instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'The srtG cluster is one of the putative pilus gene clusters identified in the major swine pathogen Streptococcus suis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [swine; streptococcus suis]
<Options>: A: sus papuensis (aka sus scrofa papuensis)
B: suidae (pigs (aka suidae))
C: sus scrofa lybicus
D: streptobacillus canis
E: streptococcus australis
F: streptococcus caprinus (aka streptococcus gallolyticus)
G: streptococcus suis
H: streptococcus canis (streptococcus canis (group g)) (aka streptococcus canis)
I: pig (aka sus scrofa) (aka sus scrofa)
J: sus scrofa cristatus (sus cristatus) (aka sus scrofa cristatus)
K: None of the above. | [I; G] |
<Instruct>: Given the context 'The srtG cluster is one of the putative pilus gene clusters identified in the major swine pathogen Streptococcus suis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [swine; streptococcus suis]
<Options>: A: wild boar (aka sus scrofa)
B: streptococcus suis
C: streptococcus gallinaceus
D: streptococcus infantis
E: streptococcus parasuis
F: sus domestica (aka sus scrofa domesticus)
G: streptococcus caprinus (aka streptococcus gallolyticus)
H: suidae (pigs (aka suidae))
I: taiwan pig (aka sus scrofa taivanus)
J: sus scrofa lybicus
K: None of the above. | [A; B] |
<Instruct>: Given the context 'The srtG cluster is one of the putative pilus gene clusters identified in the major swine pathogen Streptococcus suis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [swine; streptococcus suis]
<Options>: A: sus domestica (aka sus scrofa domesticus)
B: streptococcus gallinaceus
C: taiwan pig (aka sus scrofa taivanus)
D: streptococcus suis
E: streptococcus parasuis
F: sus scrofa lybicus
G: streptococcus infantis
H: streptococcus caprinus (aka streptococcus gallolyticus)
I: suidae (pigs (aka suidae))
J: None of the above. | [J; D] |
<Instruct>: Given the context 'In this study, by constructing mutants for each of the genes in the cluster and by both immunoblotting and immunogold electron microscopic analysis with antibodies against Sgp1 and Sgp2, we found that the srtG cluster mediates the expression of pilus-like structures in S. suis strain 89/1591.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. suis strain 89/1591]
<Options>: A: streptococcus infantis
B: streptococcus suis ys111
C: streptococcus suis
D: streptococcus suis strain st1 (aka streptococcus suis st1)
E: streptococcus suis 11611
F: None of the above. | [C] |
<Instruct>: Given the context 'Here, we report the long-term impact of N loading and the recovery of ectomycorrhiza after high N loading on a Pinus sylvestris forest.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pinus sylvestris]
<Options>: A: pinus torreyana (torrey pine) (aka pinus torreyana)
B: pinus johannis
C: pinus tropicalis (tropical pine) (aka pinus tropicalis)
D: scotch pine (aka pinus sylvestris)
E: pinus cubensis
F: None of the above. | [D] |
<Instruct>: Given the context 'Here, we provide such data for two common species of swarm raiders broadly sympatric throughout the Neotropics: the iconic Eciton burchellii and the more secretive, less studied Labidus praedator.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [eciton burchellii]
<Options>: A: ionopsis burchellii
B: ipomoea burchellii
C: elaphoglossum burchellii (acrostichum burchellii) (aka elaphoglossum burchellii)
D: labidus burchellii (aka eciton burchellii)
E: guatteria burchellii
F: None of the above. | [D] |
<Instruct>: Given the context '2. We aim to quantify the relative effect of various individual, forage and climatic determinants of variation in home range size across multiple spatiotemporal scales in a large browsing herbivore, the moose (Alces alces), living at the southern limit of its distribution in Norway.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [alces alces]
<Options>: A: alces alces americana (aka alces americanus)
B: alcedinectes alcyon
C: elk (aka alces alces) (aka alces alces)
D: european elk (aka alces alces alces)
E: alcurus
F: None of the above. | [C] |
<Instruct>: Given the context 'Roles of vaccinia virus genes E3L and K3L and host genes PKR and RNase L during intratracheal infection of C57BL/6 mice.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vaccinia virus; mice]
<Options>: A: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
B: vaccinia virus (strain ankara) (aka vaccinia virus ankara)
C: mus terricolor (earth-colored mouse) (aka mus terricolor)
D: mus californicus (aka peromyscus californicus)
E: cowpox-vaccinia virus
F: mouse (aka mus musculus)
G: sheep pox virus (aka sheeppox virus)
H: vaccinia virus (strain copenhagen) (aka vaccinia virus copenhagen)
I: mus macedonicus (macedonian mouse) (aka mus macedonicus)
J: vaccinia virus vv (aka vaccinia virus)
K: None of the above. | [J; F] |
<Instruct>: Given the context 'Roles of vaccinia virus genes E3L and K3L and host genes PKR and RNase L during intratracheal infection of C57BL/6 mice.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vaccinia virus; mice]
<Options>: A: mus <genus> (mice (aka mus <genus>))
B: mus famulus (servant mouse) (aka mus famulus)
C: mus domesticus (aka mus musculus domesticus)
D: mouse (aka mus musculus)
E: vaccinia virus western reserve
F: avipoxvirus
G: vaccinia virus (strain ankara) (aka vaccinia virus ankara)
H: vaccinia virus (strain copenhagen) (aka vaccinia virus copenhagen)
I: western wild mouse (aka mus spretus)
J: vaccinia virus (vaccinia virus vv) (aka vaccinia virus)
K: None of the above. | [J; D] |
<Instruct>: Given the context 'In poxvirus infections, the interactions between the vaccinia virus (VV) genes E3L and K3L, which target RNase L and PKR, respectively, serve to prevent the induction of the dsRNA-dependent induced interferon response in cell culture.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vaccinia virus; vv]
<Options>: A: sheep pox virus (aka sheeppox virus)
B: small pox virus (aka variola virus)
C: cowpox-vaccinia virus
D: mva virus (aka modified vaccinia ankara virus)
E: vaccinia virus (vaccinia virus vv) (aka vaccinia virus)
F: fowlpox virus (avipoxvirus clade a1) (aka fowlpox virus)
G: vixey virus
H: vaccinia virus copenhagen (vaccinia virus (strain copenhagen)) (aka vaccinia virus copenhagen)
I: swine vesicular disease virus
J: None of the above. | [E; E] |
<Instruct>: Given the context 'In poxvirus infections, the interactions between the vaccinia virus (VV) genes E3L and K3L, which target RNase L and PKR, respectively, serve to prevent the induction of the dsRNA-dependent induced interferon response in cell culture.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vaccinia virus; vv]
<Options>: A: fowlpox virus (avipoxvirus clade a1) (aka fowlpox virus)
B: swine vesicular disease virus
C: cowpox-vaccinia virus
D: vaccinia virus copenhagen (vaccinia virus (strain copenhagen)) (aka vaccinia virus copenhagen)
E: small pox virus (aka variola virus)
F: mva virus (aka modified vaccinia ankara virus)
G: vixey virus
H: sheep pox virus (aka sheeppox virus)
I: None of the above. | [I; I] |
<Instruct>: Given the context 'In poxvirus infections, the interactions between the vaccinia virus (VV) genes E3L and K3L, which target RNase L and PKR, respectively, serve to prevent the induction of the dsRNA-dependent induced interferon response in cell culture.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vaccinia virus; vv]
<Options>: A: vaccinia virus (strain lister) (aka vaccinia virus lister)
B: varicellovirus
C: avipoxvirus
D: vaccinia virus (strain ankara) (aka vaccinia virus ankara)
E: vaccinia virus (vaccinia virus vv) (aka vaccinia virus)
F: avipoxvirus gb
G: cowpox virus (cpxv (aka cowpox virus))
H: vixey virus
I: turkeypox virus (avipoxvirus clade a2) (aka turkeypox virus)
J: None of the above. | [E; E] |
<Instruct>: Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vv; mouse; mice]
<Options>: A: varicellovirus
B: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
C: western wild mouse (aka mus spretus)
D: crowpox virus
E: turkeypox virus (avipoxvirus clade a2) (aka turkeypox virus)
F: mus <genus> (mice (aka mus <genus>))
G: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
H: mus famulus (servant mouse) (aka mus famulus)
I: avipoxvirus
J: mus terricolor (earth-colored mouse) (aka mus terricolor)
K: house mouse (aka mus musculus)
L: mice (aka mus sp.) (aka mus sp.)
