instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'Since there are conflicting opinions regarding the host specificity of CaPVs, particularly for goatpox and sheeppox viruses, the development of rapid genotyping tools will facilitate more accurate disease diagnosis and surveillance for better management of capripox outbreaks.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [goatpox; sheeppox viruses]
<Options>: A: monkey pox virus (aka monkeypox virus)
B: goatpox virus fz
C: cpxv (aka cowpox virus) (aka cowpox virus)
D: avipoxvirus
E: horsepox virus
F: pediculus bovis (aka bovicola bovis)
G: vigna unguiculata (phaseolus unguiculatus) (aka vigna unguiculata)
H: goatpox virus
I: sheeppox virus a
J: sheeppox virus (sppv (aka sheeppox virus))
K: None of the above. | [H; J] |
<Instruct>: Given the context 'Since there are conflicting opinions regarding the host specificity of CaPVs, particularly for goatpox and sheeppox viruses, the development of rapid genotyping tools will facilitate more accurate disease diagnosis and surveillance for better management of capripox outbreaks.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [goatpox; sheeppox viruses]
<Options>: A: pediculus bovis (aka bovicola bovis)
B: goatpox virus fz
C: sheep pox virus (aka sheeppox virus)
D: goatpox virus dessei
E: fowl poxvirus (aka fowlpox virus)
F: sheeppox virus a
G: goatpox virus
H: swinepox virus
I: rabbitpox virus
J: None of the above. | [G; C] |
<Instruct>: Given the context 'Multiplex PCR for rapid detection of serotype A foot-and-mouth disease virus variants with amino acid deletion at position 59 of the capsid protein VP3.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [serotype a foot-and-mouth disease virus]
<Options>: A: foot-and-mouth disease virus fmdv (aka foot-and-mouth disease virus)
B: fmdv-o (aka foot-and-mouth disease virus o)
C: foot-and-mouth disease virus a (foot-and-mouth disease virus - type a) (aka foot-and-mouth disease virus a)
D: foot-and-mouth disease virus (strain o1)
E: foot-and-mouth disease virus c (aka foot and mouth disease virus c)
F: None of the above. | [A] |
<Instruct>: Given the context 'In India, there has been co-circulation, extinction and emergence of genotypes/lineages within serotype A foot-and-mouth disease (FMD) virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fmd]
<Options>: A: saffron dwarf virus
B: porcine adenovirus
C: yfv replicon vector fmdv-2a-def
D: fmdv (aka foot-and-mouth disease virus) (aka foot-and-mouth disease virus)
E: drosophila-associated filamentous virus
F: None of the above. | [D] |
<Instruct>: Given the context 'This development is important for surveillance of FMD in India.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fmd]
<Options>: A: foot-and-mouth disease virus (fmdv (aka foot-and-mouth disease virus))
B: foot-and-mouth disease virus (strain o1)
C: yfv replicon vector fmdv-2a-def
D: fmdv-sat1 (aka foot-and-mouth disease virus sat 1)
E: fmdv-c (aka foot and mouth disease virus c)
F: None of the above. | [A] |
<Instruct>: Given the context 'Conserved function of the Kruppel gap gene in the blowfly Lucilia sericata, despite anterior shift of expression.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lucilia sericata]
<Options>: A: sericata sericata
B: sheep blowfly (aka lucilia sericata)
C: sabatinca lucilia
D: brachypodella sericata (aka gyraxis sericata)
E: andrena sericata
F: None of the above. | [B] |
<Instruct>: Given the context 'To determine whether expression patterns of segmentation genes found in Drosophila melanogaster can be scaled to pattern larger insects, we studied the expression of the Kruppel (Kr) gene in the blowfly Lucilia sericata.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [drosophila melanogaster; lucilia sericata]
<Options>: A: amerila serica
B: callogaza sericata (gaza sericata) (aka callogaza sericata)
C: drosophila persimilis
D: drosophila simulans
E: morawetzia sericata
F: scotosia sericata (aka triphosa sericata)
G: bactrocera melanogaster (bactrocera (bactrocera) melanogaster) (aka bactrocera melanogaster)
H: drosophila melanogaster (sophophora melanogaster) (aka drosophila melanogaster)
I: sheep blowfly (aka lucilia sericata)
J: mytilia melanogaster (aka rhinophis melanogaster)
K: None of the above. | [H; I] |
<Instruct>: Given the context 'To determine whether expression patterns of segmentation genes found in Drosophila melanogaster can be scaled to pattern larger insects, we studied the expression of the Kruppel (Kr) gene in the blowfly Lucilia sericata.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [drosophila melanogaster; lucilia sericata]
<Options>: A: drosophila elegans
B: phylica sericea
C: fruit fly (aka drosophila melanogaster)
D: musca sericata (aka lucilia sericata)
E: serica sericea
F: phylica lucida
G: mytilia melanogaster (aka rhinophis melanogaster)
H: sericata sericata
I: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
J: drosophila simulans
K: None of the above. | [C; D] |
<Instruct>: Given the context 'Compared with Drosophila Kr, L. sericata Kr showed an unexpected 10% shift of expression towards the anterior pole.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [drosophila; l. sericata]
<Options>: A: plantago sericea
B: drosophila (aka drosophila <basidiomycete fungi>)
C: leucetta delicata
D: melanogaster (aka melanogaster <flies>)
E: drosophila elegans
F: fruit fly (aka drosophila <flies,genus>)
G: sericata
H: sericata sericata
I: sheep blowfly (aka lucilia sericata)
J: drosophila melanogaster (sophophora melanogaster) (aka drosophila melanogaster)
K: None of the above. | [J; I] |
<Instruct>: Given the context 'Compared with Drosophila Kr, L. sericata Kr showed an unexpected 10% shift of expression towards the anterior pole.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [drosophila; l. sericata]
<Options>: A: drosophila (dudaica) dissimilis (aka drosophila dissimilis)
B: drosophila persimilis
C: fruit fly (aka drosophila melanogaster)
D: fruit flies (aka drosophila <flies,genus>)
E: melaleuca sericea
F: plantago sericea
G: phaenicia sericata (aka lucilia sericata)
H: serica ligulata
I: serica alternata
J: melanogaster <basidiomycete fungi> (melanogaster) (aka melanogaster <basidiomycete fungi>)
K: None of the above. | [C; G] |
<Instruct>: Given the context 'Furthermore, expression domains not found in D. melanogaster were present at the blastoderm stage of L. sericata.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [d. melanogaster; l. sericata]
<Options>: A: litsea sericea
B: drosophila elegans
C: sericata tantilla
D: dipoena melanogaster (atea melanogaster) (aka dipoena melanogaster)
E: drosophila (dudaica) dissimilis (aka drosophila dissimilis)
F: leptospermum sericatum (aka gaudium sericatum)
G: drosophila melanogaster (sophophora melanogaster) (aka drosophila melanogaster)
H: plantago sericea
I: bactrocera melanogaster (bactrocera (bactrocera) melanogaster) (aka bactrocera melanogaster)
J: lucilia sericata (common green bottle fly) (aka lucilia sericata)
K: None of the above. | [G; J] |
<Instruct>: Given the context 'Furthermore, expression domains not found in D. melanogaster were present at the blastoderm stage of L. sericata.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [d. melanogaster; l. sericata]
<Options>: A: serica sericea
B: leptospermum sericatum (aka gaudium sericatum)
C: mytilia melanogaster (aka rhinophis melanogaster)
D: leucetta delicata
E: melaleuca sericea
F: melanogaster <basidiomycete fungi> (melanogaster) (aka melanogaster <basidiomycete fungi>)
G: fruit fly (aka drosophila <flies,genus>)
H: fruit fly (aka drosophila melanogaster)
I: bactrocera melanogaster (bactrocera (bactrocera) melanogaster) (aka bactrocera melanogaster)
J: common green bottle fly (aka lucilia sericata)
K: None of the above. | [H; J] |
<Instruct>: Given the context 'We found Kr phenotypes in L. sericata comparable with those observed in D. melanogaster, demonstrating that L. sericata Kr functions as a gap gene as it does in Drosophila.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. sericata; d. melanogaster; drosophila]
<Options>: A: melaleuca sericea
B: plantago sericea
C: melanogaster <basidiomycete fungi> (melanogaster) (aka melanogaster <basidiomycete fungi>)
D: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
E: sericata sericata
F: bactrocera melanogaster (bactrocera (bactrocera) melanogaster) (aka bactrocera melanogaster)
G: phaenicia sericata (aka lucilia sericata)
H: fruit fly (aka drosophila melanogaster)
I: drosophila <flies,genus> (fruit flies) (aka drosophila <flies,genus>)
J: leptospermum sericatum (aka gaudium sericatum)
K: drosophila <basidiomycete fungi> (drosophila) (aka drosophila <basidiomycete fungi>)
L: drosophila elegans
M: drosophila (aka drosophila <flies,subgenus>)
N: None of the above. | [G; H; H] |
