instruction stringlengths 145 921 | input stringlengths 76 601 | response stringclasses 6 values |
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<Instruct>: Given the context 'Since 1998, the rapid emergence of multi-azole-resistance (MAR) was observed in Aspergillus fumigatus in the Netherlands.', select the correct biomedical concept corresponding to 'aspergillus fumigatus'. Answer using one of the provided options. | <Options>: A: sartorya fumigata (aka aspergillus fumigatus)
B: aspergillus aerius
C: aspergillus terrestris (aka aspergillus terreus)
D: aspergillus aureus
E: eurotium oryzae (aka aspergillus oryzae)
F: None of the above. | A |
<Instruct>: Given the context 'In this study, we show that molecular dynamics simulations combined with site-directed mutagenesis of amino acid substitutions in the cyp51A gene, correlate to the structure-function relationship of the L98H substitution conferring to MAR in A. fumigatus.', select the correct biomedical concept corresponding to 'a. fumigatus'. Answer using one of the provided options. | <Options>: A: aspergillus aureus
B: aspergillus terreus (aspergillus terrestris) (aka aspergillus terreus)
C: aspergillus fumigatiaffinis
D: aspergillus terricola
E: sartorya fumigata (aka aspergillus fumigatus)
F: None of the above. | E |
<Instruct>: Given the context 'Furthermore, the amino acid leucine in codon 98 in A. fumigatus is highly conserved and important for maintaining the structure of the CYP51A protein that is essential for azole docking.
', select the correct biomedical concept corresponding to 'a. fumigatus'. Answer using one of the provided options. | <Options>: A: aspergillus aerius
B: aspergillus aureus
C: aspergillus cerealis
D: aspergillus fumigatiaffinis
E: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
F: None of the above. | E |
<Instruct>: Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', select the correct biomedical concept corresponding to 'red-backed shrike'. Answer using one of the provided options. | <Options>: A: red-headed trogon (aka harpactes erythrocephalus)
B: southern grey shrike (aka lanius meridionalis)
C: rufous-tailed shrike (aka lanius isabellinus)
D: lanius collurio (red-backed shrike) (aka lanius collurio)
E: harpactus tauricus
F: None of the above. | D |
<Instruct>: Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', select the correct biomedical concept corresponding to 'lanius collurio'. Answer using one of the provided options. | <Options>: A: lanius collurio (red-backed shrike) (aka lanius collurio)
B: laniarius
C: collurio lahtora (aka lanius meridionalis lahtora)
D: lanius collurioides
E: carthamus lanatus
F: None of the above. | A |
<Instruct>: Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', select the correct biomedical concept corresponding to 'lanius collurio'. Answer using one of the provided options. | <Options>: A: lanius barbarus (aka laniarius barbarus)
B: carthamus lanatus
C: lanius collurioides
D: croton lanatus
E: laniarius
F: None of the above. | F |
<Instruct>: Given the context 'Our findings suggest negative density-dependent regulation of red-backed shrike breeding populations and are consistent with the long-standing hypothesis that conditions in the African staging and wintering areas influence population numbers of species breeding in Europe.', select the correct biomedical concept corresponding to 'red-backed shrike'. Answer using one of the provided options. | <Options>: A: red-backed shrike (aka lanius collurio)
B: steppe grey shrike (aka lanius pallidirostris)
C: chinese grey shrike (aka lanius sphenocercus)
D: long-tailed shrike (aka lanius schach)
E: harpactus tauricus
F: None of the above. | A |
<Instruct>: Given the context 'Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress.
', select the correct biomedical concept corresponding to 'escherichia coli'. Answer using one of the provided options. | <Options>: A: escherichia
B: bacterium coli commune (aka escherichia coli)
C: escherichia coli c
D: escherichia freundii (aka citrobacter freundii)
E: enterobacter aerogenes (aka klebsiella aerogenes)
F: None of the above. | B |
<Instruct>: Given the context 'Mapping of the Neisseria meningitidis NadA cell-binding site: relevance of predicted {alpha}-helices in the NH2-terminal and dimeric coiled-coil regions.
', select the correct biomedical concept corresponding to 'neisseria meningitidis'. Answer using one of the provided options. | <Options>: A: neisseria meningitidis n 18/01
B: neisseria meningitidis 2000081
C: neisseria meningitidis 2002038
D: neisseria lactamica (neisseria lactamicus) (aka neisseria lactamica)
E: micrococcus meningitidis (aka neisseria meningitidis)
F: None of the above. | E |
<Instruct>: Given the context 'NadA is a trimeric autotransporter protein of Neisseria meningitidis belonging to the group of oligomeric coiled-coil adhesins.', select the correct biomedical concept corresponding to 'neisseria meningitidis'. Answer using one of the provided options. | <Options>: A: neisseria meningitidis 2003051
B: neisseria meningitidis (micrococcus meningitidis cerebrospinalis) (aka neisseria meningitidis)
C: neisseria meningitidis 2002030
D: neisseria meningitidis 2003022
E: neisseria meningitidis 2002020
F: None of the above. | B |
<Instruct>: Given the context 'It is implicated in the colonization of the human upper respiratory tract by hypervirulent serogroup B N. meningitidis strains and is part of a multiantigen anti-serogroup B vaccine.', select the correct biomedical concept corresponding to 'human'. Answer using one of the provided options. | <Options>: A: great apes (aka hominidae)
B: neanderthal man (aka homo sapiens neanderthalensis)
C: homo (humans) (aka homo)
D: human (aka homo sapiens)
E: sphaeria humana (aka sordaria humana)
F: None of the above. | D |
<Instruct>: Given the context 'It is implicated in the colonization of the human upper respiratory tract by hypervirulent serogroup B N. meningitidis strains and is part of a multiantigen anti-serogroup B vaccine.', select the correct biomedical concept corresponding to 'n. meningitidis'. Answer using one of the provided options. | <Options>: A: neisseria meningitidis n 18/01
B: neisseria meningitidis serogroup z
C: neisseria meningitidis 2003051
D: micrococcus meningitidis cerebrospinalis (aka neisseria meningitidis)
E: neisseria meningitidis (serogroup a) (aka neisseria meningitidis serogroup a)
F: None of the above. | D |
<Instruct>: Given the context 'In this study, to better define the NadA cell binding site, we exploited (i) a panel of NadA mutants lacking sequences along the coiled-coil stalk and (ii) several oligoclonal rabbit antibodies, and their relative Fab fragments, directed to linear epitopes distributed along the NadA ectodomain.', select the correct biomedical concept corresponding to 'rabbit'. Answer using one of the provided options. | <Options>: A: oryctolagus cuniculus (japanese white rabbit) (aka oryctolagus cuniculus)
B: marsh rabbit (aka sylvilagus palustris)
C: oryctolagus cuniculus cuniculus (lepus cuniculus cuniculus) (aka oryctolagus cuniculus cuniculus)
D: riverine rabbit (aka bunolagus monticularis)
E: swamp rabbit (aka sylvilagus aquaticus)
F: None of the above. | A |
<Instruct>: Given the context 'The Burkholderia cenocepacia LysR-type transcriptional regulator ShvR influences expression of quorum-sensing, protease, type II secretion, and afc genes.