M: vaccinia virus (vaccinia virus vv) (aka vaccinia virus)
N: mus domesticus (aka mus musculus domesticus)
O: None of the above. | [M; K; K] |
<Instruct>: Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vv; mouse; mice]
<Options>: A: vaccinia virus vv (aka vaccinia virus)
B: western wild mouse (aka mus spretus)
C: quailpox virus
D: mus macedonicus (macedonian mouse) (aka mus macedonicus)
E: vixey virus
F: eastern european house mouse (aka mus musculus musculus)
G: mus musculus castaneus (southeastern asian house mouse) (aka mus musculus castaneus)
H: small pox virus (aka variola virus)
I: mouse (aka mus musculus)
J: mus famulus (servant mouse) (aka mus famulus)
K: mice (aka mus sp.) (aka mus sp.)
L: vinces virus
M: mus molossinus (aka mus musculus molossinus)
N: None of the above. | [A; I; I] |
<Instruct>: Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vv; mouse; mice]
<Options>: A: mus famulus (servant mouse) (aka mus famulus)
B: avipoxvirus
C: mus californicus (aka peromyscus californicus)
D: vixey virus
E: vaccinia virus (vaccinia virus vv) (aka vaccinia virus)
F: western wild mouse (aka mus spretus)
G: eastern european house mouse (aka mus musculus musculus)
H: varialvus
I: southeastern asian house mouse (aka mus musculus castaneus)
J: mus macedonicus (macedonian mouse) (aka mus macedonicus)
K: mus musculus (house mouse) (aka mus musculus)
L: mus molossinus (aka mus musculus molossinus)
M: goatpox virus
N: None of the above. | [E; K; K] |
<Instruct>: Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vv; mouse]
<Options>: A: mus terricolor (earth-colored mouse) (aka mus terricolor)
B: quailpox virus
C: mus musculus (house mouse) (aka mus musculus)
D: macedonian mouse (aka mus macedonicus)
E: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
F: fowlpox virus (avipoxvirus clade a1) (aka fowlpox virus)
G: mus musculus castaneus (southeastern asian house mouse) (aka mus musculus castaneus)
H: turkeypox virus (avipoxvirus clade a2) (aka turkeypox virus)
I: horsepox virus
J: vaccinia virus vv (aka vaccinia virus)
K: None of the above. | [J; C] |
<Instruct>: Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vv; mouse]
<Options>: A: variola
B: vixey virus
C: mus terricolor (earth-colored mouse) (aka mus terricolor)
D: eastern european house mouse (aka mus musculus musculus)
E: swine vesicular disease virus
F: macedonian mouse (aka mus macedonicus)
G: varialvus
H: vaccinia virus vv (aka vaccinia virus)
I: mouse (aka mus musculus)
J: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
K: None of the above. | [H; I] |
<Instruct>: Given the context 'The single-knockout animals were more susceptible than wild-type animals, while the RNase L(-/-) PKR(-/-) mice were the most susceptible.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus californicus (aka peromyscus californicus)
B: mus musculus castaneus (southeastern asian house mouse) (aka mus musculus castaneus)
C: mouse (aka mus musculus)
D: mus macedonicus (macedonian mouse) (aka mus macedonicus)
E: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
F: None of the above. | [C] |
<Instruct>: Given the context 'VVDeltaE3L infections of wild-type mice were asymptomatic, demonstrating that E3L plays a critical role in controlling the host immune response.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus <genus> (mice (aka mus <genus>))
B: eastern european house mouse (aka mus musculus musculus)
C: mice (aka mus sp.) (aka mus sp.)
D: mouse (aka mus musculus)
E: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
F: None of the above. | [D] |
<Instruct>: Given the context 'RNase L(-/-) mice showed no disease, whereas 20% of the PKR(-/-) mice succumbed at a dose of 10(8) PFU.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus californicus (aka peromyscus californicus)
B: western wild mouse (aka mus spretus)
C: mus molossinus (aka mus musculus molossinus)
D: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Lethal disease was routinely observed in RNase L(-/-) PKR(-/-) mice inoculated with 10(8) PFU of VVDeltaE3L, with a distinct pathology.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus molossinus (aka mus musculus molossinus)
B: western wild mouse (aka mus spretus)
C: mus terricolor (earth-colored mouse) (aka mus terricolor)
D: mice (aka mus sp.) (aka mus sp.)
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'VVDeltaK3L infections exhibited no differences in virulence among any of the mouse constructs, suggesting that PKR is not the exclusive target of K3L. Surprisingly, VVDeltaK3L did not disseminate to other tissues from the lung.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mouse]
<Options>: A: mus molossinus (aka mus musculus molossinus)
B: mus terricolor (earth-colored mouse) (aka mus terricolor)
C: mus famulus (servant mouse) (aka mus famulus)
D: macedonian mouse (aka mus macedonicus)
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'VVDeltaK3L infections exhibited no differences in virulence among any of the mouse constructs, suggesting that PKR is not the exclusive target of K3L. Surprisingly, VVDeltaK3L did not disseminate to other tissues from the lung.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mouse]
<Options>: A: mus terricolor (earth-colored mouse) (aka mus terricolor)
B: macedonian mouse (aka mus macedonicus)
C: mus molossinus (aka mus musculus molossinus)
D: mus famulus (servant mouse) (aka mus famulus)
E: None of the above. | [E] |
<Instruct>: Given the context 'Amino acid divergence between the CHS domain contributes to the different intracellular behaviour of Family II fungal chitin synthases in Saccharomyces cerevisiae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [saccharomyces cerevisiae]
<Options>: A: saccharomyces pasteurianus (aka saccharomyces pastorianus)
B: saccharomyces hansenii (aka debaryomyces hansenii)
C: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
D: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
E: megasphaera cerevisiae
F: None of the above. | [C] |
<Instruct>: Given the context 'Here we addressed the characterization of Family II fungal CSs by heterologous expression in Saccharomyces cerevisiae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [saccharomyces cerevisiae]
<Options>: A: saccharomyces fermentati (aka torulaspora delbrueckii)
B: saccharomyces drosophilarum (aka kluyveromyces lactis)
C: saccharomyces hansenii (aka debaryomyces hansenii)
D: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
E: saccharomyces oviformis (aka saccharomyces cerevisiae)
F: None of the above. | [E] |
<Instruct>: Given the context 'Full-length CSs from classes V or IV were not functional when expressed in S. cerevisiae and accumulated in different intracellular compartments.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. cerevisiae]
<Options>: A: saccharomyces pasteurianus (aka saccharomyces pastorianus)
B: saccharomyces albicans (aka candida albicans)
C: saccharomyces marxianus (aka kluyveromyces marxianus)
D: megasphaera cerevisiae
E: brewer's yeast (aka saccharomyces cerevisiae)
F: None of the above. | [E] |
<Instruct>: Given the context 'Structural and functional insights into Aeropyrum pernix OppA, a member of a novel archaeal OppA subfamily.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aeropyrum pernix]
<Options>: A: aeropyrum pernix k1 (aeropyrum pernix strain k1) (aka aeropyrum pernix k1)
B: aeropyrum sp.
