instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'Lineage-specific signature peptides have been determined for the hemagglutinin antigen of type A H1N1 and type B influenza viruses.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [type a h1n1; type b influenza viruses]
<Options>: A: influenza a virus (a/china)
B: human influenza a virus (aka influenza a virus)
C: influenza virus type a (aka influenza a virus)
D: influenza b virus (influenza virus type b) (aka influenza b virus)
E: influenza c virus (influenza virus type c) (aka influenza c virus)
F: influenzavirus c (aka gammainfluenzavirus)
G: influenzavirus a (aka alphainfluenzavirus)
H: flubv (aka influenza b virus)
I: h1n1 (aka h1n1 subtype) (aka h1n1 subtype)
J: None of the above. | [B; H] |
<Instruct>: Given the context 'Lineage-specific signature peptides have been determined for the hemagglutinin antigen of type A H1N1 and type B influenza viruses.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [type a h1n1; type b influenza viruses]
<Options>: A: influenza b virus (influenza virus type b) (aka influenza b virus)
B: influenza c virus (influenza virus type c) (aka influenza c virus)
C: influenza a virus (a/china)
D: influenzavirus a (aka alphainfluenzavirus)
E: h1n1 (aka h1n1 subtype) (aka h1n1 subtype)
F: influenzavirus c (aka gammainfluenzavirus)
G: influenza virus type a (aka influenza a virus)
H: flubv (aka influenza b virus)
I: None of the above. | [I; H] |
<Instruct>: Given the context 'Lineage-specific signature peptides have been determined for the hemagglutinin antigen of type A H1N1 and type B influenza viruses.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [type a h1n1; type b influenza viruses]
<Options>: A: h1n1 subtype (h1n1 (aka h1n1 subtype))
B: influenzavirus a (aka alphainfluenzavirus)
C: swine influenza virus
D: influenza c viruses (aka influenza c virus)
E: influenza b virus (influenza virus type b) (aka influenza b virus)
F: influenza a virus (a/china)
G: influenzavirus d (aka deltainfluenzavirus)
H: influenza a virus (h1n1) (unidentified influenza a virus (h1n1)) (aka influenza a virus (h1n1))
I: influenza virus type a (aka influenza a virus)
J: None of the above. | [I; E] |
<Instruct>: Given the context 'This proteotyping approach complements conventional PCR approaches and should aid in the monitoring of the evolution of the influenza virus in both humans and animals.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [influenza virus; humans]
<Options>: A: macrobiotus sapiens
B: flubv (aka influenza b virus)
C: influenzavirus a (aka alphainfluenzavirus)
D: human influenza a virus (aka influenza a virus)
E: humans (aka homo)
F: influenza virus type c (aka influenza c virus)
G: pediculus humanus humanus (aka pediculus humanus corporis)
H: hominidae (great apes) (aka hominidae)
I: homo sapiens (human) (aka homo sapiens)
J: swine influenza virus
K: None of the above. | [B; I] |
<Instruct>: Given the context 'This proteotyping approach complements conventional PCR approaches and should aid in the monitoring of the evolution of the influenza virus in both humans and animals.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [influenza virus; humans]
<Options>: A: influenza virus type a (aka influenza a virus)
B: homo sapiens (human) (aka homo sapiens)
C: homopus
D: equine influenza virus
E: influenzavirus c (aka gammainfluenzavirus)
F: pediculus humanus humanus (aka pediculus humanus corporis)
G: gymnopleurus humanus
H: flubv (aka influenza b virus)
I: influenza virus (aka unidentified influenza virus)
J: neanderthal (aka homo sapiens neanderthalensis)
K: None of the above. | [H; B] |
<Instruct>: Given the context 'Development of an IgM-capture ELISA for Coxsackievirus A16 infection.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [coxsackievirus a16]
<Options>: A: coxsackievirus a14 (human coxsackievirus a14) (aka coxsackievirus a14)
B: coxsackievirus a13 (human coxsackievirus a13) (aka coxsackievirus a13)
C: coxsackievirus a18 (human coxsackievirus a18) (aka coxsackievirus a18)
D: coxsackievirus a16 (strain cva16-gz)
E: cv-a12 (aka coxsackievirus a12)
F: None of the above. | [F] |
<Instruct>: Given the context 'Diagnosis of Coxsackievirus A16 (CA16) infection in China relies mainly on reverse transcription-polymerase chain reaction (RT-PCR) that require expensive equipment and special trained personnel, thus making its wide application in health care settings unlikely.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [coxsackievirus a16; ca16]
<Options>: A: uncultured organism ca37
B: cv-a16 (aka coxsackievirus a16)
C: lachnospiraceae bacterium ca19
D: coxsackievirus a16 (strain cva16-gz)
E: coxsackievirus a11 (human coxsackievirus a11) (aka coxsackievirus a11)
F: coxsackievirus a13 (human coxsackievirus a13) (aka coxsackievirus a13)
G: caerois
H: geastraceae 'ca02'
I: cea
J: coxsackievirus a18 (human coxsackievirus a18) (aka coxsackievirus a18)
K: None of the above. | [K; K] |
<Instruct>: Given the context 'Diagnosis of Coxsackievirus A16 (CA16) infection in China relies mainly on reverse transcription-polymerase chain reaction (RT-PCR) that require expensive equipment and special trained personnel, thus making its wide application in health care settings unlikely.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [coxsackievirus a16; ca16]
<Options>: A: coxsackievirus a16 (strain cva16-gz)
B: coxsackievirus a18 (human coxsackievirus a18) (aka coxsackievirus a18)
C: coxsackievirus a11 (human coxsackievirus a11) (aka coxsackievirus a11)
D: cea
E: enterovirus ca6 (aka coxsackievirus a6)
F: genista cinerea subsp. murcica (genista murcica) (aka genista cinerea subsp. murcica)
G: caecidae
H: coxsackievirus a13 (human coxsackievirus a13) (aka coxsackievirus a13)
I: cv-a12 (aka coxsackievirus a12)
J: cazia
K: None of the above. | [K; K] |
<Instruct>: Given the context 'In this study, a novel IgM anti-CA16 assay was developed for the detection of IgM antibodies to CA16 in serum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ca16]
<Options>: A: candida albicans ca6
B: firmicutes bacterium ca7
C: cea
D: caio
E: caecidae
F: None of the above. | [F] |
<Instruct>: Given the context 'The responses and diagnostic value of IgM for the CA16 infection were assessed by testing 1970 serum samples.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ca16]
<Options>: A: uncultured organism ca37
B: canga
C: candida albicans ca6
D: geastraceae 'ca02'
E: staphylococcus aureus ca11
F: None of the above. | [F] |
<Instruct>: Given the context 'The results showed that sensitivity of IgM test was 84.6% (259/306, 95% CI: 80.1-88.5), and specificity in control subjects and patients with CA16 HFMD was 99.2% (1508/1520, 95% CI: 98.6-99.6) and 90.3% (14/144, 95% CI: 84.2-94.6), respectively.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ca16]
<Options>: A: lachnospiraceae bacterium ca19
B: staphylococcus aureus ca11
C: canga
D: candida albicans ca6
E: geastraceae 'ca02'
F: None of the above. | [F] |
<Instruct>: Given the context 'The cross-reaction rate in patients infected with other non-CA16 enteroviruses was 9.7% (14/144).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ca16]
<Options>: A: caio
B: colga
C: crotalaria cornu-ammonis
D: colon viennense
E: geastraceae 'ca02'
F: None of the above. | [F] |
<Instruct>: Given the context 'These results suggest that the IgM anti-CA16 assay offers a rapid, convenient, and reliable method to detect acute CA16 infections.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ca16]
<Options>: A: caio
B: crotalaria cornu-ammonis
C: cea
D: lachnospiraceae bacterium ca19
E: candida albicans ca6
F: None of the above. | [F] |
<Instruct>: Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pea aphid; serratia symbiotica; pea aphids; acyrthosiphon pisum]