<Instruct>: Given the context 'We found Kr phenotypes in L. sericata comparable with those observed in D. melanogaster, demonstrating that L. sericata Kr functions as a gap gene as it does in Drosophila.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. sericata; d. melanogaster; drosophila]
<Options>: A: drosophila persimilis
B: bactrocera melanogaster (bactrocera (bactrocera) melanogaster) (aka bactrocera melanogaster)
C: drosophila <flies,subgenus> (drosophila) (aka drosophila <flies,subgenus>)
D: serica ligulata
E: drosophila elegans
F: dipoena melanogaster (atea melanogaster) (aka dipoena melanogaster)
G: common green bottle fly (aka lucilia sericata)
H: fruit fly (aka drosophila <flies,genus>)
I: sericata sericata
J: drosophila melanogaster (sophophora melanogaster) (aka drosophila melanogaster)
K: sericata
L: drosophila <basidiomycete fungi> (drosophila) (aka drosophila <basidiomycete fungi>)
M: melanogaster <basidiomycete fungi> (melanogaster) (aka melanogaster <basidiomycete fungi>)
N: litsea sericea
O: None of the above. | [G; J; J] |
<Instruct>: Given the context 'We found Kr phenotypes in L. sericata comparable with those observed in D. melanogaster, demonstrating that L. sericata Kr functions as a gap gene as it does in Drosophila.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. sericata; d. melanogaster; drosophila]
<Options>: A: drosophila (dudaica) dissimilis (aka drosophila dissimilis)
B: drosophila persimilis
C: leptospermum sericatum (aka gaudium sericatum)
D: drosophila simulans
E: phaenicia sericata (aka lucilia sericata)
F: fruit flies (aka drosophila <flies,genus>)
G: melanogaster <basidiomycete fungi> (melanogaster) (aka melanogaster <basidiomycete fungi>)
H: serica atrata
I: drosophila (aka drosophila <flies,subgenus>)
J: sericata sericata
K: drosophila melanogaster (sophophora melanogaster) (aka drosophila melanogaster)
L: dipoena melanogaster (atea melanogaster) (aka dipoena melanogaster)
M: plantago sericea
N: drosophila dissimilis (drosophila (dudaica) dissimilis) (aka drosophila dissimilis)
O: None of the above. | [E; K; K] |
<Instruct>: Given the context 'The increasing global crisis in NCDs is a barrier to development goals including poverty reduction, health equity, economic stability, and human security.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: human (aka homo sapiens)
B: carcharhinus humani
C: macrobiotus sapiens
D: neandertal man (aka homo sapiens neanderthalensis)
E: gymnopleurus humanus
F: None of the above. | [A] |
<Instruct>: Given the context 'The Lancet NCD Action Group and the NCD Alliance propose five overarching priority actions for the response to the crisis--leadership, prevention, treatment, international cooperation, and monitoring and accountability--and the delivery of five priority interventions--tobacco control, salt reduction, improved diets and physical activity, reduction in hazardous alcohol intake, and essential drugs and technologies.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco]
<Options>: A: persian tobacco (aka nicotiana alata)
B: nicotiana occidentalis
C: wild tobacco (aka nicotiana rustica)
D: american tobacco (aka nicotiana tabacum)
E: nicotiana benthamiana
F: None of the above. | [D] |
<Instruct>: Given the context 'The Lancet NCD Action Group and the NCD Alliance propose five overarching priority actions for the response to the crisis--leadership, prevention, treatment, international cooperation, and monitoring and accountability--and the delivery of five priority interventions--tobacco control, salt reduction, improved diets and physical activity, reduction in hazardous alcohol intake, and essential drugs and technologies.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco]
<Options>: A: persian tobacco (aka nicotiana alata)
B: wild tobacco (aka nicotiana rustica)
C: nicotiana benthamiana
D: nicotiana occidentalis
E: None of the above. | [E] |
<Instruct>: Given the context 'The most urgent and immediate priority is tobacco control.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco]
<Options>: A: wild tobacco (aka nicotiana rustica)
B: nicotiana tabacum (american tobacco) (aka nicotiana tabacum)
C: nicotiana benthamiana
D: tree tobacco (aka nicotiana glauca)
E: nicotiana occidentalis
F: None of the above. | [B] |
<Instruct>: Given the context 'We propose as a goal for 2040, a world essentially free from tobacco where less than 5% of people use tobacco.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco]
<Options>: A: nicotiana occidentalis
B: flowering tobacco (aka nicotiana alata)
C: common tobacco (aka nicotiana tabacum)
D: acuminate tobacco (aka nicotiana acuminata)
E: nicotiana glauca (glaucous tobacco) (aka nicotiana glauca)
F: None of the above. | [C] |
<Instruct>: Given the context 'The Perigord black truffle responds to cold temperature with an extensive reprogramming of its transcriptional activity.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [perigord black truffle]
<Options>: A: thyone nigra
B: french truffle (aka tuber melanosporum)
C: pogonus texanus
D: polytrichum perigoniale
E: perityle trichodonta
F: None of the above. | [B] |
<Instruct>: Given the context 'The Tuber melanosporum genome has been analysed with the aim of identifying and characterizing the genes involved in the environmental stress response.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tuber melanosporum]
<Options>: A: perigord truffle (aka tuber melanosporum)
B: triepeolus melanarius
C: tuber calosporum
D: tuber melanoexcavatum
E: monotagma tuberosum
F: None of the above. | [A] |
<Instruct>: Given the context 'Auritidibacter ignavus gen. nov., sp. nov., of the family Micrococcaceae isolated from an ear swab of a man with otitis externa, transfer of the members of the family Yaniellaceae Li et al. 2008 to the family Micrococcaceae and emended description of the suborder Micrococcineae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [auritidibacter ignavus gen. nov., sp. nov.]
<Options>: A: auritidibacter ignavus
B: actirhodobacter atriluteus
C: undibacterium cyanobacteriorum
D: panacibacter sp.
E: agriterribacter sp.
F: None of the above. | [A] |
<Instruct>: Given the context 'A Gram-reaction-positive, aerobic, catalase-positive, non-spore-forming, rod-shaped bacterium designated IMMIB L-1656(T) was isolated from an ear swab of a man and characterized using a polyphasic approach.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [immib l-1656(t)]
<Options>: A: immergentia
B: iambrix
C: indlulamithivirus indlulamithi (mycobacterium virus indlulamithi) (aka indlulamithivirus indlulamithi)
D: imbira
E: mycobacterium phage ibrahim
F: None of the above. | [F] |
<Instruct>: Given the context '16S rRNA gene sequence analysis indicated that strain IMMIB L-1656(T) is related to members of the family Micrococcaceae (<95.1 % sequence similarity).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [immib l-1656(t)]
<Options>: A: imelda
B: tortricomorpha albifasciella (aka imma albifasciella)
C: mycobacterium phage indlulamithi
D: lirceus malabadi
E: antillimunida flinti (munida flinti) (aka antillimunida flinti)
F: None of the above. | [F] |
<Instruct>: Given the context 'Anaylsis using different phylogenetic algorithms consistently grouped strain IMMIB L-1656(T) with members of the genus Yaniella.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [immib l-1656(t)]
<Options>: A: arminda
B: indabracon
C: mycobacterium phage ibrahim
D: immyrla
E: imathia
F: None of the above. | [F] |
<Instruct>: Given the context 'Based on its distinctive genotypic and phenotypic characteristics, strain IMMIB L-1656(T) represents a novel species in a novel genus, for which the name Auritidibacter ignavus gen. nov., sp. nov. is proposed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [immib l-1656(t); auritidibacter ignavus gen. nov., sp. nov.]
<Options>: A: immergentia
B: aurantiacibacter flavus
C: auritidibacter ignavus
D: auritidibacter sp.
E: melinda
F: mycobacterium virus indlulamithi (aka indlulamithivirus indlulamithi)
G: imelda
H: undibacterium cyanobacteriorum
I: indabracon
J: panacibacter sp.
K: None of the above. | [C; C] |
<Instruct>: Given the context 'Based on its distinctive genotypic and phenotypic characteristics, strain IMMIB L-1656(T) represents a novel species in a novel genus, for which the name Auritidibacter ignavus gen. nov., sp. nov. is proposed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [immib l-1656(t); auritidibacter ignavus gen. nov., sp. nov.]
<Options>: A: melinda
B: indabracon
C: imelda
D: panacibacter sp.
E: immergentia
F: mycobacterium virus indlulamithi (aka indlulamithivirus indlulamithi)
G: auritidibacter sp.
H: aurantiacibacter flavus
I: undibacterium cyanobacteriorum
J: None of the above. | [J; J] |
<Instruct>: Given the context 'Based on its distinctive genotypic and phenotypic characteristics, strain IMMIB L-1656(T) represents a novel species in a novel genus, for which the name Auritidibacter ignavus gen. nov., sp. nov. is proposed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [immib l-1656(t); auritidibacter ignavus gen. nov., sp. nov.]