C: aeropyrum
D: aeropyrum pernix
E: aerobacillus polymyxa (aka paenibacillus polymyxa)
F: None of the above. | [D] |
<Instruct>: Given the context 'In this study we gain insight into the structural and functional characterization of the Aeropyrum pernix oligopeptide-binding protein (OppA(Ap)) previously identified from the extracellular medium of an Aeropyrum pernix cell culture at late stationary phase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aeropyrum pernix]
<Options>: A: perdix torqueola (aka arborophila torqueola)
B: aerobacillus polymyxa (aka paenibacillus polymyxa)
C: aeropyrum
D: aeropyrum pernix
E: aerobacter aerogenes (aka klebsiella aerogenes)
F: None of the above. | [D] |
<Instruct>: Given the context 'Finally, a new OppA from Sulfolobus solfataricus, SSO1288, was purified and preliminarily characterized, allowing the identification of a common structural/genetic organization shared by all "true" archaeal OppA proteins of the dipeptide/oligopeptide class.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sulfolobus solfataricus]
<Options>: A: sulfolobus shibatae (aka saccharolobus shibatae)
B: sulfolobus acidocaldarius susaz
C: sulfitobacter maritimus
D: sulfobacillus benefaciens
E: saccharolobus solfataricus (sulfolobus solfataricus) (aka saccharolobus solfataricus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.
Achromobacter xylosoxidans strain A8 was isolated from soil contaminated with polychlorinated biphenyls.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [achromobacter xylosoxidans a8; achromobacter xylosoxidans strain a8]
<Options>: A: achromobacter xylosoxidans strain a8 (aka achromobacter xylosoxidans a8)
B: achromobacter agilis
C: achromobacter xylosoxidans jcm 9787
D: achromobacter agile
E: achromobacter xylosoxidans x02736
F: achromobacter xilosoxidans (aka achromobacter xylosoxidans)
G: achromobacter lyticus
H: None of the above. | [F; F] |
<Instruct>: Given the context 'Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.
Achromobacter xylosoxidans strain A8 was isolated from soil contaminated with polychlorinated biphenyls.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [achromobacter xylosoxidans a8; achromobacter xylosoxidans strain a8]
<Options>: A: achromobacter xylosoxidans strain nh44784-1996 (aka achromobacter xylosoxidans nh44784-1996)
B: achromobacter agile
C: achromobacter xylosoxidans subsp. xylosoxidans (aka achromobacter xylosoxidans)
D: achromobacter anxifer (achromobacter genogroup 7) (aka achromobacter anxifer)
E: achromobacter lyticus
F: achromobacter agilis
G: achromobacter xylosoxidans jcm 9787
H: None of the above. | [C; C] |
<Instruct>: Given the context 'Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.
Achromobacter xylosoxidans strain A8 was isolated from soil contaminated with polychlorinated biphenyls.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [achromobacter xylosoxidans a8; achromobacter xylosoxidans strain a8]
<Options>: A: achromobacter anxifer (achromobacter genogroup 7) (aka achromobacter anxifer)
B: achromobacter agile
C: achromobacter xylosoxidans jcm 9787
D: achromobacter lyticus
E: achromobacter xylosoxidans strain nh44784-1996 (aka achromobacter xylosoxidans nh44784-1996)
F: achromobacter agilis
G: None of the above. | [G; G] |
<Instruct>: Given the context 'The genome of A. xylosoxidans consists of a 7-Mb chromosome and two large plasmids (98 kb and 248 kb).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. xylosoxidans]
<Options>: A: darwinibacter acetoxidans (aka candidatus darwinibacter acetoxidans)
B: achromobacter xylosoxidans (achromobacter xylosoxidans subsp. xylosoxidans) (aka achromobacter xylosoxidans)
C: oxalis nidulans
D: xanthobacter aminoxidans ("blastobacter aminooxidans" doronina et al. 1984) (aka xanthobacter aminoxidans)
E: achromobacter xylosoxidans x02736
F: None of the above. | [B] |
<Instruct>: Given the context 'Differential responses of Bacillus subtilis rRNA promoters to nutritional stress.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: vibrio subtilis (aka bacillus subtilis)
B: bacillus (aka bacillus <firmicutes>)
C: bacillus albus
D: bacillus aerophilus
E: sporobolus subtilis
F: None of the above. | [A] |
<Instruct>: Given the context 'The in vivo expression levels of four rRNA promoter pairs (rrnp(1)p(2)) of Bacillus subtilis were determined by employing single-copy lacZ fusions integrated at the amyE locus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus (aka bacillus <walking sticks>)
B: bacillus natto (aka bacillus subtilis)
C: bacillus rossius
D: sporobolus subtilis
E: bacillus mesentericus (aka bacillus pumilus)
F: None of the above. | [B] |
<Instruct>: Given the context 'These data reveal the complex nature of B. subtilis rrn promoter regulation in response to stress, and they suggest that the P2 promoters may play a more prominent role in the stringent response.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. subtilis]
<Options>: A: vibrio subtilis (aka bacillus subtilis)
B: bacillus mesentericus (aka bacillus pumilus)
C: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
D: bacillus amylolyticus (aka paenibacillus amylolyticus)
E: sowerbaea subtilis
F: None of the above. | [A] |
<Instruct>: Given the context 'Biochemical characterization of UDP-Gal:GlcNAc-pyrophosphate-lipid Beta-1,4-Galactosyltransferase WfeD, a new enzyme from Shigella boydii type 14 that catalyzes the second step in O-antigen repeating-unit synthesis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [shigella boydii]
<Options>: A: shigella pseudotuberculosis (aka yersinia pseudotuberculosis)
B: shigella equi (aka actinobacillus equuli)
C: shigella flexneri y
D: shigella dysenteriae 1
E: shigella boydii
F: None of the above. | [E] |
<Instruct>: Given the context 'Shigella is a Gram-negative human pathogen that causes diarrhea in humans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; humans]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: gymnopleurus humanus
C: neanderthal (aka homo sapiens neanderthalensis)
D: sphaeria humana (aka sordaria humana)
E: homopus
F: human louse (aka pediculus humanus)
G: macrobiotus sapiens
H: pediculus humanus (human louse) (aka pediculus humanus)
I: cardium humanum (aka glossus humanus)
J: None of the above. | [A; A] |
<Instruct>: Given the context 'Shigella is a Gram-negative human pathogen that causes diarrhea in humans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; humans]
<Options>: A: human (aka homo sapiens)
B: humans (aka homo)
C: cardium humanum (aka glossus humanus)
D: macrobiotus sapiens
E: gymnopleurus humanus
F: homo neanderthalensis (aka homo sapiens neanderthalensis)
G: human body louse (aka pediculus humanus corporis)
H: homo (humans) (aka homo)
I: None of the above. | [A; A] |
<Instruct>: Given the context 'The O antigen of Shigella boydii type 14 consists of repeating oligosaccharide units with the structure [->6-d-Galpalpha1->4-d-GlcpABeta1->6-d-GalpBeta1->4-d-GalpBeta1->4-d-GlcpNAcBeta1->]n.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [shigella boydii]
<Options>: A: shigella sonnei (bacterium sonnei) (aka shigella sonnei)
B: shigella flexneri (escherichia/shigella flexneri) (aka shigella flexneri)
C: shigella rettgeri (aka providencia rettgeri)
D: shigella boydii
E: shigella flexneri y
F: None of the above. | [D] |
<Instruct>: Given the context 'The O antigen of Shigella boydii type 14 consists of repeating oligosaccharide units with the structure [->6-d-Galpalpha1->4-d-GlcpABeta1->6-d-GalpBeta1->4-d-GalpBeta1->4-d-GlcpNAcBeta1->]n.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [shigella boydii]
<Options>: A: shigella rettgeri (aka providencia rettgeri)
B: shigella sonnei (bacterium sonnei) (aka shigella sonnei)
C: shigella flexneri y
D: shigella flexneri (escherichia/shigella flexneri) (aka shigella flexneri)
E: None of the above. | [E] |
<Instruct>: Given the context 'The wfeD gene in the O-antigen gene cluster of Shigella boydii type 14 was proposed to encode a galactosyltransferase (GalT) involved in O-antigen synthesis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [shigella boydii]
<Options>: A: bacillus dysenteriae (aka shigella dysenteriae)
B: bacterium sonnei (aka shigella sonnei)
C: shigella equi (aka actinobacillus equuli)
D: shigella boydii
E: shigella flexneri y
F: None of the above. | [D] |
<Instruct>: Given the context 'WfeD was expressed in Escherichia coli, and the activity was characterized by using UDP-[^3H]Gal as the donor substrate as well as the synthetic acceptor substrate GlcNAcalpha-pyrophosphate-(CH2)11-O-phenyl.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: e. coli (aka escherichia coli)
B: entamoeba coli
C: escherichia coli 99.1793
D: escherichia coli 99.1762
E: escherichia
F: None of the above. | [A] |
<Instruct>: Given the context 'Spatial regulation of histidine kinases governing biofilm formation in Bacillus subtilis.
