LiteFold/InterPro · Datasets at Hugging Face

IPR059660

59,660

Cgl2226

Domain

146

false

This entry represents Cgl2226 proteins found in Corynebacterium and related actinobacteria. The proteins are typically around 180 amino acids in length with a disordered C-terminal region rich in glycine residues. Cgl2226 has been detected in a cytochrome bc1-aa3 supercomplex in C. glutamicum, though its deletion does ...

[]

0

[ "PFAM" ]

[ "PF27333" ]

[ "Cgl2226" ]

[ 146 ]

1

[]

0

[]

0

[ "PUB00035558" ]

[ "12446663" ]

[ "Purification of a cytochrome bc-aa3 supercomplex with quinol oxidase activity from Corynebacterium glutamicum. Identification of a fourth subunity of cytochrome aa3 oxidase and mutational analysis of diheme cytochrome c1." ]

[ 2003 ]

1

[]

0

null

[ "Corynebacterium" ]

[ 146 ]

1

[]

0

true

Domain

Cgl2226

2

IPR059661

59,661

Y4bG, N-terminal domain

Y4bG_N

Domain

144

false

This entry represents the N-terminal domain of Y4bG proteins found in Sinorhizobium and related rhizobia. The full-length protein is 271 amino acids and contains a signal peptide at positions 1-22. Y4bG is encoded on the symbiotic plasmid pNGR234a in Sinorhizobium fredii, a bacterium involved in nitrogen-fixing symbios...

[]

0

[ "PFAM" ]

[ "PF27345" ]

[ "Y4bG_N" ]

[ 144 ]

1

[]

0

[]

0

[ "PUB00004254", "PUB00113962" ]

[ "9163424", "19376903" ]

[ "Molecular basis of symbiosis between Rhizobium and legumes.", "Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." ]

[ 1997, 2009 ]

2

[]

0

null

[ "Pseudomonadota" ]

[ 144 ]

1

[]

0

true

Domain

Y4bG, N-terminal domain

Y4bG_N

9

IPR059662

59,662

Y07A

Family

142

false

This entry represents the Y07A protein family found in T4-like bacteriophages. Y07A is an uncharacterised protein found in the e-segB intergenic region of bacteriophage T4. The protein is encoded within the phage genome that infects Escherichia coli. While the specific function of Y07A remains unknown, its genomic loca...

[]

0

[ "PFAM" ]

[ "PF26879" ]

[ "Phage_T4_Y07A" ]

[ 142 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 142 ]

1

[]

0

true

Family

Y07A

8

IPR059663

59,663

Mycolysin, middle domain

Mycolysin_M

Domain

141

false

This entry represents the 7-stranded β-sandwich domain of mycolysin found in Streptomyces cacaoi. The full-length mycolysin precursor is 550 amino acids with a signal peptide (residues 1-34). Mycolysin is a zinc-dependent metalloprotease that preferentially cleaves bonds with hydrophobic residues [ , ]. The mature enzy...

[]

0

[ "PFAM" ]

[ "PF27283" ]

[ "Mycolysin_M" ]

[ 141 ]

1

[]

0

[]

0

[ "PUB00162182", "PUB00162183" ]

[ "2341042", "1740443" ]

[ "Extracellular metalloprotease gene of Streptomyces cacaoi: structure, nucleotide sequence and characterization of the cloned gene product.", "Extracellular autoprocessing of a metalloprotease from Streptomyces cacaoi." ]

[ 1990, 1992 ]

2

[]

0

null

[ "Actinomycetes" ]

[ 141 ]

1

[]

0

true

Domain

Mycolysin, middle domain

Mycolysin_M

5

IPR059664

59,664

HI_1570-like domain

HI_1570

Domain

142

false

This entry represents a small domain of approximately 40 residues found in uncharacterised proteins from Pasteurellales and Neisseriales. In the 169 amino acid protein HI_1570 from Haemophilus influenzae strain Rd, this domain is located at the N-terminal. However, in many other proteins this domain occupies a central ...

