LiteFold/InterPro · Datasets at Hugging Face

IPR059552

59,552

YKP1, C-terminal domain

YKP1_C

Domain

860

false

This entry represents the C-terminal domain of YKP1, an uncharacterised protein encoded by the killer plasmid pGKL2 from Kluyveromyces lactis. The presence of plasmids pGKL1 and pGKL2 confers the killer phenotype to the host cell by promoting secretion of a toxin that inhibits growth of sensitive strains [ ]. This prot...

[]

0

[ "PFAM" ]

[ "PF28449" ]

[ "YKP1_C" ]

[ 860 ]

1

[]

0

[]

0

[ "PUB00045923" ]

[ "3041369" ]

[ "Genome organization of the killer plasmid pGK12 from Kluyveromyces lactis." ]

[ 1988 ]

1

[]

0

null

[ "Eukaryota" ]

[ 860 ]

1

[ "Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)" ]

[ 2 ]

1

true

Domain

YKP1, C-terminal domain

YKP1_C

3

IPR059553

59,553

Gramillins biosynthetic cluster protein GRA5

GRA5

Family

797

false

This entry represents the GRA5 protein family, found in fungal gramillins biosynthetic gene clusters. The gramillins biosynthetic cluster mediates the production of gramillins A and B, which are bicyclic lipopeptides that induce cell death in maize leaves but not in wheat leaves [ ]. This biosynthetic pathway involves ...

[]

0

[ "PFAM" ]

[ "PF28504" ]

[ "GRA5" ]

[ 797 ]

1

[]

0

[]

0

[ "PUB00094557" ]

[ "30395461" ]

[ "Gramillin A and B: Cyclic Lipopeptides Identified as the Nonribosomal Biosynthetic Products of Fusarium graminearum." ]

[ 2018 ]

1

[]

0

null

[ "Eukaryota" ]

[ 797 ]

1

[]

0

true

Family

Gramillins biosynthetic cluster protein GRA5

GRA5

1

IPR059554

59,554

YfhS

Family

726

false

This entry represents a family of uncharacterised proteins found in bacillales, including YfhS from Bacillus subtilis. YfhS is expressed in the mother cell during sporulation and its expression is sigma E-dependent [ ]. The protein is located near the sspE locus, which encodes a small acid-soluble spore protein. Howeve...

[]

0

[ "PFAM" ]

[ "PF27145" ]

[ "YfhS" ]

[ 726 ]

1

[]

0

[]

0

[ "PUB00162417" ]

[ "10463184" ]

[ "Transcription of genes near the sspE locus of the Bacillus subtilis genome." ]

[ 1999 ]

1

[]

0

null

[ "Bacillales" ]

[ 726 ]

1

[]

0

true

Family

YfhS

6

IPR059556

59,556

HI_1622-like, C-terminal domain

HI_1622-like_C

Domain

727

false

This entry represents a C-terminal domain found in HI_1622 proteins from Haemophilus and related bacteria. HI_1622 is an uncharacterised membrane protein of 161 amino acids (17.5 kDa) that is synthesised as a precursor with an N-terminal signal peptide and a single C-terminal transmembrane helix. The mature protein loc...

[]

0

[ "PFAM" ]

[ "PF27549" ]

[ "HI_1622_C" ]

[ 727 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Cladocopium goreaui", "Methanosarcinaceae", "metagenomes" ]

[ 695, 1, 11, 20 ]

4

[]

0

true

Domain

HI_1622-like, C-terminal domain

HI_1622-like_C

8

IPR059558

59,558

RNA polymerase II elongation factor ell1, C-terminal domain

ELL1_C

Domain

727

false

This entry represents the C-terminal domain of ELL1 (RNA polymerase II elongation factor ell1) and similar proteins found in ascomicetes. ELL1 belongs to the ELL/occludin family and activates transcription elongation by RNA polymerase II. The protein forms a stable heterodimer with eaf1, and this ell1-eaf1 complex inte...

[]

0

[ "PFAM" ]

[ "PF28522" ]

[ "ELL1_C" ]

[ 727 ]

1

[]

0

[]

0

[ "PUB00044244" ]

[ "17150956" ]

[ "Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL." ]

[ 2007 ]

1

[]

0

null

[ "Opisthokonta" ]

[ 727 ]

1

[ "Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)", "Schizosaccharomyces pombe (strain 972 / ATCC 24843)" ]

[ 1, 1 ]

2

true

Domain

RNA polymerase II elongation factor ell1, C-terminal domain

ELL1_C

2

IPR059559

59,559

Sigma-w pathway protein YsdB, C-terminal domain

YsdB_C

Domain

676

false

This entry represents the globular domain located at the C-terminal end of YsdB, a sigma-W pathway protein from Bacillus subtilis. YsdB may mediate a negative feedback loop that down-regulates expression of the sigma-W regulon following activation of sigma-W in response to cell envelope stress [ ]. The protein might in...

[]

0

[ "PFAM" ]

[ "PF27140" ]

[ "YsdB" ]

[ 676 ]

1

[]

0

[]

0

[ "PUB00054608", "PUB00162426" ]

[ "16816000", "12207695" ]

[ "Evidence for a novel protease governing regulated intramembrane proteolysis and resistance to antimicrobial peptides in Bacillus subtilis.", "Antibiotics that inhibit cell wall biosynthesis induce expression of the Bacillus subtilis sigma(W) and sigma(M) regulons." ]

[ 2006, 2002 ]

2

[]

0

null

[ "Bacilli" ]

[ 676 ]

1

[]

0

true

Domain

Sigma-w pathway protein YsdB, C-terminal domain

YsdB_C

8

IPR059560

59,560

YGL2, N-terminal alpha-helical domain

YGL2_N

Domain

675

false

This entry represents the N-terminal α-helical domain of YGL2, an uncharacterised protein from Streptomyces viridochromogenes. The protein is located in the glnII region, which contains a gene encoding a eukaryotic-like glutamine synthetase that confers resistance to the antibiotic phosphinothricyl-alanyl-alanine [ ]. ...

[]

0

[ "PFAM" ]

[ "PF27147" ]

[ "YGL2_N" ]

[ 675 ]

1

[]

0

[]

0

[ "PUB00151418" ]

[ "1975583" ]

[ "Overexpression of a Streptomyces viridochromogenes gene (glnII) encoding a glutamine synthetase similar to those of eucaryotes confers resistance against the antibiotic phosphinothricyl-alanyl-alanine." ]

[ 1990 ]

1

[]

0

null

[ "Actinomycetes" ]

[ 675 ]

1

[]

0

true

Domain

YGL2, N-terminal alpha-helical domain

YGL2_N

3

IPR059561

59,561

PglY, fourth domain

PglY_4th

Domain

646

false

This entry represents the fourth domain of PglY, an ATPase component of the BREX (bacteriophage exclusion) type 2 system from Streptomyces coelicolor [ , ]. PglY is part of a four-gene system (pglW-pglX-pglY-pglZ) that provides immunity against bacteriophages such as phiC31 and phiBT1 [ ]. PglY exhibits ATPase activity...

[]

0

[ "PFAM" ]

[ "PF27141" ]

[ "PglY_4th" ]

[ 646 ]

1

[]

0

[]

0

[ "PUB00093365", "PUB00105105" ]

[ "25452498", "25592393" ]

[ "BREX is a novel phage resistance system widespread in microbial genomes.", "The phage growth limitation system in Streptomyces coelicolor A(3)2 is a toxin/antitoxin system, comprising enzymes with DNA methyltransferase, protein kinase and ATPase activity." ]

[ 2015, 2015 ]

2

[]

0

null

[ "Bacteria", "Halosolutus amylolyticus", "unclassified sequences" ]

[ 636, 1, 9 ]

3

[]

0

true

Domain

PglY, fourth domain

PglY_4th

5

IPR059562

59,562

TnsB, N-terminal SH3-like domain

TnsB_N

Domain

649

false

This entry represents the N-terminal domain of TnsB, a DNA- binding component of the Tn7 transposase complex. This domain adopts an SH3-like barrel fold and forms part of the first DNA-binding domain (DBD1) that recognises sequences at both ends of the Tn7 transposon [ ]. The domain is essential for DNA binding and tra...

[]

0

[ "PFAM" ]

[ "PF27165" ]

[ "TnsB_N" ]

[ 649 ]

1

[]

0

[ "7pik" ]

1

[ "PUB00162042" ]

[ "35654042" ]

[ "Structural basis of transposon end recognition explains central features of Tn7 transposition systems." ]

[ 2022 ]

1

[]

0

null

[ "Bacteria", "ecological metagenomes" ]

[ 646, 3 ]

2

[]

0

true

Domain

TnsB, N-terminal SH3-like domain

TnsB_N

9

IPR059565

59,565

YobF, C-terminal domain

YobF_C

Domain

582

false

This entry represents the C-terminal domain of YobF, an uncharacterised protein from Bacillus subtilis. The N-terminal domain of YobF shows structural similarity to cysteine proteinases, while the specific biological function of the full-length protein remains unknown. The role of this C-terminal domain within the YobF...