Bacillus subtilis is able to form architecturally complex biofilms on solid medium due to the production of an extracellular matrix.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
B: bacillus aerius
C: sporobolus subtilis
D: bacillus subtilis (bacillus subtilis/bacillus globigii) (aka bacillus subtilis)
E: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
F: None of the above. | [D] |
<Instruct>: Given the context 'The atypical OmpR/PhoB response regulator ChxR from Chlamydia trachomatis forms homodimers in vivo and binds a direct repeat of nucleotide sequences.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [chlamydia trachomatis]
<Options>: A: chlamydia suis
B: chlamydophila abortus (aka chlamydia abortus)
C: rickettsia trachomae (aka chlamydia trachomatis)
D: chlamydia pecorum (chlamydophila pecorum) (aka chlamydia pecorum)
E: chlamydia avium
F: None of the above. | [C] |
<Instruct>: Given the context 'Altered regulation of the OmpF porin by Fis in Escherichia coli during an evolution experiment and between B and K-12 strains.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
B: escherichia freundii (aka citrobacter freundii)
C: escherichia coli 99.1793
D: entamoeba coli
E: bacillus coli (aka escherichia coli)
F: None of the above. | [E] |
<Instruct>: Given the context 'We previously identified mutations in the global regulator-encoding gene fis that enhanced organismal fitness during a long-term evolution experiment with Escherichia coli.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia coli c
B: escherichia
C: escherichia coli 97.1742
D: escherichia coli (escherichia/shigella coli) (aka escherichia coli)
E: escherichia freundii (aka citrobacter freundii)
F: None of the above. | [D] |
<Instruct>: Given the context 'We found that Fis controls the expression of the major porin-encoding gene ompF in the E. coli B-derived ancestral strain used in the evolution experiment, a relationship that has not been described before.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli]
<Options>: A: escherichia/shigella coli (aka escherichia coli)
B: escherichia coli 99.1762
C: escherichia coli 9.1796
D: escherichia
E: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
F: None of the above. | [A] |
<Instruct>: Given the context 'On the longer time scale, we showed that this regulation of ompF by Fis is absent from the more widely studied K-12 strain and thus is specific to the B strain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [k-12 strain; b strain]
<Options>: A: bacterium o1b
B: escherichia coli k1
C: escherichia coli k-12 (escherichia coli k12) (aka escherichia coli k-12)
D: bacterium k12
E: rumen bacterium
F: bacillus israeli ('bacillus israeli') (aka bacillus israeli)
G: 'klebsiella milletis' (aka klebsiella milletis)
H: subgroup b
I: brucella
J: blastococcus
K: None of the above. | [K; K] |
<Instruct>: Given the context 'On the longer time scale, we showed that this regulation of ompF by Fis is absent from the more widely studied K-12 strain and thus is specific to the B strain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [k-12 strain; b strain]
<Options>: A: 'klebsiella aerogenes' (kruse) taylor et al. 1956 (aka klebsiella pneumoniae)
B: subgroup b
C: klebsiella mobilis (aka klebsiella aerogenes)
D: brucella gallinifaecis (ochrobactrum gallinifaecis) (aka brucella gallinifaecis)
E: bacterium b
F: 'lysobacter lactamgenus' (aka lysobacter lactamgenus)
G: bacterium abortus (aka brucella abortus)
H: bacterium k12
I: 'klebsiella kielensis' (aka klebsiella kielensis)
J: brucella
K: None of the above. | [K; K] |
<Instruct>: Given the context 'On a shorter time scale, this regulatory linkage was lost during 20,000 generations of experimental evolution of the B strain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b strain]
<Options>: A: blastococcus
B: bacterium abortus (aka brucella abortus)
C: bacillus israeli ('bacillus israeli') (aka bacillus israeli)
D: aerobic bacillus
E: brucella haematophila (ochrobactrum haematophilum) (aka brucella haematophila)
F: None of the above. | [F] |
<Instruct>: Given the context 'Fur and the novel regulator YqjI control transcription of the ferric reductase gene yqjH in Escherichia coli.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: entamoeba coli
B: vibrio coli (aka campylobacter coli)
C: 'escherichia faecalis' (aka escherichia faecalis)
D: e. coli (aka escherichia coli)
E: enterobacter aerogenes (aka klebsiella aerogenes)
F: None of the above. | [D] |
<Instruct>: Given the context 'In Escherichia coli, the yqjH gene encodes a putative ferric siderophore reductase that is also part of the Fur regulon.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia coli 99.1762
B: escherichia coli 99.1793
C: vibrio coli (aka campylobacter coli)
D: entamoeba coli
E: enterococcus coli (aka escherichia coli)
F: None of the above. | [E] |
<Instruct>: Given the context 'Here we show that YqjH has ferric reductase activity and is required for iron homeostasis in E. coli.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli]
<Options>: A: escherichia coli b (escherichia coli (strain b)) (aka escherichia coli b)
B: vibrio coli (aka campylobacter coli)
C: escherichia/shigella coli (aka escherichia coli)
D: e. coli w (aka escherichia coli w)
E: entamoeba coli
F: None of the above. | [C] |
<Instruct>: Given the context 'Furthermore, we found that elevated nickel stress levels disrupt iron homeostasis in E. coli and that deletion of yqjH increases nickel toxicity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli]
<Options>: A: escherichia coli b (escherichia coli (strain b)) (aka escherichia coli b)
B: e. coli w (aka escherichia coli w)
C: escherichia coli c
D: bacillus coli (aka escherichia coli)
E: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
F: None of the above. | [D] |
<Instruct>: Given the context 'Genome copy numbers and gene conversion in methanogenic archaea.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanogenic archaea]
<Options>: A: methanobacteriales archaeon
B: methanothermea (aka methanococci)
C: methanoeremita
D: euryarchaeotes (aka methanobacteriota)
E: methanothrix (methanosaeta) (aka methanothrix)
F: None of the above. | [F] |
<Instruct>: Given the context 'Previous studies revealed that one species of methanogenic archaea, Methanocaldococcus jannaschii, is polyploid, while a second species, Methanothermobacter thermoautotrophicus, is diploid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanogenic archaea; methanocaldococcus jannaschii; methanothermobacter thermoautotrophicus]
<Options>: A: methanopyrus kandleri
B: methanothermobacter tenebrarum
C: methanocellales archaeon
D: methanothermobacter thermoflexus (methanobacterium thermoflexum) (aka methanothermobacter thermoflexus)
E: methanobacteria (archaeobacteria) (aka methanobacteria)
F: euryarchaeota archaeon (aka methanobacteriota archaeon)
G: methanocaldococcus
H: methylothermus thermalis
I: methanothermus
J: methanocaldococcus jannaschii (methanococcus jannaschii) (aka methanocaldococcus jannaschii)
K: methanococcaceae archaeon
L: methanocaldococcus indicus
M: methanobacterium thermautotrophicum corrig. zeikus and wolfe 1972 (approved lists 1980) (aka methanothermobacter thermautotrophicus)
N: methanothermea (aka methanococci)
O: methanococcus maripaludis (methanococcus deltae) (aka methanococcus maripaludis)
P: None of the above. | [P; J; M] |
<Instruct>: Given the context 'Previous studies revealed that one species of methanogenic archaea, Methanocaldococcus jannaschii, is polyploid, while a second species, Methanothermobacter thermoautotrophicus, is diploid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanogenic archaea; methanocaldococcus jannaschii; methanothermobacter thermoautotrophicus]