[]

0

[ "PFAM" ]

[ "PF27613" ]

[ "HI_1570" ]

[ 142 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Pseudomonadota", "unclassified Caudoviricetes" ]

[ 139, 3 ]

2

[]

0

true

Domain

HI_1570-like domain

HI_1570

1

IPR059665

59,665

Lin0124, C-terminal domain

Lin0124_C

Domain

144

false

This entry represents the C-terminal domain of Lin0124 proteins. The domain forms a coiled-coil structure and is found in bacteria, particularly in Bacillota including Listeria. The function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27405" ]

[ "Lin0124_C" ]

[ 144 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Brassica carinata", "Viruses" ]

[ 112, 1, 31 ]

3

[]

0

true

Domain

Lin0124, C-terminal domain

Lin0124_C

7

IPR059666

59,666

SPbeta prophage YomF protein, N-terminal domain

YomF_N

Domain

139

false

This entry represents the N-terminal domain in YomF. The function of this domain remains unknown. YomF is an uncharacterised protein encoded by the SPbeta prophage in Bacillus subtilis. This protein contains an N-terminal domain , middle domain and a C-terminal domain .

[]

0

[ "PFAM" ]

[ "PF27067" ]

[ "YomF_N" ]

[ 139 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Mesorhabditis spiculigera", "Viruses" ]

[ 133, 1, 5 ]

3

[]

0

true

Domain

SPbeta prophage YomF protein, N-terminal domain

YomF_N

1

IPR059667

59,667

Exosporium protein A domain

CsxA

Domain

137

false

This entry represents the exosporium protein A (CsxA) family found in Clostridium species. CsxA localises to the exosporium, the outermost layer of the bacterial spore [ ]. The prototype member from Clostridium sporogenes is a 308 amino acid protein that forms part of the spore surface architecture. This protein is not...

[]

0

[ "PFAM" ]

[ "PF27077" ]

[ "CsxA" ]

[ 137 ]

1

[]

0

[]

0

[ "PUB00089400" ]

[ "27375261" ]

[ "Characterization of the spore surface and exosporium proteins of Clostridium sporogenes; implications for Clostridium botulinum group I strains." ]

[ 2016 ]

1

[]

0

null

[ "Clostridia", "bioreactor metagenome" ]

[ 136, 1 ]

2

[]

0

true

Domain

Exosporium protein A domain

CsxA

1

IPR059668

59,668

AtcB, N-terminal domain

AtcB_N

Domain

133

false

This entry represents the N-terminal domain of adaptation to cold protein B (AtcB) found primarily in Shewanella and related marine bacteria. This domain adopts a helix-turn-helix fold. AtcB is a protein of approximately 252 amino acids that modulates RNA polymerase activity and is involved in cold adaptation [ , ]. Th...

[]

0

[ "PFAM" ]

[ "PF27486" ]

[ "AtcB_N" ]

[ 133 ]

1

[]

0

[]

0

[ "PUB00161810", "PUB00161811" ]

[ "31482142", "33341675" ]

[ "Cold adaptation in the environmental bacterium <i>Shewanella oneidensis</i> is controlled by a J-domain co-chaperone protein network.", "Modulation of the RNA polymerase activity by AtcB, a protein associated with a DnaK chaperone network in Shewanella oneidensis." ]

[ 2019, 2021 ]

2

[]

0

null

[ "Bacteria" ]

[ 133 ]

1

[]

0

true

Domain

AtcB, N-terminal domain

AtcB_N

9

IPR059669

59,669

AtcB, C-terminal domain

AtcB_C

Domain

133

false

This entry represents the C-terminal domain of adaptation to cold protein B (AtcB) found primarily in Shewanella and related marine bacteria. AtcB is a protein of approximately 252 amino acids that modulates RNA polymerase activity and is involved in cold adaptation [ , ]. The protein interacts with RNA polymerase subu...

[]

0

[ "NCBIFAM", "PFAM" ]

[ "NF047889", "PF27450" ]

[ "ColdAdpAtcB", "AtcB_C" ]

[ 114, 133 ]

2

[]

0

[]

0

[ "PUB00161810", "PUB00161811" ]

[ "31482142", "33341675" ]

[ "Cold adaptation in the environmental bacterium <i>Shewanella oneidensis</i> is controlled by a J-domain co-chaperone protein network.", "Modulation of the RNA polymerase activity by AtcB, a protein associated with a DnaK chaperone network in Shewanella oneidensis." ]

[ 2019, 2021 ]

2

[]

0

null

[ "Bacteria" ]

[ 133 ]

1

[]

0

true

Domain

AtcB, C-terminal domain

AtcB_C

2

IPR059673

59,673

TP_0070

Family

123

false

This entry represents the uncharacterised protein TP_0070 from Treponema pallidum and related spirochetes. The protein is 128 amino acids in length and contains four transmembrane helices forming a four-helix bundle. The protein is predicted to be localised to the cell membrane as a multi-pass membrane protein. The fun...