[]

0

[ "PFAM" ]

[ "PF27157" ]

[ "YobF_C" ]

[ 582 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "ecological metagenomes", "leotiomyceta" ]

[ 510, 2, 70 ]

3

[]

0

true

Domain

YobF, C-terminal domain

YobF_C

1

IPR059566

59,566

YNQ4, C-terminal domain

YNQ4_C

Domain

552

false

This entry represents a domain of unknown function found at the C terminus of an uncharacterised protein from Paracoccus denitrificans. The full-length protein is encoded within the gene cluster for the energy-transducing NADH-quinone oxidoreductase, suggesting a potential role in respiratory electron transport [ ]. Th...

[]

0

[ "PFAM" ]

[ "PF27137" ]

[ "YNQ4_C" ]

[ 552 ]

1

[]

0

[]

0

[ "PUB00162423" ]

[ "8422400" ]

[ "DNA sequencing of the seven remaining structural genes of the gene cluster encoding the energy-transducing NADH-quinone oxidoreductase of Paracoccus denitrificans." ]

[ 1993 ]

1

[]

0

null

[ "Rhodobacterales", "ecological metagenomes" ]

[ 547, 5 ]

2

[]

0

true

Domain

YNQ4, C-terminal domain

YNQ4_C

1

IPR059567

59,567

YdfE, N-terminal domain

YdfE_N

Domain

676

false

This entry represents the N-terminal domain of YdfE proteins found primarily in enterobacterales. YdfE is a protein of approximately 306 amino acids that is classified in the COG0847 group. YdfE may be a pseudogene product in some strains due to IS2 element insertion [ ]. The function of this domain remains to be deter...

[]

0

[ "PFAM" ]

[ "PF27430" ]

[ "YdfE_N" ]

[ 676 ]

1

[]

0

[]

0

[ "PUB00162413" ]

[ "2477663" ]

[ "Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA." ]

[ 1989 ]

1

[]

0

null

[ "Bacteria", "Bracon brevicornis" ]

[ 675, 1 ]

2

[ "Escherichia coli (strain K12)" ]

[ 1 ]

1

true

Domain

YdfE, N-terminal domain

YdfE_N

2

IPR059568

59,568

YozF-like

Family

538

false

This entry represents a family of uncharacterised bacterial proteins with predicted signal peptides, including YozF from Bacillus subtilis. YozF is a 165 amino acid protein containing an N-terminal signal peptide, suggesting it is secreted or localised to the cell envelope. The mature protein after signal peptide cleav...

[]

0

[ "PFAM" ]

[ "PF27090" ]

[ "YozF" ]

[ 538 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillales" ]

[ 538 ]

1

[]

0

true

Family

YozF-like

3

IPR059569

59,569

Y4jL, N-terminal domain

Y4jL_N

Domain

536

false

This entry represents the N-terminal domain of Y4jL, an uncharacterised protein from Sinorhizobium fredii. The protein is encoded on the symbiotic plasmid pNGR234a. The specific function of this domain remains unknown. This domain can also be found at the C-terminal in putative Plasmid pRiA4b Orf3-like domain-containin...

[]

0

[ "PFAM" ]

[ "PF27146" ]

[ "Y4jL_N" ]

[ 536 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "ecological metagenomes" ]

[ 530, 6 ]

2

[]

0

true

Domain

Y4jL, N-terminal domain

Y4jL_N

7

IPR059570

59,570

HI_1489-like, N-terminal domain

HI_1489-like_N

Domain

530

false

This entry represents the N-terminal domain of HI_1489, an uncharacterised protein of 184 amino acids found in Haemophilus influenzae. HI_1489 is a two-domain protein whose function remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27180" ]

[ "HI_1489_N" ]

[ 530 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Caudoviricetes", "metagenomes" ]

[ 506, 19, 5 ]

3

[]

0

true

Domain

HI_1489-like, N-terminal domain

HI_1489-like_N

9

IPR059571

59,571

Phage T4 terminal DNA protecting protein

Phage_T4_gp2

Family

531

false

This entry represents the terminal DNA protecting protein found in bacteriophages, including the member from bacteriophage T4, a 274 amino acid protein with a molecular weight of 31.6 kDa. The protein is also known as gene product 64 (gp64) or head protein Gp2. It functions to bind viral DNA ends and protect the viral ...

[]

0

[ "PFAM" ]

[ "PF26869" ]

[ "Phage_T4_gp2" ]

[ 531 ]

1

[]

0

[]

0

[ "PUB00162242" ]

[ "10633100" ]

[ "Bacteriophage T4 self-assembly: in vitro reconstitution of recombinant gp2 into infectious phage." ]

[ 2000 ]

1

[]

0

null

[ "Archaea", "Pseudomonadati", "Viruses", "metagenomes" ]

[ 2, 2, 494, 33 ]

4

[]

0

true

Family

Phage T4 terminal DNA protecting protein

Phage_T4_gp2

1

IPR059572

59,572

MSMEG_6518-like, N-terminal domain

MSMEG_6518-like_N

Domain

524

false

This entry represents the N-terminal domain of MSMEG_6518, an uncharacterised protein of 129 amino acids found in Mycolicibacterium smegmatis. The protein contains an N-terminal domain followed by a C-terminal HTH domain. MSMEG_6518 binds 2-aminothiazole antibiotics, which are antitubercular agents [ ]. The protein is ...

[]

0

[ "PFAM" ]

[ "PF27182" ]

[ "MSMEG_6518_N" ]

[ 524 ]

1

[]

0

[]

0

[ "PUB00162171" ]

[ "30416491" ]

[ "Identification of Enolase as the Target of 2-Aminothiazoles in Mycobacterium tuberculosis." ]

[ 2018 ]

1

[]

0

null

[ "Bacteria" ]

[ 524 ]

1

[]

0

true

Domain

MSMEG_6518-like, N-terminal domain

MSMEG_6518-like_N

1

IPR059573

59,573

YdeJ domain

YdeJ_dom

Domain

524

false

This entry represents the central domain found in the YdeJ lipoprotein from firmicutes. YdeJ is an uncharacterised lipoprotein of approximately 219 amino acids that is anchored to the cell membrane via lipid modification. The protein contains a signal peptide for secretion and undergoes N-palmitoyl and S-diacylglycerol...

[]

0

[ "PFAM" ]

[ "PF27223" ]

[ "YdeJ" ]

[ 524 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "metagenomes" ]

[ 522, 2 ]

2

[]

0

true

Domain

YdeJ domain

YdeJ_dom

8

IPR059574

59,574

Bacteriophage T4 endonuclease IV

Phage_T4_End_IV

Family

491

false

This entry represents endonuclease IV found in T4-like bacteriophages. This enzyme cleaves single-stranded DNA in a deoxycytidine-specific manner, with cleavage occurring exclusively at the 5'-proximal position within a deoxycytidine tract having a minimal size of 6 bases [ , ]. These specific cleavages may have a detr...

[]

0

[ "PFAM" ]

[ "PF26887" ]

[ "Phage_T4_End_IV" ]

[ 491 ]

1

[]

0

[]

0

[ "PUB00162240", "PUB00162241" ]

[ "16971463", "17940096" ]

[ "Biochemical analysis of the substrate specificity and sequence preference of endonuclease IV from bacteriophage T4, a dC-specific endonuclease implicated in restriction of dC-substituted T4 DNA synthesis.", "A hexanucleotide sequence (dC1-dC6 tract) restricts the dC-specific cleavage of single-stranded DNA by en...

[ 2006, 2007 ]

2

[]

0

null

[ "Bacteria", "Viruses", "ecological metagenomes" ]

[ 229, 257, 5 ]

3

[]

0

true

Family

Bacteriophage T4 endonuclease IV

Phage_T4_End_IV

2

IPR059575

59,575

YodN, N-terminal domain

YodN_N

Domain

444

false

This entry represents the N-terminal domain of YodN (gene BSU19670) from Bacillus subtilis, which is required for efficient spore germination in response to both L-alanine and a mixture of L-asparagine, D-glucose, D-fructose and potassium ions (AGFK) [ ]. The specific function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27191" ]

[ "YodN_N" ]

[ 444 ]

1

[]

0

[]

0

[ "PUB00163275" ]

[ "39530705" ]

[ "Identification and characterization of the Bacillus subtilis spore germination protein GerY." ]

[ 2024 ]

1

[]

0

null

[ "Bacillales" ]

[ 444 ]

1

[]

0

true

Domain

YodN, N-terminal domain

YodN_N

9

IPR059576

59,576

Phage replication gene B

Phage_RepB

Family

440

false

The Replication gene B protein family is essential for the synthesis of the lagging strand during DNA replication. It is suggested that proteins in this family may interact with the host dnaB protein, which is a helicase involved in unwinding DNA strands, facilitating the replication process. Members are found in taile...