<Options>: A: methanocellales archaeon
B: methanobacteria (archaeobacteria) (aka methanobacteria)
C: euryarchaeota archaeon (aka methanobacteriota archaeon)
D: methanothermobacter thermoflexus (methanobacterium thermoflexum) (aka methanothermobacter thermoflexus)
E: methanococcaceae archaeon
F: methanothermobacter tenebrarum
G: methanococcus maripaludis (methanococcus deltae) (aka methanococcus maripaludis)
H: methanocaldococcus
I: methylothermus thermalis
J: methanothermus
K: methanothermea (aka methanococci)
L: methanopyrus kandleri
M: methanocaldococcus indicus
N: methanocaldococcus jannaschii (methanococcus jannaschii) (aka methanocaldococcus jannaschii)
O: None of the above. | [O; N; O] |
<Instruct>: Given the context 'Previous studies revealed that one species of methanogenic archaea, Methanocaldococcus jannaschii, is polyploid, while a second species, Methanothermobacter thermoautotrophicus, is diploid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanogenic archaea; methanocaldococcus jannaschii; methanothermobacter thermoautotrophicus]
<Options>: A: methanosaeta thermophila (aka methanothrix thermoacetophila)
B: methanocaldococcus bathoardescens
C: methanoeremita
D: archaeobacteria (aka methanobacteria)
E: methanococci archaeon
F: methanococcus deltae (aka methanococcus maripaludis)
G: euryarchaeotes (aka methanobacteriota)
H: methanothermobacter thermophilus (methanobacterium thermophilum) (aka methanothermobacter thermophilus)
I: methanobacterium thermoformicicum (aka methanothermobacter thermautotrophicus)
J: methanobacteriales archaeon
K: methanococcus thermolithotrophicus (aka methanothermococcus thermolithotrophicus)
L: methanococcus jannaschii (aka methanocaldococcus jannaschii)
M: methanococcus mazei (aka methanosarcina mazei)
N: methanopyrus kandleri
O: methanogenium thermophilum (aka methanoculleus thermophilus)
P: None of the above. | [P; L; I] |
<Instruct>: Given the context 'Previous studies revealed that one species of methanogenic archaea, Methanocaldococcus jannaschii, is polyploid, while a second species, Methanothermobacter thermoautotrophicus, is diploid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanogenic archaea; methanocaldococcus jannaschii; methanothermobacter thermoautotrophicus]
<Options>: A: methanocaldococcus jannaschii (methanococcus jannaschii) (aka methanocaldococcus jannaschii)
B: methanobacterium
C: methanobacteria (archaeobacteria) (aka methanobacteria)
D: methanocellales archaeon
E: methylothermus thermalis
F: methanothermobacter tenebrarum
G: methanococcus maripaludis (methanococcus deltae) (aka methanococcus maripaludis)
H: methanocaldococcus bathoardescens
I: methanothermobacter thermautotrophicus (methanobacterium thermautotrophicum corrig. zeikus and wolfe 1972 (approved lists 1980)) (aka methanothermobacter thermautotrophicus)
J: methanococcaceae archaeon
K: methanococcus mazei (aka methanosarcina mazei)
L: methanothermobacter marburgensis
M: methanocaldococcus lauensis
N: methanothermobacter (methanobacter) (aka methanothermobacter)
O: methanobacteria archaeon
P: None of the above. | [P; A; I] |
<Instruct>: Given the context 'To further investigate the distribution of ploidy in methanogenic archaea, species of two additional genera-Methanosarcina acetivorans and Methanococcus maripaludis-were investigated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanogenic archaea; methanosarcina acetivorans; methanococcus maripaludis]
<Options>: A: methanococci archaeon
B: methanosarcina acetivorans
C: methanogenium marinum
D: methanococcoides orientis
E: methanobacterium bryantii
F: methanococci (methanothermea) (aka methanococci)
G: methanosarcina barkeri ms
H: methanogenic archaeon
I: bacillus methanicus (aka methylomonas methanica)
J: methanococcus aeolicus
K: methanococcus maripaludis (methanococcus deltae) (aka methanococcus maripaludis)
L: methanococcus
M: methanothrix (methanosaeta) (aka methanothrix)
N: methanococcus halophilus (aka methanohalophilus halophilus)
O: methyloceanibacter methanicus
P: None of the above. | [P; B; K] |
<Instruct>: Given the context 'To further investigate the distribution of ploidy in methanogenic archaea, species of two additional genera-Methanosarcina acetivorans and Methanococcus maripaludis-were investigated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanogenic archaea; methanosarcina acetivorans; methanococcus maripaludis]
<Options>: A: methanosarcina vacuolata
B: methanosarcina acetivorans
C: methanobacter (aka methanothermobacter)
D: methanoeremita
E: methanobacterium palustre
F: methanococcaceae archaeon
G: methanobacterium
H: methanococcus deltae (aka methanococcus maripaludis)
I: methylomonas paludis
J: methanosarcina barkerii (aka methanosarcina barkeri)
K: methanobacterium bryantii
L: methanosarcina barkeri ms
M: methanobacteriota archaeon (euryarchaeota archaeon) (aka methanobacteriota archaeon)
N: methylobacter marinus
O: methanococci archaeon
P: None of the above. | [P; B; H] |
<Instruct>: Given the context 'To further investigate the distribution of ploidy in methanogenic archaea, species of two additional genera-Methanosarcina acetivorans and Methanococcus maripaludis-were investigated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanogenic archaea; methanosarcina acetivorans; methanococcus maripaludis]
<Options>: A: euryarchaeota archaeon (aka methanobacteriota archaeon)
B: methanobacter (aka methanothermobacter)
C: methamonas methanica (aka methylomonas methanica)
D: methanosarcina acetivorans
E: methanococcus
F: methanobacterium aridiramus
G: methanococcus aeolicus
H: methanogenium marinum
I: methanococci (methanothermea) (aka methanococci)
J: methanococcoides methylutens
K: methanococcus maripaludis (methanococcus deltae) (aka methanococcus maripaludis)
L: methanobacterium palustre
M: methanoeremita
N: methylomonas paludis
O: methanosarcina barkeri ms
P: None of the above. | [P; D; K] |
<Instruct>: Given the context 'M. acetivorans was found to be polyploid during fast growth (t(D)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. acetivorans]
<Options>: A: methylobacillus methanolivorans
B: flavobacterium acetivorans
C: methanosarcina acetivorans
D: stenoxybacter acetivorans
E: acetobacter malorum
F: None of the above. | [C] |
<Instruct>: Given the context 'M. maripaludis has the highest ploidy level found for any archaeal species, with up to 55 genome copies in exponential phase and ca. 30 in stationary phase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. maripaludis]
<Options>: A: methanopyrus kandleri
B: methylobacter marinus
C: maratus maritimus
D: methanococcus maripaludis (methanococcus deltae) (aka methanococcus maripaludis)
E: methanobacterium paludis
F: None of the above. | [D] |
<Instruct>: Given the context 'Making use of a previously constructed heterozygous mutant strain of the polyploid M. maripaludis we could show that in the absence of selection very fast equalization of genomes in M. maripaludis took place probably via a gene conversion mechanism.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. maripaludis]
<Options>: A: methamonas methanica (aka methylomonas methanica)
B: methanococcus maripaludis ll (aka methanococcus maripaludis s2)
C: methanococcus deltae (aka methanococcus maripaludis)
D: methyloradius palustris
E: methylarcula marina (aka paracoccus methylarcula)
F: None of the above. | [C] |
<Instruct>: Given the context 'Identification of binary interactions between human cytomegalovirus virion proteins.