<Options>: A: english grain aphid (aka sitobion avenae)
B: potato aphid (aka aphis nasturtii)
C: pea aphid (aka acyrthosiphon pisum)
D: serratia symbiotica afa2.1
E: aphids (aka aphididae)
F: agathidium pisanum
G: pison atrum
H: serratia symbiotica (candidatus serratia symbiotica) (aka serratia symbiotica)
I: synergus symbioticus
J: serratia ureilytica
K: pea weevil (aka bruchus pisorum)
L: serratia symbiotica cwbi2.3
M: bird cherry-oat aphid (aka rhopalosiphum padi)
N: aphidius avenae
O: apion aciculare (aka helianthemapion aciculare)
P: afroptilum acutum (aka adafroptilum acutum)
Q: None of the above. | [C; H; C; C] |
<Instruct>: Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pea aphid; serratia symbiotica; pea aphids; acyrthosiphon pisum]
<Options>: A: serratia symbiotica cwbi2.3
B: synergus symbioticus
C: afroptilum acutum (aka adafroptilum acutum)
D: apion aciculare (aka helianthemapion aciculare)
E: bird cherry-oat aphid (aka rhopalosiphum padi)
F: aphidius avenae
G: aphids (aka aphididae)
H: serratia ureilytica
I: serratia symbiotica afa2.1
J: pison atrum
K: agathidium pisanum
L: pea weevil (aka bruchus pisorum)
M: potato aphid (aka aphis nasturtii)
N: english grain aphid (aka sitobion avenae)
O: serratia symbiotica (candidatus serratia symbiotica) (aka serratia symbiotica)
P: None of the above. | [P; O; P; P] |
<Instruct>: Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pea aphid; serratia symbiotica; pea aphids; acyrthosiphon pisum]
<Options>: A: aciagrion migratum (pseudagrion migratum) (aka aciagrion migratum)
B: pea weevil (aka bruchus pisorum)
C: peach-potato aphid (aka myzus persicae)
D: acronema radiatum (pimpinella radiata) (aka acronema radiatum)
E: serratia symbiotica (candidatus serratia symbiotica) (aka serratia symbiotica)
F: serratia symbiotica (periphyllus acericola)
G: soybean aphid (aka aphis glycines)
H: aphids (aka aphidomorpha)
I: pea aphid (aka acyrthosiphon pisum)
J: aphidius avenae
K: saphonecrus symbioticus
L: grain aphid (aka sitobion avenae)
M: serratia ureilytica
N: serratia entomophila
O: bird cherry-oat aphid (aka rhopalosiphum padi)
P: apion aciculare (aka helianthemapion aciculare)
Q: agathidium pisanum
R: cowpea aphid (aka aphis craccivora)
S: None of the above. | [I; E; I; I] |
<Instruct>: Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pea aphid; serratia symbiotica; pea aphids; acyrthosiphon pisum]
<Options>: A: acyrthosiphon
B: pimpinella radiata (aka acronema radiatum)
C: aphidius rubi (aka aphidius urticae)
D: candidatus serratia symbiotica (aka serratia symbiotica)
E: serratia oryzae
F: bird cherry-oat aphid (aka rhopalosiphum padi)
G: cowpea aphid (aka aphis craccivora)
H: serratia rhizosphaerae
I: predatory gall midge (aka aphidoletes aphidimyza)
J: soybean aphid (aka aphis glycines)
K: synergus symbioticus
L: acrydium acuminatum (aka paulinia acuminata)
M: pea weevil (aka bruchus pisorum)
N: serratia symbiotica (cacopsylla coccinea)
O: black bean aphid (aka aphis fabae)
P: aphidius tarsalis
Q: apion acuminatum (aka lepidapion acuminatum)
R: pea aphid (aka acyrthosiphon pisum)
S: None of the above. | [R; D; R; R] |
<Instruct>: Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pea aphid; serratia symbiotica; pea aphids; acyrthosiphon pisum]
<Options>: A: predatory gall midge (aka aphidoletes aphidimyza)
B: pea aphid (aka acyrthosiphon pisum)
C: english grain aphid (aka sitobion avenae)
D: soybean aphid (aka aphis glycines)
E: candidatus serratia symbiotica (aka serratia symbiotica)
F: peach-potato aphid (aka myzus persicae)
G: aphidius avenae
H: synergus symbioticus
I: acrydium acuminatum (aka paulinia acuminata)
J: apion aciculare (aka helianthemapion aciculare)
K: serratia entomophila
L: cotton aphid (aka aphis gossypii)
M: aphis gossypii (cotton aphid) (aka aphis gossypii)
N: acyrthosiphon calvulus (aka sitobion calvulum)
O: serratia symbiotica (periphyllus acericola)
P: aciagrion migratum (pseudagrion migratum) (aka aciagrion migratum)
Q: serratia symbiotica cwbi2.3
R: None of the above. | [B; E; B; B] |
<Instruct>: Given the context 'Previous studies show a large impact of S. symbiotica upon the aphid metabolome.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. symbiotica]
<Options>: A: sphingorhabdus soli
B: serratia symbiotica (candidatus serratia symbiotica) (aka serratia symbiotica)
C: plakortis symbiotica
D: serratia symbiotica (epitrioza mizuhonica)
E: symbiomonas
F: None of the above. | [B] |
<Instruct>: Given the context 'Whole-genome transcriptional profiling and next-generation sequencing demonstrated expression of 94% of RefSeq genes from the pea aphid genome, providing the largest dataset to date on aphid gene expression.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pea aphid]
<Options>: A: aphidius rubi (aka aphidius urticae)
B: peach-potato aphid (aka myzus persicae)
C: aphidius tarsalis
D: pea aphid (aka acyrthosiphon pisum)
E: aphids (aka aphididae)
F: None of the above. | [D] |
<Instruct>: Given the context 'However, only 28 genes showed changes in expression with S. symbiotica infection, and these changes were of small magnitude.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. symbiotica]
<Options>: A: serratia symbiotica (periphyllus acericola)
B: serratia symbiotica (candidatus serratia symbiotica) (aka serratia symbiotica)
C: sphingorhabdus planktonica
D: synergus symbioticus
E: solmundaegina nematophora
F: None of the above. | [B] |
<Instruct>: Given the context 'Therefore, the large metabolic impact of S. symbiotica is most likely a result of metabolism of the symbiont itself, or of post-transcriptional modification of host gene expression.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. symbiotica]
<Options>: A: plakortis symbiotica
B: serratia symbiotica (candidatus serratia symbiotica) (aka serratia symbiotica)
C: serratia symbiotica (cacopsylla coccinea)
D: serratia symbiotica (periphyllus acericola)
E: serratia symbiotica (tuberolachnus salignus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Although S. symbiotica has a major influence on its host's metabolome and resistance to heat, it induces little change in gene expression in its host.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. symbiotica]
<Options>: A: serratia symbiotica (epitrioza yasumatsui)
B: serratia symbiotica (candidatus serratia symbiotica) (aka serratia symbiotica)
C: plakortis symbiotica
D: sphingorhabdus soli
E: solmundaegina nematophora
F: None of the above. | [B] |
<Instruct>: Given the context 'Molecular cloning and characterization of a thioredoxin peroxidase gene from Apis cerana cerana.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [apis cerana cerana]
<Options>: A: apis callosa (aka ceratina callosa)
B: little honeybee (aka apis florea)
C: apis cerana javana
D: western honey bee (aka apis mellifera)
E: apis cerana (apis mellifera cerana) (aka apis cerana)
F: None of the above. | [E] |
<Instruct>: Given the context 'In the present study, we cloned the full cDNA of Tpx1 encoding a 195-amino acid protein from Apis cerana cerana (Acc).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [apis cerana cerana (acc)]
<Options>: A: apis indica (aka apis cerana indica)
B: asiatic honeybee (aka apis cerana)
C: apis cerana cerana
D: caucasian honeybee (aka apis mellifera caucasica)
E: western honey bee (aka apis mellifera)
F: None of the above. | [B] |
<Instruct>: Given the context 'Quantitative PCR analysis showed that AccTpx1 was highly expressed in thorax and that the AccTpx1 transcript reached its highest level in two-week-old adult worker honeybees.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [worker honeybees]
<Options>: A: oriental honeybee (aka apis cerana)
B: common honeybee (aka apis mellifera ligustica)
C: honeybee (aka apis mellifera)
D: rock honeybee (aka apis dorsata)