<Options>: A: iambrix
B: auritidibacter ignavus
C: immadellana
D: auritidibacter
E: lirceus malabadi
F: panacibacter sp.
G: aurantibacter sp.
H: immundisolibacter sp.
I: imelda
J: immergentia
K: None of the above. | [B; B] |
<Instruct>: Given the context 'The type strain of Auritidibacter ignavus is IMMIB L-1656(T) (=DSM 45359(T) =CCUG 57943(T)).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [auritidibacter ignavus; immib l-1656(t); dsm 45359(t); ccug 57943(t)]
<Options>: A: auritidibacter ignavus
B: imathia
C: gram-negative bacterium tr-59
D: immadellana
E: antillimunida flinti (munida flinti) (aka antillimunida flinti)
F: lirceus malabadi
G: gammaproteobacteria bacterium tmed159
H: campylobacter coli lmg 9860
I: antribacter gilvus
J: chlamydia trachomatis g/11222
K: aurantiacibacter flavus
L: campylobacter coli lmg 9854
M: iambrix
N: bacterium romem59sa330
O: chlamydia trachomatis g/9768
P: doronomyrmex
Q: enterobacteriaceae bacterium r-32559
R: indiicoccus explosivorum
S: enterobacteriaceae bacterium ccug 67584
T: caviibacter abscessus
U: None of the above. | [A; A; A; A] |
<Instruct>: Given the context 'The type strain of Auritidibacter ignavus is IMMIB L-1656(T) (=DSM 45359(T) =CCUG 57943(T)).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [auritidibacter ignavus; immib l-1656(t); dsm 45359(t); ccug 57943(t)]
<Options>: A: anthrax irroratus
B: imathia
C: indiicoccus explosivorum
D: bacterium romem59sa330
E: clostridium sp. ccug 7971
F: melinda
G: arminda
H: enterobacteriaceae bacterium r-32559
I: auritidibacter ignavus
J: mycobacterium phage ibrahim
K: bacterium romem59sa336
L: carpoglossum
M: imelda
N: distromium didymothrix
O: madoryx
P: chlamydia trachomatis g/11074
Q: caviibacter abscessus
R: chlamydia trachomatis g/9768
S: chryseosolibacter indicus
T: cistugo
U: None of the above. | [I; I; I; I] |
<Instruct>: Given the context 'The type strain of Auritidibacter ignavus is IMMIB L-1656(T) (=DSM 45359(T) =CCUG 57943(T)).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [auritidibacter ignavus; immib l-1656(t); dsm 45359(t); ccug 57943(t)]
<Options>: A: madoryx
B: imathia
C: caviibacter abscessus
D: bacterium romem59sa336
E: distromium didymothrix
F: indiicoccus explosivorum
G: arminda
H: bacterium romem59sa330
I: melinda
J: carpoglossum
K: anthrax irroratus
L: chlamydia trachomatis g/9768
M: imelda
N: chlamydia trachomatis g/11074
O: cistugo
P: enterobacteriaceae bacterium r-32559
Q: mycobacterium phage ibrahim
R: chryseosolibacter indicus
S: clostridium sp. ccug 7971
T: None of the above. | [T; T; T; T] |
<Instruct>: Given the context 'The type strain of Auritidibacter ignavus is IMMIB L-1656(T) (=DSM 45359(T) =CCUG 57943(T)).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [auritidibacter ignavus; immib l-1656(t); dsm 45359(t); ccug 57943(t)]
<Options>: A: antribacter gilvus
B: irolita
C: didysimulans
D: clostridium sp. ccug 7971
E: enterobacteriaceae bacterium r-32559
F: auritidibacter ignavus
G: distromium didymothrix
H: arminda
I: coccinella fulgida
J: mycobacterium phage ibrahim
K: iambrix
L: clostridium botulinum d str. ccug 7971
M: gram-negative bacterium tr-59
N: campylobacter coli lmg 9853
O: bacterium romem59sa330
P: amaryllis ignea (aka phycella ignea)
Q: fundicoccus ignavus
R: imathia
S: anaeramoeba ignava
T: crocanthemum carolinianum
U: None of the above. | [F; F; F; F] |
<Instruct>: Given the context 'The type strain of Auritidibacter ignavus is IMMIB L-1656(T) (=DSM 45359(T) =CCUG 57943(T)).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [auritidibacter ignavus; immib l-1656(t); dsm 45359(t); ccug 57943(t)]
<Options>: A: enterobacteriaceae bacterium r-32559
B: agaribacter flavus
C: clostridium difficile 5754 (aka clostridioides difficile 5754)
D: deltote
E: mycobacterium phage indlulamithi
F: fundicoccus ignavus
G: trugon
H: iambrix
I: campylobacter coli lmg 9853
J: aspergillus igneus
K: proteobacterium sttd349
L: clostridium sp. ccug 7971
M: lirceus malabadi
N: auritidibacter ignavus
O: clostridium tyrobutyricum divetgp
P: imma albifasciella (tortricomorpha albifasciella) (aka imma albifasciella)
Q: imelda
R: undibacterium cyanobacteriorum
S: distromium didymothrix
T: campylobacter coli lmg 9860
U: None of the above. | [N; N; N; N] |
<Instruct>: Given the context 'The rapid production of high-titer porcine endogenous retrovirus(PERV)-B env pseudotype and construction of an EGFP-expressing replication competent PERV-A vector.
Porcine endogenous retroviruses (PERVs) present a unique concern associated with xenotransplantation because they have been shown to infect certain human cells in vitro and it is also difficult to generate herds of pigs free of PERVs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [porcine endogenous retrovirus; porcine endogenous retroviruses; pervs; human]
<Options>: A: porcine endogenous retrovirus m20
B: sphaeria humana (aka sordaria humana)
C: endogenous prairie dog retrovirus
D: carcharhinus humani
E: erve virus
F: porcine endogenous retrovirus perv-msl (aka porcine endogenous retrovirus msl)
G: porcine endogenous retrovirus (perv (aka porcine endogenous retrovirus))
H: porcine endogenous retrovirus m4
I: perrunavirus
J: pesv (aka pea streak virus) (aka pea streak virus)
K: ppv (aka porcine parvovirus) (aka porcine parvovirus)
L: neandertal (aka homo sapiens neanderthalensis)
M: porcine endogenous retrovirus m16
N: pernambuco virus
O: homo sapiens (human) (aka homo sapiens)
P: pig endogenous retrovirus (aka porcine endogenous retrovirus c)
Q: endogenous sheep retrovirus
R: porcine stool-associated rna virus (aka posavirus)
S: great apes (aka hominidae)
T: None of the above. | [T; T; T; O] |
<Instruct>: Given the context 'The rapid production of high-titer porcine endogenous retrovirus(PERV)-B env pseudotype and construction of an EGFP-expressing replication competent PERV-A vector.
Porcine endogenous retroviruses (PERVs) present a unique concern associated with xenotransplantation because they have been shown to infect certain human cells in vitro and it is also difficult to generate herds of pigs free of PERVs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [porcine endogenous retrovirus; porcine endogenous retroviruses; pervs; human]
<Options>: A: endogenous prairie dog retrovirus
B: porcine endogenous retrovirus b (porcine endogenous retrovirus subclass b) (aka porcine endogenous retrovirus b)
C: porcine endogenous retrovirus (perv (aka porcine endogenous retrovirus))
D: porcine endogenous retrovirus subclass b (aka porcine endogenous retrovirus b)
E: human louse (aka pediculus humanus)
F: porcine endogenous retrovirus a (porcine endogenous retrovirus subclass a) (aka porcine endogenous retrovirus a)
G: erve virus
H: homo sapiens (human) (aka homo sapiens)
I: pernambuco virus
J: pergamino virus
K: porcine endogenous retrovirus c/a
L: pea streak virus (pesv (aka pea streak virus))
M: perv (aka porcine endogenous retrovirus) (aka porcine endogenous retrovirus)
N: macrobiotus sapiens
O: porcine endogenous retrovirus msl (porcine endogenous retrovirus perv-msl) (aka porcine endogenous retrovirus msl)
P: porcine stool-associated rna virus (aka posavirus)
Q: porcine endogenous retrovirus c (porcine endogenous type c retrovirus) (aka porcine endogenous retrovirus c)
R: neandertal (aka homo sapiens neanderthalensis)
S: sphaeria humana (aka sordaria humana)
T: porcine endogenous retrovirus m20
U: None of the above. | [U; U; U; H] |
<Instruct>: Given the context 'The rapid production of high-titer porcine endogenous retrovirus(PERV)-B env pseudotype and construction of an EGFP-expressing replication competent PERV-A vector.