Burkholderia cenocepacia is a significant opportunistic pathogen in individuals with cystic fibrosis.', select the correct biomedical concept corresponding to 'burkholderia cenocepacia'. Answer using one of the provided options. | <Options>: A: burkholderia orbicola (burkholderia servocepacia) (aka burkholderia orbicola)
B: burkholderia cepacia genomovar iii (aka burkholderia cenocepacia)
C: burkholderia cepacia jbk9
D: burkholderia cepacia genomovar ii (aka burkholderia multivorans)
E: burkholderia contaminans
F: None of the above. | B |
<Instruct>: Given the context 'The Burkholderia cenocepacia LysR-type transcriptional regulator ShvR influences expression of quorum-sensing, protease, type II secretion, and afc genes.
Burkholderia cenocepacia is a significant opportunistic pathogen in individuals with cystic fibrosis.', select the correct biomedical concept corresponding to 'burkholderia cenocepacia'. Answer using one of the provided options. | <Options>: A: burkholderia cenocepacia hi2424
B: burkholderia cepacia j2315 (aka burkholderia cenocepacia j2315)
C: burkholderia servocepacia (aka burkholderia orbicola)
D: burkholderia cepacia (burkholderia cepacia genomovar i) (aka burkholderia cepacia)
E: burkholderia cepacia genomovar iii (aka burkholderia cenocepacia)
F: None of the above. | E |
<Instruct>: Given the context 'Only the shvR mutation resulted in reduced antifungal activity against Rhizoctonia solani.', select the correct biomedical concept corresponding to 'rhizoctonia solani'. Answer using one of the provided options. | <Options>: A: rhizoctonia leguminicola (aka slafractonia leguminicola)
B: trichoderma solani
C: helminthosporium solani
D: neoroussoella solani (roussoella solani) (aka neoroussoella solani)
E: rhizobium soli
F: None of the above. | F |
<Instruct>: Given the context 'Only the shvR mutation resulted in reduced antifungal activity against Rhizoctonia solani.', select the correct biomedical concept corresponding to 'rhizoctonia solani'. Answer using one of the provided options. | <Options>: A: trichocladium solani
B: sclerotium fumigatum (aka rhizoctonia fumigata)
C: pucciniosira solani
D: rhizoctonia solani virus
E: trichoderma solani
F: None of the above. | F |
<Instruct>: Given the context 'Assembly of the type II secretion system: identification of ExeA residues critical for peptidoglycan binding and secretin multimerization.
Aeromonas hydrophila secretes a number of protein toxins across the outer membrane via the type II secretion system (T2SS).', select the correct biomedical concept corresponding to 'aeromonas hydrophila'. Answer using one of the provided options. | <Options>: A: aeromonas aquatica
B: pseudomonas hydrophila (aka aeromonas hydrophila)
C: aeromonas punctata (aka aeromonas caviae)
D: aeromonas enterica
E: aeromonas piscicola
F: None of the above. | B |
<Instruct>: Given the context 'Functional analysis of molybdopterin biosynthesis in mycobacteria identifies a fused molybdopterin synthase in Mycobacterium tuberculosis.
', select the correct biomedical concept corresponding to 'mycobacterium tuberculosis'. Answer using one of the provided options. | <Options>: A: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
B: mycolicibacterium phlei (mycobacterium phlei) (aka mycolicibacterium phlei)
C: mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (aka mycobacterium tuberculosis)
D: mycobacterium bovis (aka mycobacterium tuberculosis variant bovis)
E: mycobacterium abscessus 1948 (aka mycobacteroides abscessus 1948)
F: None of the above. | C |
<Instruct>: Given the context 'A mutant of M. tuberculosis lacking the moaA1-moaD1 gene cluster and a derivative in which moaD2 was also deleted were significantly impaired for growth in media containing nitrate as a sole nitrogen source, indicating a reduced availability of MoCo to support the assimilatory function of the MoCo-dependent nitrate reductase, NarGHI.', select the correct biomedical concept corresponding to 'm. tuberculosis'. Answer using one of the provided options. | <Options>: A: bacterium tuberculosis (aka mycobacterium tuberculosis)
B: mycobacterium tuberculosis strain h37rv (aka mycobacterium tuberculosis h37rv)
C: mycobacterium tuberculosis strain h37ra (aka mycobacterium tuberculosis h37ra)
D: mycobacterium abscessus (aka mycobacteroides abscessus)
E: mycobacterium tuberculosis h37rvae
F: None of the above. | A |
<Instruct>: Given the context 'The M. tuberculosis moaD and moaE homologs were further analyzed by expressing these genes in mutant strains of M. smegmatis that lacked one or both of the sole molybdopterin (MPT) synthase-encoding genes, moaD2 and moaE2, and were unable to grow on nitrate, presumably as a result of the loss of MoCo-dependent nitrate assimilatory activity.', select the correct biomedical concept corresponding to 'm. tuberculosis'. Answer using one of the provided options. | <Options>: A: bacterium tuberculosis (aka mycobacterium tuberculosis)
B: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
C: mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium)
D: mycobacterium phlei (aka mycolicibacterium phlei)
E: bacillus tuberculosis gallinarum (aka mycobacterium avium)
F: None of the above. | A |