[]

0

[ "PFAM" ]

[ "PF27362" ]

[ "TP_0070" ]

[ 123 ]

1

[]

0

[]

0

[ "PUB00008137" ]

[ "9665876" ]

[ "Complete genome sequence of Treponema pallidum, the syphilis spirochete." ]

[ 1998 ]

1

[]

0

null

[ "Bacteria", "Geodia barretti", "ecological metagenomes" ]

[ 120, 1, 2 ]

3

[]

0

true

Family

TP_0070

5

IPR059674

59,674

MJ0538

Domain

124

false

This entry represents the MJ0538 uncharacterised proteins found in archaea. This domain is found in thermophilic and hyperthermophilic archaea including Thermococcaceae, Thermococcus, and Methanococcales, with some members in Candidatus Micrarchaeota. The proteins are approximately 260 amino acids in length. The functi...

[]

0

[ "PFAM" ]

[ "PF27325" ]

[ "MJ0538" ]

[ 124 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "ecological metagenomes" ]

[ 116, 8 ]

2

[]

0

true

Domain

MJ0538

4

IPR059675

59,675

Y16H

Family

120

false

This entry represents the Y16H protein family found in T4-like bacteriophages. Y16H is an uncharacterised protein of 49 amino acids (4.8 kDa) found in the motA-Gp52 intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26886" ]

[ "Phage_T4_Y16H" ]

[ 120 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 120 ]

1

[]

0

true

Family

Y16H

6

IPR059676

59,676

Alr2735, C-terminal domain

Alr2735

Domain

116

false

This entry represents the C-terminal domain of Alr2735 proteins, whose function is unknown. This domain is found in cyanobacteria. These proteins are named after the alr2735 gene from Nostoc sp. PCC 7120.

[]

0

[ "PFAM" ]

[ "PF27288" ]

[ "Alr2735" ]

[ 116 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Cyanophyceae" ]

[ 116 ]

1

[]

0

true

Domain

Alr2735, C-terminal domain

Alr2735

1

IPR059677

59,677

Mycolysin, N-terminal domain

Mycolysin_N

Domain

115

false

This entry represents the N-terminal domain of mycolysin proteins found in Streptomyces and related actinomycetes. The domain adopts an immunoglobulin-like fold structure. Mycolysin is a secreted zinc metalloprotease ( ) that preferentially cleaves bonds with hydrophobic residues [ , ]. The protein undergoes extracellu...

[]

0

[ "PFAM" ]

[ "PF27334" ]

[ "Mycolysin_N" ]

[ 115 ]

1

[]

0

[]

0

[ "PUB00162182", "PUB00162183" ]

[ "2341042", "1740443" ]

[ "Extracellular metalloprotease gene of Streptomyces cacaoi: structure, nucleotide sequence and characterization of the cloned gene product.", "Extracellular autoprocessing of a metalloprotease from Streptomyces cacaoi." ]

[ 1990, 1992 ]

2

[]

0

null

[ "Actinomycetes", "Tetradesmus obliquus" ]

[ 113, 2 ]

2

[]

0

true

Domain

Mycolysin, N-terminal domain

Mycolysin_N

6

IPR059678

59,678

Y16N

Family

114

false

This entry represents the Y16N protein family found in T4-like bacteriophages. Y16N is an uncharacterised protein of 42 amino acids (5.0 kDa) found in the ndd-denB intergenic region of bacteriophage T4.

[]

0

[ "PFAM" ]

[ "PF26889" ]

[ "Phage_T4_Y16N" ]

[ 114 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 114 ]

1

[]

0

true

Family

Y16N

9

IPR059680

59,680

Tail fiber protein R

Tail_fiber_R

Family

114

false

This entry represents tail fiber protein R found in P1-like bacteriophages. This protein is a structural or assembly component of the tail fibres, which are essential for phage attachment to host cells. The protein is 144 amino acids in length and is encoded within the tail fibre operon of bacteriophage P1. Tail fibre ...