[]

0

[ "PFAM" ]

[ "PF26815" ]

[ "Phage_RepB" ]

[ 440 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes", "Pseudomonadota" ]

[ 34, 406 ]

2

[]

0

true

Family

Phage replication gene B

Phage_RepB

9

IPR059577

59,577

MJ0711-like, N-terminal domain

MJ0711-like_N

Domain

394

false

This entry represents the N-terminal domain of the archaeal uncharacterised protein MJ0711 and similar bacterial sequences. This protein is 322 amino acids with a molecular weight of approximately 38.6 kDa and contains a single transmembrane helix at the C terminus. This N-terminal domain comprises the cytoplasmic regi...

[]

0

[ "PFAM" ]

[ "PF27233" ]

[ "MJ0711_N" ]

[ 394 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "Bacteria", "Sphagnum jensenii", "ecological metagenomes" ]

[ 45, 342, 1, 6 ]

4

[]

0

true

Domain

MJ0711-like, N-terminal domain

MJ0711-like_N

2

IPR059578

59,578

Bacteriophage T4 Y16F

Phage_T4_Y16F

Family

389

false

This entry represents the bacteriophage T4 Y16F protein family. Y16F is an uncharacterised 110-amino-acid protein with a predicted molecular weight of 12.8 kDa. The protein is encoded in the intergenic region between the arn and motA genes in the T4 genome, in the same genomic region as the related protein Y16C.

[]

0

[ "PFAM" ]

[ "PF26821" ]

[ "Phage_T4_Y16F" ]

[ 389 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Flagellimonas marina", "Viruses" ]

[ 1, 388 ]

2

[]

0

true

Family

Bacteriophage T4 Y16F

Phage_T4_Y16F

1

IPR059579

59,579

YdfE, C-terminal helical domain

YdfE_C

Domain

507

false

This entry represents the C-terminal domain of YdfE proteins found primarily in enterobacterales. This domain adopts a helical structure. YdfE is a protein of approximately 306 amino acids that is classified in the COG0847 group. It may be truncated by IS2 element insertion after residue 255 in some strains [ ]. The fu...

[]

0

[ "PFAM" ]

[ "PF27432" ]

[ "YdfE_C" ]

[ 507 ]

1

[]

0

[]

0

[ "PUB00162413" ]

[ "2477663" ]

[ "Genetic evidence that DicF, a second division inhibitor encoded by the Escherichia coli dicB operon, is probably RNA." ]

[ 1989 ]

1

[]

0

null

[ "Neoptera", "Pseudomonadati" ]

[ 2, 505 ]

2

[ "Escherichia coli (strain K12)" ]

[ 1 ]

1

true

Domain

YdfE, C-terminal helical domain

YdfE_C

5

IPR059581

59,581

YeeD

Family

354

false

This entry represents the YeeD protein, an uncharacterised protein of 101 amino acids found in Bacillus subtilis. The protein forms a four helical bundle domain that comprises the entire protein. YeeD is encoded by the gene yeeD (locus tag BSU06790) on the B. subtilis chromosome. The function of this protein remains to...

[]

0

[ "PFAM" ]

[ "PF27174" ]

[ "YeeD" ]

[ 354 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria" ]

[ 354 ]

1

[]

0

true

Family

YeeD

5

IPR059582

59,582

YoyC

Family

354

false

This entry represents YoyC, an uncharacterised protein from Bacillus subtilis (gene BSU19479), and similar sequences from bacillales. The protein has a synonym yojE. The function of this protein family remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27196" ]

[ "YoyC" ]

[ 354 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacilli" ]

[ 354 ]

1

[]

0

true

Family

YoyC

6

IPR059583

59,583

YizD

Family

348

false

This entry represents the small uncharacterised membrane protein YizD, a 55 amino acids sequence found in Bacillus subtilis, and similar proteins from bacillales. The protein is predicted to be a multi-pass membrane protein with two transmembrane helices spanning residues 5-25 and 26-46. YizD is encoded by the gene yiz...

[]

0

[ "PFAM" ]

[ "PF27185" ]

[ "YizD" ]

[ 348 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillales" ]

[ 348 ]

1

[]

0

true

Family

YizD

1

IPR059584

59,584

Baseplate hub assembly protein Gp51, C-terminal domain

Gp51_C

Domain

337

false

This entry represents the C-terminal domain found in Gp51 and related T4 phage proteins [ ]. The Baseplate Hub Assembly Protein family consists of chaperones that play a crucial role in the assembly of the baseplate's central hub during bacteriophage tail formation. These proteins are essential for the proper construct...

[]

0

[ "PFAM" ]

[ "PF28602" ]

[ "Gp51_C" ]

[ 337 ]

1

[]

0

[]

0

[ "PUB00056192", "PUB00161742" ]

[ "2763463", "34826709" ]

[ "Bacteriophage T4 late gene expression: overlapping promoters direct divergent transcription of the base plate gene cluster.", "Identification of the tail assembly chaperone genes of T4-Like phages suggests a mechanism other than translational frameshifting for biogenesis of their encoded proteins." ]

[ 1989, 2022 ]

2

[]

0

null

[ "Flagellimonas marina", "Marine Group III euryarchaeote", "Viruses", "marine metagenome" ]

[ 1, 1, 326, 9 ]

4

[]

0

true

Domain

Baseplate hub assembly protein Gp51, C-terminal domain

Gp51_C

2

IPR059585

59,585

Kil

Family

330

false

The Kil protein family is involved in inducing significant morphological changes in host cells, leading to cell enlargement and a predominantly spherical shape. These alterations may result in cell death. The mechanism of action might involve interaction, either directly or indirectly, with the host's actin-like protei...

[]

0

[ "PFAM" ]

[ "PF26843" ]

[ "Kil_protein" ]

[ 330 ]

1

[]

0

[]

0

[ "PUB00162115", "PUB00162116" ]

[ "6234699", "6237246" ]

[ "Multiple factors and processes involved in host cell killing by bacteriophage Mu: characterization and mapping.", "Hek: an Escherichia coli function involved in functional expression of the kil gene of bacteriophage Mu." ]

[ 1984, 1984 ]

2

[]

0

null

[ "Bacteria", "Caudoviricetes", "viral metagenome" ]

[ 325, 4, 1 ]

3

[]

0

true

Family

Kil

4

IPR059586

59,586

Uncharacterized protein rrnAC1427, C-terminal domain

RrnAC1427_C

Domain

323

false

This entry represents the C-terminal domain of the uncharacterized protein rrnAC1427 found in archaea. The full-length protein is 369 amino acids with a molecular weight of approximately 37.7 kDa. This domain shows structural similarity to the C-Ala domain found in alanyl-tRNA synthetases, which forms an ancient single...

[]

0

[ "PFAM" ]

[ "PF27238" ]

[ "rrnAC1427_C" ]

[ 323 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Halobacteriales" ]

[ 323 ]

1

[]

0

true

Domain

Uncharacterized protein rrnAC1427, C-terminal domain

RrnAC1427_C

5

IPR059587

59,587

ESX-1 associated protein

ESX1-assoc

Family

328

false

This entry represents a protein family associated with the ESX-1 type VII secretion system found in mycobacteria. This protein may be involved in the ESX-1 specialised secretion system and is required for DNA conjugation in recipient strains of Mycobacterium smegmatis [ ]. The protein is 377 amino acids (40.4 kDa) and ...

[]

0

[ "PFAM" ]

[ "PF27060" ]

[ "Mycobact_ESX1_assoc" ]

[ 328 ]

1

[]

0

[]

0

[ "PUB00106782" ]

[ "18554329" ]

[ "The specialized secretory apparatus ESX-1 is essential for DNA transfer in Mycobacterium smegmatis." ]

[ 2008 ]

1

[]

0

null

[ "Actinomycetes" ]

[ 328 ]

1

[]

0

true

Family

ESX-1 associated protein

ESX1-assoc

3

IPR059588

59,588

MJ1567-like domain

MJ1567-like_dom

Domain

366

false

This entry represents a domain that covers most of the sequence in MJ1567 from Methanocaldococcus jannaschii, and similar uncharacterised proteins found in archaea. The protein is 175 amino acids in length with a molecular weight of approximately 20.7 kDa. Its function remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27231" ]

[ "MJ1567" ]

[ 366 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "Bacteria candidate phyla", "Eukaryota" ]

[ 11, 2, 353 ]

3

[]

0

true

Domain

MJ1567-like domain

MJ1567-like_dom

2

IPR059589

59,589

YomX, C-terminal domain

YomX_C

Domain

307

false

This entry represents the C-terminal domain of YomX, an uncharacterised protein from Bacillus subtilis, and similar sequences from tailed bacteriophages and bacterial prophages. YomX is a 216 amino acid protein (gene BSU21190) derived from the SPbeta prophage in Bacillus subtilis strain 168. The specific function of th...

