer the user's query. |
What is the biomedical concept corresponding to 'rice'? | [
"rice (oryza sativa) (oryza sativa)",
"red rice (oryza sativa)",
"oryza sativa (asian cultivated rice)",
"asian cultivated rice (oryza sativa)"
] | [
"common wild rice (oryza rufipogon)",
"red rice (oryza rufipogon)",
"african rice (oryza glaberrima)",
"ricegrass (oryzopsis)"
] | Given the context 'Rice blast, caused by the pathogen Magnaporthe oryzae, is a serious hindrance to rice production and has emerged as an important model for the characterization of molecular mechanisms relevant to pathogenic development in plants.', answer the user's query. |
What is the biomedical concept corresponding to 'm.oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"rice blast fungus (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"monotospora oryzae (nigrospora oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"micromonospora oryzae",
"methylogaea oryzae"
] | Given the context 'Similar to other pathogenic fungi, conidiation plays a central role in initiation of M.oryzae infection and spread over a large area.', answer the user's query. |
What is the biomedical concept corresponding to 'm. oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"rice blast fungus (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"monotospora oryzae (nigrospora oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"micromonospora oryzae",
"methylogaea oryzae"
] | Given the context 'However, relatively little is known regarding the molecular mechanisms that underlie conidiation in M. oryzae.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"baker's yeast (saccharomyces cerevisiae)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces hansenii (debaryomyces hansenii)",
"saccharomyces albicans (candida albicans)",
"saccharomyces globosus (saccharomyces uvarum)"
] | Given the context 'To better characterize these mechanisms, we identified a conidiation-defective mutant, ATMT0225B6 (MoCDC15(T-DNA)), in which a T-DNA insertion disrupted a gene that encodes a homolog of fission yeast cdc15, and generated a second strain containing a disruption in the same allele (DeltaMoCDC15(T-DNA)).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"baker's yeast (saccharomyces cerevisiae)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces hansenii (debaryomyces hansenii)",
"saccharomyces albicans (candida albicans)",
"saccharomyces globosus (saccharomyces uvarum)"
] | Given the context 'The cdc15 gene has been shown to act as a coordinator of the cell cycle in yeast.', answer the user's query. |
What is the biomedical concept corresponding to 'm. oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"rice blast fungus (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"monotospora oryzae (nigrospora oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"micromonospora oryzae",
"methylogaea oryzae"
] | Given the context 'Functional analysis of the MoCDC15(T-DNA) and DeltaMoCDC15(T-DNA) mutants revealed that MoCDC15 is required for conidiation, preinfection development and pathogenicity in M. oryzae.', answer the user's query. |
What is the biomedical concept corresponding to 'm. oryzae'? | [
"magnaporthe oryzae (pyricularia oryzae)",
"magnaporthe oryzae b.c. couch, 2002 (pyricularia oryzae)",
"rice blast fungus (pyricularia oryzae)",
"pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002)"
] | [
"monotospora oryzae (nigrospora oryzae)",
"nigrospora oryzae (monotospora oryzae)",
"micromonospora oryzae",
"methylogaea oryzae"
] | Given the context 'Together, these data indicate that MoCDC15 functions as a coordinator of several biological processes important for pathogenic development in M. oryzae.
', answer the user's query. |
What is the biomedical concept corresponding to 'glomus intraradices'? | [
"glomus intraradices (rhizophagus intraradices)",
"rhizophagus intraradices (glomus intraradices)"
] | [
"glomus indicum",
"glomus iranicum (rhizophagus iranicus)",
"rhizophagus iranicus (glomus iranicum)",
"glomus clarum (rhizophagus clarus)"
] | Given the context 'GintAMT2, a new member of the ammonium transporter family in the arbuscular mycorrhizal fungus Glomus intraradices.