Porcine endogenous retroviruses (PERVs) present a unique concern associated with xenotransplantation because they have been shown to infect certain human cells in vitro and it is also difficult to generate herds of pigs free of PERVs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [porcine endogenous retrovirus; porcine endogenous retroviruses; pervs; human]
<Options>: A: perdoes virus
B: porcine endogenous retrovirus m4
C: porcine endogenous retrovirus e (porcine endogenous retrovirus class e) (aka porcine endogenous retrovirus e)
D: porcine endogenous retrovirus (perv (aka porcine endogenous retrovirus))
E: gymnopleurus humanus
F: pera
G: humans (aka homo)
H: porcine endogenous retrovirus subclass b (aka porcine endogenous retrovirus b)
I: porcine endogenous retrovirus c/a
J: sphaeria humana (aka sordaria humana)
K: endogenous sheep retrovirus
L: pervetustus
M: pernambuco virus
N: porcine endogenous retrovirus m16
O: homo sapiens (human) (aka homo sapiens)
P: macrobiotus sapiens
Q: endogenous prairie dog retrovirus
R: None of the above. | [R; R; R; O] |
<Instruct>: Given the context 'The rapid production of high-titer porcine endogenous retrovirus(PERV)-B env pseudotype and construction of an EGFP-expressing replication competent PERV-A vector.
Porcine endogenous retroviruses (PERVs) present a unique concern associated with xenotransplantation because they have been shown to infect certain human cells in vitro and it is also difficult to generate herds of pigs free of PERVs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [porcine endogenous retrovirus; porcine endogenous retroviruses; pervs; human]
<Options>: A: porcine endogenous retrovirus m16
B: endogenous prairie dog retrovirus
C: porcine endogenous retrovirus (perv (aka porcine endogenous retrovirus))
D: porcine endogenous retrovirus c/a
E: porcine endogenous retrovirus e (porcine endogenous retrovirus class e) (aka porcine endogenous retrovirus e)
F: pernambuco virus
G: pera
H: sphaeria humana (aka sordaria humana)
I: perdoes virus
J: porcine endogenous retrovirus m4
K: macrobiotus sapiens
L: humans (aka homo)
M: porcine endogenous retrovirus subclass b (aka porcine endogenous retrovirus b)
N: pervetustus
O: gymnopleurus humanus
P: endogenous sheep retrovirus
Q: None of the above. | [Q; Q; Q; Q] |
<Instruct>: Given the context 'The rapid production of high-titer porcine endogenous retrovirus(PERV)-B env pseudotype and construction of an EGFP-expressing replication competent PERV-A vector.
Porcine endogenous retroviruses (PERVs) present a unique concern associated with xenotransplantation because they have been shown to infect certain human cells in vitro and it is also difficult to generate herds of pigs free of PERVs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [porcine endogenous retrovirus; porcine endogenous retroviruses; pervs; human]
<Options>: A: prrsv (aka porcine reproductive and respiratory syndrome virus)
B: peropuvirus
C: porcine endogenous retrovirus e (porcine endogenous retrovirus class e) (aka porcine endogenous retrovirus e)
D: pernambuco virus
E: great apes (aka hominidae)
F: porcine endogenous retrovirus (perv (aka porcine endogenous retrovirus))
G: endogenous sheep retrovirus
H: porcine endogenous retrovirus b (porcine endogenous retrovirus subclass b) (aka porcine endogenous retrovirus b)
I: porcine endogenous type c retrovirus (aka porcine endogenous retrovirus c)
J: sphaeria humana (aka sordaria humana)
K: human (aka homo sapiens)
L: pig endogenous retrovirus (aka porcine endogenous retrovirus c)
M: porcine endogenous retrovirus m16
N: pergamino virus
O: gymnopleurus humanus
P: porcine endogenous retrovirus msl (porcine endogenous retrovirus perv-msl) (aka porcine endogenous retrovirus msl)
Q: pea streak virus (pesv (aka pea streak virus))
R: homo (humans) (aka homo)
S: None of the above. | [S; S; S; K] |
<Instruct>: Given the context 'The rapid production of high-titer porcine endogenous retrovirus(PERV)-B env pseudotype and construction of an EGFP-expressing replication competent PERV-A vector.
Porcine endogenous retroviruses (PERVs) present a unique concern associated with xenotransplantation because they have been shown to infect certain human cells in vitro and it is also difficult to generate herds of pigs free of PERVs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs; pervs]
<Options>: A: ppv (aka porcine parvovirus) (aka porcine parvovirus)
B: sus philippensis (philippine warty pig) (aka sus philippensis)
C: pigs (aka suidae) (aka suidae)
D: porcine pestivirus
E: domestic guinea pig (aka cavia porcellus)
F: prrsv (aka porcine reproductive and respiratory syndrome virus)
G: sus porcus (aka potamochoerus porcus)
H: pea streak virus (pesv (aka pea streak virus))
I: swine (aka sus scrofa)
J: peropuvirus
K: None of the above. | [I; K] |
<Instruct>: Given the context 'The rapid production of high-titer porcine endogenous retrovirus(PERV)-B env pseudotype and construction of an EGFP-expressing replication competent PERV-A vector.
Porcine endogenous retroviruses (PERVs) present a unique concern associated with xenotransplantation because they have been shown to infect certain human cells in vitro and it is also difficult to generate herds of pigs free of PERVs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs; pervs]
<Options>: A: sus scrofa papuensis (sus papuensis) (aka sus scrofa papuensis)
B: peropuvirus
C: sus philippensis (philippine warty pig) (aka sus philippensis)
D: taiwan pig (aka sus scrofa taivanus)
E: perv (aka porcine endogenous retrovirus) (aka porcine endogenous retrovirus)
F: pergamino virus
G: boars (aka suidae)
H: swine (aka sus scrofa)
I: porcine associated porprismacovirus
J: perdix perdix retrovirus
K: None of the above. | [H; K] |
<Instruct>: Given the context 'To improve the MLV-based retroviral vector system, a 2.1-kb PERV-B env product was amplified from PK-15 genomic DNA and cloned into the pCL-Eco retroviral vector.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [retroviral; perv]
<Options>: A: perdix perdix retrovirus
B: porcine enterovirus
C: peropuvirus
D: replication competent viruses
E: replication defective viruses
F: porcine endogenous retrovirus (perv (aka porcine endogenous retrovirus))
G: unidentified retrovirus (retrovirus) (aka unidentified retrovirus)
H: rna viruses (aka riboviria)
I: vir
J: perrin park virus
K: None of the above. | [G; K] |
<Instruct>: Given the context 'To improve the MLV-based retroviral vector system, a 2.1-kb PERV-B env product was amplified from PK-15 genomic DNA and cloned into the pCL-Eco retroviral vector.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [retroviral; perv]
<Options>: A: peropuvirus
B: replication competent viruses
C: replication defective viruses
D: perrin park virus
E: rna viruses (aka riboviria)
F: porcine endogenous retrovirus (perv (aka porcine endogenous retrovirus))
G: vir
H: perdix perdix retrovirus
I: porcine enterovirus
J: None of the above. | [J; J] |
<Instruct>: Given the context 'To improve the MLV-based retroviral vector system, a 2.1-kb PERV-B env product was amplified from PK-15 genomic DNA and cloned into the pCL-Eco retroviral vector.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [retroviral; perv]
<Options>: A: perdoes virus
B: replication competent viruses
C: replication defective viruses
D: perrunavirus
E: pergamino virus
F: betaretrovirus
G: porcine partetravirus
H: pernambuco virus
I: retroviridae
J: retrovirus (aka unidentified retrovirus)
K: None of the above. | [J; K] |
<Instruct>: Given the context 'The titer of lacZ (PERV-B) from the 293 cells was about 1.0x10(4) CFU/ml.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [perv-b]
<Options>: A: pergamino virus
B: bfpyv (aka gammapolyomavirus avis)
C: papaya virus b
D: porcine endogenous retrovirus subclass b (aka porcine endogenous retrovirus b)
E: pernambuco virus
F: None of the above. | [F] |
<Instruct>: Given the context 'In contrast, the titer of lacZ (PERV-B) from a conventional murine retroviral vector (split genome) was found to be 1.2x10(2) CFU/ml when the PERV-B env expression vector was transfected into TELCeB6 cells, which harbor MFGnlslacZ and the gag-pol-expressing vector.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [retroviral; perv-b]
<Options>: A: avian retroviruses
B: rna viruses (aka riboviria)
C: replication competent viruses
D: unidentified retrovirus (retrovirus) (aka unidentified retrovirus)
E: smrv (aka squirrel monkey retrovirus) (aka squirrel monkey retrovirus)
F: porcine picobirnavirus
G: papaya virus b
H: bovine porprismacovirus
I: pergamino virus
J: perrunavirus
K: None of the above. | [D; K] |