[]

0

[ "PFAM" ]

[ "PF26881" ]

[ "Phage_P1_tail_fiber_R" ]

[ 114 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes", "Gammaproteobacteria", "feces metagenome" ]

[ 12, 101, 1 ]

3

[]

0

true

Family

Tail fiber protein R

Tail_fiber_R

3

IPR059681

59,681

PopC secretion inhibitor

PopD

Domain

110

false

This entry represents the α-β plait fold domain found in PopD, a PopC secretion inhibitor from Myxococcus xanthus [ ]. PopD forms a cytoplasmic complex with PopC and inhibits PopC secretion and activity in non-starving cells. The protein is approximately 156 amino acids in length and contains a disordered N-terminal re...

[]

0

[ "PFAM" ]

[ "PF27478" ]

[ "PopD" ]

[ 110 ]

1

[]

0

[]

0

[ "PUB00082430" ]

[ "22404381" ]

[ "A RelA-dependent two-tiered regulated proteolysis cascade controls synthesis of a contact-dependent intercellular signal in Myxococcus xanthus." ]

[ 2012 ]

1

[]

0

null

[ "Bacteria" ]

[ 110 ]

1

[]

0

true

Domain

PopC secretion inhibitor

PopD

8

IPR059682

59,682

Alr2735, N-terminal domain

Alr2735_N

Domain

109

false

This entry represents the N-terminal domain of Alr2735 proteins found in cyanobacteria. Alr2735 proteins are found in Nostoc species. The full-length Alr2735 protein is approximately 210 amino acids. The specific function of this N-terminal domain remains to be determined. It contains an helical fold.

[]

0

[ "PFAM" ]

[ "PF27301" ]

[ "Alr2735_N" ]

[ 109 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Cyanophyceae" ]

[ 109 ]

1

[]

0

true

Domain

Alr2735, N-terminal domain

Alr2735_N

7

IPR059684

59,684

PM0294, middle domain

PM0294_M

Domain

105

false

This entry represents the middle domain of PM0294, an uncharacterised protein from Pasteurella multocida. PM0294 is 423 amino acids in length. This domain is found predominantly in Bacteroidota, particularly within Flavobacteriia and Sphingobacteriia. The function of this middle domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27496" ]

[ "PM0294_M" ]

[ 105 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Pseudomonadati" ]

[ 105 ]

1

[]

0

true

Domain

PM0294, middle domain

PM0294_M

8

IPR059685

59,685

Y05J

Family

105

false

This entry represents protein Y05J found in bacteriophages. The prototype is from bacteriophage T4, a small 34 amino acid protein with a molecular weight of 4.2 kDa located in the mobD-ri intergenic region. The protein is also known as mobD.2 or tk.-8 and is found in the nonessential region between the tk and nrdC gene...

[]

0

[ "PFAM" ]

[ "PF26864" ]

[ "Phage_T4_Y05J" ]

[ 105 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes" ]

[ 105 ]

1

[]

0

true

Family

Y05J

7

IPR059686

59,686

Uncharacterized protein gp6

Mup06

Family

103

false

This entry represents gene product 6 (gp6) found in bacteriophages. The prototype is from Escherichia phage Mu, a 76-amino-acid protein with a molecular weight of 8.5 kDa. Gp6 is an early protein expressed during the early phase of the viral replicative cycle. Expression is repressed by the viral Repc protein during la...

[]

0

[ "PFAM" ]

[ "PF26833" ]

[ "Phage_Mu_gp6" ]

[ 103 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes", "Pseudomonadota" ]

[ 31, 72 ]

2

[]

0

true

Family

Uncharacterized protein gp6

Mup06

4

IPR059688

59,688

YomR, C-terminal domain

YomR_C

Domain

106

false

This entry represents the C-terminal domain of YomR proteins derived from SPbeta prophage and related bacteriophages. This domain adopts a β-sandwich fold similar to phage tail base-plate receptor-binding proteins found in Siphoviridae. The protein is found across 28 species including both bacteria and viruses, particu...