E: himalayan honeybee (aka apis laboriosa)
F: None of the above. | [A] |
<Instruct>: Given the context 'Quantitative PCR analysis showed that AccTpx1 was highly expressed in thorax and that the AccTpx1 transcript reached its highest level in two-week-old adult worker honeybees.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [worker honeybees]
<Options>: A: rock honeybee (aka apis dorsata)
B: himalayan honeybee (aka apis laboriosa)
C: honeybee (aka apis mellifera)
D: common honeybee (aka apis mellifera ligustica)
E: None of the above. | [E] |
<Instruct>: Given the context 'These results suggest that AccTpx1 plays an important role in protecting honeybees from oxidative injury and may act in extending the lifespan of them.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [honeybees]
<Options>: A: european honey bee (aka apis mellifera)
B: asiatic honeybee (aka apis cerana)
C: apis mellifera mellifera (german honeybee) (aka apis mellifera mellifera)
D: giant honeybee (aka apis dorsata)
E: little honeybee (aka apis florea)
F: None of the above. | [B] |
<Instruct>: Given the context 'Acclimation to high CO2 in maize is related to water status and dependent on leaf rank.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize]
<Options>: A: maize (aka zea mays)
B: zelus grassans
C: teosinte (aka zea perennis)
D: maize (aka zea mays subsp. mays)
E: corn earworm (aka helicoverpa zea)
F: None of the above. | [A] |
<Instruct>: Given the context 'In this study, the effects of atmospheric CO(2) availability on the transcriptome, proteome and metabolome profiles of two ranks of source leaves in maize (Zea mays L.) were studied in plants grown under ambient CO(2) conditions (350 +/- 20 muL L(-1) CO(2) ) or with CO(2) enrichment (700 +/- 20 muL L(-1) CO(2) ).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize; zea mays]
<Options>: A: agromyces ramosus (agromyces ramosum) (aka agromyces ramosus)
B: tylenchus zeae
C: perennial teosinte (aka zea perennis)
D: corn ear worm (aka helicoverpa armigera)
E: zea mays (zea mays var. japonica) (aka zea mays)
F: zea mexicana (aka zea mays subsp. mexicana)
G: zelus grassans
H: maize weevil (aka sitophilus zeamais)
I: None of the above. | [E; E] |
<Instruct>: Given the context 'In this study, the effects of atmospheric CO(2) availability on the transcriptome, proteome and metabolome profiles of two ranks of source leaves in maize (Zea mays L.) were studied in plants grown under ambient CO(2) conditions (350 +/- 20 muL L(-1) CO(2) ) or with CO(2) enrichment (700 +/- 20 muL L(-1) CO(2) ).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize; zea mays]
<Options>: A: zea mays (zea mays var. japonica) (aka zea mays)
B: avena agropyroides (aka helictochloa agropyroides)
C: zea perennis (perennial teosinte) (aka zea perennis)
D: zea ramosa (aka zea mays subsp. mays)
E: agrococcus terreus
F: zelus grassans
G: tylenchus zeae
H: zeus nebulosus (aka zenopsis nebulosus)
I: agrococcus citreus
J: None of the above. | [A; A] |
<Instruct>: Given the context 'Seasonal dynamics in the stable carbon isotope composition delta^1^3C from non-leafy branch, trunk and coarse root CO2 efflux of adult deciduous (Fagus sylvatica) and evergreen (Picea abies) trees.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fagus sylvatica; picea abies]
<Options>: A: american beech (aka fagus grandifolia)
B: fagus antarctica (aka nothofagus antarctica)
C: picea abies var. abies
D: european beech (aka fagus sylvatica)
E: picea glehnii (abies glehnii) (aka picea glehnii)
F: red spruce (aka picea rubens)
G: picea glauca (white spruce) (aka picea glauca)
H: fridericia sylvatica
I: fagus alpina (aka nothofagus alpina)
J: picea excelsa (aka picea abies)
K: None of the above. | [D; J] |
<Instruct>: Given the context 'Seasonal dynamics in the stable carbon isotope composition delta^1^3C from non-leafy branch, trunk and coarse root CO2 efflux of adult deciduous (Fagus sylvatica) and evergreen (Picea abies) trees.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fagus sylvatica; picea abies]
<Options>: A: picea lowiana (aka abies lowiana)
B: fagus crenata (japanese beech) (aka fagus crenata)
C: picea concolor (aka abies concolor)
D: picea
E: european beech (aka fagus sylvatica)
F: fagus nayonica (aka fagus lucida)
G: red spruce (aka picea rubens)
H: fagus moesiaca (aka fagus taurica)
I: fagus hayatae
J: pinus abies l. (aka picea abies)
K: None of the above. | [E; J] |
<Instruct>: Given the context 'Seasonal dynamics in the stable carbon isotope composition delta^1^3C from non-leafy branch, trunk and coarse root CO2 efflux of adult deciduous (Fagus sylvatica) and evergreen (Picea abies) trees.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fagus sylvatica; picea abies]
<Options>: A: pinus abies l. (aka picea abies)
B: fagus moesiaca (aka fagus taurica)
C: picea concolor (aka abies concolor)
D: picea
E: fagus hayatae
F: fagus nayonica (aka fagus lucida)
G: picea lowiana (aka abies lowiana)
H: red spruce (aka picea rubens)
I: fagus crenata (japanese beech) (aka fagus crenata)
J: None of the above. | [J; A] |
<Instruct>: Given the context 'We studied seasonal dynamics in delta^1^3C of CO2 efflux (delta^1^3C(E)) from non-leafy branches, upper and lower trunks and coarse roots of adult trees, comparing deciduous Fagus sylvatica (European beech) with evergreen Picea abies (Norway spruce).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fagus sylvatica; european beech; picea abies; norway spruce]
<Options>: A: fagus crenata (japanese beech) (aka fagus crenata)
B: norway pout (aka trisopterus esmarkii)
C: abies concolor (picea concolor) (aka abies concolor)
D: picea glauca (white spruce) (aka picea glauca)
E: picea brachytyla (abies brachytyla) (aka picea brachytyla)
F: picea glehnii (abies glehnii) (aka picea glehnii)
G: fagus alpina (aka nothofagus alpina)
H: siberian spruce (aka picea obovata)
I: picea montana (aka picea abies)
J: european white birch (aka betula pendula)
K: fagus brevipetiolata (aka fagus longipetiolata)
L: spruce pine (aka pinus glabra)
M: european honey bee (aka apis mellifera)
N: fagus fusca (aka nothofagus fusca)
O: fagus sylvatica (fagus sylvestris) (aka fagus sylvatica)
P: beech trees (aka fagus)
Q: None of the above. | [O; O; I; I] |
<Instruct>: Given the context 'We studied seasonal dynamics in delta^1^3C of CO2 efflux (delta^1^3C(E)) from non-leafy branches, upper and lower trunks and coarse roots of adult trees, comparing deciduous Fagus sylvatica (European beech) with evergreen Picea abies (Norway spruce).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fagus sylvatica; european beech; picea abies; norway spruce]
<Options>: A: fagus sylvestris (aka fagus sylvatica)
B: sitta europaea (wood nuthatch) (aka sitta europaea)
C: red spruce (aka picea rubens)
D: beechdrops (aka epifagus virginiana)
E: fagus betuloides (aka nothofagus betuloides)
F: picea lowiana (aka abies lowiana)
G: beech trees (aka fagus)
H: fagus x moesiaca (aka fagus taurica)
I: picea abies var. abies
J: spruce pine (aka pinus glabra)
K: fagus nayonica (aka fagus lucida)
L: sargent spruce (aka picea brachytyla)
M: norway spruce (aka picea abies)
N: fagus longipetiolata (fagus brevipetiolata) (aka fagus longipetiolata)
O: norway maple (aka acer platanoides)
P: picea glehnii (abies glehnii) (aka picea glehnii)
Q: european hornbeam (aka carpinus betulus)
R: norway pout (aka trisopterus esmarkii)
S: None of the above. | [A; A; M; M] |
<Instruct>: Given the context 'We studied seasonal dynamics in delta^1^3C of CO2 efflux (delta^1^3C(E)) from non-leafy branches, upper and lower trunks and coarse roots of adult trees, comparing deciduous Fagus sylvatica (European beech) with evergreen Picea abies (Norway spruce).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fagus sylvatica; european beech; picea abies; norway spruce]