<Instruct>: Given the context 'In contrast, the titer of lacZ (PERV-B) from a conventional murine retroviral vector (split genome) was found to be 1.2x10(2) CFU/ml when the PERV-B env expression vector was transfected into TELCeB6 cells, which harbor MFGnlslacZ and the gag-pol-expressing vector.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [retroviral; perv-b]
<Options>: A: rna viruses (aka riboviria)
B: perrunavirus
C: perdix perdix retrovirus
D: foamy retrovirus (aka human foamy virus)
E: retroviridae
F: bfpyv (aka gammapolyomavirus avis)
G: unidentified retrovirus (retrovirus) (aka unidentified retrovirus)
H: papaya virus b
I: porcine parvovirus ppv (aka porcine parvovirus)
J: avian retrovirus
K: None of the above. | [G; K] |
<Instruct>: Given the context 'In addition, an infectious PERV-A clone containing enhanced GFP (EGFP) by using a PCR-based method was developed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [perv-a]
<Options>: A: porcine endogenous retrovirus a (porcine endogenous retrovirus subclass a) (aka porcine endogenous retrovirus a)
B: poecivirus a
C: porcine endogenous retrovirus (perv (aka porcine endogenous retrovirus))
D: pergamino virus
E: porcine endogenous retrovirus c/a
F: None of the above. | [F] |
<Instruct>: Given the context 'Identification and characterization of a putative basic helix-loop-helix transcription factor involved in the early stage of conidiophore development in Aspergillus oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus oryzae]
<Options>: A: chitinophaga oryzae
B: sclerotium oryzae (aka nakataea oryzae)
C: aspergillus oryzae var. oryzae
D: aspergillus flavus var. oryzae (aka aspergillus oryzae)
E: 'amorphomonas oryzae' (aka amorphomonas oryzae)
F: None of the above. | [D] |
<Instruct>: Given the context 'In this study, we isolated and characterized a novel predicted bHLH protein-encoding gene, AO090023000902, designated ecdR (early conidiophore development regulator), in Aspergillus oryzae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus oryzae]
<Options>: A: sclerotium oryzae (aka nakataea oryzae)
B: pestalotiopsis oryzae
C: aspergillus flavus var. oryzae (aka aspergillus oryzae)
D: pleospora oryzae (aka phaeosphaeria oryzae)
E: chitinophaga oryzae
F: None of the above. | [C] |
<Instruct>: Given the context 'In this study, we isolated and characterized a novel predicted bHLH protein-encoding gene, AO090023000902, designated ecdR (early conidiophore development regulator), in Aspergillus oryzae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus oryzae]
<Options>: A: pestalotiopsis oryzae
B: sclerotium oryzae (aka nakataea oryzae)
C: pleospora oryzae (aka phaeosphaeria oryzae)
D: chitinophaga oryzae
E: None of the above. | [E] |
<Instruct>: Given the context 'Yeast two-hybrid assays and sclR, ecdR-double deletion experiment indicated that EcdR plays a major role in conidiation, and SclR represses this function by competitively interacting with EcdR in A. oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; a. oryzae]
<Options>: A: magnaporthe oryzae (aka pyricularia oryzae)
B: saccharomyces rouxii (aka zygosaccharomyces rouxii)
C: kosakonia oryzae (enterobacter oryzae) (aka kosakonia oryzae)
D: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
E: eurotium oryzae (aka aspergillus oryzae)
F: pleospora oryzae (aka phaeosphaeria oryzae)
G: saccharomyces albicans (aka candida albicans)
H: apodus oryzae
I: saccharomyces globosus (aka saccharomyces uvarum)
J: mycoderma cerevisiae (aka saccharomyces cerevisiae)
K: None of the above. | [J; E] |
<Instruct>: Given the context 'Yeast two-hybrid assays and sclR, ecdR-double deletion experiment indicated that EcdR plays a major role in conidiation, and SclR represses this function by competitively interacting with EcdR in A. oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; a. oryzae]
<Options>: A: aspergillus oryzae var. oryzae
B: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
C: chitinophaga oryzae
D: saccharomyces ovalis (aka malassezia furfur)
E: saccharomyces marxianus (aka kluyveromyces marxianus)
F: saccharomyces fermentati (aka torulaspora delbrueckii)
G: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
H: hannaella oryzae (bullera oryzae) (aka hannaella oryzae)
I: saccharomyces albicans (aka candida albicans)
J: kosakonia oryzae (enterobacter oryzae) (aka kosakonia oryzae)
K: None of the above. | [G; B] |
<Instruct>: Given the context 'The absence of sex-biased dispersal in the cooperatively breeding grey-crowned babbler.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [grey-crowned babbler]
<Options>: A: yellow-billed babbler (aka argya affinis)
B: scaly-crowned babbler (aka malacopteron cinereum)
C: chestnut-crowned babbler (aka pomatostomus ruficeps)
D: large grey babbler (aka argya malcolmi)
E: gray-crowned babbler (aka pomatostomus temporalis)
F: None of the above. | [E] |
<Instruct>: Given the context '2. Disrupted dispersal is a purported cause of decline in the Australian grey-crowned babbler (Pomatostomus temporalis).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [grey-crowned babbler; pomatostomus temporalis]
<Options>: A: gray-crowned babbler (aka pomatostomus temporalis)
B: heptapsogaster temporalis
C: white-hooded babbler (aka gampsorhynchus rufulus)
D: calyptotis temporalis
E: pareas temporalis (di linh snail-eating snake) (aka pareas temporalis)
F: jungle babbler (aka argya striata)
G: striped babbler (aka pellorneum ruficeps)
H: leptognathus temporalis (aka dipsas temporalis)
I: brown babbler (aka turdoides plebejus)
J: None of the above. | [A; A] |
<Instruct>: Given the context '2. Disrupted dispersal is a purported cause of decline in the Australian grey-crowned babbler (Pomatostomus temporalis).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [grey-crowned babbler; pomatostomus temporalis]
<Options>: A: heptapsogaster temporalis
B: rhysipolis temporalis
C: calyptotis temporalis
D: yellow-eyed babbler (aka chrysomma sinense)
E: yellow-billed babbler (aka argya affinis)
F: chestnut-crowned babbler (aka pomatostomus ruficeps)
G: brown babbler (aka turdoides plebejus)
H: leptognathus temporalis (aka dipsas temporalis)
I: gray-crowned babbler (aka pomatostomus temporalis)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'As both sexes appear to help, but only male helpers boost fledgling production, we hypothesized that males would be the more philopatric sex in this species, and that female grey-crowned babblers would disperse over greater distances.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [grey-crowned babblers]
<Options>: A: large grey babbler (aka argya malcolmi)
B: striped babbler (aka pellorneum ruficeps)
C: brown babbler (aka turdoides plebejus)
D: spiny babbler (aka turdoides nipalensis)
E: gray-crowned babbler (aka pomatostomus temporalis)
F: None of the above. | [E] |
<Instruct>: Given the context 'As both sexes appear to help, but only male helpers boost fledgling production, we hypothesized that males would be the more philopatric sex in this species, and that female grey-crowned babblers would disperse over greater distances.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [grey-crowned babblers]
<Options>: A: large grey babbler (aka argya malcolmi)
B: spiny babbler (aka turdoides nipalensis)
C: brown babbler (aka turdoides plebejus)
D: striped babbler (aka pellorneum ruficeps)
E: None of the above. | [E] |
<Instruct>: Given the context 'We report on an in-vitro dual culture system of the plasmodiophorids Plasmodiophora brassicae and Spongospora subterranea with their respective plant hosts, Brassica rapa and Solanum tuberosum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [plasmodiophora brassicae; spongospora subterranea; brassica rapa; solanum tuberosum]
<Options>: A: sollasipelta subterranea
B: 'brassica juncea' phytoplasma
C: potatoes (aka solanum tuberosum)
D: brassica rapa (field mustard) (aka brassica rapa)
E: ethiopian mustard (aka brassica carinata)
F: radopholus brassicae (aka pratylenchus brassicae)
G: solanum vicinum
H: phytophthora gallica
I: spongospora subterranea
J: plasmodiophora brassicae
K: callianassa subterranea (cancer subterraneus) (aka callianassa subterranea)
L: pseudomonas brassicacearum
M: parthenopea subterranea
N: polycladomyces subterraneus
O: solanum succosum
P: black mustard (aka brassica nigra)
Q: rape (aka brassica napus) (aka brassica napus)
R: brassica villosa
S: solanum canense
T: solanum alpinum
U: None of the above. | [J; I; D; C] |
<Instruct>: Given the context 'We report on an in-vitro dual culture system of the plasmodiophorids Plasmodiophora brassicae and Spongospora subterranea with their respective plant hosts, Brassica rapa and Solanum tuberosum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [plasmodiophora brassicae; spongospora subterranea; brassica rapa; solanum tuberosum]