[]

0

[ "PFAM" ]

[ "PF27197" ]

[ "YomX_C" ]

[ 307 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "Viruses", "ecological metagenomes" ]

[ 254, 50, 3 ]

3

[]

0

true

Domain

YomX, C-terminal domain

YomX_C

7

IPR059590

59,590

MJ1566-like, N-terminal domain

MJ1566-like_N

Domain

378

false

This entry represents the N-terminal domain of MJ1566, an uncharacterised protein from Methanocaldococcus jannaschii. MJ1566 is a 447 amino acid multi-pass membrane protein (gene MJ1566) with two predicted transmembrane helices at the C terminus. This domain encompasses the soluble N-terminal region of the protein, exc...

[]

0

[ "PFAM" ]

[ "PF27230" ]

[ "MJ1566_N" ]

[ 378 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "Bacteria", "Eukaryota", "unclassified sequences" ]

[ 11, 3, 362, 2 ]

4

[]

0

true

Domain

MJ1566-like, N-terminal domain

MJ1566-like_N

4

IPR059591

59,591

YonV, C-terminal Rossmann-like domain

YonV_C

Domain

289

false

This entry represents the C-terminal domain of YonV, an uncharacterised protein from Bacillus subtilis. YonV is a 410 amino acid protein (gene BSU20980) derived from the SPbeta prophage in Bacillus subtilis strain 168. This domain adopts a Rossmann-like fold, which is typically associated with nucleotide binding. The p...

[]

0

[ "PFAM" ]

[ "PF27199" ]

[ "YonV_C" ]

[ 289 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Habropoda laboriosa", "Viruses", "bioreactor metagenome" ]

[ 273, 1, 11, 4 ]

4

[]

0

true

Domain

YonV, C-terminal Rossmann-like domain

YonV_C

9

IPR059592

59,592

YosH, C-terminal domain

YosH_C

Domain

295

false

This entry represents the C-terminal domain of the YosH protein found in Bacillus subtilis. YosH is 156 amino acids and is derived from the SPbeta prophage. YosH is encoded by the yosH gene (locus tag BSU20120) in Bacillus subtilis strain 168. The specific function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27286" ]

[ "YosH_C" ]

[ 295 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Caudoviricetes", "Mucor ambiguus", "human gut metagenome" ]

[ 246, 47, 1, 1 ]

4

[]

0

true

Domain

YosH, C-terminal domain

YosH_C

4

IPR059593

59,593

Mycobacterium phage L5 gene 78 protein

Phage_L5_Gp78

Family

282

false

This entry represents the gene 78 protein family found in L5-like mycobacteriophages. Gene 78 protein is an uncharacterised protein of 45 amino acids (5.5 kDa) found in Mycobacterium phage L5. The protein is predicted to be entirely disordered with regions enriched in basic and acidic residues.

[]

0

[ "PFAM" ]

[ "PF26884" ]

[ "Phage_L5_Gp78" ]

[ 282 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Mycobacteriaceae", "Viruses" ]

[ 12, 270 ]

2

[]

0

true

Family

Mycobacterium phage L5 gene 78 protein

Phage_L5_Gp78

5

IPR059594

59,594

PM0498-like

Family

277

false

This entry represents the PM0498 protein family, an uncharacterized PM0498 from Pasteurella multocida and similar proteins found in bacteria. The protein is 158 amino acids in length with a molecular weight of approximately 18.6 kDa. The function of this protein family remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27221" ]

[ "PM0498" ]

[ 277 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria" ]

[ 277 ]

1

[]

0

true

Family

PM0498-like

5

IPR059595

59,595

YomW

Family

268

false

This entry represents YomW proteins found in tailed bacteriophages and prophages mainly found in bacteria. YomW is an SPbeta prophage-derived protein of 168 amino acids. The protein is encoded by the yomW gene (locus tag BSU21200) in Bacillus subtilis strain 168. The function of this protein remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27256" ]

[ "YomW" ]

[ 268 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "Viruses", "bioreactor metagenome" ]

[ 189, 78, 1 ]

3

[]

0

true

Family

YomW

5

IPR059596

59,596

AF_0334-like

Domain

263

false

This entry represents the AF_0334 found in Archaeoglobus fulgidus, an uncharacterised protein, and similar sequences found in prokaryotes. The protein is 81 amino acids in length with a molecular weight of approximately 9.2 kDa. The function of this protein family remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27236" ]

[ "AF_0334" ]

[ 263 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaeoglobus fulgidus", "Bacteria", "ecological metagenomes" ]

[ 8, 248, 7 ]

3

[]

0

true

Domain

AF_0334-like

7

IPR059597

59,597

HI_0787-like, N-terminal domain

HI_0787-like_N

Domain

267

false

This entry represents the N-terminal domain of HI_0787 found in Haemophilus influenzae and similar uncharacterised proteins. HI_0787 is 201 amino acids encoded by locus HI_0787. The specific function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27257" ]

[ "HI_0787_N" ]

[ 267 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Methanomada group", "metagenomes" ]

[ 252, 3, 12 ]

3

[]

0

true

Domain

HI_0787-like, N-terminal domain

HI_0787-like_N

8

IPR059598

59,598

Bacteriophage T1 holin

Phage_T1_holin

Family

263

false

This entry represents the holin family found in T1-like bacteriophages. Holins are membrane proteins that control the precise timing of host cell lysis. The protein accumulates in the host cytoplasmic membrane until reaching a critical concentration that triggers formation of nanometer-scale pores, causing membrane dep...

[]

0

[ "PFAM" ]

[ "PF27028" ]

[ "Phage_T1_holin" ]

[ 263 ]

1

[]

0

[]

0

[ "PUB00162238" ]

[ "14972552" ]

[ "The genome and proteome of coliphage T1." ]

[ 2004 ]

1

[]

0

null

[ "Salmonella dublin", "Viruses" ]

[ 1, 262 ]

2

[]

0

true

Family

Bacteriophage T1 holin

Phage_T1_holin

3

IPR059599

59,599

CBUA0006-like, C-terminal domain

CBUA0006-like_C

Domain

256

false

This entry represents the C-terminal domain of the CBUA0006 protein found in Coxiella burnetii and similar sequences from legionellales. CBUA0006 is 341 amino acids and is encoded on plasmid pQpH1 (locus CBUA0006). The protein contains a coiled coil region at residues 153-179 and a C-terminal disordered region (this en...

[]

0

[ "PFAM" ]

[ "PF27266" ]

[ "CBUA0006_C" ]

[ 256 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Legionellales", "Physocladia obscura" ]

[ 255, 1 ]

2

[]

0

true

Domain

CBUA0006-like, C-terminal domain

CBUA0006-like_C

5

IPR059600

59,600

YfjC, C-terminal domain

YfjC_C

Domain

257

false

This entry represents the C-terminal domain of the YfjC protein found in Bacillus subtilis and similar sequences from bacillales. YfjC is 255 amino acids and is encoded by the yfjC gene (locus tag BSU08150) in Bacillus subtilis strain 168. The specific function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27282" ]

[ "YfjC_C" ]

[ 257 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria" ]

[ 257 ]

1

[]

0

true

Domain

YfjC, C-terminal domain

YfjC_C

1

IPR059601

59,601

TP0873-like, N-terminal domain

TP0873-like_N

Domain

251

false

This entry represents the N-terminal domain of TP0873 and similar uncharacterised proteins mainly found in Spirochaetota. TP0873 protein is approximately 200 amino acids. The specific function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27299" ]

[ "TP0873_N" ]

[ 251 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "ecological metagenomes" ]

[ 244, 7 ]

2

[]

0

true

Domain

TP0873-like, N-terminal domain

TP0873-like_N

9

IPR059602

59,602

Phage T4 Y10B

Phage_T4_Y10B

Family

242

false

This entry represents a group of uncharacterised proteins found in bacteriophages, including Y10B from bacteriophage T4, a 92 amino acid protein with a molecular weight of 11.0 kDa located in the Gp24-hoc intergenic region. The protein is also known as ORF2 or 24.2 and remains uncharacterised. The function of this prot...