<Instruct>: Given the context 'The M. tuberculosis moaD and moaE homologs were further analyzed by expressing these genes in mutant strains of M. smegmatis that lacked one or both of the sole molybdopterin (MPT) synthase-encoding genes, moaD2 and moaE2, and were unable to grow on nitrate, presumably as a result of the loss of MoCo-dependent nitrate assimilatory activity.', select the correct biomedical concept corresponding to 'm. smegmatis'. Answer using one of the provided options. | <Options>: A: mycobacterium novum
B: mycobacterium phlei (aka mycolicibacterium phlei)
C: mycobacterium marinum (mycobacterium platypoecilus) (aka mycobacterium marinum)
D: mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980)) (aka mycolicibacterium smegmatis)
E: mycobacterium vaccae (aka mycolicibacterium vaccae)
F: None of the above. | D |
<Instruct>: Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', select the correct biomedical concept corresponding to 'm. tuberculosis'. Answer using one of the provided options. | <Options>: A: mycobacterium phlei (aka mycolicibacterium phlei)
B: mycobacterium tuberculosis strain h37rv (aka mycobacterium tuberculosis h37rv)
C: mycobacterium tuberculosis h37rvae
D: mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (aka mycobacterium tuberculosis)
E: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
F: None of the above. | D |
<Instruct>: Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', select the correct biomedical concept corresponding to 'm. smegmatis'. Answer using one of the provided options. | <Options>: A: mycobacterium anthracenicum ('mycobacterium anthracenicum') (aka mycobacterium anthracenicum)
B: mycobacterium lactis ('mycobacterium lactis') (aka mycobacterium lactis)
C: mycobacterium peregrinum (aka mycolicibacterium peregrinum)
D: mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (aka mycolicibacterium smegmatis)
E: mycobacterium coloregonium (aka mycobacterium talmoniae)
F: None of the above. | D |
<Instruct>: Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', select the correct biomedical concept corresponding to 'm. tuberculosis'. Answer using one of the provided options. | <Options>: A: mycobacterium tuberculosis typus humanus (aka mycobacterium tuberculosis)
B: mycobacterium tuberculosis h37rvae
C: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
D: mycobacterium phlei (aka mycolicibacterium phlei)
E: mycobacterium abscessus (aka mycobacteroides abscessus)
F: None of the above. | A |
<Instruct>: Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', select the correct biomedical concept corresponding to 'm. smegmatis'. Answer using one of the provided options. | <Options>: A: mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51) (aka mycolicibacterium smegmatis mc2 51)
B: mycobacterium coloregonium (aka mycobacterium talmoniae)
C: mycobacterium lactis ('mycobacterium lactis') (aka mycobacterium lactis)
D: mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (aka mycolicibacterium smegmatis)
E: mycobacterium anthracenicum ('mycobacterium anthracenicum') (aka mycobacterium anthracenicum)
F: None of the above. | D |
<Instruct>: Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', select the correct biomedical concept corresponding to 'm. tuberculosis'. Answer using one of the provided options. | <Options>: A: mycobacterium tuberculosis h37rvae
B: mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium)
C: mycobacterium bovis (aka mycobacterium tuberculosis variant bovis)
D: mycobacterium tuberculosis strain h37rv (aka mycobacterium tuberculosis h37rv)
E: bacillus tuberculosis (aka mycobacterium tuberculosis)
F: None of the above. | E |
<Instruct>: Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', select the correct biomedical concept corresponding to 'm. tuberculosis'. Answer using one of the provided options. | <Options>: A: mycobacterium tuberculosis h37rvae
B: mycobacterium phlei (aka mycolicibacterium phlei)
C: mycobacterium bovis (aka mycobacterium tuberculosis variant bovis)
D: bacillus tuberculosis gallinarum (aka mycobacterium avium)
E: mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium)
F: None of the above. | F |
<Instruct>: Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', select the correct biomedical concept corresponding to 'm. smegmatis'. Answer using one of the provided options. | <Options>: A: mycobacterium peregrinum (aka mycolicibacterium peregrinum)
B: mycobacterium lactis ('mycobacterium lactis') (aka mycobacterium lactis)
C: mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (aka mycolicibacterium smegmatis)
D: mycobacterium phlei (aka mycolicibacterium phlei)
E: mycobacterium murale (aka mycolicibacterium murale)
F: None of the above. | C |
<Instruct>: Given the context 'By implicating multiple synthase-encoding homologs in MoCo biosynthesis, these results suggest that important cellular functions may be served by their expansion in M. tuberculosis.
', select the correct biomedical concept corresponding to 'm. tuberculosis'. Answer using one of the provided options. | <Options>: A: mycobacterium tuberculosis strain h37rv (aka mycobacterium tuberculosis h37rv)
B: mycobacterium tuberculosis subsp. tuberculosis
C: bacterium tuberculosis (aka mycobacterium tuberculosis)
D: mycobacterium tuberculosis h37rvae
E: mycobacterium bovis (aka mycobacterium tuberculosis variant bovis)
F: None of the above. | C |
<Instruct>: Given the context 'The nodulation of alfalfa by the acid-tolerant Rhizobium sp. strain LPU83 does not require sulfated forms of lipochitooligosaccharide nodulation signals.