<Options>: A: solanum succosum
B: solanum tettense
C: solanum arboreum
D: macrosiphoniella subterranea
E: radopholus brassicae (aka pratylenchus brassicae)
F: plasmodiophora brassicae
G: cabbage white (aka pieris rapae)
H: parthenopea subterranea
I: potato (aka solanum tuberosum)
J: solanum florulentum
K: rhabditis brassicae
L: stygocapitella subterranea
M: spongospora subterranea
N: phytophthora gallica
O: field mustard (aka brassica rapa)
P: rape (aka brassica napus) (aka brassica napus)
Q: roesleria subterranea (pilacre subterranea) (aka roesleria subterranea)
R: brassica hirta (aka sinapis alba)
S: papilio brassicae (aka pieris brassicae)
T: brassica nigra (black mustard) (aka brassica nigra)
U: None of the above. | [F; M; O; I] |
<Instruct>: Given the context 'We report on an in-vitro dual culture system of the plasmodiophorids Plasmodiophora brassicae and Spongospora subterranea with their respective plant hosts, Brassica rapa and Solanum tuberosum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [plasmodiophora brassicae; spongospora subterranea; brassica rapa; solanum tuberosum]
<Options>: A: potatoes (aka solanum tuberosum)
B: black mustard (aka brassica nigra)
C: melanospora subterranea
D: pieris rapae (european cabbage white) (aka pieris rapae)
E: ethiopian mustard (aka brassica carinata)
F: rhabditis brassicae
G: spongospora subterranea
H: plasmopara australis (peronospora australis) (aka plasmopara australis)
I: solanum trifolium
J: field mustard (aka brassica rapa)
K: parodia subterranea
L: solanum barbisetum
M: papilio brassicae (aka pieris brassicae)
N: brassica villosa
O: pyrenopeziza brassicae
P: solanum tettense
Q: plasmodiophora brassicae
R: actinotalea subterranea
S: solenopsis subterranea
T: solanum florulentum
U: None of the above. | [Q; G; J; A] |
<Instruct>: Given the context 'We report on an in-vitro dual culture system of the plasmodiophorids Plasmodiophora brassicae and Spongospora subterranea with their respective plant hosts, Brassica rapa and Solanum tuberosum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [plasmodiophora brassicae; spongospora subterranea; brassica rapa; solanum tuberosum]
<Options>: A: solanum hirtum
B: phytophthora gallica
C: spongospora subterranea
D: brassica atlantica (aka brassica insularis)
E: parthenopea subterranea
F: phytophthora platani
G: papilio brassicae (aka pieris brassicae)
H: solanum horridum
I: potato (aka solanum tuberosum)
J: plasmodiophora brassicae
K: conophytum subterraneum
L: brassica hirta (aka sinapis alba)
M: brassica napus (rape (aka brassica napus))
N: ethiopian mustard (aka brassica carinata)
O: solanum canense
P: solanum alpinum
Q: adesmia subterranea
R: field mustard (aka brassica rapa)
S: patulibacter brassicae
T: sollasipelta subterranea
U: None of the above. | [J; C; R; I] |
<Instruct>: Given the context 'We show that callus cultures harbouring S. subterranea provide an excellent starting material for gene discovery from this organism by constructing a pilot-scale DNA library.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. subterranea]
<Options>: A: isoachlya subterranea (aka saprolegnia subterranea)
B: spongospora subterranea
C: actinotalea subterranea
D: feltia subterranea (aka agrotis subterranea)
E: disciseda subterranea (bovista subterranea) (aka disciseda subterranea)
F: None of the above. | [B] |
<Instruct>: Given the context 'Bioinformatic analysis of the sequences established that almost all of the DNA clones from this library were from S. subterranea rather than the plant host.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. subterranea]
<Options>: A: nothoserrulina subterranea
B: spongospora subterranea
C: solenopsis subterranea
D: saprolegnia subterranea (isoachlya subterranea) (aka saprolegnia subterranea)
E: callianassa subterranea (cancer subterraneus) (aka callianassa subterranea)
F: None of the above. | [B] |
<Instruct>: Given the context 'In this study, we sequenced plastid-encoded genes from L. chlorophorum, one pedinophyte species, one ulvophyte species, and six prasinophyte species.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. chlorophorum]
<Options>: A: helix lucorum
B: phytophthora foliorum
C: lepidodinium chlorophorum (gymnodinium chlorophorum) (aka lepidodinium chlorophorum)
D: helminthosporium chlorophorae
E: gavilea littoralis (chloraea littoralis) (aka gavilea littoralis)
F: None of the above. | [C] |
<Instruct>: Given the context 'All the analyses of the 11-protein data set robustly grouped L. chlorophorum with members of the "core chlorophytes." Thus, we here propose that Lepidodinium plastids are of core chlorophyte origin.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. chlorophorum]
<Options>: A: chloraea littoralis (aka gavilea littoralis)
B: gymnodinium chlorophorum (aka lepidodinium chlorophorum)
C: helix lucorum
D: chlorophytum bulbinifolium
E: chlorophytum viridescens
F: None of the above. | [B] |
<Instruct>: Given the context 'All the analyses of the 11-protein data set robustly grouped L. chlorophorum with members of the "core chlorophytes." Thus, we here propose that Lepidodinium plastids are of core chlorophyte origin.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. chlorophorum]
<Options>: A: helix lucorum
B: chloraea littoralis (aka gavilea littoralis)
C: chlorophytum viridescens
D: chlorophytum bulbinifolium
E: None of the above. | [E] |
<Instruct>: Given the context 'Cross-talk between light and glucose regulation controls toxin production and morphogenesis in Aspergillus nidulans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans]
<Options>: A: aspergillus nidulellus (aka aspergillus nidulans)
B: aspergillus avenaceus
C: nassella nidulans
D: aspergillus agricola
E: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
F: None of the above. | [A] |
<Instruct>: Given the context 'In this study we show that in Aspergillus nidulans the effect of light on the production of the sterigmatocystin (ST) toxin depends on the glucose concentration.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans]
<Options>: A: emericella nidulans (aka aspergillus nidulans)
B: aspergillus agricola
C: aspergillus aureus
D: aspergillus aureolus (neosartorya aureola) (aka aspergillus aureolus)
E: aspergillus tritici (aka aspergillus neotritici)
F: None of the above. | [A] |
<Instruct>: Given the context 'Identification and characterization of putative osmosensors, HwSho1A and HwSho1B, from the extremely halotolerant black yeast Hortaea werneckii.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hortaea werneckii]
<Options>: A: hortaea werneckii (cladosporium werneckii) (aka hortaea werneckii)
B: wercklea horrida (hibiscus horridus) (aka wercklea horrida)
C: jobinia hatschbachii
D: helicteres eitenii
E: ipomoea hartmannii
F: None of the above. | [A] |
<Instruct>: Given the context 'In Saccharomyces cerevisiae, the Sho1 protein is one of two potential osmosensors that can activate the kinase cascade of the HOG pathway in response to increased extracellular osmolarity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [saccharomyces cerevisiae]
<Options>: A: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
B: saccharomyces albicans (aka candida albicans)
C: saccharomyces fermentati (aka torulaspora delbrueckii)
D: megasphaera cerevisiae
E: saccharomyces marxianus (aka kluyveromyces marxianus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Two novel SHO1-like genes, HwSHO1A and HwSHO1B, have been cloned from the saltern-inhabiting, extremely halotolerant black yeast Hortaea werneckii.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hortaea werneckii]
<Options>: A: ruizterania wittrockii (qualea wittrockii) (aka ruizterania wittrockii)
B: saxifraga wahlenbergii
C: wercklea horrida (hibiscus horridus) (aka wercklea horrida)
D: cyathea werffii
E: cladosporium werneckii (aka hortaea werneckii)
F: None of the above. | [E] |
<Instruct>: Given the context 'When the HwSHO1 genes were transferred into S. cerevisae cells lacking the SHO1 gene, both of the HwSho1 isoforms fully complemented the function of the native S. cerevisiae Sho1 protein.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. cerevisae; s. cerevisiae]
<Options>: A: saccharomyceta
B: saccharomyces marxianus (aka kluyveromyces marxianus)
C: saccharopolyspora terrae
D: saccharomyces ovalis (aka malassezia furfur)
E: saccharomyces paradoxus
F: baker's yeast (aka saccharomyces cerevisiae)
G: saccharomyces albicans (aka candida albicans)
H: saccharomyces lactis (aka kluyveromyces lactis)