Human cytomegalovirus (HCMV) virions are composed of a DNA-containing nucleocapsid surrounded by a tegument layer and host-derived lipid envelope studded with virally encoded glycoproteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human cytomegalovirus; hcmv]
<Options>: A: human cytomegalovirus (strain 1042) (aka human herpesvirus 5 (strain 1042))
B: murine cytomegalovirus (aka murid betaherpesvirus 1)
C: human herpesvirus 6b (aka human betaherpesvirus 6b)
D: human herpesvirus 1 (aka human alphaherpesvirus 1)
E: human herpesvirus 5 strain ad169 (human cytomegalovirus (strain ad169)) (aka human herpesvirus 5 strain ad169)
F: human herpesvirus 8 (aka human gammaherpesvirus 8)
G: mouse cytomegalovirus
H: human herpesvirus 5 (aka human betaherpesvirus 5)
I: human cytomegalovirus (strain pt) (aka human herpesvirus 5 strain pt)
J: None of the above. | [H; H] |
<Instruct>: Given the context 'Identification of binary interactions between human cytomegalovirus virion proteins.
Human cytomegalovirus (HCMV) virions are composed of a DNA-containing nucleocapsid surrounded by a tegument layer and host-derived lipid envelope studded with virally encoded glycoproteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human cytomegalovirus; hcmv]
<Options>: A: human herpesvirus 5 strain ad169 (human cytomegalovirus (strain ad169)) (aka human herpesvirus 5 strain ad169)
B: human herpesvirus 6b (aka human betaherpesvirus 6b)
C: mouse cytomegalovirus
D: murine cytomegalovirus (aka murid betaherpesvirus 1)
E: human herpesvirus 1 (aka human alphaherpesvirus 1)
F: human cytomegalovirus (strain pt) (aka human herpesvirus 5 strain pt)
G: human herpesvirus 8 (aka human gammaherpesvirus 8)
H: human cytomegalovirus (strain 1042) (aka human herpesvirus 5 (strain 1042))
I: None of the above. | [I; I] |
<Instruct>: Given the context 'Identification of binary interactions between human cytomegalovirus virion proteins.
Human cytomegalovirus (HCMV) virions are composed of a DNA-containing nucleocapsid surrounded by a tegument layer and host-derived lipid envelope studded with virally encoded glycoproteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human cytomegalovirus; hcmv]
<Options>: A: human herpesvirus 2 (aka human alphaherpesvirus 2)
B: herpes virus b (aka macacine alphaherpesvirus 1)
C: human herpesvirus 7 (aka human betaherpesvirus 7)
D: human cytomegalovirus (strain 4654) (aka human herpesvirus 5 (strain 4654))
E: human herpesvirus 5 (aka human betaherpesvirus 5)
F: human herpesvirus 8 (aka human gammaherpesvirus 8)
G: rat cytomegalovirus (aka murid betaherpesvirus 2)
H: cytomegalovirus
I: None of the above. | [E; E] |
<Instruct>: Given the context 'Assembly of HCMV virions is poorly understood, especially with respect to acquisition of the tegument; however, it is thought to involve the stepwise addition of virion components through protein-protein interactions.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcmv]
<Options>: A: human herpesvirus 5 (aka human betaherpesvirus 5)
B: cytomegalovirus
C: human herpesvirus 5 strain ad169 (human cytomegalovirus (strain ad169)) (aka human herpesvirus 5 strain ad169)
D: human herpesvirus 8 (aka human gammaherpesvirus 8)
E: herpesvirus m (aka saimiriine alphaherpesvirus 1)
F: None of the above. | [A] |
<Instruct>: Given the context 'We sought to identify interactions among HCMV virion proteins using yeast two-hybrid analysis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcmv; yeast]
<Options>: A: saccharomyces marxianus (aka kluyveromyces marxianus)
B: saccharomyces ovalis (aka malassezia furfur)
C: human herpesvirus 1 (aka human alphaherpesvirus 1)
D: human herpesvirus 5 (aka human betaherpesvirus 5)
E: murine cytomegalovirus (aka murid betaherpesvirus 1)
F: saccharomyces drosophilarum (aka kluyveromyces lactis)
G: herpes b virus (aka macacine alphaherpesvirus 1)
H: saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (aka saccharomyces cerevisiae)
I: human herpesvirus 7 (aka human betaherpesvirus 7)
J: saccharomyces rouxii (aka zygosaccharomyces rouxii)
K: None of the above. | [D; H] |
<Instruct>: Given the context 'We sought to identify interactions among HCMV virion proteins using yeast two-hybrid analysis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcmv; yeast]
<Options>: A: saccharomyces fermentati (aka torulaspora delbrueckii)
B: human herpesvirus 5 strain ad169 (human cytomegalovirus (strain ad169)) (aka human herpesvirus 5 strain ad169)
C: brewer's yeast (aka saccharomyces cerevisiae)
D: saccharomyces rouxii (aka zygosaccharomyces rouxii)
E: rodent herpesvirus
F: saccharomycodes
G: cytomegalovirus
H: human herpesvirus type 5 (aka human betaherpesvirus 5)
I: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
J: human betaherpesvirus 6a (human herpesvirus 6a) (aka human betaherpesvirus 6a)
K: None of the above. | [H; C] |
<Instruct>: Given the context 'We identified 24 interactions among HCMV virion proteins, including 13 novel interactions among tegument proteins and one novel interaction between capsid proteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcmv]
<Options>: A: cytomegalovirus
B: human betaherpesvirus 6a (human herpesvirus 6a) (aka human betaherpesvirus 6a)
C: human herpesvirus type 5 (aka human betaherpesvirus 5)
D: japanese cytomegalovirus
E: porcine cytomegalovirus (aka suid betaherpesvirus 2)
F: None of the above. | [C] |
<Instruct>: Given the context 'In addition, we demonstrate three of these interactions in the context of HCMV infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcmv]
<Options>: A: human herpesvirus 6b (aka human betaherpesvirus 6b)
B: human herpesvirus 8 (aka human gammaherpesvirus 8)
C: human betaherpesvirus 5 (human herpesvirus type 5) (aka human betaherpesvirus 5)
D: murine cytomegalovirus (aka murid betaherpesvirus 1)
E: herpes b virus (aka macacine alphaherpesvirus 1)
F: None of the above. | [C] |
<Instruct>: Given the context 'This study reveals several new protein-protein interactions among HCMV tegument proteins, some of which are likely important for HCMV replication and pathogenesis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcmv]
<Options>: A: human betaherpesvirus 6a (human herpesvirus 6a) (aka human betaherpesvirus 6a)
B: herpesvirus m (aka saimiriine alphaherpesvirus 1)
C: human herpesvirus 5 (aka human betaherpesvirus 5)
D: herpes b virus (aka macacine alphaherpesvirus 1)
E: human herpesvirus 8 (aka human gammaherpesvirus 8)
F: None of the above. | [C] |
<Instruct>: Given the context 'This study reveals several new protein-protein interactions among HCMV tegument proteins, some of which are likely important for HCMV replication and pathogenesis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcmv]
<Options>: A: herpes b virus (aka macacine alphaherpesvirus 1)
B: human herpesvirus 8 (aka human gammaherpesvirus 8)
C: human betaherpesvirus 6a (human herpesvirus 6a) (aka human betaherpesvirus 6a)
D: herpesvirus m (aka saimiriine alphaherpesvirus 1)
E: None of the above. | [E] |
<Instruct>: Given the context 'Acyl-homoserine lactone binding to and stability of the orphan Pseudomonas aeruginosa quorum-sensing signal receptor QscR.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa]