', select the correct biomedical concept corresponding to 'rhizobium sp. strain lpu83'. Answer using one of the provided options. | <Options>: A: rhizobium sp. 8211
B: rhizobium sp. usda 3883
C: rhizobium sp. 1003
D: rhizobium sp. r46283
E: rhizobium sp. p-26
F: None of the above. | F |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept corresponding to 'rhizobium sp. strain lpu83'. Answer using one of the provided options. | <Options>: A: rhizobium sp. s93
B: rhizobium sp. lb11
C: rhizobium sp. p-26
D: rhizobium sp. hbu08134
E: rhizobium sp. ufla4-68
F: None of the above. | F |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept corresponding to 'alfalfa'. Answer using one of the provided options. | <Options>: A: medicago marina
B: medicago hypogaea
C: medicago saxatilis
D: barrel medic (aka medicago truncatula)
E: lucerne (aka medicago sativa)
F: None of the above. | E |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept corresponding to 'leucena leucocephala'. Answer using one of the provided options. | <Options>: A: arundinicola leucocephala
B: armeria leucocephala
C: baccharis leucocephala
D: leucaena leucocephala (granadillo bobo) (aka leucaena leucocephala)
E: erosia leucocephala (aka phazaca leucocephala)
F: None of the above. | D |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept corresponding to 'alfalfa'. Answer using one of the provided options. | <Options>: A: medicago (medics) (aka medicago)
B: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
C: medicago saxatilis
D: medicago hypogaea
E: lucerne (aka medicago sativa)
F: None of the above. | E |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept corresponding to 'sinorhizobium meliloti'. Answer using one of the provided options. | <Options>: A: sinorhizobium arboris (sinorhizobium arboris nick et al. 1999) (aka sinorhizobium arboris)
B: sinorhizobium meliloti kh30a
C: sinorhizobium meliloti kh35b
D: sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (aka sinorhizobium meliloti)
E: ensifer medicae (aka sinorhizobium medicae)
F: None of the above. | D |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept corresponding to 'sinorhizobium medicae'. Answer using one of the provided options. | <Options>: A: mesorhizobium sophorae
B: sinorhizobium medicae kh36d
C: rhizobium gallicum
D: sinorhizobium medicae (sinorhizobium medicae rome et al. 1996) (aka sinorhizobium medicae)
E: sinorhizobium medicae m22
F: None of the above. | D |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept corresponding to 'rhizobium mongolense usda 1844'. Answer using one of the provided options. | <Options>: A: rhizobium indicum
B: rhizobium gallicum
C: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
D: rhizobium pongamiae
E: rhizobium tibeticum
F: None of the above. | C |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept corresponding to 'rhizobium mongolense usda 1844'. Answer using one of the provided options. | <Options>: A: rhizobium indicum
B: rhizobium terricola
C: rhizobium pongamiae
D: rhizobium zeae
E: rhizobium alvei
F: None of the above. | F |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept corresponding to 'lpu83'. Answer using one of the provided options. | <Options>: A: fungal clone uuf-68
B: bacterium lgm83
C: mammalian expression vector psa83
D: bacterium urfm83
E: urt cloning vector pkp77
F: None of the above. | F |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept corresponding to 'lpu83'. Answer using one of the provided options. | <Options>: A: plasmid pls88
B: bacterium lgm83
C: plutonaster
D: bacterium urfm83
E: llap 8 (aka legionella-like amoebal pathogen 8)
F: None of the above. | F |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept corresponding to 'r. mongolense 1844'. Answer using one of the provided options. | <Options>: A: rhizobium terricola
B: rhododendron taliense
C: rhizobium rhododendri
D: rhipicephalus rutilus
E: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
F: None of the above. | E |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept corresponding to 'rhizobium sp. strain lpu83'. Answer using one of the provided options. | <Options>: A: rhizobium sp. ls-1233
B: rhizobium sp. ml83
C: rhizobium sp. ls-079
D: rhizobium sp. usda 3883
E: rhizobium sp. an83
F: None of the above. | F |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept corresponding to 'alfalfa'. Answer using one of the provided options. | <Options>: A: alfalfa (aka medicago sativa)
B: barrel medic (aka medicago truncatula)
C: medica italica (aka medicago italica)
D: medicago murex
E: medicago arborea
F: None of the above. | A |
<Instruct>: Given the context 'Remarkably, while in strain LPU83 most of the NFs were sulfated in their reducing terminal residue, none of the NFs isolated from the nodH mutant LPU83-H were sulfated.', select the correct biomedical concept corresponding to 'lpu83'. Answer using one of the provided options. | <Options>: A: plutonaster
B: ulva picorna-like virus 3
C: fungal clone uuf-68
D: plasmid pls88
E: llap 9 (aka legionella-like amoebal pathogen 9)
F: None of the above. | F |
<Instruct>: Given the context 'Remarkably, while in strain LPU83 most of the NFs were sulfated in their reducing terminal residue, none of the NFs isolated from the nodH mutant LPU83-H were sulfated.', select the correct biomedical concept corresponding to 'lpu83-h'. Answer using one of the provided options. | <Options>: A: mammalian expression vector ppal
B: listeria phage lp-083-2
C: helianthus annus leaf-associated partitivirus 5
D: hubei partiti-like virus 43
E: hubei partiti-like virus 48
F: None of the above. | F |
<Instruct>: Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', select the correct biomedical concept corresponding to 'lpu83'. Answer using one of the provided options. | <Options>: A: yeast expression vector pjg483
B: ulva picorna-like virus 1
C: ula
D: bacterium urfm83
E: shuttle vector pmtl83151
F: None of the above. | F |
<Instruct>: Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', select the correct biomedical concept corresponding to 'alfalfa'. Answer using one of the provided options. | <Options>: A: medicago (medics) (aka medicago)
B: verticillium alfalfae
C: alfalfa (aka medicago sativa)
D: medicago arborea
E: medicago saxatilis
F: None of the above. | C |
<Instruct>: Given the context 'Plantazolicin, a novel microcin B17/streptolysin S-like natural product from Bacillus amyloliquefaciens FZB42.
', select the correct biomedical concept corresponding to 'bacillus amyloliquefaciens fzb42'. Answer using one of the provided options. | <Options>: A: bacillus amyloliquefaciens ap71
B: bacillus amyloliquefaciens hb-26
C: bacillus amyloliquefaciens ab01
D: bacillus amyloliquefaciens subsp. amyloliquefaciens (aka bacillus amyloliquefaciens)
E: bacillus amyloliquefaciens fzb42 (aka bacillus velezensis fzb42)
F: None of the above. | D |
<Instruct>: Given the context 'Plantazolicin, a novel microcin B17/streptolysin S-like natural product from Bacillus amyloliquefaciens FZB42.