', answer the user's query. |
What is the biomedical concept corresponding to 'glomus intraradices'? | [
"glomus intraradices (rhizophagus intraradices)",
"rhizophagus intraradices (glomus intraradices)"
] | [
"glomus indicum",
"glomus iranicum (rhizophagus iranicus)",
"rhizophagus iranicus (glomus iranicum)",
"glomus clarum (rhizophagus clarus)"
] | Given the context 'Previously, we identified an NH(4)(+) transporter in the AM fungus Glomus intraradices (GintAMT1) involved in NH(4)(+) uptake from the soil when preset at low concentrations.', answer the user's query. |
What is the biomedical concept corresponding to 'g. intraradicesnh(4)'? | [
"glomus intraradices (rhizophagus intraradices)",
"rhizophagus intraradices (glomus intraradices)"
] | [
"hoplodrina ambigua granulovirus",
"heterodera graminis",
"gredihovirus neoterradaptatum",
"guignardia irritans (haloguignardia irritans)"
] | Given the context 'Here, we report the isolation and characterization of a new G. intraradicesNH(4)(+) transporter gene (GintAMT2).', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"baker's yeast (saccharomyces cerevisiae)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces hansenii (debaryomyces hansenii)",
"saccharomyces albicans (candida albicans)",
"saccharomyces globosus (saccharomyces uvarum)"
] | Given the context 'Yeast mutant complementation assays showed that GintAMT2 encodes a functional NH(4)(+) transporter.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatuscyp51a'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"aspergillus fumigatus var. ellipticus (aspergillus fumigatus)",
"sartorya fumigata (aspergillus fumigatus)"
] | [
"aspergillus fumigatus af293",
"aspergillus fumigatus af210",
"aspergillus fumigatus af10",
"aspergillus aureus"
] | Given the context 'The structure-function relationship of the Aspergillus fumigatuscyp51A L98H conversion by site-directed mutagenesis: the mechanism of L98H azole resistance.
', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"neosartorya fumigata (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"sartorya fumigata (aspergillus fumigatus)"
] | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"aspergillus nidulellus (aspergillus nidulans)",
"aspergillus aerius"
] | Given the context 'Since 1998, the rapid emergence of multi-azole-resistance (MAR) was observed in Aspergillus fumigatus in the Netherlands.', answer the user's query. |
What is the biomedical concept corresponding to 'a. fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"neosartorya fumigata (aspergillus fumigatus)",
"sartorya fumigata (aspergillus fumigatus)"
] | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"aspergillus nidulellus (aspergillus nidulans)",
"aspergillus aureus"
] | Given the context 'In this study, we show that molecular dynamics simulations combined with site-directed mutagenesis of amino acid substitutions in the cyp51A gene, correlate to the structure-function relationship of the L98H substitution conferring to MAR in A. fumigatus.', answer the user's query. |
What is the biomedical concept corresponding to 'a. fumigatus'? | [
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus (aspergillus fumigatus var. ellipticus)",
"neosartorya fumigata (aspergillus fumigatus)",
"sartorya fumigata (aspergillus fumigatus)"
] | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)",
"aspergillus nidulellus (aspergillus nidulans)",
"aspergillus aureus"
] | Given the context 'Furthermore, the amino acid leucine in codon 98 in A. fumigatus is highly conserved and important for maintaining the structure of the CYP51A protein that is essential for azole docking.
', answer the user's query. |
What is the biomedical concept corresponding to 'red-backed shrike'? | [
"red-backed shrike (lanius collurio)",
"lanius collurio (red-backed shrike)"
] | [
"northern shrike (lanius excubitor)",
"rufous-tailed shrike (lanius isabellinus)",
"bull-headed shrike (lanius bucephalus)",
"red-headed trogon (harpactes erythrocephalus)"
] | Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', answer the user's query. |
What is the biomedical concept corresponding to 'lanius collurio'? | [
"lanius collurio (red-backed shrike)",
"red-backed shrike (lanius collurio)"
] | [
"lanius collurioides",
"lanius collurio collurio",
"collurio lahtora (lanius meridionalis lahtora)",
"sorocephalus lanatus"
] | Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', answer the user's query. |
What is the biomedical concept corresponding to 'red-backed shrike'? | [
"red-backed shrike (lanius collurio)",
"lanius collurio (red-backed shrike)"
] | [
"northern shrike (lanius excubitor)",
"rufous-tailed shrike (lanius isabellinus)",
"bull-headed shrike (lanius bucephalus)",
"red-headed trogon (harpactes erythrocephalus)"
] | Given the context 'Our findings suggest negative density-dependent regulation of red-backed shrike breeding populations and are consistent with the long-standing hypothesis that conditions in the African staging and wintering areas influence population numbers of species breeding in Europe.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress.