[]

0

[ "PFAM" ]

[ "PF26862" ]

[ "Phage_T4_Y10B" ]

[ 242 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Plasmodium ovale", "Proteiniclasticum sediminis", "Viruses" ]

[ 1, 1, 240 ]

3

[]

0

true

Family

Phage T4 Y10B

Phage_T4_Y10B

6

IPR059603

59,603

Bacteriophage T4 protein Y07B

Phage_T4_Y07B

Family

240

false

This entry represents the Y07B protein family found in T4-like bacteriophages. Y07B is an uncharacterised protein of 95 amino acids (11.2 kDa) found in the segB-ipI intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF27001" ]

[ "Phage_T4_Y07B" ]

[ 240 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Viruses", "metagenomes" ]

[ 26, 212, 2 ]

3

[]

0

true

Family

Bacteriophage T4 protein Y07B

Phage_T4_Y07B

6

IPR059604

59,604

Type II restriction enzyme NspV

NspV

Family

236

false

This entry represents Type II restriction enzyme NspV from Nostoc sp. and similar bacterial sequences. NspV is a 220 amino acid P subtype restriction enzyme that recognises the double-stranded sequence 5'-TTCGAA-3' and cleaves after T-2 [ ]. The enzyme catalyses endonucleolytic cleavage of DNA to produce specific doubl...

[]

0

[ "PFAM" ]

[ "PF27258" ]

[ "NspV" ]

[ 236 ]

1

[]

0

[]

0

[ "PUB00162202" ]

[ "8367311" ]

[ "Cloning and expression of the NspV restriction-modification genes of Nostoc sp. strain PCC7524." ]

[ 1993 ]

1

[]

0

null

[ "Bacteria", "Cyprideis torosa", "Methanobacteriota", "metagenomes" ]

[ 224, 1, 6, 5 ]

4

[]

0

true

Family

Type II restriction enzyme NspV

NspV

6

IPR059605

59,605

YNQ2, N-terminal helical hairpin domain

YNQ2_hairpin

Domain

233

false

This entry represents the N-terminal helical hairpin domain of YNQ2, an uncharacterised protein from Paracoccus denitrificans. The protein is located in the nqo2 3' region and may be involved in the transfer of iron-sulfur clusters to the NADH dehydrogenase complex or in the assembly of the NADH dehydrogenase complex [...

[]

0

[ "PFAM" ]

[ "PF27169" ]

[ "YNQ2_hairpin" ]

[ 233 ]

1

[]

0

[ "9lts", "9ltv" ]

2

[ "PUB00162422" ]

[ "1909571" ]

[ "Characterization of the 25-kilodalton subunit of the energy-transducing NADH-ubiquinone oxidoreductase of Paracoccus denitrificans: sequence similarity to the 24-kilodalton subunit of the flavoprotein fraction of mammalian complex I." ]

[ 1991 ]

1

[]

0

null

[ "Rhodobacterales", "ecological metagenomes" ]

[ 230, 3 ]

2

[]

0

true

Domain

YNQ2, N-terminal helical hairpin domain

YNQ2_hairpin

8

IPR059608

59,608

Putative phage T5 terminase, small subunit

T5_Terminase_small

Family

230

false

This entry represents a putative terminase, small subunit protein from Phage T5. Terminases are involved in viral DNA packaging. It binds to the packaging initiation site and regulates the ATPase activity of the terminase large subunit. This family is part of a complex that includes both small and large terminase subun...

[]

0

[ "PFAM" ]

[ "PF26823" ]

[ "T5_Terminase_small" ]

[ 230 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses", "marine metagenome" ]

[ 224, 6 ]

2

[]

0

true

Family

Putative phage T5 terminase, small subunit

T5_Terminase_small

2

IPR059609

59,609

Receptor-binding protein pb5

Phage_T5_RBP5

Family

227

false

The Receptor-binding protein pb5 family is involved in the structural composition of the distal part of the bacteriophage T5 tail. It plays a crucial role in mediating the irreversible binding of the phage to its host's entry receptor, specifically the E. coli outer membrane ferrichrome transporter FhuA protein [ , ]. ...

[]

0

[ "PFAM" ]

[ "PF26860" ]

[ "Phage_T5_RBP5" ]

[ 227 ]

1

[]

0

[ "8a8c", "8b14" ]

2

[ "PUB00155631", "PUB00162247", "PUB00162248", "PUB00162249", "PUB00162250" ]

[ "36961893", "12051859", "22659573", "24014030", "36779755" ]

[ "Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.", "Characterization of a high-affinity complex between the bacterial outer membrane protein FhuA and the phage T5 protein pb5.", "New insights into pb5, the receptor binding protein of bacteriophage T5, and its int...

[ 2023, 2002, 2012, 2013, 2023 ]

5

[]

0

null

[ "Viruses" ]

[ 227 ]

1

[]

0

true

Family

Receptor-binding protein pb5

Phage_T5_RBP5

6

IPR059610

59,610

Uncharacterized protein YfbO domain

YfbO

Domain

225

false

This entry represents the YfbO protein, an uncharacterised protein found in Enterobacteriaceae. YfbO is found in Escherichia coli and related species within the Enterobacteria. The function of this protein family remains to be determined. In some members, this entry represents a domain, while in YfbO, this is the only ...

[]

0

[ "PFAM" ]

[ "PF27222" ]

[ "YfbO" ]

[ 225 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria" ]

[ 225 ]

1

[ "Escherichia coli (strain K12)" ]

[ 1 ]

1

true

Domain

Uncharacterized protein YfbO domain

YfbO

7

IPR059611

59,611

Phage T4 Y01E

Phage_T4_Y01E

Family

217

false

This entry represents protein Y01E found in bacteriophages. The prototype is from bacteriophage T4, a 60 amino acid protein with a molecular weight of 7.0 kDa located in the modB-mrh intergenic region. The protein is also known as dda.6 or modA.2 and remains uncharacterised. The function of this protein is unknown.

[]

0

[ "PFAM" ]

[ "PF26838" ]

[ "Phage_T4_Y01E" ]

[ 217 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 217 ]

1

[]

0

true

Family

Phage T4 Y01E

Phage_T4_Y01E

1

IPR059612

59,612

Nicking endonuclease

Phage_T5_Nicking_endo

Family

220

false

The Nicking endonuclease family is characterised by its role in introducing single-chain interruptions, or nicks, at specific positions in the minus strand of viral genomes. These nicks are crucial for the replication and processing of viral DNA, facilitating the separation and subsequent replication of the viral stran...

[]

0

[ "PFAM" ]

[ "PF26848" ]

[ "Phage_T5_Nicking_endo" ]

[ 220 ]

1

[]

0

[]

0

[ "PUB00096391" ]

[ "24198424" ]

[ "Insights into bacteriophage T5 structure from analysis of its morphogenesis genes and protein components." ]

[ 2014 ]

1

[]

0

null

[ "Viruses", "marine metagenome" ]

[ 214, 6 ]

2

[]

0

true

Family

Nicking endonuclease

Phage_T5_Nicking_endo

4

IPR059613

59,613

Y4lR, second domain

Y4lR_2nd

Domain

223

false

This entry represents the second domain of Y4lR, an uncharacterised protein from Sinorhizobium fredii. Y4lR is a 522 amino acid protein (gene NGR_a02600) located on the symbiotic plasmid pNGR234a. The protein is annotated as COG3318 in the eggNOG database and consists of four domains. This domain is the second in the m...

[]

0

[ "PFAM" ]

[ "PF27207" ]

[ "Y4lR_2nd" ]

[ 223 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "ecological metagenomes" ]

[ 221, 2 ]

2

[]

0

true

Domain

Y4lR, second domain

Y4lR_2nd

8

IPR059614

59,614

Bacteriophage T4 protein Y16K

Phage_T4_Y16K

Family

215

false

This entry represents the Y16K protein family found in T4-like bacteriophages. Y16K is an uncharacterised protein of 71 amino acids (8.1 kDa) found in the ndd-denB intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26909" ]

[ "Phage_T4_Y16K" ]

[ 215 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 215 ]

1

[]

0

true

Family

Bacteriophage T4 protein Y16K

Phage_T4_Y16K

9

IPR059615

59,615

Bacteriophage T4 protein Y05Q

Phage_T4_Y05Q

Family

211

false

This entry represents the Y05Q protein family found in T4-like bacteriophages. Y05Q is an uncharacterised protein of 70 amino acids (8.3 kDa) found in the ri-tk intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26904" ]

[ "Phage_T4_Y05Q" ]

[ 211 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 211 ]

1

[]

0

true

Family

Bacteriophage T4 protein Y05Q

Phage_T4_Y05Q

2

IPR059616

59,616

Phage T4 Y07D

Phage_T4_Y07D

Family

209

false

This entry represents protein Y07D found in bacteriophages. The prototype is from bacteriophage T4, a 61 amino acid protein with a molecular weight of 6.6 kDa located in the segB-ipI intergenic region. The protein is also known as ORF2, ipi.-1, or trnA.4 and is found in the T4 tRNA region. The function of this protein ...