', select the correct biomedical concept corresponding to 'bacillus amyloliquefaciens fzb42'. Answer using one of the provided options. | <Options>: A: bacillus amyloliquefaciens egd-aq14
B: bacillus amyloliquefaciens lfb112
C: bacillus amyloliquefaciens ap71
D: bacillus amyloliquefaciens umaf6639
E: bacillus amyloliquefaciens ucmb5140
F: None of the above. | F |
<Instruct>: Given the context 'Here we report on a novel thiazole/oxazole-modified microcin (TOMM) from Bacillus amyloliquefaciens FZB42, a Gram-positive soil bacterium.', select the correct biomedical concept corresponding to 'bacillus amyloliquefaciens fzb42'. Answer using one of the provided options. | <Options>: A: bacillus amyloliquefaciens umaf6639
B: bacillus amyloliquefaciens ap79
C: bacillus amyloliquefaciens (bacillus amyloliquefaciens subsp. amyloliquefaciens) (aka bacillus amyloliquefaciens)
D: bacillus amyloliquefaciens lfb112
E: bacillus amyloliquefaciens ebl11
F: None of the above. | C |
<Instruct>: Given the context 'Like microcin B17 and streptolysin S, the TOMM from B. amyloliquefaciens FZB42 undergoes extensive posttranslational modification to become a bioactive natural product.', select the correct biomedical concept corresponding to 'b. amyloliquefaciens fzb42'. Answer using one of the provided options. | <Options>: A: bacillus amyloliquefaciens uasws ba1
B: bacillus amyloliquefaciens lfb112
C: bacillus amyloliquefaciens umaf6639
D: bacillus amyloliquefaciens ab01
E: bacillus amyloliquefaciens subsp. amyloliquefaciens (aka bacillus amyloliquefaciens)
F: None of the above. | E |
<Instruct>: Given the context 'Mismatch repair modulation of MutY activity drives Bacillus subtilis stationary-phase mutagenesis.
', select the correct biomedical concept corresponding to 'bacillus subtilis'. Answer using one of the provided options. | <Options>: A: bacillus (aka bacillus <firmicutes>)
B: bacillus longisporus ('bacillus longisporus') (aka bacillus longisporus)
C: bacillus subtilis (bacillus subtilis/bacillus globigii) (aka bacillus subtilis)
D: bacillus (aka bacillus <walking sticks>)
E: bacillus aerius
F: None of the above. | C |
<Instruct>: Given the context 'Oxidative stress-induced DNA damage has been associated with generation of adaptive His(+) and Met(+) but not Leu(+) revertants in strain Bacillus subtilis YB955 (hisC952 metB5 leuC427).', select the correct biomedical concept corresponding to 'strain bacillus subtilis yb955 (hisc952 metb5 leuc427)'. Answer using one of the provided options. | <Options>: A: bacillus sp. 775
B: bacillus subtilis hj5
C: bacillus sp. y995
D: bacillus subtilis strain b2 (aka bacillus subtilis b2)
E: bacillus sp. 1055(2011)
F: None of the above. | F |
<Instruct>: Given the context 'Moreover, the increased rate of adaptive Leu(+) revertants produced by a MutSL knockout strain was significantly diminished following mutY disruption.', select the correct biomedical concept corresponding to 'mutsl knockout strain'. Answer using one of the provided options. | <Options>: A: kuttervirus mutine (salmonella virus mutine) (aka kuttervirus mutine)
B: mutilla inermis (aka traumatomutilla inermis)
C: mutilla mutica (aka myrmilla mutica)
D: fungal endophyte mut 585
E: mute swan feces associated toti-like virus 1
F: None of the above. | F |
<Instruct>: Given the context 'In conclusion, our results support the idea that MMR regulation of the mutagenic/antimutagenic properties of MutY promotes stationary-phase mutagenesis in B. subtilis cells.
', select the correct biomedical concept corresponding to 'b. subtilis'. Answer using one of the provided options. | <Options>: A: sowerbaea subtilis
B: bacillus mesentericus (aka bacillus pumilus)
C: bacillus (aka bacillus <walking sticks>)
D: bacillus (aka bacillus <firmicutes>)
E: vibrio subtilis (aka bacillus subtilis)
F: None of the above. | E |
<Instruct>: Given the context 'Mapping interactions between germinants and Clostridium difficile spores.
', select the correct biomedical concept corresponding to 'clostridium difficile'. Answer using one of the provided options. | <Options>: A: flavobacterium difficile
B: clostridium botulinum d
C: clostridium intestinalis (aka clostridium intestinale)
D: peptoclostridium difficile (aka clostridioides difficile)
E: clostridium difficile 824 (aka clostridioides difficile 824)
F: None of the above. | D |
<Instruct>: Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', select the correct biomedical concept corresponding to 'clostridium difficile'. Answer using one of the provided options. | <Options>: A: polytoma difficile
B: clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (aka clostridioides difficile)
C: clostridium botulinum d
D: clostridium septicum (bacillus septicus) (aka clostridium septicum)
E: exapion difficile (apion difficile) (aka exapion difficile)
F: None of the above. | B |
<Instruct>: Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: eubacterium difficile
B: clostridium difficile m68 (aka clostridioides difficile m68)
C: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
D: clostridium difficile t11 (aka clostridioides difficile t11)
E: flavobacterium difficile
F: None of the above. | C |
<Instruct>: Given the context 'Taurocholate (a bile salt) and glycine (an amino acid) have been shown to be important germinants of C. difficile spores.', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: eubacterium difficile
B: bacterium diphtheriae (aka corynebacterium diphtheriae)
C: clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (aka clostridioides difficile)
D: clostridium thermarum
E: exapion difficile (apion difficile) (aka exapion difficile)
F: None of the above. | C |
<Instruct>: Given the context 'Taurocholate (a bile salt) and glycine (an amino acid) have been shown to be important germinants of C. difficile spores.', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: clostridium difficile strain b-1 (aka clostridioides difficile b-1)
B: polytoma difficile
C: clostridium difficile t61 (aka clostridioides difficile t61)
D: bacterium diphtheriae (aka corynebacterium diphtheriae)
E: clostridium septicum (bacillus septicus) (aka clostridium septicum)
F: None of the above. | F |
<Instruct>: Given the context 'In the present study, we tested a series of glycine and taurocholate analogs for the ability to induce or inhibit C. difficile spore germination.', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: bacterium diphtheriae (aka corynebacterium diphtheriae)
B: cosmarium difficile
C: ditrichum difficile (trichostomum difficile) (aka ditrichum difficile)
D: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
E: clostridium septicum (bacillus septicus) (aka clostridium septicum)
F: None of the above. | D |
<Instruct>: Given the context 'The C. difficile germination machinery also recognizes other hydrophobic amino acids.', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: flavobacterium difficile
B: polytoma difficile
C: clostridium difficile t61 (aka clostridioides difficile t61)
D: clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (aka clostridioides difficile)
E: clostridium difficile m68 (aka clostridioides difficile m68)
F: None of the above. | D |
<Instruct>: Given the context 'In contrast, the 6- and 7-hydroxyl groups are required for inhibition of C. difficile spore germination.', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: polytoma difficile
B: flavobacterium difficile
C: clostridium difficile t61 (aka clostridioides difficile t61)
D: clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (aka clostridioides difficile)
E: apion difficile (aka exapion difficile)
F: None of the above. | D |
<Instruct>: Given the context 'Similarly, C. difficile spores are able to detect taurocholate analogs with shorter, but not longer, alkyl amino sulfonic acid side chains.', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
B: clostridium difficile m68 (aka clostridioides difficile m68)
C: polytoma difficile
D: clostridium thermarum
E: cosmarium difficile
F: None of the above. | A |
<Instruct>: Given the context 'Finally, a taurocholate analog with an m-aminobenzenesulfonic acid side chain is a strong inhibitor of C. difficile spore germination.', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: eubacterium difficile
B: peptoclostridium difficile (aka clostridioides difficile)
C: apion difficile (aka exapion difficile)
D: bacterium diphtheriae (aka corynebacterium diphtheriae)
E: clostridium difficile t61 (aka clostridioides difficile t61)
F: None of the above. | B |
<Instruct>: Given the context 'In conclusion, C. difficile spores recognize both amino acids and taurocholate through multiple interactions that are required to bind the germinants and/or activate the germination machinery.