<Options>: A: eumea caesar (exorista caesar) (aka eumea caesar)
B: norway pout (aka trisopterus esmarkii)
C: fagus fusca (aka nothofagus fusca)
D: mexican spruce (aka picea mexicana)
E: japanese beech (aka fagus crenata)
F: pinus abies (aka picea abies)
G: fagus betuloides (aka nothofagus betuloides)
H: picea brachytyla (abies brachytyla) (aka picea brachytyla)
I: fagus crenata (japanese beech) (aka fagus crenata)
J: picea glauca (white spruce) (aka picea glauca)
K: beechdrops (aka epifagus virginiana)
L: european beech (aka fagus sylvatica)
M: fagus brevipetiolata (aka fagus longipetiolata)
N: sargent spruce (aka picea brachytyla)
O: picea
P: norway lobster (aka nephrops norvegicus)
Q: picea glehnii (abies glehnii) (aka picea glehnii)
R: alpine birch (aka betula nana)
S: None of the above. | [L; L; F; F] |
<Instruct>: Given the context 'We studied seasonal dynamics in delta^1^3C of CO2 efflux (delta^1^3C(E)) from non-leafy branches, upper and lower trunks and coarse roots of adult trees, comparing deciduous Fagus sylvatica (European beech) with evergreen Picea abies (Norway spruce).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fagus sylvatica; european beech; picea abies; norway spruce]
<Options>: A: norway spruce (aka picea abies)
B: fagus sylvestris (aka fagus sylvatica)
C: fagus x moesiaca (aka fagus taurica)
D: european honey bee (aka apis mellifera)
E: fridericia sylvatica
F: fagus crenata (japanese beech) (aka fagus crenata)
G: siberian spruce (aka picea obovata)
H: colorado spruce (aka picea pungens)
I: picea pungens (colorado spruce) (aka picea pungens)
J: rauli beech (aka nothofagus alpina)
K: fagus fusca (aka nothofagus fusca)
L: picea brachytyla (abies brachytyla) (aka picea brachytyla)
M: picea abies var. abies
N: picea mariana (black spruce) (aka picea mariana)
O: red spruce (aka picea rubens)
P: sitta europaea (wood nuthatch) (aka sitta europaea)
Q: picea glehnii (abies glehnii) (aka picea glehnii)
R: fagus nayonica (aka fagus lucida)
S: None of the above. | [B; B; A; A] |
<Instruct>: Given the context 'Gene expression changes during short day induced terminal bud formation in Norway spruce.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [norway spruce]
<Options>: A: norway spruce (aka picea abies)
B: norway lobster (aka nephrops norvegicus)
C: norway pine (aka pinus resinosa)
D: sitka spruce (aka picea sitchensis)
E: spruce pine (aka pinus glabra)
F: None of the above. | [A] |
<Instruct>: Given the context 'By combining suppression subtractive hybridization and monitoring of gene expression by qRT-PCR analysis, we aimed to identify genes involved in photoperiodic control of growth cessation and bud set in Norway spruce.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [norway spruce]
<Options>: A: european sprat (aka sprattus sprattus)
B: norway spruce (aka picea abies)
C: mexican spruce (aka picea mexicana)
D: blue spruce (aka picea pungens)
E: sitka spruce (aka picea sitchensis)
F: None of the above. | [B] |
<Instruct>: Given the context 'Role of nitric oxide in hydrogen peroxide-dependent induction of abiotic stress tolerance by brassinosteroids in cucumber.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cucumber]
<Options>: A: cuculus lucidus (aka chrysococcyx lucidus)
B: cucumis carolinus
C: cucumis melo (oriental melon) (aka cucumis melo)
D: cucumis sativus (cucumbers) (aka cucumis sativus)
E: cucumis globosus
F: None of the above. | [D] |
<Instruct>: Given the context 'Brassinosteroids (BRs) can induce plant tolerance to a variety of abiotic stresses by triggering the generation of H(2) O(2) as a signalling molecule in cucumber leaves.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cucumber]
<Options>: A: silky cucumber (aka chiridota laevis)
B: cucumbers (aka cucumis sativus)
C: cucumis
D: cucumis figarei (aka cucumis pustulatus)
E: cuculus lucidus (aka chrysococcyx lucidus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Brassinosteroids (BRs) can induce plant tolerance to a variety of abiotic stresses by triggering the generation of H(2) O(2) as a signalling molecule in cucumber leaves.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cucumber]
<Options>: A: cuculus lucidus (aka chrysococcyx lucidus)
B: silky cucumber (aka chiridota laevis)
C: cucumis figarei (aka cucumis pustulatus)
D: cucumis
E: None of the above. | [E] |
<Instruct>: Given the context 'Genome-wide analysis of brain transcriptional changes in honey bee (Apis mellifera L.) queens exposed to carbon dioxide and physical manipulation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [honey bee; apis mellifera]
<Options>: A: common honeybee (aka apis mellifera ligustica)
B: bee (aka apis mellifera) (aka apis mellifera)
C: oriental honeybee (aka apis cerana)
D: honey bees (aka apinae)
E: giant honeybee (aka apis dorsata)
F: apis terrestris (aka bombus terrestris)
G: apis cerana (apis mellifera cerana) (aka apis cerana)
H: apis mellifera mellifera (german honeybee) (aka apis mellifera mellifera)
I: None of the above. | [B; B] |
<Instruct>: Given the context 'Genome-wide analysis of brain transcriptional changes in honey bee (Apis mellifera L.) queens exposed to carbon dioxide and physical manipulation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [honey bee; apis mellifera]
<Options>: A: honey bees (aka apinae)
B: rock honeybee (aka apis dorsata)
C: eastern honeybee (aka apis cerana)
D: apis terrestris (aka bombus terrestris)
E: african honeybee (aka apis mellifera scutellata)
F: giant honeybee (aka apis dorsata)
G: bee (aka apis mellifera) (aka apis mellifera)
H: apis mellifera mellifera (german honeybee) (aka apis mellifera mellifera)
I: apis mellifera caucasica (caucasian honeybee) (aka apis mellifera caucasica)
J: None of the above. | [G; G] |
<Instruct>: Given the context 'In the present study we examine the effects of CO(2) (a commonly used anaesthetic in instrumental insemination that causes changes similar to those occurring after mating) and physical manipulation (which may mimic certain aspects of copulation) on the behavioural, physiological and brain transcriptional changes in honey bee queens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [honey bee]
<Options>: A: apis mellifera mellifera (german honeybee) (aka apis mellifera mellifera)
B: common honeybee (aka apis mellifera ligustica)
C: african honeybee (aka apis mellifera scutellata)
D: little honeybee (aka apis florea)
E: apis mellifera (bee (aka apis mellifera))
F: None of the above. | [E] |
<Instruct>: Given the context 'Comparisons with previous studies of honey bees and female Drosophila indicate that common molecular mechanisms may be responsible for regulating reproductive changes across different mating regimes and insect orders.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [honey bees; drosophila]
<Options>: A: oriental honeybee (aka apis cerana)
B: drosophila melanogaster (sophophora melanogaster) (aka drosophila melanogaster)
C: drosophila (dudaica) dissimilis (aka drosophila dissimilis)
D: african honeybee (aka apis mellifera scutellata)
E: german honeybee (aka apis mellifera mellifera)
F: rock honeybee (aka apis dorsata)
G: drosophila persimilis
H: drosophila elegans
I: western honey bee (aka apis mellifera)
J: melanogaster (aka melanogaster <flies>)
K: None of the above. | [I; B] |
<Instruct>: Given the context 'Comparisons with previous studies of honey bees and female Drosophila indicate that common molecular mechanisms may be responsible for regulating reproductive changes across different mating regimes and insect orders.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [honey bees; drosophila]
<Options>: A: little honeybee (aka apis florea)
B: apis mellifera mellifera (german honeybee) (aka apis mellifera mellifera)
C: african honeybee (aka apis mellifera scutellata)