[]

0

[ "PFAM" ]

[ "PF27455" ]

[ "YomR_C" ]

[ 106 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Caudoviricetes" ]

[ 103, 3 ]

2

[]

0

true

Domain

YomR, C-terminal domain

YomR_C

4

IPR059689

59,689

AZC_3924

Domain

98

false

This entry represents a small protein of approximately 84 amino acids found predominantly in bacteria. The protein is widely distributed across bacterial phyla including Pseudomonadota and Acidobacteriota, with representatives found in Alphaproteobacteria and Terriglobia. The function of this protein remains to be dete...

[]

0

[ "PFAM" ]

[ "PF27389" ]

[ "AZC_3924" ]

[ 98 ]

1

[]

0

[]

0

[ "PUB00161817" ]

[ "8471796" ]

[ "Azorhizobium caulinodans nitrogen fixation (nif/fix) gene regulation: mutagenesis of the nifA -24/-12 promoter element, characterization of a ntrA(rpoN) gene, and derivation of a model." ]

[ 1993 ]

1

[]

0

null

[ "Pseudomonadati" ]

[ 98 ]

1

[]

0

true

Domain

AZC_3924

4

IPR059690

59,690

MJ1308

Domain

93

false

This entry represents the MJ1308 family of small uncharacterised membrane proteins found in methanogenic archaea. The family is found across various methanogenic lineages including Methanobrevibacter, Methanobacterium, Methanosphaera, and Methanobacteriaceae. The proteins are approximately 108 amino acids in length and...

[]

0

[ "PFAM" ]

[ "PF27305" ]

[ "MJ1308" ]

[ 93 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "Clostridium paridis", "bioreactor metagenome" ]

[ 91, 1, 1 ]

3

[]

0

true

Domain

MJ1308

6

IPR059691

59,691

Y02C

Family

91

false

This entry represents protein Y02C found in bacteriophages. The prototype is from bacteriophage T4, a 49 amino acid protein with a molecular weight of 5.6 kDa located in the Gp42-imm intergenic region. The protein is also known as 42.1 or T4T045 and remains uncharacterised. The function of this protein is unknown.

[]

0

[ "PFAM" ]

[ "PF26865" ]

[ "Phage_T4_Y02C" ]

[ 91 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 91 ]

1

[]

0

true

Family

Y02C

9

IPR059692

59,692

Y4mA, C-terminal domain

Y4mA_C

Domain

92

false

This entry represents the C-terminal domain of y4mA proteins. The domain adopts an SH3-like fold structure and is found in bacteria, predominantly in Alphaproteobacteria with representatives in Hyphomicrobiales and Rhodobacterales orders. The function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27402" ]

[ "Y4mA_C" ]

[ 92 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Prasinoderma singulare", "Pseudomonadati", "ecological metagenomes", "uncultured Caudovirales phage" ]

[ 1, 83, 7, 1 ]

4

[]

0

true

Domain

Y4mA, C-terminal domain

Y4mA_C

4

IPR059693

59,693

MJ1579

Family

90

false

This entry represents the MJ1579 family of small uncharacterised proteins found exclusively in archaea. The family is found predominantly in thermophilic and hyperthermophilic archaea including Thermococcus, Methanococcaceae, Methanocaldococcaceae, and Thermococcaceae, with some members in candidate division MSBL1. The...

[]

0

[ "PFAM" ]

[ "PF27357" ]

[ "MJ1579" ]

[ 90 ]

1

[]

0

[ "6e4j", "6ns8" ]

2

[]

0

[]

0

null

[ "Archaea", "uncultured organism" ]

[ 89, 1 ]

2

[]

0

true

Family

MJ1579

2

IPR059694

59,694

Uncharacterized protein Gp2

Gp2

Domain

87

false

This entry represents gene product 2 (Gp2) found in N4-like bacteriophages. Gp2 is an uncharacterised protein of 161 amino acids (18.0 kDa) found in bacteriophage N4. Structure prediction strongly suggests that this protein forms homodimers which includes a strand swapped between the monomer structure.

[]

0

[ "PFAM" ]

[ "PF26984" ]

[ "Phage_N4_Gp2" ]

[ 87 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Lucilia cuprina", "Pseudomonadota", "Viruses" ]

[ 1, 2, 84 ]

3

[]

0

true

Domain

Uncharacterized protein Gp2

Gp2

6

IPR059697

59,697

Protein dhr

Dhr

Family

80

false

This entry represents the Dhr protein found in bacteriophages. The prototype is from Escherichia phage 186, a 66 amino acid protein with a molecular weight of 7.5 kDa. The protein is also known as CP78 and is classified as an early protein expressed during the lytic cycle. Dhr is involved in the depression of host DNA ...