', select the correct biomedical concept corresponding to 'c. difficile'. Answer using one of the provided options. | <Options>: A: clostridium difficile m68 (aka clostridioides difficile m68)
B: clostridium septicum (bacillus septicus) (aka clostridium septicum)
C: polytoma difficile
D: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
E: flavobacterium difficile
F: None of the above. | D |
<Instruct>: Given the context 'In vitro studies of peptidoglycan binding and hydrolysis by the Bacillus anthracis germination-specific lytic enzyme SleB.
The Bacillus anthracis endospore loses resistance properties during germination when its cortex peptidoglycan is degraded by germination-specific lytic enzymes (GSLEs).', select the correct biomedical concept corresponding to 'bacillus anthracis'. Answer using one of the provided options. | <Options>: A: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
B: bacillus cytotoxis (aka bacillus cytotoxicus)
C: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
D: anthrax
E: bacillus pestis (aka yersinia pestis)
F: None of the above. | C |
<Instruct>: Given the context 'In vitro studies of peptidoglycan binding and hydrolysis by the Bacillus anthracis germination-specific lytic enzyme SleB.
The Bacillus anthracis endospore loses resistance properties during germination when its cortex peptidoglycan is degraded by germination-specific lytic enzymes (GSLEs).', select the correct biomedical concept corresponding to 'bacillus anthracis'. Answer using one of the provided options. | <Options>: A: bacillus cereus biovar anthracis
B: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
C: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
D: bacillus pestis (aka yersinia pestis)
E: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
F: None of the above. | B |
<Instruct>: Given the context 'As the conditions and limitations for SleB activity are further elucidated, they will enable the development of treatments that stimulate premature germination of B. anthracis spores, greatly simplifying decontamination measures.
', select the correct biomedical concept corresponding to 'b. anthracis'. Answer using one of the provided options. | <Options>: A: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
B: bacillus necrophorus (aka fusobacterium necrophorum)
C: anthrax
D: anthrax (aka bacillus anthracis)
E: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
F: None of the above. | D |
<Instruct>: Given the context 'Glucose-dependent activation of Bacillus anthracis toxin gene expression and virulence requires the carbon catabolite protein CcpA.
Sensing environmental conditions is an essential aspect of bacterial physiology and virulence.', select the correct biomedical concept corresponding to 'bacillus anthracis'. Answer using one of the provided options. | <Options>: A: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
B: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
C: bacillus cereus var. anthracis (aka bacillus anthracis)
D: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
E: bacillus cereus biovar anthracis
F: None of the above. | C |
<Instruct>: Given the context 'Glucose-dependent activation of Bacillus anthracis toxin gene expression and virulence requires the carbon catabolite protein CcpA.
Sensing environmental conditions is an essential aspect of bacterial physiology and virulence.', select the correct biomedical concept corresponding to 'bacillus anthracis'. Answer using one of the provided options. | <Options>: A: pestisella pestis (aka yersinia pestis)
B: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
C: bacillus aerophilus
D: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
E: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
F: None of the above. | F |
<Instruct>: Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', select the correct biomedical concept corresponding to 'bacillus anthracis'. Answer using one of the provided options. | <Options>: A: anthrax
B: bacillus bronchicanis (aka bordetella bronchiseptica)
C: bacillus aerophilus
D: bacteridium anthracis (aka bacillus anthracis)
E: bacillus cytotoxis (aka bacillus cytotoxicus)
F: None of the above. | D |
<Instruct>: Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', select the correct biomedical concept corresponding to 'anthrax'. Answer using one of the provided options. | <Options>: A: anthrax varius
B: platypeza anthrax
C: anthribus
D: bacteridium anthracis (aka bacillus anthracis)
E: anthribus nebulosus (brachytarsus nebulosus) (aka anthribus nebulosus)
F: None of the above. | D |
<Instruct>: Given the context 'Here it is shown that glucose is an additional signaling molecule recognized by B. anthracis for toxin synthesis.', select the correct biomedical concept corresponding to 'b. anthracis'. Answer using one of the provided options. | <Options>: A: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
B: pestisella pestis (aka yersinia pestis)
C: bacillus bronchicanis (aka bordetella bronchiseptica)
D: bacteridium anthracis (aka bacillus anthracis)
E: anthrax
F: None of the above. | D |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept corresponding to 'b. anthracis strain'. Answer using one of the provided options. | <Options>: A: bacillus pestis (aka yersinia pestis)
B: bacillus anthracis str. sterne (bacillus anthracis (strain sterne)) (aka bacillus anthracis str. sterne)
C: bacillus anthracis a16 (aka bacillus anthracis str. a16)
D: bacillus anthracis bf1 (aka bacillus anthracis str. bf1)
E: bacillus cereus var. anthracis (aka bacillus anthracis)
F: None of the above. | E |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept corresponding to 'mouse'. Answer using one of the provided options. | <Options>: A: western wild mouse (aka mus spretus)
B: mus musculus (house mouse) (aka mus musculus)
C: southeastern asian house mouse (aka mus musculus castaneus)
D: western european house mouse (aka mus musculus domesticus)
E: mice (aka mus <genus>) (aka mus <genus>)
F: None of the above. | B |
<Instruct>: Given the context 'The data demonstrated that glucose is an important host environment-derived signaling molecule and that CcpA is a molecular link between environmental sensing and B. anthracis pathogenesis.