<Options>: A: pseudomonas wisconsinensis ('pseudomonas wisconsinensis') (aka pseudomonas wisconsinensis)
B: bacterium pyocyaneum (aka pseudomonas aeruginosa)
C: pseudomonas poae
D: pseudomonas nosocomialis (aka stutzerimonas nosocomialis)
E: pseudomonas ovalis (aka pseudomonas putida)
F: None of the above. | [B] |
<Instruct>: Given the context 'The Pseudomonas aeruginosa transcription factor QscR responds to a variety of fatty acyl-homoserine lactones (HSLs), including N-3-oxododecanoyl-HSL (3OC12-HSL), which is produced and detected by the P. aeruginosa quorum-sensing circuit LasI', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa; p. aeruginosa]
<Options>: A: pasteurella pestis (aka yersinia pestis)
B: bacterium pyocyaneum (aka pseudomonas aeruginosa)
C: pseudomonas aeruginosa c
D: pasteurella pseudotuberculosis (aka yersinia pseudotuberculosis)
E: aerobacillus polymyxa (aka paenibacillus polymyxa)
F: pseudomonas haemolytica
G: pseudomonas poae
H: pasteurella aerogenes (aka [pasteurella] aerogenes)
I: pseudomonas nosocomialis (aka stutzerimonas nosocomialis)
J: None of the above. | [B; B] |
<Instruct>: Given the context 'The Pseudomonas aeruginosa transcription factor QscR responds to a variety of fatty acyl-homoserine lactones (HSLs), including N-3-oxododecanoyl-HSL (3OC12-HSL), which is produced and detected by the P. aeruginosa quorum-sensing circuit LasI', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa; p. aeruginosa]
<Options>: A: pasteurella
B: aerobacillus polymyxa (aka paenibacillus polymyxa)
C: pasteuria
D: pseudomonas wisconsinensis ('pseudomonas wisconsinensis') (aka pseudomonas wisconsinensis)
E: pseudomonas aeruginosa c
F: pseudomonas paralactis
G: pasteurella pestis (aka yersinia pestis)
H: pseudomonas poae
I: pseudomonas pyocyanea (aka pseudomonas aeruginosa)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'We also obtained soluble QscR from recombinant Escherichia coli grown in the presence of N-3-oxohexanoyl-HSL (3OC6-HSL) instead of 3OC12-HSL, and because 3OC6-HSL bound much more loosely to QscR than other acyl-HSLs tested, we were able to exchange 3OC6-HSL with other acyl-HSLs in vitro and then estimate binding affinities of QscR for different acyl-HSLs and for target DNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia coli 99.1793
B: escherichia freundii (aka citrobacter freundii)
C: 'escherichia faecalis' (aka escherichia faecalis)
D: escherichia coli (escherichia/shigella coli) (aka escherichia coli)
E: vibrio coli (aka campylobacter coli)
F: None of the above. | [D] |
<Instruct>: Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis delta virus; hdv; hepatitis b virus]
<Options>: A: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
B: durham virus
C: hepatitis b virus, hbv (aka hepatitis b virus)
D: hepatitis d virus (isolate american) (aka hepatitis delta virus (isolate american))
E: brdv (aka broadhaven virus) (aka broadhaven virus)
F: hepatovirus d
G: horseshoe bat hepatitis b virus (hbhbv) (aka horseshoe bat hepatitis b virus)
H: hepatitis delta virus (isolate us-2) (hepatitis d virus (isolate us-2)) (aka hepatitis delta virus (isolate us-2))
I: dhv-1 (aka avihepatovirus a)
J: hdv-2 (aka deltavirus japanense)
K: hepatitis a virus (aka hepatovirus a)
L: hepatitis delta virus hdv (aka hepatitis delta virus)
M: hepatitis x virus (hxhv (aka hepatitis x virus))
N: hepatovirus b
O: None of the above. | [L; L; C] |
<Instruct>: Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis delta virus; hdv; hepatitis b virus]
<Options>: A: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
B: hepatitis d virus (isolate italian) (aka hepatitis delta virus (isolate italian))
C: hepatitis a virus (aka hepatovirus a)
D: hihdivirus
E: hepatitis delta virus (isolate us-2) (hepatitis d virus (isolate us-2)) (aka hepatitis delta virus (isolate us-2))
F: avian hdv-like agent
G: hepatitis delta virus (hdv (aka hepatitis delta virus))
H: hepatitis b virus, hbv (aka hepatitis b virus)
I: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
J: hepatitis x virus (hxhv (aka hepatitis x virus))
K: hepatitis d virus (isolate tw2476) (aka hepatitis delta virus (isolate tw2476))
L: hdv-2 (aka deltavirus japanense)
M: hepatitis gb virus b (aka gb virus-b)
N: hepatitis b virus 2
O: None of the above. | [G; G; H] |
<Instruct>: Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis delta virus; hdv; hepatitis b virus]
<Options>: A: hihdivirus
B: hepatitis b virus hbv (aka hepatitis b virus)
C: hbhbv (aka horseshoe bat hepatitis b virus)
D: hepatitis d virus 1
E: human hepatitis b virus (aka hepatitis b virus)
F: brdv (aka broadhaven virus) (aka broadhaven virus)
G: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
H: hdv-4 (aka deltavirus taiwanense)
I: hepatitis x virus (hxhv (aka hepatitis x virus))
J: hordeivirus
K: duck hepatitis b virus (dhbv (aka duck hepatitis b virus))
L: human hepatitis a virus (hhav (aka human hepatitis a virus))
M: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
N: hepatovirus d
O: None of the above. | [M; M; B] |
<Instruct>: Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv]
<Options>: A: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
B: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
C: hbv genotype b (aka hepatitis b virus genotype b)
D: duck hepatitis b virus (dhbv (aka duck hepatitis b virus))
E: hepatitis b virus, hbv (aka hepatitis b virus)
F: None of the above. | [E] |
<Instruct>: Given the context 'There are eight reported genotypes of HDV with unexplained variations in their geographical distribution and pathogenicity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv]
<Options>: A: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
B: hihdivirus
C: durham virus
D: deltavirus italiense (hdv-1) (aka deltavirus italiense)
E: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
F: None of the above. | [A] |
<Instruct>: Given the context 'The hepatitis D virion is composed of a coat of HBV envelope proteins surrounding the nucleocapsid, which consists of a single-stranded, circular RNA genome complexed with delta antigen, the viral protein.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis d; hbv]
<Options>: A: hepatitis gb virus b (aka gb virus-b)
B: non-human hbv
C: hepatitis delta virus hdv (aka hepatitis delta virus)
D: hepatitis d virus 4
E: dhbv (aka duck hepatitis b virus) (aka duck hepatitis b virus)
F: hepatitis b virus, hbv (aka hepatitis b virus)
G: hepatitis d virus 3
H: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
I: hepatitis a virus (aka hepatovirus a)
J: hepatovirus d
K: None of the above. | [C; F] |
<Instruct>: Given the context 'The hepatitis D virion is composed of a coat of HBV envelope proteins surrounding the nucleocapsid, which consists of a single-stranded, circular RNA genome complexed with delta antigen, the viral protein.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis d; hbv]
<Options>: A: hbv-i (aka hepatitis b virus genotype i)
B: hepatitis delta virus (hdv (aka hepatitis delta virus))
C: hepatitis a virus hav (aka human hepatitis a virus)
D: hepatitis d virus (isolate tw2476) (aka hepatitis delta virus (isolate tw2476))
E: hepatitis b virus hbv (aka hepatitis b virus)