I: saccharomyces rouxii (aka zygosaccharomyces rouxii)
J: None of the above. | [F; F] |
<Instruct>: Given the context 'When the HwSHO1 genes were transferred into S. cerevisae cells lacking the SHO1 gene, both of the HwSho1 isoforms fully complemented the function of the native S. cerevisiae Sho1 protein.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. cerevisae; s. cerevisiae]
<Options>: A: saccharomyces hansenii (aka debaryomyces hansenii)
B: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
C: saccharomyces ovalis (aka malassezia furfur)
D: saccharomyces globosus (aka saccharomyces uvarum)
E: saccharomyces albicans (aka candida albicans)
F: saccharomonospora
G: megasphaera cerevisiae
H: saccharomyces mikatae
I: None of the above. | [B; B] |
<Instruct>: Given the context 'Through microscopic and biochemical validation, we demonstrate that in S. cerevisiae, both of the HwSho1 proteins have characteristic subcellular localizations similar to the S. cerevisiae Sho1 protein, and they can both activate the HOG pathway under conditions of osmotic stress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. cerevisiae]
<Options>: A: saccharomyces pasteurianus (aka saccharomyces pastorianus)
B: mycoderma cerevisiae (aka saccharomyces cerevisiae)
C: saccharomyces drosophilarum (aka kluyveromyces lactis)
D: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
E: saccharomyces marxianus (aka kluyveromyces marxianus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Through microscopic and biochemical validation, we demonstrate that in S. cerevisiae, both of the HwSho1 proteins have characteristic subcellular localizations similar to the S. cerevisiae Sho1 protein, and they can both activate the HOG pathway under conditions of osmotic stress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. cerevisiae]
<Options>: A: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
B: saccharomyces drosophilarum (aka kluyveromyces lactis)
C: saccharomyces marxianus (aka kluyveromyces marxianus)
D: saccharomyces pasteurianus (aka saccharomyces pastorianus)
E: None of the above. | [E] |
<Instruct>: Given the context 'To a lower extent, crosstalk to the mating pathway expressing HwSho1 proteins is conserved in the PBS2 deleted S. cerevisiae strain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. cerevisiae]
<Options>: A: saccharomyces italicus (aka saccharomyces cerevisiae)
B: saccharomyces ovalis (aka malassezia furfur)
C: saccharomyces albicans (aka candida albicans)
D: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
E: saccharomyces hansenii (aka debaryomyces hansenii)
F: None of the above. | [A] |
<Instruct>: Given the context 'These data show that the HwSho1 proteins from H. werneckii are true functional homologs of the Sho1 protein of S. cerevisiae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h. werneckii; s. cerevisiae]
<Options>: A: hohenbergia fawcettii (aka wittmackia fawcettii)
B: baker's yeast (aka saccharomyces cerevisiae)
C: saccharomyces fermentati (aka torulaspora delbrueckii)
D: hydrogenophilus hirschii (hydrogenothermophilus hirschii) (aka hydrogenophilus hirschii)
E: helicoma morganii
F: saccharomyces ovalis (aka malassezia furfur)
G: heliconia wilsonii
H: saccharomyces paradoxus
I: hortaea werneckii (cladosporium werneckii) (aka hortaea werneckii)
J: saccharomyces marxianus (aka kluyveromyces marxianus)
K: None of the above. | [I; B] |
<Instruct>: Given the context 'These data show that the HwSho1 proteins from H. werneckii are true functional homologs of the Sho1 protein of S. cerevisiae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h. werneckii; s. cerevisiae]
<Options>: A: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
B: saccharomyces ovalis (aka malassezia furfur)
C: helichrysum fleckii
D: megasphaera cerevisiae
E: saccharomyces rouxii (aka zygosaccharomyces rouxii)
F: helianthus winteri
G: helix schrenckii (aka fruticicola schrenckii)
H: cladosporium werneckii (aka hortaea werneckii)
I: hortaea werneckii exf-2000
J: saccharomyces hansenii (aka debaryomyces hansenii)
K: None of the above. | [H; A] |
<Instruct>: Given the context 'A mutation in the Cc.ubc2 gene affects clamp cell morphogenesis as well as nuclear migration for dikaryosis in Coprinopsis cinerea.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [coprinopsis cinerea]
<Options>: A: plectrocnemia cinerea (polycentropus cinereus) (aka plectrocnemia cinerea)
B: alsophila cinerea (cyathea cinerea) (aka alsophila cinerea)
C: coprinus macrorhizus (aka coprinopsis cinerea)
D: coprinopsis cineraria (psathyrella cineraria) (aka coprinopsis cineraria)
E: paludicola cinerea (aka pleurodema cinereum)
F: None of the above. | [C] |
<Instruct>: Given the context 'The formation and proliferation of the dikaryon in the agaricomycete Coprinopsis cinerea is controlled by the mating type genes, A and B. The B genes, which encode pheromones and pheromone receptors, control nuclear migration for dikaryosis as well as the fusion of the clamp cell with the subterminal cell while the A genes, which encode two classes of homeodomain proteins, control conjugate nuclear division associated with clamp connection development.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [coprinopsis cinerea]
<Options>: A: pseudapis cinerea
B: copaxa cineracea
C: procellaria cinerea
D: pseudanabaena cinerea
E: coprinopsis cinerea (hormographiella aspergillata) (aka coprinopsis cinerea)
F: None of the above. | [E] |
<Instruct>: Given the context 'Molecular analysis revealed that the gene responsible for the phenotypes, designated Cc.ubc2, encodes a protein similar to Ubc2, an adaptor protein for filamentous growth, pheromone response and virulence in the smut fungus Ustilago maydis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ustilago maydis]
<Options>: A: mycosarcoma maydis (ustilago maydis) (aka mycosarcoma maydis)
B: ustilago maydis virus
C: ustilago bromina
D: ustilago levis
E: ustilago filiformis
F: None of the above. | [A] |
<Instruct>: Given the context 'Genome annotation and intraviral interactome for the Streptococcus pneumoniae virulent phage Dp-1.
Streptococcus pneumoniae causes several diseases, including pneumonia, septicemia, and meningitis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcus pneumoniae]
<Options>: A: bacillus pneumoniae (aka klebsiella pneumoniae)
B: streptococcus sanguinis
C: streptococcus parasuis
D: streptococcus parapneumoniae
E: streptococcus pneumoniae (diplococcus pneumoniae) (aka streptococcus pneumoniae)
F: None of the above. | [E] |
<Instruct>: Given the context 'Phage Dp-1 is one of the very few isolated virulent S. pneumoniae bacteriophages, but only a partial characterization is currently available.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. pneumoniae]
<Options>: A: streptococcus seminale ('streptococcus seminale') (aka streptococcus seminale)
B: streptococcus pasteuri ('streptococcus pasteuri') (aka streptococcus pasteuri)
C: streptococcus anthracis ('streptococcus anthracis') (aka streptococcus anthracis)
D: streptococcus
E: micrococcus pneumoniae (aka streptococcus pneumoniae)
F: None of the above. | [E] |
<Instruct>: Given the context 'Phage Dp-1 is one of the very few isolated virulent S. pneumoniae bacteriophages, but only a partial characterization is currently available.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. pneumoniae]
<Options>: A: streptococcus
B: streptococcus anthracis ('streptococcus anthracis') (aka streptococcus anthracis)
C: streptococcus seminale ('streptococcus seminale') (aka streptococcus seminale)
D: streptococcus pasteuri ('streptococcus pasteuri') (aka streptococcus pasteuri)
E: None of the above. | [E] |
<Instruct>: Given the context 'Possible contributions of TERMINAL FLOWER 1 to the evolution of rosette flowering in Leavenworthia (Brassicaceae).
Leavenworthia crassa is a rosette flowering species that differs from inflorescence flowering species, such as Arabidopsis thaliana, in having elongated pedicels and shortened interfloral internodes on the main axis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [leavenworthia crassa; arabidopsis thaliana]
<Options>: A: lepidium crassum
B: arabidopsis thaliana x arabidopsis lyrata
C: corynaea crassa
D: arabidopsis arenicola (arabis arenicola) (aka arabidopsis arenicola)
E: african plantain (aka plantago afra)
F: typhlocyba crassa
G: tryella crassa
H: plantago australis
I: arabis thaliana (aka arabidopsis thaliana)
J: leavenworthia crassa
K: None of the above. | [J; I] |
<Instruct>: Given the context 'Possible contributions of TERMINAL FLOWER 1 to the evolution of rosette flowering in Leavenworthia (Brassicaceae).