', select the correct biomedical concept corresponding to 'b. anthracis'. Answer using one of the provided options. | <Options>: A: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
B: pestisella pestis (aka yersinia pestis)
C: bacillus necrophorus (aka fusobacterium necrophorum)
D: bacteridium anthracis (aka bacillus anthracis)
E: bacillus bronchisepticus (aka bordetella bronchiseptica)
F: None of the above. | D |
<Instruct>: Given the context 'Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96.
Pseudomonas fluorescens Q8r1-96 represents a group of rhizosphere strains responsible for the suppressiveness of agricultural soils to take-all disease of wheat.', select the correct biomedical concept corresponding to 'pseudomonas fluorescens q8r1-96'. Answer using one of the provided options. | <Options>: A: pseudomonas fluorescens bv. i
B: bacillus fluorescens (aka pseudomonas fluorescens)
C: pseudomonas fluorescens nbrc 14160
D: pseudomonas floridae (aka pseudomonas floridensis)
E: pseudomonas fluorescens bv. iii
F: None of the above. | B |
<Instruct>: Given the context 'Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96.
Pseudomonas fluorescens Q8r1-96 represents a group of rhizosphere strains responsible for the suppressiveness of agricultural soils to take-all disease of wheat.', select the correct biomedical concept corresponding to 'pseudomonas fluorescens q8r1-96'. Answer using one of the provided options. | <Options>: A: pseudomonas fluorescens bv. iii
B: bacterium fluorescen (aka pseudomonas fluorescens)
C: pseudomonas fluorescens bv. f
D: pseudomonas fluorescens ncimb 11764
E: pseudomonas fluorescens bv. v
F: None of the above. | B |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept corresponding to 'q8r1-96'. Answer using one of the provided options. | <Options>: A: cloning vector ia1_gkr
B: cloning vector ia(10)_hqn
C: cloning vector ia(5)_hqn_fa(2)_ksl
D: cloning vector ia1_yqr_dimer
E: halobacteriales archaeon qh_1_68_42
F: None of the above. | F |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept corresponding to 'pseudomonas syringae'. Answer using one of the provided options. | <Options>: A: pseudomonas syringae icmp 19499
B: pseudomonas brassicacearum
C: pseudomonas syringae tomato (aka pseudomonas syringae pv. tomato)
D: pseudomonas syringae subsp. syringae (aka pseudomonas syringae)
E: pseudomonas brassicae
F: None of the above. | D |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept corresponding to 'pseudomonas syringae'. Answer using one of the provided options. | <Options>: A: pseudomonas syringae icmp 18806
B: phytophthora syringae (phloeophthora syringae) (aka phytophthora syringae)
C: pseudomonas brassicae
D: pseudomonas syringae icmp 11293
E: pseudomonas rhizosphaerae
F: None of the above. | F |
<Instruct>: Given the context 'We also screened a collection of 30 closely related P. fluorescens strains and detected the T3SS genes in all but one of them.', select the correct biomedical concept corresponding to 'p. fluorescens strains'. Answer using one of the provided options. | <Options>: A: pseudomonas graminis
B: pseudomonas fluorescens ncimb 11764
C: pseudomonas fluorescens group sp.
D: bacterium pf
E: bacterium fluorescen (aka pseudomonas fluorescens)
F: None of the above. | E |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', select the correct biomedical concept corresponding to 'q8r1-96'. Answer using one of the provided options. | <Options>: A: cloning vector ra(2)_hqn
B: cloning vector ia1_htk
C: cloning vector ia(9)_hqn_ra(1)_hqn
D: qwaqwaiini
E: cloning vector ia(11)_yqr
F: None of the above. | F |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', select the correct biomedical concept corresponding to 'p. syringae'. Answer using one of the provided options. | <Options>: A: pseudomonas syringae icmp 19498
B: pseudomonas syringae lmc.p80
C: bacillus pyocyaneus (aka pseudomonas aeruginosa)
D: pseudomonas syringae (pseudomonas syringae subsp. syringae) (aka pseudomonas syringae)
E: pseudomonas syringae icmp 19499
F: None of the above. | D |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', select the correct biomedical concept corresponding to 'p. syringae'. Answer using one of the provided options. | <Options>: A: pseudomonas syringae subsp. syringae (aka pseudomonas syringae)
B: pseudomonas syringae lmc.p80
C: bacillus pyocyaneus (aka pseudomonas aeruginosa)
D: pseudomonas syringae icmp 19499
E: phloeophthora syringae (aka phytophthora syringae)
F: None of the above. | A |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', select the correct biomedical concept corresponding to 'q8r1-96'. Answer using one of the provided options. | <Options>: A: cloning vector ia1_hqn
B: cloning vector ia(11)_hqn
C: cloning vector ia1_gkr
D: cloning vector ia1_htk
E: cloning vector ia1_yqr
F: None of the above. | F |
<Instruct>: Given the context 'The Q8r1-96 T3SS was expressed in the rhizosphere, but mutants lacking a functional T3SS were not altered in their rhizosphere competence.', select the correct biomedical concept corresponding to 'q8r1-96'. Answer using one of the provided options. | <Options>: A: cloning vector ia(5)_hqn_ra(1)_hqn
B: qwaqwaiini
C: cloning vector ia1_nar
D: cloning vector ra(1)_hqn
E: cloning vector ia1_hqn
F: None of the above. | F |
<Instruct>: Given the context 'The Q8r1-96 type III effectors RopAA, RopB, and RopM were capable of suppressing the hypersensitive response and production of reactive oxygen species, two plant immune responses.