D: common honey bee (aka apis mellifera ligustica)
E: drosophila dissimilis (drosophila (dudaica) dissimilis) (aka drosophila dissimilis)
F: drosophila (aka drosophila <basidiomycete fungi>)
G: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
H: drosophila <flies,subgenus> (drosophila) (aka drosophila <flies,subgenus>)
I: drosophila melanogaster (sophophora melanogaster) (aka drosophila melanogaster)
J: european honey bee (aka apis mellifera)
K: None of the above. | [J; I] |
<Instruct>: Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [agrobacterium tumefasciens; blastocladiella emersonii; agrobacterium tumefaciens; yeast]
<Options>: A: saccharomyces marxianus (aka kluyveromyces marxianus)
B: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
C: agrobacterium vaccinii
D: torulaspora lactis (aka kluyveromyces lactis)
E: agrobacterium tumefaciens (strain apple 185)
F: blastocladia pringsheimii
G: saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (aka saccharomyces cerevisiae)
H: pseudomonas tumefaciens (aka agrobacterium tumefaciens)
I: blastocladia ramosa
J: agrobacterium divergens
K: agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980) (aka rhizobium rhizogenes)
L: saccharomyces rouxii (aka zygosaccharomyces rouxii)
M: blastocladiella emersonii
N: agrobacterium agile
O: 'agrobacterium aurantiacum' (aka agrobacterium aurantiacum)
P: paphiopedilum emersonii
Q: agrobacterium pusense (rhizobium pusense) (aka agrobacterium pusense)
R: chlorella emersonii (aka graesiella emersonii)
S: None of the above. | [H; M; H; G] |
<Instruct>: Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [agrobacterium tumefasciens; blastocladiella emersonii; agrobacterium tumefaciens; yeast]
<Options>: A: saccharomyces marxianus (aka kluyveromyces marxianus)
B: blastobasis luteella
C: saccharomyces globosus (aka saccharomyces uvarum)
D: saccharomyces fermentati (aka torulaspora delbrueckii)
E: saccharomyces oviformis (aka saccharomyces cerevisiae)
F: blastocladiella emersonii
G: phytomonas tumefaciens (aka agrobacterium tumefaciens)
H: agrobacterium leguminum
I: agrobacterium vaccinii
J: 'agrobacterium aurantiacum' (aka agrobacterium aurantiacum)
K: blastocladia pringsheimii
L: agrobacterium radiobacter (agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980)) (aka agrobacterium radiobacter)
M: agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980) (aka rhizobium rhizogenes)
N: agrobacterium pusense (rhizobium pusense) (aka agrobacterium pusense)
O: agrobacterium aurantiacum ('agrobacterium aurantiacum') (aka agrobacterium aurantiacum)
P: agrobacterium divergens
Q: lomatium donnellii
R: saccharomyces rouxii (aka zygosaccharomyces rouxii)
S: paphiopedilum emersonii
T: None of the above. | [G; F; G; E] |
<Instruct>: Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [agrobacterium tumefasciens; blastocladiella emersonii; agrobacterium tumefaciens; yeast]
<Options>: A: agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980) (aka rhizobium rhizogenes)
B: saccharomyces hansenii (aka debaryomyces hansenii)
C: saccharomyces italicus (aka saccharomyces cerevisiae)
D: agrobacterium fabacearum (aka agrobacterium tumefaciens)
E: agrobacterium agile
F: agrobacterium tumefaciens (strain apple 185)
G: agrobacterium vaccinii
H: saccharomyces rouxii (aka zygosaccharomyces rouxii)
I: blastobasis luteella
J: agrobacterium radiobacter (agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980)) (aka agrobacterium radiobacter)
K: blastocladiella emersonii
L: saccharomyces globosus (aka saccharomyces uvarum)
M: agrobacterium tumefaciens (strain b2a)
N: blastocladiella simplex
O: chlorella emersonii (aka graesiella emersonii)
P: saccharomycodes
Q: rhizobium rhizogenes (agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980)) (aka rhizobium rhizogenes)
R: agrobacterium pusense (rhizobium pusense) (aka agrobacterium pusense)
S: columbicola emersoni
T: None of the above. | [D; K; D; C] |
<Instruct>: Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [agrobacterium tumefasciens; blastocladiella emersonii; agrobacterium tumefaciens; yeast]
<Options>: A: sideroxyarcus emersonii
B: paphiopedilum emersonii
C: blastocladiella simplex
D: saccharomyces globosus (aka saccharomyces uvarum)
E: saccharomyces marxianus (aka kluyveromyces marxianus)
F: blastobasis luteella
G: blastocladiella emersonii
H: agrobacterium tumefaciens genomovar g8 (aka agrobacterium fabrum)
I: agrobacterium tumefaciens (strain apple 185)
J: saccharomycodes
K: agrobacterium leguminum
L: saccharomyces oviformis (aka saccharomyces cerevisiae)
M: agrobacterium fabacearum (aka agrobacterium tumefaciens)
N: agrobacterium divergens
O: agrobacterium pusense (rhizobium pusense) (aka agrobacterium pusense)
P: agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980) (aka rhizobium rhizogenes)
Q: saccharomyces drosophilarum (aka kluyveromyces lactis)
R: agrobacterium agile
S: None of the above. | [M; G; M; L] |
<Instruct>: Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: sphaeria humana (aka sordaria humana)
B: pediculus humanus (human louse) (aka pediculus humanus)
C: human (aka homo sapiens)
D: human body louse (aka pediculus humanus corporis)
E: macrobiotus sapiens
F: None of the above. | [C] |
<Instruct>: Given the context 'Using this technique, we developed the first transformation protocol for the saprobic aquatic fungus Blastocladiella emersonii, a Blastocladiomycete localized at the base of fungal phylogenetic tree, which has been shown as a promising and interesting model of study of cellular function and differentiation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [blastocladiella emersonii]
<Options>: A: paphiopedilum emersonii
B: blastobasis luteella
C: blastocladiella emersonii
D: blastocladia ramosa
E: blastobotrys meliponae
F: None of the above. | [C] |
<Instruct>: Given the context 'We constructed binary T-DNA vectors containing hygromycin phosphotransferase (hph) or enhanced green fluorescent protein (egfp) genes, under the control of Aspergillus nidulans trpC promoter and terminator sequences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans]
<Options>: A: aphanothece nidulans
B: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
C: aspergillus cerealis
D: nassella nidulans
E: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
F: None of the above. | [E] |
<Instruct>: Given the context '24 h of co-cultivation in induction medium (IM) agar plates, followed by transfer to PYG-agar plates containing cefotaxim to kill Agrobacterium tumefsciens and hygromycin to select transformants, resulted in growth and sporulation of resistant transformants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [agrobacterium tumefsciens]
<Options>: A: rhizobium rhizogenes (agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980)) (aka rhizobium rhizogenes)
B: agrobacterium fabacearum (aka agrobacterium tumefaciens)
C: 'agrobacterium aurantiacum' (aka agrobacterium aurantiacum)
D: agrobacterium pusense (rhizobium pusense) (aka agrobacterium pusense)
E: agrobacterium divergens
F: None of the above. | [B] |
<Instruct>: Given the context 'Heterotrimeric Galpha protein Pga1 from Penicillium chrysogenum triggers germination in response to carbon sources and affects negatively resistance to different stress conditions.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [penicillium chrysogenum]
<Options>: A: penicillium harmonense
B: penicillium chrysogenum thom, 1910 (aka penicillium chrysogenum)
C: penicillium citrinum
D: penicillium toxicarium
E: penicillium janthogenum
F: None of the above. | [B] |
<Instruct>: Given the context 'Heterotrimeric Galpha protein Pga1 from Penicillium chrysogenum triggers germination in response to carbon sources and affects negatively resistance to different stress conditions.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [penicillium chrysogenum]