[]

0

[ "PFAM" ]

[ "PF26872" ]

[ "Phage_186_Dhr" ]

[ 80 ]

1

[]

0

[]

0

[ "PUB00162226" ]

[ "2704043" ]

[ "DNA replication studies with coliphage 186. II. Depression of host replication by a 186 gene." ]

[ 1989 ]

1

[]

0

null

[ "Eganvirus", "Enterobacterales" ]

[ 4, 76 ]

2

[]

0

true

Family

Protein dhr

Dhr

1

IPR059699

59,699

YolB

Domain

73

false

This entry represents YolB proteins derived from SPbeta prophage and related bacteriophages. YolB is a small protein of approximately 118 amino acids found in the SPbeta prophage of Bacillus subtilis and related systems. The protein is found across 32 species including both bacteria and viruses, particularly in Bacilla...

[]

0

[ "PFAM" ]

[ "PF27433" ]

[ "YolB" ]

[ 73 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "Bacillus phage SPbeta" ]

[ 72, 1 ]

2

[]

0

true

Domain

YolB

8

IPR059700

59,700

AF_2048, N-terminal domain

AF_2048_N

Domain

75

false

This entry represents the N-terminal domain of the AF_2048 uncharacterised membrane proteins found exclusively in archaea. This domain is found in Methanosarcinaceae, particularly Methanosarcina, and Archaeoglobaceae including Archaeoglobus. The full-length proteins are approximately 307 amino acids and contain predict...

[]

0

[ "PFAM" ]

[ "PF27367" ]

[ "AF_2048_N" ]

[ 75 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Methanobacteriota" ]

[ 75 ]

1

[]

0

true

Domain

AF_2048, N-terminal domain

AF_2048_N

6

IPR059701

59,701

Flightin, C-terminal domain

Flightin_C

Domain

77

false

This entry represents the C-terminal domain of flightin. While the complete protein functions as a structural constituent of muscle with elasticity properties, the specific function of this C-terminal domain remains to be determined. Flightin is a myofibrillar protein found exclusively in the indirect flight muscles of...

[]

0

[ "PFAM" ]

[ "PF28577" ]

[ "Flightin_C" ]

[ 77 ]

1

[]

0

[ "8u8h" ]

1

[ "PUB00161963" ]

[ "8486738" ]

[ "Flightin, a novel myofibrillar protein of Drosophila stretch-activated muscles." ]

[ 1993 ]

1

[]

0

null

[ "Neoptera" ]

[ 77 ]

1

[ "Drosophila melanogaster" ]

[ 2 ]

1

true

Domain

Flightin, C-terminal domain

Flightin_C

7

IPR059702

59,702

ESX-1 scaffolding and assembly protein SaeC, N-terminal domain

SaeC_ESX1_N

Domain

73

false

This entry represents the N-terminal domain of the SaeC protein family, which functions as a scaffolding and assembly factor for the ESX-1 (ESAT-6 secretion system 1) type VII secretion system (T7SS) in mycobacteria. SaeC is involved in the assembly and polar localisation of the ESX-1 secretory apparatus, which exports...

[]

0

[ "PFAM" ]

[ "PF27062" ]

[ "SaeC_ESX1_N" ]

[ 73 ]

1

[]

0

[]

0

[ "PUB00161235" ]

[ "22233444" ]

[ "Polar assembly and scaffolding proteins of the virulence-associated ESX-1 secretory apparatus in mycobacteria." ]

[ 2012 ]

1

[]

0

null

[ "Actinomycetes" ]

[ 73 ]

1

[]

0

true

Domain

ESX-1 scaffolding and assembly protein SaeC, N-terminal domain

SaeC_ESX1_N

3

IPR059704

59,704

Y4bO, third domain

Y4bO_3rd

Domain

73

false

This entry represents the third domain of Y4bO, an uncharacterised protein from Sinorhizobium fredii. The protein is 606 amino acids in length and is encoded on the symbiotic plasmid pNGR234a. This domain is found in various bacterial species, predominantly in Pseudomonadati and Bacillati. The function of this domain r...