', select the correct biomedical concept corresponding to 'q8r1-96'. Answer using one of the provided options. | <Options>: A: cloning vector ra(2)_hqn
B: halobacteriales archaeon qh_8_68_33
C: cloning vector ia(10)_hqn
D: cloning vector ia(5)_hqn_fa(2)_ksl
E: cloning vector ia5_yqr_dimer
F: None of the above. | F |
<Instruct>: Given the context 'A cis-encoded antisense small RNA regulated by the HP0165-HP0166 two-component system controls expression of ureB in Helicobacter pylori.
', select the correct biomedical concept corresponding to 'helicobacter pylori'. Answer using one of the provided options. | <Options>: A: helicobacter hepaticus
B: campylobacter pyloridis (aka helicobacter pylori)
C: helicobacter
D: helicobacter equorum
E: helicobacter bilis
F: None of the above. | B |
<Instruct>: Given the context 'Expression of urease is essential for gastric colonization by Helicobacter pylori.', select the correct biomedical concept corresponding to 'helicobacter pylori'. Answer using one of the provided options. | <Options>: A: helicobacter bilis
B: helicobacter muridarum
C: helicobacter
D: helicobacter cholecystus
E: helicobacter nemestrinae (aka helicobacter pylori)
F: None of the above. | E |
<Instruct>: Given the context 'C-terminal domain residues important for secretion and attachment of RgpB in Porphyromonas gingivalis.
Porphyromonas gingivalis, a periodontal pathogen, expresses a group of surface proteins with a common C-terminal domain (CTD) that are exported by a novel secretion system to the surface, where they are covalently attached.', select the correct biomedical concept corresponding to 'porphyromonas gingivalis'. Answer using one of the provided options. | <Options>: A: porphyromonas gingivalis sjd11
B: porphyromonas pasteri
C: porphyromonas gingivicanis
D: bacteroides gingivalis (aka porphyromonas gingivalis)
E: porphyromonas cangingivalis
F: None of the above. | D |
<Instruct>: Given the context 'C-terminal domain residues important for secretion and attachment of RgpB in Porphyromonas gingivalis.
Porphyromonas gingivalis, a periodontal pathogen, expresses a group of surface proteins with a common C-terminal domain (CTD) that are exported by a novel secretion system to the surface, where they are covalently attached.', select the correct biomedical concept corresponding to 'porphyromonas gingivalis'. Answer using one of the provided options. | <Options>: A: porphyromonas gingivalis ajw4
B: porphyromonas cangingivalis
C: porphyromonas gingivalis sjd11
D: porphyromonas gingivicanis
E: porphyromonas gingivalis a7a1-28
F: None of the above. | F |
<Instruct>: Given the context 'C-terminal domain residues important for secretion and attachment of RgpB in Porphyromonas gingivalis.
Porphyromonas gingivalis, a periodontal pathogen, expresses a group of surface proteins with a common C-terminal domain (CTD) that are exported by a novel secretion system to the surface, where they are covalently attached.', select the correct biomedical concept corresponding to 'porphyromonas gingivalis'. Answer using one of the provided options. | <Options>: A: porphyromonas gingivalis 381
B: porphyromonas gingivalis a7a1-28
C: porphyromonas gingivalis (bacteroides gingivalis) (aka porphyromonas gingivalis)
D: capnocytophaga gingivalis
E: porphyromonas
F: None of the above. | C |
<Instruct>: Given the context 'The mutant RgpB proteins were expressed in a P. gingivalis host lacking functional RgpB and RgpA Arg-specific proteases.', select the correct biomedical concept corresponding to 'p. gingivalis'. Answer using one of the provided options. | <Options>: A: porphyromonas gingivalis f0569
B: bacteroides gingivalis (aka porphyromonas gingivalis)
C: pasteuria
D: pasteurella gallicida (aka pasteurella multocida)
E: porphyromonas vaginalis
F: None of the above. | B |
<Instruct>: Given the context 'Effects of deficiency and overdose of group 2 sigma factors in triple inactivation strains of Synechocystis sp. strain PCC 6803.
', select the correct biomedical concept corresponding to 'synechocystis sp. strain pcc 6803'. Answer using one of the provided options. | <Options>: A: synechocystis sp. pcc 6803 (synechocystis sp. (strain pcc 6803)) (aka synechocystis sp. pcc 6803)
B: synechocystis sp. (atcc 27170) (aka synechocystis sp. pcc 6701)
C: synechococcus sp. ps673
D: synechocystis sp. atcc 27186 (aka synechocystis sp. pcc 6805)
E: synechocystis sp. pcc 7339
F: None of the above. | A |
<Instruct>: Given the context 'The cyanobacterium Synechocystis sp. strain PCC 6803 encodes nine sigma factors, all belonging to the sigma(70) family.', select the correct biomedical concept corresponding to 'synechocystis sp. strain pcc 6803'. Answer using one of the provided options. | <Options>: A: synechococcus sp. ps681
B: synechocystis sp. pcc 6702 (synechocystis sp. atcc 27171) (aka synechocystis sp. pcc 6702)
C: synechocystis sp. atcc 27186 (aka synechocystis sp. pcc 6805)
D: synechocystis sp. pcc 7339
E: synechocystis sp. atcc 27184 (aka synechocystis sp. pcc 6803)
F: None of the above. | E |
<Instruct>: Given the context 'We found that, similar to kinetoplastid aldolases, the fructose 1,6-bisphosphate aldolase of Diplonema papillatum possesses a type 2-peroxisomal targeting signal.', select the correct biomedical concept corresponding to 'diplonema papillatum'. Answer using one of the provided options. | <Options>: A: enerthenema papillatum
B: phragmidium papillatum
C: didymodon papillatus (aka triquetrella papillata)
D: gymnomitrion papillosum
E: discotricha papillifera
F: None of the above. | F |
<Instruct>: Given the context 'In contrast, orotidine-5'-monophosphate decarboxylase, a non-glycolytic glycosomal enzyme in kinetoplastids, was shown to be a cytosolic enzyme in D. papillatum.', select the correct biomedical concept corresponding to 'd. papillatum'. Answer using one of the provided options. | <Options>: A: daphnia prolata
B: fusarium papillatum (neocosmospora papillata) (aka fusarium papillatum)
C: diaphorodoris papillata
D: seiridium papillatum
E: phragmidium papillatum
F: None of the above. | F |
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