<Options>: A: penicillium harmonense
B: penicillium citrinum
C: penicillium toxicarium
D: penicillium janthogenum
E: None of the above. | [E] |
<Instruct>: Given the context 'Heterotrimeric Galpha protein Pga1 of Penicillium chrysogenum controls vegetative growth, conidiation and secondary metabolite production.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [penicillium chrysogenum]
<Options>: A: penicillium acidogenicum
B: penicillium sicoris
C: penicillium flavum
D: penicillium chrysogenum (penicillium chrysogenum var. chrysogenum) (aka penicillium chrysogenum)
E: penicillium janthogenum
F: None of the above. | [D] |
<Instruct>: Given the context 'Strains G203R-T (expressing the dominant inactivating pga1(G203R) allele) and Deltapga1 (deleted pga1) showed a delayed and asynchronic germination pattern, and a decrease in the percentage of germination, which occurred in only 70-80% of the total conidia.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [strains g203r-t; deltapga1]
<Options>: A: bacterium g3
B: allelic replacement vector pdg1
C: bacterium t300
D: poga
E: rhodopseudomonas thermotolerans
F: expression vector pxgwa
G: bacterium g2
H: gammaproteobacteria bacterium rta03s
I: dagda
J: gyponana delta (aka planipona delta)
K: None of the above. | [K; K] |
<Instruct>: Given the context 'Strains G203R-T (expressing the dominant inactivating pga1(G203R) allele) and Deltapga1 (deleted pga1) showed a delayed and asynchronic germination pattern, and a decrease in the percentage of germination, which occurred in only 70-80% of the total conidia.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [strains g203r-t; deltapga1]
<Options>: A: expression vector plgfp_delta_1
B: vector pkf-deltaapd
C: deltaria
D: allelic replacement vector pdg1
E: pagla
F: bacterium hr23
G: bacterium t300
H: bacterium g200vi
I: bacterium g3
J: bacterium g21
K: None of the above. | [K; K] |
<Instruct>: Given the context 'In addition, strains with the pga1(G42R) allele were able to bypass the carbon source (glucose or sucrose) requirement for germination in about 64% of conidia.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [strains with the pga1(g42r) allele]
<Options>: A: 'paenibacillus ginsengagri' (aka paenibacillus ginsengagri)
B: actinomyces glycerinitolerans
C: gluconobacter vitians
D: gallaecimonas pentaromativorans
E: paenibacillus graminis
F: None of the above. | [F] |
<Instruct>: Given the context 'Regulation of germination by Pga1 is probably mediated by cAMP, as intracellular levels of this secondary messenger undergo a peak before the onset of germination only in strains with an active Pga1.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [strains with an active pga1]
<Options>: A: paenibacillus hominis (aka candidatus paenibacillus hominis)
B: paeniglutamicibacter antarcticus (arthrobacter antarcticus) (aka paeniglutamicibacter antarcticus)
C: paeniglutamicibacter
D: gallaecimonas pentaromativorans
E: paenibacillus campinasensis
F: None of the above. | [F] |
<Instruct>: Given the context 'Characterizing the role of RNA silencing components in Cryptococcus neoformans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cryptococcus neoformans]
<Options>: A: cryptococcus neoformans bt1
B: filobasidiella neoformans (aka cryptococcus neoformans)
C: cryptococcus neoformans c23
D: cryptococcus gattii (vanbreus. & takashio) kwon-chung & boekhout 2002 (aka cryptococcus gattii)
E: cryptococcus neoformans serotype d (aka cryptococcus neoformans var. neoformans)
F: None of the above. | [B] |
<Instruct>: Given the context 'To elucidate the physiological functions of the RNAi pathway in Cryptococcus neoformans that causes fungal meningitis, here we performed genetic analyses for genes encoding Argonaute (AGO1 and AGO2), RNA-dependent RNA polymerase (RDP1), and Dicers (DCR1 and DCR2) in both serotype A and D C. neoformans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cryptococcus neoformans; c. neoformans]
<Options>: A: cryptococcus neoformans var. neoformans (filobasidiella neoformans var. neoformans) (aka cryptococcus neoformans var. neoformans)
B: cryptococcus neoformans var. gattii (aka cryptococcus gattii)
C: cryptococcus neoformans bt2
D: cryptococcus neoformans bt68
E: cryptococcus neoformans bt19
F: cryptococcus neoformans bt1
G: cryptococcus neoformans species complex
H: filobasidiella neoformans var. neoformans (aka cryptococcus neoformans var. neoformans)
I: blastomyces neoformans (aka cryptococcus neoformans)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'To elucidate the physiological functions of the RNAi pathway in Cryptococcus neoformans that causes fungal meningitis, here we performed genetic analyses for genes encoding Argonaute (AGO1 and AGO2), RNA-dependent RNA polymerase (RDP1), and Dicers (DCR1 and DCR2) in both serotype A and D C. neoformans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cryptococcus neoformans; c. neoformans]
<Options>: A: cryptococcus neoformans species complex
B: cryptococcus neoformans var. gattii (aka cryptococcus gattii)
C: cryptococcus neoformans bt1
D: filobasidiella neoformans var. neoformans (aka cryptococcus neoformans var. neoformans)
E: cryptococcus neoformans bt68
F: cryptococcus neoformans bt2
G: cryptococcus neoformans var. neoformans (filobasidiella neoformans var. neoformans) (aka cryptococcus neoformans var. neoformans)
H: cryptococcus neoformans bt19
I: None of the above. | [I; I] |
<Instruct>: Given the context 'To elucidate the physiological functions of the RNAi pathway in Cryptococcus neoformans that causes fungal meningitis, here we performed genetic analyses for genes encoding Argonaute (AGO1 and AGO2), RNA-dependent RNA polymerase (RDP1), and Dicers (DCR1 and DCR2) in both serotype A and D C. neoformans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cryptococcus neoformans; c. neoformans]
<Options>: A: cryptococcus gattii (cryptococcus gattii (vanbreus. & takashio) kwon-chung & boekhout 2002) (aka cryptococcus gattii)
B: cryptococcus neoformans species complex
C: filobasidiella neoformans kwon-chung, 1976 (aka cryptococcus neoformans)
D: cryptococcus neoformans bt2
E: cryptococcus neoformans bt7
F: cryptococcus neoformans serotype d (aka cryptococcus neoformans var. neoformans)
G: cryptococcus neoformans c23
H: cryptococcus neoformans bt1
I: None of the above. | [C; C] |
<Instruct>: Given the context 'The present study shows that Ago1, Rdp1, and Dcr2 are the major components of the RNAi process occurring in C. neoformans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. neoformans]
<Options>: A: cryptococcus neoformans bt19
B: cryptococcus neoformans bt2
C: cryptococcus neoformans bt7
D: saccharomyces neoformans (aka cryptococcus neoformans)
E: cryptococcus neoformans bt1
F: None of the above. | [D] |
<Instruct>: Given the context 'Notably, the serotype D rdp1Delta mutants showed an increase in transcript abundance of active retrotransposons and transposons, such as T2 and T3, the latter of which is a novel serotype D-specific transposon of C. neoformans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. neoformans]
<Options>: A: cryptococcus neoformans serotype d (aka cryptococcus neoformans var. neoformans)
B: filobasidiella neoformans kwon-chung, 1976 (aka cryptococcus neoformans)
C: cryptococcus neoformans bt1
D: cryptococcus neoformans bt68
E: cryptococcus neoformans species complex
F: None of the above. | [B] |
<Instruct>: Given the context 'In conclusion, the RNAi pathway plays an important role in controlling transposon activity and genome integrity of C. neoformans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. neoformans]
<Options>: A: cryptococcus neoformans serotype d (aka cryptococcus neoformans var. neoformans)