', answer the user's query. |
What is the biomedical concept corresponding to 'neisseria meningitidis'? | [
"micrococcus meningitidis (neisseria meningitidis)",
"neisseria meningitidis (micrococcus meningitidis cerebrospinalis)"
] | [
"neisseria lactamicus (neisseria lactamica)",
"neisseria gonorrhoeae (micrococcus der gonorrhoe)",
"neisseria meningitidis 2003051",
"neisseria lactamica (neisseria lactamicus)"
] | Given the context 'Mapping of the Neisseria meningitidis NadA cell-binding site: relevance of predicted {alpha}-helices in the NH2-terminal and dimeric coiled-coil regions.
', answer the user's query. |
What is the biomedical concept corresponding to 'neisseria meningitidis'? | [
"micrococcus meningitidis (neisseria meningitidis)",
"neisseria meningitidis (micrococcus meningitidis cerebrospinalis)"
] | [
"neisseria lactamicus (neisseria lactamica)",
"neisseria gonorrhoeae (micrococcus der gonorrhoe)",
"neisseria meningitidis 2003051",
"neisseria lactamica (neisseria lactamicus)"
] | Given the context 'NadA is a trimeric autotransporter protein of Neisseria meningitidis belonging to the group of oligomeric coiled-coil adhesins.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'It is implicated in the colonization of the human upper respiratory tract by hypervirulent serogroup B N. meningitidis strains and is part of a multiantigen anti-serogroup B vaccine.', answer the user's query. |
What is the biomedical concept corresponding to 'n. meningitidis'? | [
"micrococcus meningitidis (neisseria meningitidis)",
"neisseria meningitidis (micrococcus meningitidis cerebrospinalis)",
"micrococcus meningitidis cerebrospinalis (neisseria meningitidis)"
] | [
"neisseria meningitidis (serogroup a) (neisseria meningitidis serogroup a)",
"neisseria meningitidis serogroup a (neisseria meningitidis (serogroup a))",
"neisseria meningitidis n 18/01",
"neisseria meningitidis n 5/06"
] | Given the context 'It is implicated in the colonization of the human upper respiratory tract by hypervirulent serogroup B N. meningitidis strains and is part of a multiantigen anti-serogroup B vaccine.', answer the user's query. |
What is the biomedical concept corresponding to 'rabbit'? | [
"rabbit (oryctolagus cuniculus)",
"domestic rabbit (oryctolagus cuniculus)",
"european rabbit (oryctolagus cuniculus)",
"rabbits (oryctolagus cuniculus)",
"japanese white rabbit (oryctolagus cuniculus)"
] | [
"marsh rabbit (sylvilagus palustris)",
"swamp rabbit (sylvilagus aquaticus)",
"lepus palustris (sylvilagus palustris)",
"lepus saxatilis (scrub hare)"
] | Given the context 'In this study, to better define the NadA cell binding site, we exploited (i) a panel of NadA mutants lacking sequences along the coiled-coil stalk and (ii) several oligoclonal rabbit antibodies, and their relative Fab fragments, directed to linear epitopes distributed along the NadA ectodomain.', answer the user's query. |
What is the biomedical concept corresponding to 'burkholderia cenocepacia'? | [
"burkholderia cenocepacia (burkholderia cepacia genomovar iii)",
"burkholderia cepacia genomovar iii (burkholderia cenocepacia)"
] | [
"pseudomonas cepacia (burkholderia cepacia)",
"burkholderia cepacia (burkholderia cepacia genomovar i)",
"burkholderia cenocepacia kc-01",
"burkholderia dolosa (burkholderia cepacia genomovar vi)"
] | Given the context 'The Burkholderia cenocepacia LysR-type transcriptional regulator ShvR influences expression of quorum-sensing, protease, type II secretion, and afc genes.