[]

0

[ "PFAM" ]

[ "PF26870" ]

[ "Phage_T4_Y07D" ]

[ 209 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 209 ]

1

[]

0

true

Family

Phage T4 Y07D

Phage_T4_Y07D

1

IPR059617

59,617

Bacteriophage T4 Y12K

Phage_T4_Y12K

Family

206

false

This entry represents the Y12K protein family found in T4-like bacteriophages. Y12K is an uncharacterised protein of 95 amino acids (10.8 kDa) found in the Gp30-rIII intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26902" ]

[ "Phage_T4_Y12K" ]

[ 206 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 206 ]

1

[]

0

true

Family

Bacteriophage T4 Y12K

Phage_T4_Y12K

3

IPR059618

59,618

Bacteriophage T4 Y16C

Phage_T4_Y16C

Family

206

false

This entry represents the bacteriophage T4 Y16C protein family, an uncharacterised protein and its homologues. The protein is encoded in the intergenic region between the arn and motA genes in the T4 genome.

[]

0

[ "PFAM" ]

[ "PF26819" ]

[ "Phage_T4_Y16C" ]

[ 206 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 206 ]

1

[]

0

true

Family

Bacteriophage T4 Y16C

Phage_T4_Y16C

9

IPR059619

59,619

Phage T4 Y06J

Phage_T4_Y06J

Family

203

false

This entry represents uncharacterised proteins found in bacteriophages, including Y06J from bacteriophage T4, a 109 amino acid protein with a molecular weight of 12.8 kDa located in the regB-denV intergenic region. The protein is found in the early region of the T4 genome (58.3 to 65.5-kb region) and remains uncharacte...

[]

0

[ "PFAM" ]

[ "PF26834" ]

[ "Phage_T4_Y06J" ]

[ 203 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 203 ]

1

[]

0

true

Family

Phage T4 Y06J

Phage_T4_Y06J

9

IPR059620

59,620

YfjC, N-terminal domain

YfjC_N

Domain

208

false

This entry represents the N-terminal domain of YfjC, an uncharacterised protein found in Bacillaceae and related sequences mainly found in bacillales. The protein is primarily found in Bacillus species but also occurs in Paenibacillus and other members of the Bacillales order. YfjC is a 255 amino acid protein of unknow...

[]

0

[ "PFAM" ]

[ "PF27351" ]

[ "YfjC_N" ]

[ 208 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillati" ]

[ 208 ]

1

[]

0

true

Domain

YfjC, N-terminal domain

YfjC_N

6

IPR059621

59,621

Phage T7 protein 4.7

Phage_T7_4_7

Family

202

false

This entry represents a group of uncharacterised proteins found in bacteriophages, including protein 4.7 from bacteriophage T7, a 135 amino acid protein with a molecular weight of 15.2 kDa. The protein is also known as gene product 4.7 (Gp4.7) and remains uncharacterised. The function of this protein is unknown.

[]

0

[ "PFAM" ]

[ "PF26857" ]

[ "Phage_T7_4_7" ]

[ 202 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 202 ]

1

[]

0

true

Family

Phage T7 protein 4.7

Phage_T7_4_7

1

IPR059622

59,622

Y4oE

Family

203

false

This entry represents y4oE proteins from alphaproteobacteria. y4oE is a small protein of approximately 69 amino acids found on the symbiotic plasmid pNGR234a in Sinorhizobium fredii. y4oE proteins are associated with nitrogen-fixing symbionts and related bacteria. The function of this protein remains to be determined [...

[]

0

[ "PFAM" ]

[ "PF27437" ]

[ "Y4oE" ]

[ 203 ]

1

[]

0

[]

0

[ "PUB00004254" ]

[ "9163424" ]

[ "Molecular basis of symbiosis between Rhizobium and legumes." ]

[ 1997 ]

1

[]

0

null

[ "Alphaproteobacteria" ]

[ 203 ]

1

[]

0

true

Family

Y4oE

1

IPR059623

59,623

MoxZ

Family

198

false

This entry represents MoxZ proteins involved in methanol metabolism found in Paracoccus denitrificans and related proteobacterial species. MoxZ is a 154 amino acid protein that contains a prokaryotic lipoprotein domain. The protein is part of a two-component regulatory system controlling methanol dehydrogenase synthesi...

[]

0

[ "PFAM" ]

[ "PF27243" ]

[ "MoxZ" ]

[ 198 ]

1

[]

0

[]

0

[ "PUB00076236" ]

[ "8392137" ]

[ "Identification of a two-component regulatory system controlling methanol dehydrogenase synthesis in Paracoccus denitrificans." ]

[ 1993 ]

1

[]

0

null

[ "Bacteria", "marine sediment metagenome" ]

[ 195, 3 ]

2

[]

0

true

Family

MoxZ

4

IPR059624

59,624

Hendrixvirinae small terminase

Hendrixvirinae_terminase_S

Family

199

false

The Hendrixvirinae small terminase family is involved in the packaging of viral DNA into procapsids. The small subunit of the terminase complex binds to the packaging initiation site and regulates the ATPase activity of the large subunit. It recognizes the packaging sequence in the viral DNA, facilitating the transloca...

[]

0

[ "PFAM" ]

[ "PF26841" ]

[ "Hendrixvirinae_terminase_S" ]

[ 199 ]

1

[]

0

[ "6z6e", "8pop" ]

2

[ "PUB00162011", "PUB00162012" ]

[ "35947691", "39116131" ]

[ "Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system.", "Structural basis for DNA recognition by a viral genome-packaging machine." ]

[ 2022, 2024 ]

2

[]

0

null

[ "Bacteria", "Viruses", "bioreactor metagenome" ]

[ 178, 20, 1 ]

3

[]

0

true

Family

Hendrixvirinae small terminase

Hendrixvirinae_terminase_S

4

IPR059625

59,625

Uncharacterized protein gp12

Mup12

Family

202

false

This entry represents gene product 12 (gp12) found in Mu-like bacteriophages. Gp12 is an uncharacterised protein of 176 amino acids (19.9 kDa) that localises to the host cell cytoplasm. The protein is expressed in the early phase of the viral replicative cycle, with expression repressed by viral Repc and favoured by vi...

[]

0

[ "PFAM" ]

[ "PF26885" ]

[ "Phage_Mu_Gp12" ]

[ 202 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes", "Pseudomonadota", "marine sediment metagenome" ]

[ 5, 196, 1 ]

3

[]

0

true

Family

Uncharacterized protein gp12

Mup12

1

IPR059626

59,626

Y04H

Family

192

false

This entry represents Uncharacterized 7.9 kDa protein in Gp55-nrdG intergenic region (Y04H) found in bacteriophage T4 and related phages. Y04H (gene 55.8) is located in the intergenic region between genes Gp55 and nrdG in bacteriophage T4. The protein has a predicted molecular weight of 7.9 kDa and contains a hydrophob...

[]

0

[ "PFAM" ]

[ "PF26812" ]

[ "Phage_T4_Y04H" ]

[ 192 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Oceanobacillus luteolus", "Viruses" ]

[ 1, 191 ]

2

[]

0

true

Family

Y04H

4

IPR059628

59,628

Y4jL, C-terminal domain

Y4jL_C

Domain

190

false

This entry represents the C-terminal domain of the y4jL protein found in Sinorhizobium fredii. The full-length y4jL protein is 220 amino acids and is encoded on the symbiotic plasmid pNGR234a (locus NGR_a03030). The specific function of this C-terminal domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27262" ]

[ "y4jL_C" ]

[ 190 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Alphaproteobacteria" ]

[ 190 ]

1

[]

0

true

Domain

Y4jL, C-terminal domain

Y4jL_C

9

IPR059629

59,629

Alr1449

Domain

182

false

This entry represents the alr1449 domain found in uncharacterised proteins from bacteria mainly from cyanobacteria. The protein was identified in Nostoc sp. during analysis of cyanobacterial nif gene developmental rearrangement [ ] and is associated with nitrogen fixation processes. The function of this domain remains ...