B: cryptococcus neoformans bt7
C: cryptococcus neoformans bt2
D: blastomyces neoformans (aka cryptococcus neoformans)
E: cryptococcus neoformans species complex
F: None of the above. | [D] |
<Instruct>: Given the context 'Characterization of the oxysterol-binding protein gene family in the yellow fever mosquito, Aedes aegypti.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yellow fever mosquito; aedes aegypti]
<Options>: A: culex orientalis
B: culex ochraceus (aka aedes ochraceus)
C: culex alboannulatus (aka aedes alboannulatus)
D: culex japonicus (aka aedes japonicus)
E: culex aegypti (aka aedes aegypti)
F: aedes flavopictus
G: aedes rossicus
H: aedes fluviatilis (aka ochlerotatus fluviatilis)
I: aedes flavivirus
J: None of the above. | [E; E] |
<Instruct>: Given the context 'Characterization of the oxysterol-binding protein gene family in the yellow fever mosquito, Aedes aegypti.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yellow fever mosquito; aedes aegypti]
<Options>: A: aedes albopictus (asian tiger mosquito) (aka aedes albopictus)
B: culex japonicus (aka aedes japonicus)
C: culex atropalpus (aka aedes atropalpus)
D: culex malayi (aedes malayi) (aka culex malayi)
E: aedes fluviatilis (aka ochlerotatus fluviatilis)
F: culex aegypti (aka aedes aegypti)
G: yellow fever virus yfv (aka yellow fever virus)
H: aedes malayi (aka culex malayi)
I: culex tarsalis
J: None of the above. | [F; F] |
<Instruct>: Given the context 'Four ORP genes were cloned from Aedes aegypti.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aedes aegypti]
<Options>: A: aedes flavivirus
B: culex atropalpus (aka aedes atropalpus)
C: culex alboannulatus (aka aedes alboannulatus)
D: aedes aegypti (aedes (stegomyia) aegypti) (aka aedes aegypti)
E: culex niveus (aka aedes niveus)
F: None of the above. | [D] |
<Instruct>: Given the context 'Four ORP genes were cloned from Aedes aegypti.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aedes aegypti]
<Options>: A: culex alboannulatus (aka aedes alboannulatus)
B: culex atropalpus (aka aedes atropalpus)
C: culex niveus (aka aedes niveus)
D: aedes flavivirus
E: None of the above. | [E] |
<Instruct>: Given the context 'Based on amino acid sequence homology to human proteins, they are AeOSBP, AeORP1, AeORP8 and AeORP9.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: neandertal (aka homo sapiens neanderthalensis)
B: human (aka homo sapiens)
C: humans (aka homo)
D: sphaeria humana (aka sordaria humana)
E: glossus humanus (cardium humanum) (aka glossus humanus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Furthermore, over-expression of AeORPs facilitated [(3)H]-cholesterol uptake in Ae. aegypti cultured Aag -2 cells.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ae. aegypti]
<Options>: A: aedes flavopictus
B: culex aegypti aegypti (aka aedes aegypti aegypti)
C: culex malayi (aedes malayi) (aka culex malayi)
D: culex alboannulatus (aka aedes alboannulatus)
E: aedes (stegomyia) aegypti (aka aedes aegypti)
F: None of the above. | [E] |
<Instruct>: Given the context 'Activation and localization of protein kinase C in Neurospora crassa.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [neurospora crassa]
<Options>: A: neurospora uniporata
B: amyloporiella crassa (aka resinoporia crassa)
C: neurospora tetraspora (gelasinospora tetrasperma) (aka neurospora tetraspora)
D: chrysonilia crassa (aka neurospora crassa)
E: columnea crassa
F: None of the above. | [D] |
<Instruct>: Given the context 'The Neurosporacrassa protein kinase C (NPKC) is reported to be a regulator of light responsive genes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [neurosporacrassa]
<Options>: A: neurospora
B: neurospora crassa (chrysonilia crassa) (aka neurospora crassa)
C: neurospora intermedia
D: neurospora cratophora (gelasinospora cratophora) (aka neurospora cratophora)
E: neurospora terricola
F: None of the above. | [B] |
<Instruct>: Given the context 'Identification and expression analysis of the genes involved in serotonin biosynthesis and transduction in the field cricket Gryllus bimaculatus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [gryllus bimaculatus]
<Options>: A: spermophagus bimaculatus
B: two-spotted cricket (aka gryllus bimaculatus)
C: gryllus variegatus (aka zonocerus variegatus)
D: fulvius bimaculatus
E: gryllus multipulsator
F: None of the above. | [B] |
<Instruct>: Given the context 'To elucidate the molecular basis of the cricket 5-HT system, we identified 5-HT-related genes in the field cricket Gryllus bimaculatus DeGeer.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [gryllus bimaculatus degeer]
<Options>: A: gryllus armatus
B: gryllus bivittatus (aka melanoplus bivittatus)
C: gryllus assimilis (acheta assimilis) (aka gryllus assimilis)
D: two-spotted cricket (aka gryllus bimaculatus)
E: gryllus rubens
F: None of the above. | [D] |
<Instruct>: Given the context 'This has already led to the activation of silent gene clusters and the identification of novel compounds in Aspergillus nidulans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans]
<Options>: A: emericella nidulans (aka aspergillus nidulans)
B: aspergillus cerealis
C: aspergillus aureus
D: aspergillus lanosus
E: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Certain Fusarium species cause head blight of wheat and other small grains worldwide and produce trichothecene mycotoxins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: common wheat (aka triticum aestivum)
B: triticum peregrinum (aka aegilops peregrina)
C: cone wheat (aka triticum turgidum)
D: wild emmer wheat (aka triticum dicoccoides)
E: triticum
F: None of the above. | [A] |
<Instruct>: Given the context 'These mycotoxins can induce toxicoses in animals and humans and can contribute to the ability of some fusaria to cause plant disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: neandertal man (aka homo sapiens neanderthalensis)
C: gymnopleurus humanus
D: glossus humanus (cardium humanum) (aka glossus humanus)
E: macrobiotus sapiens
F: None of the above. | [A] |
<Instruct>: Given the context 'Functional analyses of the TRI8 enzyme (Tri8) in F. graminearum, the predominant cause of wheat head blight in North America and Europe, revealed that Tri8 from 3-ADON strains catalyzes deacetylation of the trichothecene biosynthetic intermediate 3,15-diacetyldeoxynivalenol at carbon 15 to yield 3-ADON, whereas Tri8 from 15-ADON strains catalyzes deacetylation of 3,15-diacetyldeoxynivalenol at carbon 3 to yield 15-ADON.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [f. graminearum]
<Options>: A: fusarium praegraminearum
B: fusarium moniliforme (aka fusarium verticillioides)
C: gibberella zeae (aka fusarium graminearum)
D: fusarium magnum
E: fusarium pseudograminearum
F: None of the above. | [C] |
<Instruct>: Given the context 'Functional analyses of the TRI8 enzyme (Tri8) in F. graminearum, the predominant cause of wheat head blight in North America and Europe, revealed that Tri8 from 3-ADON strains catalyzes deacetylation of the trichothecene biosynthetic intermediate 3,15-diacetyldeoxynivalenol at carbon 15 to yield 3-ADON, whereas Tri8 from 15-ADON strains catalyzes deacetylation of 3,15-diacetyldeoxynivalenol at carbon 3 to yield 15-ADON.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [f. graminearum]
<Options>: A: fusarium magnum
B: fusarium pseudograminearum
C: fusarium praegraminearum
D: fusarium moniliforme (aka fusarium verticillioides)
E: None of the above. | [E] |
<Instruct>: Given the context 'The recombinase IntA is required for excision of esp-containing ICEEfm1 in Enterococcus faecium.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [enterococcus faecium]
<Options>: A: enterococcus villorum (enterococcus porcinus) (aka enterococcus villorum)
B: enterococcus faecium e155