Burkholderia cenocepacia is a significant opportunistic pathogen in individuals with cystic fibrosis.', answer the user's query. |
What is the biomedical concept corresponding to 'burkholderia cenocepacia'? | [
"burkholderia cenocepacia (burkholderia cepacia genomovar iii)",
"burkholderia cepacia genomovar iii (burkholderia cenocepacia)"
] | [
"pseudomonas cepacia (burkholderia cepacia)",
"burkholderia cepacia (burkholderia cepacia genomovar i)",
"burkholderia cenocepacia kc-01",
"burkholderia dolosa (burkholderia cepacia genomovar vi)"
] | Given the context 'The Burkholderia cenocepacia LysR-type transcriptional regulator ShvR influences expression of quorum-sensing, protease, type II secretion, and afc genes.
Burkholderia cenocepacia is a significant opportunistic pathogen in individuals with cystic fibrosis.', answer the user's query. |
What is the biomedical concept corresponding to 'aeromonas hydrophila'? | [
"aeromonas hydrophila (aeromonas hydrophila (chester 1901) stanier 1943 (approved lists 1980))",
"aeromonas hydrophila (chester 1901) stanier 1943 (approved lists 1980) (aeromonas hydrophila)",
"bacterium hydrophilum (aeromonas hydrophila)",
"pseudomonas hydrophila (aeromonas hydrophila)",
"aeromonas liquef... | [
"aeromonas hydrophila anaerogenes (aeromonas caviae)",
"aeromonas punctata (aeromonas caviae)",
"aeromonas enterica",
"aeromonas"
] | Given the context 'Assembly of the type II secretion system: identification of ExeA residues critical for peptidoglycan binding and secretin multimerization.
Aeromonas hydrophila secretes a number of protein toxins across the outer membrane via the type II secretion system (T2SS).', answer the user's query. |
What is the biomedical concept corresponding to 'mycobacterium tuberculosis'? | [
"bacillus tuberculosis (mycobacterium tuberculosis)",
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neu... | [
"mycobacterium tuberculosis avium (mycobacterium avium)",
"bacillus tuberculosis gallinarum (mycobacterium avium)",
"mycobacterium tuberculosis subsp. tuberculosis",
"mycobacterium abscessus (mycobacteroides abscessus)"
] | Given the context 'Functional analysis of molybdopterin biosynthesis in mycobacteria identifies a fused molybdopterin synthase in Mycobacterium tuberculosis.
', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacillus tuberculosis (mycobacterium tuberculosis)",
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neu... | [
"mycobacterium tuberculosis avium (mycobacterium avium)",
"mycobacterium tuberculosis subsp. tuberculosis",
"bacillus tuberculosis gallinarum (mycobacterium avium)",
"mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980))"
] | Given the context 'A mutant of M. tuberculosis lacking the moaA1-moaD1 gene cluster and a derivative in which moaD2 was also deleted were significantly impaired for growth in media containing nitrate as a sole nitrogen source, indicating a reduced availability of MoCo to support the assimilatory function of the MoCo-dependent nitrate reductase, NarGHI.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacillus tuberculosis (mycobacterium tuberculosis)",
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neu... | [
"mycobacterium tuberculosis avium (mycobacterium avium)",
"mycobacterium tuberculosis subsp. tuberculosis",
"bacillus tuberculosis gallinarum (mycobacterium avium)",
"mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980))"
] | Given the context 'The M. tuberculosis moaD and moaE homologs were further analyzed by expressing these genes in mutant strains of M. smegmatis that lacked one or both of the sole molybdopterin (MPT) synthase-encoding genes, moaD2 and moaE2, and were unable to grow on nitrate, presumably as a result of the loss of MoCo-dependent nitrate assimilatory activity.', answer the user's query. |
What is the biomedical concept corresponding to 'm. smegmatis'? | [
"mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (mycolicibacterium smegmatis)",
"mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980))",
"mycobacterium paratuberculosis smegmatis (mycolicibacterium smegmatis)"... | [
"mycobacterium terrae (mycolicibacter terrae)",
"mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8)",
"mycobacterium talmoniae ('mycobacterium coloregonium')",
"mycobacterium murale (mycolicibacterium murale)"
] | Given the context 'The M. tuberculosis moaD and moaE homologs were further analyzed by expressing these genes in mutant strains of M. smegmatis that lacked one or both of the sole molybdopterin (MPT) synthase-encoding genes, moaD2 and moaE2, and were unable to grow on nitrate, presumably as a result of the loss of MoCo-dependent nitrate assimilatory activity.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacillus tuberculosis (mycobacterium tuberculosis)",
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neu... | [
"mycobacterium tuberculosis avium (mycobacterium avium)",
"mycobacterium tuberculosis subsp. tuberculosis",
"bacillus tuberculosis gallinarum (mycobacterium avium)",
"mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980))"
] | Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'm. smegmatis'? | [
"mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (mycolicibacterium smegmatis)",
"mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980))",
"mycobacterium paratuberculosis smegmatis (mycolicibacterium smegmatis)"... | [
"mycobacterium terrae (mycolicibacter terrae)",
"mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8)",
"mycobacterium talmoniae ('mycobacterium coloregonium')",
"mycobacterium murale (mycolicibacterium murale)"
] | Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacillus tuberculosis (mycobacterium tuberculosis)",
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neu... | [
"mycobacterium tuberculosis avium (mycobacterium avium)",
"mycobacterium tuberculosis subsp. tuberculosis",
"bacillus tuberculosis gallinarum (mycobacterium avium)",
"mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980))"
] | Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'm. smegmatis'? | [
"mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (mycolicibacterium smegmatis)",
"mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980))",
"mycobacterium paratuberculosis smegmatis (mycolicibacterium smegmatis)"... | [
"mycobacterium terrae (mycolicibacter terrae)",
"mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8)",
"mycobacterium talmoniae ('mycobacterium coloregonium')",
"mycobacterium murale (mycolicibacterium murale)"
] | Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacillus tuberculosis (mycobacterium tuberculosis)",
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neu... | [
"mycobacterium tuberculosis avium (mycobacterium avium)",
"mycobacterium tuberculosis subsp. tuberculosis",
"bacillus tuberculosis gallinarum (mycobacterium avium)",
"mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980))"
] | Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', answer the user's query. |
What is the biomedical concept corresponding to 'm. smegmatis'? | [
"mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (mycolicibacterium smegmatis)",
"mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980))",
"mycobacterium paratuberculosis smegmatis (mycolicibacterium smegmatis)"... | [
"mycobacterium terrae (mycolicibacter terrae)",
"mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8)",
"mycobacterium talmoniae ('mycobacterium coloregonium')",
"mycobacterium murale (mycolicibacterium murale)"
] | Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', answer the user's query. |
What is the biomedical concept corresponding to 'm. tuberculosis'? | [
"bacillus tuberculosis (mycobacterium tuberculosis)",
"bacterium tuberculosis (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (mycobacterium tuberculosis)",
"mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neu... | [
"mycobacterium tuberculosis avium (mycobacterium avium)",
"mycobacterium tuberculosis subsp. tuberculosis",
"bacillus tuberculosis gallinarum (mycobacterium avium)",
"mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980))"
] | Given the context 'By implicating multiple synthase-encoding homologs in MoCo biosynthesis, these results suggest that important cellular functions may be served by their expansion in M. tuberculosis.
', answer the user's query. |
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