F: non-human hbv
G: hepatitis d virus 1
H: hepatitis d virus 2
I: hepatitis gb virus b (aka gb virus-b)
J: hbhbv (aka horseshoe bat hepatitis b virus)
K: None of the above. | [B; E] |
<Instruct>: Given the context 'HDV is clinically important because although it suppresses HBV replication, it causes severe liver disease with rapid progression to cirrhosis and hepatic decompensation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv; hbv]
<Options>: A: hbv-i (aka hepatitis b virus genotype i)
B: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
C: hordeivirus
D: hdv-2 (aka deltavirus japanense)
E: hepatitis b virus genotype b (hbv genotype b) (aka hepatitis b virus genotype b)
F: hihdivirus
G: hepatitis b-type viruses (aka hepadnaviridae)
H: dhv-1 (aka avihepatovirus a)
I: hepatitis b virus (hbv) (aka hepatitis b virus)
J: hepatitis delta virus (hdv (aka hepatitis delta virus))
K: None of the above. | [J; I] |
<Instruct>: Given the context 'HDV is clinically important because although it suppresses HBV replication, it causes severe liver disease with rapid progression to cirrhosis and hepatic decompensation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv; hbv]
<Options>: A: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
B: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
C: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
D: durham virus
E: horseshoe bat hepatitis b virus (hbhbv) (aka horseshoe bat hepatitis b virus)
F: hepatitis b virus genotype b (hbv genotype b) (aka hepatitis b virus genotype b)
G: human type d retrovirus (human retrovirus type d) (aka human type d retrovirus)
H: hepatitis b virus hbv (aka hepatitis b virus)
I: hepatitis delta virus (hdv (aka hepatitis delta virus))
J: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
K: None of the above. | [I; H] |
<Instruct>: Given the context 'The prevalence of HDV is declining in some endemic areas but increasing in northern and central Europe because of immigration.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv]
<Options>: A: hepatitis delta virus hdv (aka hepatitis delta virus)
B: hihdivirus
C: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
D: human enterovirus d (aka enterovirus d)
E: hdv-2 (aka deltavirus japanense)
F: None of the above. | [A] |
<Instruct>: Given the context 'Treatment of HDV is with pegylated interferon alfa; however, response rates are poor.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv]
<Options>: A: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
B: dhv-1 (aka avihepatovirus a)
C: hihdivirus
D: hdv-1 (aka deltavirus italiense)
E: human enterovirus d (aka enterovirus d)
F: None of the above. | [A] |
<Instruct>: Given the context 'Increased understanding of the molecular virology of HDV will identify novel therapeutic targets for this most severe form of chronic viral hepatitis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv]
<Options>: A: avian hdv-like agent
B: brdv (aka broadhaven virus) (aka broadhaven virus)
C: deltavirus italiense (hdv-1) (aka deltavirus italiense)
D: hihdivirus
E: hepatitis d virus (aka hepatitis delta virus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Role of the F1 region in the Escherichia coli aerotaxis receptor Aer.
In Escherichia coli, the aerotaxis receptor Aer is an atypical receptor because it senses intracellular redox potential.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia coli 99.1793
B: escherichia coli c
C: escherichia coli (escherichia/shigella coli) (aka escherichia coli)
D: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
E: vibrio coli (aka campylobacter coli)
F: None of the above. | [C] |
<Instruct>: Given the context 'The peptidoglycan-binding protein FimV promotes assembly of the Pseudomonas aeruginosa type IV pilus secretin.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa]
<Options>: A: pseudomonas paralactis
B: pseudomonas aeruginosa pa1
C: pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (aka pseudomonas aeruginosa)
D: pseudomonas wisconsinensis ('pseudomonas wisconsinensis') (aka pseudomonas wisconsinensis)
E: pseudomonas rugosa (aka pseudomonas putida)
F: None of the above. | [C] |
<Instruct>: Given the context 'The peptidoglycan-binding protein FimV promotes assembly of the Pseudomonas aeruginosa type IV pilus secretin.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa]
<Options>: A: pseudomonas aeruginosa pa1
B: pseudomonas paralactis
C: pseudomonas rugosa (aka pseudomonas putida)
D: pseudomonas wisconsinensis ('pseudomonas wisconsinensis') (aka pseudomonas wisconsinensis)
E: None of the above. | [E] |
<Instruct>: Given the context 'The Pseudomonas aeruginosa inner membrane protein FimV is among several proteins of unknown function required for type IV pilus-mediated twitching motility, arising from extension and retraction of pili from their site of assembly in the inner membrane.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas aeruginosa]
<Options>: A: pseudomonas aeruginosa pa1
B: pseudomonas polycolor (aka pseudomonas aeruginosa)
C: pseudomonas ovalis (aka pseudomonas putida)
D: pseudomonas wisconsinensis ('pseudomonas wisconsinensis') (aka pseudomonas wisconsinensis)
E: pseudomonas oryzae
F: None of the above. | [B] |
<Instruct>: Given the context 'Although fimV mutants are nonmotile, they are susceptible to killing by pilus-specific bacteriophage, a hallmark of retractable surface pili.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacteriophage]
<Options>: A: bacteriophage sp (aka enterobacteria phage sp)
B: bacteriophage sp. (unidentified bacteriophage) (aka bacteriophage sp.)
C: bacterial viruses (aka plasmaviridae)
D: escherichia phage
E: inovirus
F: None of the above. | [B] |
<Instruct>: Given the context 'Human resources for health in southeast Asia: shortages, distributional challenges, and international trade in health services.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: sphaeria humana (aka sordaria humana)
C: gymnopleurus humanus
D: macrobiotus sapiens
E: human body louse (aka pediculus humanus corporis)
F: None of the above. | [A] |
<Instruct>: Given the context 'To ensure that vital human resources for health are available to meet the needs of the populations that they serve, migration management and retention strategies need to be integrated into ongoing efforts to strengthen health systems in southeast Asia.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: sphaeria humana (aka sordaria humana)
B: homo sapiens (human) (aka homo sapiens)
C: neandertal (aka homo sapiens neanderthalensis)
D: gymnopleurus humanus
E: carcharhinus humani
F: None of the above. | [B] |
<Instruct>: Given the context 'Double-antigen sandwich ELISA for the detection of anti-hepatitis C virus antibodies.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis c virus]
<Options>: A: hepatitis a virus (aka hepatovirus a)
B: hepatitis b virus type c (aka hepatitis b virus genotype c)
C: human hepatitis a virus (hhav (aka human hepatitis a virus))
D: hbv (aka hepatitis b virus) (aka hepatitis b virus)
E: hcv (aka hepacivirus hominis) (aka hepacivirus hominis)
F: None of the above. | [E] |
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