C: enterococcus avium (streptococcus avium) (aka enterococcus avium)
D: enterococcus plantarum
E: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
F: None of the above. | [E] |
<Instruct>: Given the context 'Comparative genome analysis of Enterococcus faecium recently revealed that a genomic island containing the esp gene, referred to as the esp-containing pathogenicity island (esp PAI), can be transferred by conjugation and contains a partial Tn916-like element and an integrase gene, intA. Here, we characterize the role of intA in the excision of the esp PAI.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [enterococcus faecium]
<Options>: A: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
B: enterococcus faecium e155
C: enterococcus plantarum
D: enterococcus
E: bacteroides faecium
F: None of the above. | [A] |
<Instruct>: Given the context 'An intA insertion-deletion mutant in E. faecium E1162 (E1162DeltaintA) was constructed and in trans complemented with wild-type intA (E1162DeltaintA::pEF30).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. faecium e1162; e1162]
<Options>: A: bryophaenocladius aestivus (eudactylocladius aestivus) (aka bryophaenocladius aestivus)
B: enterococcus faecium vre1261
C: lacerta erhardii amorgensis (aka podarcis erhardii amorgensis)
D: enterococcus faecium erv168
E: enterococcus faecium r446
F: streptococcus faecium (aka enterococcus faecium)
G: enterococcus faecium engen0375
H: escherichia coli e1114
I: arctic sea ice bacterium ark10162
J: egretta novaehollandiae (ardea novoe hollandioe) (aka egretta novaehollandiae)
K: None of the above. | [F; F] |
<Instruct>: Given the context 'An intA insertion-deletion mutant in E. faecium E1162 (E1162DeltaintA) was constructed and in trans complemented with wild-type intA (E1162DeltaintA::pEF30).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. faecium e1162; e1162]
<Options>: A: enterococcus faecium erv161
B: enterococcus faecium e422
C: burkholderiales bacterium e111
D: egretta novaehollandiae (ardea novoe hollandioe) (aka egretta novaehollandiae)
E: arctic sea ice bacterium ark10162
F: aphaenogaster juliana (aka veromessor julianus)
G: streptococcus faecium (aka enterococcus faecium)
H: escherichia coli e1114
I: enterococcus faecium engen0377
J: enterococcus faecium e525
K: None of the above. | [G; G] |
<Instruct>: Given the context 'No CI were detected in E1162DeltaintA, while in the complemented strain E1162DeltaintA::pEF30 CI formation was restored, indicating that intA is essential for excision and subsequent mobilization of the esp-containing genomic island in E. faecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. faecium]
<Options>: A: enterococcus plantarum
B: endobacterium cereale (endobacterium cereale corrig.) (aka endobacterium cereale)
C: enterococcus faecium e155
D: sphingobacterium faecium
E: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
F: None of the above. | [E] |
<Instruct>: Given the context 'Thermal performance curves of Paramecium caudatum: a model selection approach.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [paramecium caudatum]
<Options>: A: paramecium
B: poterium caudatum (aka bencomia caudata)
C: paramecium caudatum
D: pleioplectron caudatum
E: arthrocladium caudatum
F: None of the above. | [C] |
<Instruct>: Given the context 'In this study, temperature reaction norms of natural isolates of the freshwater protist Paramecium caudatum were investigated, considering nearly the entire temperature range.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [paramecium caudatum]
<Options>: A: paramecium caudatum
B: paramecium aurelia
C: paramecium chlorelligerum
D: pythium caudatum (lagenidium caudatum g.l. barron 1976) (aka pythium caudatum)
E: diplazium caudatum
F: None of the above. | [A] |
<Instruct>: Given the context 'Relating the physical properties of Pseudomonas aeruginosa lipopolysaccharides to virulence by atomic force microscopy.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa]
<Options>: A: pseudomonas rugosa (aka pseudomonas putida)
B: pasteurella pestis (aka yersinia pestis)
C: pseudomonas aeruginosa pa1
D: pseudomonas oryzae
E: pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980)) (aka pseudomonas aeruginosa)
F: None of the above. | [E] |
<Instruct>: Given the context 'Relating the physical properties of Pseudomonas aeruginosa lipopolysaccharides to virulence by atomic force microscopy.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa]
<Options>: A: pseudomonas oryzae
B: pasteurella pestis (aka yersinia pestis)
C: pseudomonas rugosa (aka pseudomonas putida)
D: pseudomonas aeruginosa pa1
E: None of the above. | [E] |
<Instruct>: Given the context 'Lipopolysaccharides (LPS) are an important class of macromolecules that are components of the outer membrane of Gram-negative bacteria such as Pseudomonas aeruginosa.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa]
<Options>: A: pseudomonas polycolor (aka pseudomonas aeruginosa)
B: pseudomonas wisconsinensis ('pseudomonas wisconsinensis') (aka pseudomonas wisconsinensis)
C: pseudomonas paralactis
D: pseudomonas aeruginosa c
E: pseudomonas aeruginosa pa1
F: None of the above. | [A] |
<Instruct>: Given the context 'P. aeruginosa contains two different sugar chains, the homopolymer common antigen (A band) and the heteropolymer O antigen (B band), which impart serospecificity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. aeruginosa]
<Options>: A: pasteurella
B: bacterium pyocyaneum (aka pseudomonas aeruginosa)
C: pseudomonas aeruginosa c
D: pasteuria
E: pasteurella pestis (aka yersinia pestis)
F: None of the above. | [B] |
<Instruct>: Given the context 'Here we used atomic force microscopy (AFM) to probe the physical properties of the LPS of P. aeruginosa strain PA103 (serogroup O11) in situ.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. aeruginosa strain pa103]
<Options>: A: pseudomonas pyocyanea (aka pseudomonas aeruginosa)
B: pseudomonas aeruginosa pao581
C: pseudomonas aeruginosa 19660
D: pseudomonas aeruginosa pa1
E: pseudomonas aeruginosa strain pa14 (aka pseudomonas aeruginosa pa14)
F: None of the above. | [A] |
<Instruct>: Given the context 'Adhesion forces were not correlated with LPS length, but a relationship between adhesion force and bacterial pathogenicity was found in a mouse acute pneumonia model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mouse]
<Options>: A: mus terricolor (earth-colored mouse) (aka mus terricolor)
B: mus musculus (house mouse) (aka mus musculus)
C: mus musculus castaneus (southeastern asian house mouse) (aka mus musculus castaneus)
D: mouse (aka mus <genus>)
E: mus famulus (servant mouse) (aka mus famulus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Our research contributes to further understanding of the role of LPS in the adhesion and virulence of P. aeruginosa.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. aeruginosa]
<Options>: A: pseudomonas nosocomialis (aka stutzerimonas nosocomialis)
B: pasteurella
C: pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980)) (aka pseudomonas aeruginosa)
D: pasteurella pseudotuberculosis (aka yersinia pseudotuberculosis)
E: [pasteurella] aerogenes (pasteurella aerogenes) (aka [pasteurella] aerogenes)
F: None of the above. | [C] |
<Instruct>: Given the context 'The minor pilin subunit Sgp2 is necessary for assembly of the pilus encoded by the srtG cluster of Streptococcus suis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcus suis]
<Options>: A: streptococcus intestinalis (aka streptococcus alactolyticus)
B: streptococcus parasuis
C: streptococcus pasteuri ('streptococcus pasteuri') (aka streptococcus pasteuri)
D: streptococcus suis
E: streptococcus infantis
F: None of the above. | [D] |
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