Leavenworthia crassa is a rosette flowering species that differs from inflorescence flowering species, such as Arabidopsis thaliana, in having elongated pedicels and shortened interfloral internodes on the main axis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [leavenworthia crassa; arabidopsis thaliana]
<Options>: A: curdiea crassa
B: arabidopsis thaliana (mouse-ear cress) (aka arabidopsis thaliana)
C: agrotis aurulenta (aka euxoa aurulenta)
D: arabidopsis (cardaminopsis) (aka arabidopsis)
E: euxoa agricola (noctua agricola) (aka euxoa agricola)
F: agrotis atrux (scotia atrux) (aka agrotis atrux)
G: tabernaemontana crassa
H: typhlocyba crassa
I: leavenworthia crassa
J: tryella crassa
K: None of the above. | [I; B] |
<Instruct>: Given the context 'We isolated LcrTFL1 and introduced a genomic construct into tfl1 mutant A. thaliana plants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. thaliana]
<Options>: A: flowering tobacco (aka nicotiana alata)
B: plantago africana
C: sorosporium tumefaciens (aka anthracocystis tumefaciens)
D: arabis lyrata (aka arabidopsis lyrata)
E: arabidopsis thaliana (mouse-ear cress) (aka arabidopsis thaliana)
F: None of the above. | [E] |
<Instruct>: Given the context 'Our data show that there are substantive differences in the regulation and/or function of TFL1 orthologs between A. thaliana and L. crassa.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. thaliana; l. crassa]
<Options>: A: microlicia crassa
B: plantago africana
C: phytomonas tumefaciens (aka agrobacterium tumefaciens)
D: arabis thaliana (aka arabidopsis thaliana)
E: arcangeliella crassa (aka lactarius crassus)
F: leavenworthia crassa
G: climacoptera crassa
H: sorosporium tumefaciens (aka anthracocystis tumefaciens)
I: stehlikiana crassa
J: aphis gossypii (cotton aphid) (aka aphis gossypii)
K: None of the above. | [D; F] |
<Instruct>: Given the context 'Our data show that there are substantive differences in the regulation and/or function of TFL1 orthologs between A. thaliana and L. crassa.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. thaliana; l. crassa]
<Options>: A: amaranthus aureus
B: arabis lyrata (aka arabidopsis lyrata)
C: euxoa agricola (noctua agricola) (aka euxoa agricola)
D: lupinus crassus
E: leavenworthia crassa
F: arabis thaliana (aka arabidopsis thaliana)
G: macleania crassa
H: phytomonas tumefaciens (aka agrobacterium tumefaciens)
I: crassula lactea
J: columnea crassa
K: None of the above. | [F; E] |
<Instruct>: Given the context 'Here, we used a combination of ionomic and gas chromatography-mass spectrometry (GC-MS)-based metabolite profilings of complete shoots (pooling leaves, petioles and stems) to compare the extremophile Lotus creticus, adapted to highly saline coastal regions, and two cultivated glycophytic grassland forage species, Lotus corniculatus and Lotus tenuis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lotus creticus; lotus corniculatus; lotus tenuis]
<Options>: A: lotus pyranthus
B: lotus glaber (aka lotus tenuis)
C: lotus hamatus
D: lotus corniculatus
E: lotus peregrinus
F: lotus castellanus
G: clypeola tenuis (aka sigapatella tenuis)
H: nemoura tenuis (aka leuctra tenuis)
I: lotus nuttallianus
J: lotus commutatus (aka lotus creticus)
K: lotus glareosus
L: lotus aegaeus
M: boleophthalmus tenuis (aka scartelaos tenuis)
N: None of the above. | [J; D; B] |
<Instruct>: Given the context 'Here, we used a combination of ionomic and gas chromatography-mass spectrometry (GC-MS)-based metabolite profilings of complete shoots (pooling leaves, petioles and stems) to compare the extremophile Lotus creticus, adapted to highly saline coastal regions, and two cultivated glycophytic grassland forage species, Lotus corniculatus and Lotus tenuis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lotus creticus; lotus corniculatus; lotus tenuis]
<Options>: A: lotus conjugatus
B: silene tenuis
C: lotus divaricatus (aka lotus macrotrichus)
D: lotus glaber (aka lotus tenuis)
E: nemoura tenuis (aka leuctra tenuis)
F: lotus corniculatus
G: lotus simonae
H: plectus tenuis
I: clypeola tenuis (aka sigapatella tenuis)
J: lotus lanuginosus
K: slender trefoil (aka lotus tenuis)
L: lotus commutatus (aka lotus creticus)
M: lotus glaucus
N: None of the above. | [L; F; K] |
<Instruct>: Given the context 'Here, we used a combination of ionomic and gas chromatography-mass spectrometry (GC-MS)-based metabolite profilings of complete shoots (pooling leaves, petioles and stems) to compare the extremophile Lotus creticus, adapted to highly saline coastal regions, and two cultivated glycophytic grassland forage species, Lotus corniculatus and Lotus tenuis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lotus creticus; lotus corniculatus; lotus tenuis]
<Options>: A: goera tenuis
B: lotus peregrinus
C: lotus glaber (aka lotus tenuis)
D: liolaemus tenuis (proctotretus tenuis) (aka liolaemus tenuis)
E: lotus corniculatus
F: lotus lanuginosus
G: lotus halophilus
H: lotus creticus (lotus commutatus) (aka lotus creticus)
I: lotus hamatus
J: lotus maroccanus
K: clypeola tenuis (aka sigapatella tenuis)
L: lotus divaricatus (aka lotus macrotrichus)
M: lotus pyranthus
N: None of the above. | [H; E; C] |
<Instruct>: Given the context 'L. creticus exhibited better survival after exposure to long-term lethal salinity and was more efficient at excluding Cl- from the shoots than the glycophytes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. creticus]
<Options>: A: linaria creticola
B: melilotus
C: lathyrus lycius
D: lactarius hora
E: lotus creticus (lotus commutatus) (aka lotus creticus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Metabolite profiling showed that responses to NaCl in L. creticus shoots were globally similar to those of the glycophytes, providing little evidence for metabolic pre-adaptation to salinity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. creticus]
<Options>: A: lotus aegaeus
B: lotus creticus (lotus commutatus) (aka lotus creticus)
C: lactarius aestivus
D: chinannus latus
E: large white (aka pieris brassicae)
F: None of the above. | [B] |
<Instruct>: Given the context 'Metabolite profiling showed that responses to NaCl in L. creticus shoots were globally similar to those of the glycophytes, providing little evidence for metabolic pre-adaptation to salinity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. creticus]
<Options>: A: lactarius aestivus
B: lotus aegaeus
C: large white (aka pieris brassicae)
D: chinannus latus
E: None of the above. | [E] |
<Instruct>: Given the context 'Proteotyping to establish the lineage of type A H1N1 and type B human influenza virus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [type a h1n1; type b human influenza virus]
<Options>: A: influenza virus (aka unidentified influenza virus)
B: human influenza a virus (aka influenza a virus)
C: gammainfluenzavirus influenzae
D: flubv (aka influenza b virus)
E: unidentified influenza virus (avian influenza virus) (aka unidentified influenza virus)
F: h1n1 subtype (h1n1 (aka h1n1 subtype))
G: h1n1 swine influenza virus
H: influenza c virus (influenza virus type c) (aka influenza c virus)
I: influenza a virus (a/china)
J: None of the above. | [B; D] |
<Instruct>: Given the context 'Proteotyping to establish the lineage of type A H1N1 and type B human influenza virus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [type a h1n1; type b human influenza virus]
<Options>: A: influenza c virus (influenza virus type c) (aka influenza c virus)
B: influenzavirus c (aka gammainfluenzavirus)
C: influenza a virus (a/china)
D: gammainfluenzavirus influenzae
E: influenza virus type b (aka influenza b virus)
F: flubv (aka influenza b virus)
G: influenza virus (aka unidentified influenza virus)
H: alphainfluenzavirus influenzae
I: human influenza a virus (aka influenza a virus)
J: None of the above. | [I; F] |
<Instruct>: Given the context 'The ability to establish the lineage of type A H1N1 and type B human influenza virus strains using a new proteotyping approach is demonstrated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [type a h1n1; type b human influenza virus]
<Options>: A: betainfluenzavirus (influenzavirus b) (aka betainfluenzavirus)
B: alphainfluenzavirus (influenzavirus a) (aka alphainfluenzavirus)
C: influenza a virus (h1n1) (unidentified influenza a virus (h1n1)) (aka influenza a virus (h1n1))
D: avian influenza virus (aka unidentified influenza virus)
E: influenza b virus (influenza virus type b) (aka influenza b virus)
F: influenza a virus (human influenza a virus) (aka influenza a virus)
G: swine influenza virus
H: influenza a virus (a/china)
I: gammainfluenzavirus influenzae
J: alphainfluenzavirus influenzae
K: None of the above. | [F; E] |
<Instruct>: Given the context 'The ability to establish the lineage of type A H1N1 and type B human influenza virus strains using a new proteotyping approach is demonstrated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [type a h1n1; type b human influenza virus]
<Options>: A: swine influenza virus
B: gammainfluenzavirus influenzae
C: influenza virus type a (aka influenza a virus)
D: human influenza a virus (aka influenza a virus)
E: influenza virus type b (aka influenza b virus)
F: influenza virus (aka unidentified influenza virus)
G: avian influenza virus (aka unidentified influenza virus)
H: flubv (aka influenza b virus)
I: influenza a virus (h1n1) (unidentified influenza a virus (h1n1)) (aka influenza a virus (h1n1))
J: influenza c virus (influenza virus type c) (aka influenza c virus)
K: None of the above. | [C; H] |
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