[]

0

[ "PFAM" ]

[ "PF27270" ]

[ "Alr1449" ]

[ 182 ]

1

[]

0

[]

0

[ "PUB00161788" ]

[ "2123860" ]

[ "Developmental rearrangement of cyanobacterial nif genes: nucleotide sequence, open reading frames, and cytochrome P-450 homology of the Anabaena sp. strain PCC 7120 nifD element." ]

[ 1990 ]

1

[]

0

null

[ "Bacteria" ]

[ 182 ]

1

[]

0

true

Domain

Alr1449

1

IPR059630

59,630

Uncharacterized protein YoyE

YoyE

Family

183

false

This entry represents the YoyE protein family found in Bacillus species and related bacteria. YoyE is an uncharacterised protein of 41 amino acids.

[]

0

[ "PFAM" ]

[ "PF27057" ]

[ "YoyE" ]

[ 183 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillales" ]

[ 183 ]

1

[]

0

true

Family

Uncharacterized protein YoyE

YoyE

5

IPR059631

59,631

PM0109

Domain

175

false

This entry represents a domain covering the full length of a group of uncharacterised proteins of approximately 203 amino acids found in bacteria. The proteins are distributed across Pseudomonadati, with representatives in both Pseudomonadota and Bacteroidota. Members include protein PM0109 from Pasteurella multocida a...

[]

0

[ "PFAM" ]

[ "PF27385" ]

[ "PM0109" ]

[ 175 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Pseudomonadati" ]

[ 175 ]

1

[]

0

true

Domain

PM0109

9

IPR059632

59,632

Y12I

Family

174

false

This entry represents the Y12I protein family found in T4-like bacteriophages. Y12I is an uncharacterised protein of 68 amino acids (8.1 kDa) found in the Gp30-rIII intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26911" ]

[ "Phage_T4_Y12I" ]

[ 174 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 174 ]

1

[]

0

true

Family

Y12I

6

IPR059633

59,633

Y05D

Family

175

false

This entry represents the Y05D protein family found in T4-like bacteriophages. Y05D is an uncharacterised protein of 175 amino acids (20.7 kDa) found in the nrdC-mobD intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26901" ]

[ "Phage_T4_Y05D" ]

[ 175 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Dyella japonica DSM 16301", "Viruses" ]

[ 1, 174 ]

2

[]

0

true

Family

Y05D

3

IPR059634

59,634

Y11B

Family

174

false

This entry represents the Y11B protein family found in T4-like bacteriophages. Y11B is an uncharacterised protein of 74 amino acids (9.0 kDa) found in the uvsW-uvsY intergenic region of bacteriophage T4. The protein is encoded within the phage genome that infects Escherichia coli.

[]

0

[ "PFAM" ]

[ "PF26882" ]

[ "Phage_T4_Y11B" ]

[ 174 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Gammaproteobacteria", "Viruses" ]

[ 15, 159 ]

2

[]

0

true

Family

Y11B

9

IPR059635

59,635

Y05B

Family

174

false

This entry represents the Y05B protein family found in T4-like bacteriophages. Y05B is an uncharacterised protein of 275 amino acids (31.7 kDa) found in the nrdC-mobD intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26899" ]

[ "Phage_T4_Y05B" ]

[ 174 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 174 ]

1

[]

0

true

Family

Y05B

3

IPR059636

59,636

Y04M

Family

175

false

This entry represents the Y04M protein family found in T4-like bacteriophages. Y04M is an uncharacterised protein of 80 amino acids (9.4 kDa) found in the nrdC-mobD intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26914" ]

[ "Phage_T4_Y04M" ]

[ 175 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 175 ]

1

[]

0

true

Family

Y04M

9

IPR059637

59,637

Y01J

Family

172

false

This entry represents the Y01J protein family found in T4-like bacteriophages. Y01J is an uncharacterised protein of 68 amino acids (8.3 kDa) found in the mrh-soc intergenic region of bacteriophage T4. The protein is encoded within the phage genome that infects Escherichia coli.

[]

0

[ "PFAM" ]

[ "PF26878" ]

[ "Phage_T4_Y01J" ]

[ 172 ]

1

[]

0

[]

0

[ "PUB00162532" ]

[ "1692800" ]

[ "The bacteriophage T4 gene mrh whose product inhibits late T4 gene expression in an Escherichia coli rpoH (sigma 32) mutant." ]

[ 1990 ]

1

[]

0

null

[ "Viruses" ]

[ 172 ]

1

[]

0

true

Family

Y01J

4

IPR059638

59,638

Ea47

Domain

188

false

This entry represents the ea47 protein family found in lambda-like bacteriophages. Ea47 is an uncharacterised protein of 410 amino acids (48.1 kDa) found in bacteriophage lambda. This entry also covers the N-terminal domain in uncharacterised bacterial proteins.

[]

0

[ "PFAM" ]

[ "PF26900" ]

[ "Phage_lambda_Ea47" ]

[ 188 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)", "Lambdavirus", "Stenosarchaea group", "metagenomes" ]

[ 170, 1, 5, 8, 4 ]

5

[]

0

true

Domain

Ea47

3

IPR059639

59,639

Uncharacterized protein MJ0093

MJ0093

Domain

173

false

This entry represents the MJ0093, an uncharacterised protein found in Archaea. The protein is 142 amino acids in length. MJ0093 is found in Methanocaldococcus jannaschii and related archaeal species. The function of this protein family remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27275" ]

[ "MJ0093" ]

[ 173 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "ecological metagenomes" ]

[ 169, 4 ]

2

[]

0

true

Domain

Uncharacterized protein MJ0093

MJ0093

1

IPR059640

59,640

YvzJ, C-terminal domain

YvzJ_C

Domain

173

false

This entry represents a domain found in uncharacterised lipoproteins from Bacillaceae. The prototype protein YvzJ from Bacillus subtilis is a small lipoprotein of 69 amino acids with an N-terminal signal peptide and lipid anchor localised to the cell membrane. These proteins are found predominantly in Bacillus and rela...

[]

0

[ "PFAM" ]

[ "PF27474" ]

[ "YvzJ" ]

[ 173 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillales" ]

[ 173 ]

1

[]

0

true

Domain

YvzJ, C-terminal domain

YvzJ_C

8

IPR059641

59,641

YomX, N-terminal domain

YomX_N

Domain

169

false

This entry represents the N-terminal domain of YomX proteins found in bacteria. YomX is derived from the SPbeta prophage in Bacillus subtilis. While the full-length YomX protein is approximately 216 amino acids, the specific function of this N-terminal domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27289" ]

[ "YomX_N" ]

[ 169 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "Caudoviricetes", "bioreactor metagenome" ]

[ 162, 6, 1 ]

3

[]

0

true

Domain

YomX, N-terminal domain

YomX_N

3

IPR059642

59,642

YpzF

Family

172

false

This entry represents YpzF from Bacillus subtilis strain 168 and related Bacillus species. The function of this protein family remains unknown. This entry also includes putative Small EDRK-rich factor-like N-terminal domain-containing protein bacterial proteins.

[]

0

[ "PFAM" ]

[ "PF27078" ]

[ "YpzF" ]

[ 172 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillales" ]

[ 172 ]

1

[]

0

true

Family

YpzF

8

IPR059643

59,643

Gene 0.4 protein

GP04

Family

169

false

This entry represents gene product 0.4 (Gp0.4) from bacteriophage T7 and related phages. Gp0.4 is a 51-amino acid peptide that functions as a direct inhibitor of the bacterial cell division protein FtsZ [ ]. By binding to FtsZ and inhibiting its assembly both in vitro and in vivo, Gp0.4 prevents bacterial cell division...

[]

0

[ "PFAM" ]

[ "PF26807" ]

[ "Phage_T7_GP04" ]

[ 169 ]

1

[]

0

[]

0

[ "PUB00162251" ]

[ "24218612" ]

[ "Gene product 0.4 increases bacteriophage T7 competitiveness by inhibiting host cell division." ]

[ 2013 ]

1

[]

0

null

[ "Viruses" ]

[ 169 ]

1

[]

0

true

Family

Gene 0.4 protein

GP04

5

IPR059644

59,644

Y04F

Domain

164

false

This entry represents a small protein family from bacteriophage that includes the uncharacterized 7.0 kDa protein in Gp55-nrdG intergenic region y04F. The predicted structure of this domain shows similarity to the Tudor domain. Structure prediction suggests this protein may form homodimers.

[]

0

[ "PFAM" ]

[ "PF26806" ]

[ "Phage_T4_Y04F" ]

[ 164 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 164 ]

1

[]

0

true

Domain

Y04F

2

IPR059645

59,645

YkzB

Family

170

false

This entry represents YkzB proteins found in Bacilli, particularly in Bacillus and related genera. YkzB is a small protein of approximately 51 amino acids that contains a helical fold. The protein is found across 35 bacterial species, predominantly in the Bacillota phylum. The function of this protein remains to be det...

[]

0

[ "PFAM" ]

[ "PF27419" ]

[ "YkzB" ]

[ 170 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillales" ]

[ 170 ]

1

[]

0

true

Family

YkzB

2

IPR059646

59,646

CD-NTase-associated protein 8

Cap8

Domain

167

false

This entry represents CD-NTase-associated protein 8 (Cap8) proteins found in bacteria. Cap8 is a bacterial HORMA domain protein that functions as a component of the CBASS (cyclic oligonucleotide-based antiphage signaling system) [ , ]. CBASS provides immunity against bacteriophage by synthesising cyclic nucleotides tha...

[]

0

[ "PFAM" ]

[ "PF27322" ]

[ "Cap8" ]

[ 167 ]

1

[]

0

[ "6p8p", "6p8s" ]

2

[ "PUB00096608", "PUB00096609" ]

[ "32839535", "31932165" ]

[ "Diversity and classification of cyclic-oligonucleotide-based anti-phage signalling systems.", "HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity." ]

[ 2020, 2020 ]

2

[]

0

null

[ "Bacteria", "marine sediment metagenome" ]

[ 166, 1 ]

2

[]

0

true

Domain

CD-NTase-associated protein 8

Cap8

9

IPR059647

59,647

Uncharacterized protein gp18

Mup18

Family

166

false

This entry represents Uncharacterized protein gp18 (Mup18) in bacteriophages. The protein is also known as E18 and is expressed during the intermediate phase of the viral replicative cycle. The protein is localised to the host cell cytoplasm and has been detected at the transcript level. The specific function of this p...

[]

0

[ "PFAM" ]

[ "PF26867" ]

[ "Phage_Mu_gp18" ]

[ 166 ]

1

[]

0

[]

0

[ "PUB00056009", "PUB00162533" ]

[ "6240154", "23162549" ]

[ "Purification and properties of gene 18 product of bacteriophage T3.", "Novel murine dendritic cell lines: a powerful auxiliary tool for dendritic cell research." ]

[ 1984, 2012 ]

2

[]

0

null

[ "Bacteria", "Muvirus", "viral metagenome" ]

[ 162, 3, 1 ]

3

[]

0

true

Family

Uncharacterized protein gp18

Mup18

4

IPR059648

59,648

Y06M

Family

162

false

This entry represents the Y06M protein family found in T4-like bacteriophages. Y06M is an uncharacterised protein of 102 amino acids (12.2 kDa) found in the e-segB intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26896" ]

[ "Phage_T4_Y06M" ]

[ 162 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 162 ]

1

[]

0

true

Family

Y06M

5

IPR059649

59,649

MlpA

Domain

162

false

This entry represents MlpA lipoproteins found in Myxococcus and related bacteria. MlpA is a lipoprotein of approximately 236 amino acids that is processed from a precursor containing an N-terminal signal peptide. The mature protein is anchored to the cell membrane via lipid modifications at the N-terminal cysteine resi...

[]

0

[ "PFAM" ]

[ "PF27412" ]

[ "MlpA" ]

[ 162 ]

1

[]

0

[]

0

[ "PUB00162161" ]

[ "8335633" ]

[ "Oar, a 115-kilodalton membrane protein required for development of Myxococcus xanthus." ]

[ 1993 ]

1

[]

0

null

[ "Myxococcota" ]

[ 162 ]

1

[]

0

true

Domain

MlpA

7

IPR059650

59,650

HI1402

Domain

165

false

This entry represents a domain covering the whole length of HI1402 found in bacteria. Members are found across diverse bacterial lineages including Pseudomonadota, particularly in Gammaproteobacteria and Betaproteobacteria. The function of HI1402 remains to be determined. This domain can also be found at the C-terminal...

[]

0

[ "PFAM" ]

[ "PF27318" ]

[ "HI1402_helical" ]

[ 165 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes", "Pseudomonadati" ]

[ 8, 157 ]

2

[]

0

true

Domain

HI1402

9

IPR059651

59,651

YomO

Domain

162

false

This entry represents a domain covering the whole length of YomO found in SPbeta prophage- derived proteins in Bacillus species. YomO is a 166 amino acid protein encoded by the yomO gene (locus tag BSU21280) in Bacillus subtilis strain 168. The protein is derived from the SPbeta prophage. The function of this domain re...

[]

0

[ "PFAM" ]

[ "PF27287" ]

[ "YomO" ]

[ 162 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillales", "Caudoviricetes" ]

[ 145, 17 ]

2

[]

0

true

Domain

YomO

8

IPR059652

59,652

Y06O

Family

156

false

This entry represents protein Y06O found in bacteriophages. This protein is located in the e-segB intergenic region. The protein is also known as e.4 or msp5 and is found in the region between lysozyme and the tRNA genes. The function of this protein is unknown.

[]

0

[ "PFAM" ]

[ "PF26873" ]

[ "Phage_T4_Y06O" ]

[ 156 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 156 ]

1

[]

0

true

Family

Y06O

1

IPR059653

59,653

AF_1499

Family

158

false

This entry represents the AF_1499 protein family, an uncharacterised membrane protein found in Archaea. The protein is 234 amino acids in length with a molecular weight of approximately 25.6 kDa. The protein contains six predicted transmembrane helices and is predicted to be a multi-pass membrane protein localised to t...

[]

0

[ "PFAM" ]

[ "PF27259" ]

[ "AF_1499" ]

[ 158 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaeoglobus fulgidus", "Bacteria", "Eukaryota", "ecological metagenomes" ]

[ 5, 118, 33, 2 ]

4

[]

0

true

Family

AF_1499

1

IPR059654

59,654

Y13G

Family

153

false

This entry represents the Y13G protein family found in T4-like bacteriophages. Y13G is an uncharacterised protein of 66 amino acids (7.9 kDa) found in the cd-pseT intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26883" ]

[ "Phage_T4_Y13G" ]

[ 153 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 153 ]

1

[]

0

true

Family

Y13G

4

IPR059655

59,655

Y04J

Family

152

false

This entry represents protein Y04J found in bacteriophages. This protein is located in the pin-nrdC intergenic region in Enterobacteria phage T4. The protein is also known as 49.1 and is found in the T4 genome region between map positions 48.266 kb and 39.166 kb. The function of this protein is unknown [ ].

[]

0

[ "PFAM" ]

[ "PF26863" ]

[ "Phage_T4_Y04J" ]

[ 152 ]

1

[]

0

[]

0

[ "PUB00162534" ]

[ "3575111" ]

[ "Nucleotide sequence and primary structures of gene products coded for by the T4 genome between map positions 48.266 kb and 39.166 kb." ]

[ 1987 ]

1

[]

0

null

[ "Viruses" ]

[ 152 ]

1

[]

0

true

Family

Y04J

7

IPR059656

59,656

YomN

Domain

155

false

This entry represents the YomN protein. YomN is an uncharacterised protein originally identified in the SPbeta prophage of Bacillus subtilis. This domain is found in both bacterial and viral proteins, with representatives in Spbetavirus and other Caudoviricetes, as well as various bacterial species including Bacillales...

[]

0

[ "PFAM" ]

[ "PF27376" ]

[ "YomN" ]

[ 155 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "Viruses" ]

[ 130, 25 ]

2

[]

0

true

Domain

YomN

8

IPR059657

59,657

Y06P

Family

150

false

This entry represents protein Y06P found in bacteriophages. The prototype is from bacteriophage T4, a 202 amino acid protein with a molecular weight of 23.8 kDa located in the e-segB intergenic region. The protein is also known as e.5 or msp4 and is found in the region between lysozyme and the tRNA genes. The function ...

[]

0

[ "PFAM" ]

[ "PF26876" ]

[ "Phage_T4_Y06P" ]

[ 150 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 150 ]

1

[]

0

true

Family

Y06P

8

IPR059658

59,658

Y13C

Family

147

false

This entry represents the Y13C protein family found in T4-like bacteriophages. Y13C is an uncharacterised protein of 78 amino acids (9.4 kDa) found in the Gp31-cd intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26895" ]

[ "Phage_T4_Y13C" ]

[ 147 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 147 ]

1

[]

0

true

Family

Y13C

2

IPR059659

59,659

Uncharacterized protein AF_1253

AF_1253

Family

150

false

This entry represents the AF_1253 protein family, an uncharacterised protein found in Archaea. AF_1253 is found in Archaeoglobus fulgidus and related archaeal species. The function of this small protein family remains to be determined. This entry also represents uncharacterised bacterial proteins.

[]

0

[ "PFAM" ]

[ "PF27253" ]

[ "AF_1253" ]

[ 150 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Methanobacteriati", "ecological metagenomes" ]

[ 128, 14, 8 ]

3

[]

0

true

Family

Uncharacterized protein AF_1253

AF_1253

7