[]

0

[ "PFAM" ]

[ "PF27477" ]

[ "Y4bO_3rd" ]

[ 73 ]

1

[]

0

[]

0

[ "PUB00004254", "PUB00113962" ]

[ "9163424", "19376903" ]

[ "Molecular basis of symbiosis between Rhizobium and legumes.", "Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." ]

[ 1997, 2009 ]

2

[]

0

null

[ "Bacteria", "Ricinus communis" ]

[ 72, 1 ]

2

[]

0

true

Domain

Y4bO, third domain

Y4bO_3rd

9

IPR059705

59,705

ARB_05566, C-terminal domain

ARB_05566_C

Domain

72

false

This entry represents the C-terminal in ARB_05566-like secreted proteins found in fungal species. The protein contains a signal peptide (residues 1-15) followed by a mature secreted protein of 175 residues. The representative protein from Arthroderma benhamiae has been identified by mass spectrometry and confirmed to b...

[]

0

[ "PFAM" ]

[ "PF28392" ]

[ "ARB_05566_C" ]

[ 72 ]

1

[]

0

[]

0

[ "PUB00150849" ]

[ "21919205" ]

[ "Identification of novel secreted proteases during extracellular proteolysis by dermatophytes at acidic pH." ]

[ 2011 ]

1

[]

0

null

[ "leotiomyceta" ]

[ 72 ]

1

[]

0

true

Domain

ARB_05566, C-terminal domain

ARB_05566_C

8

IPR059706

59,706

Uncharacterized protein Gp1

Gp1

Family

69

false

This entry represents gene product 1 (Gp1) found in N4-like bacteriophages. Gp1 is an uncharacterised protein of 108 amino acids (12.2 kDa) located at the left end of the bacteriophage N4 genome. This entry also includes bacterial proteins.

[]

0

[ "PFAM" ]

[ "PF26891" ]

[ "Phage_N4_Gp1" ]

[ 69 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Pseudomonadota", "Viruses" ]

[ 11, 58 ]

2

[]

0

true

Family

Uncharacterized protein Gp1

Gp1

9

IPR059708

59,708

AF_1994, N-terminal domain

AF_1994_N

Domain

67

false

This entry represents the N-terminal domain of the AF_1994 proteins found in bacteria. The domain is found in diverse bacterial lineages including Flavobacteriaceae, Clostridiaceae, and Chitinophagaceae. The full-length proteins are approximately 236 amino acids and contain predicted signal peptides, indicating they ar...

[]

0

[ "PFAM" ]

[ "PF27311" ]

[ "AF_1994_N" ]

[ 67 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Methanobacteriota", "marine metagenome" ]

[ 51, 13, 3 ]

3

[]

0

true

Domain

AF_1994, N-terminal domain

AF_1994_N

2

IPR059709

59,709

Y4mA, N-terminal domain

Y4mA_N

Domain

67

false

This entry represents the N-terminal domain of y4mA proteins. The domain is found in bacteria, predominantly in Alphaproteobacteria with representatives in Hyphomicrobiales and Rhodobacterales orders. The function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27403" ]

[ "Y4mA_N" ]

[ 67 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Alphaproteobacteria", "marine sediment metagenome" ]

[ 66, 1 ]

2

[]

0

true

Domain

Y4mA, N-terminal domain

Y4mA_N

5

IPR059710

59,710

Gene 75 protein

Gp75

Family

66

false

This entry represents gene 75 protein (Gp75) found in mycobacteriophages. The prototype is from Mycobacterium phage L5, a small protein of 43 amino acids with a molecular weight of 4.9 kDa. Members of this family are found in bacteriophages that infect Mycobacterium species. The function of this protein remains unknown...

[]

0

[ "PFAM" ]

[ "PF26828" ]

[ "Phage_gp75" ]

[ 66 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes", "Mycolicibacterium" ]

[ 64, 2 ]

2

[]

0

true

Family

Gene 75 protein

Gp75

3

IPR059711

59,711

TP_0021, N-terminal domain

TP_0021_N

Domain

65

false

This entry represents the N-terminal domain of TP_0021 proteins. This domain adopts a helix-extended loop-helix (HeH) fold structure. The specific function of this domain remains to be determined. This domain can be found in predicted Helicase XPB/Ssl2 N-terminal domain-containing protein.

[]

0

[ "PFAM" ]

[ "PF27388" ]

[ "TP_0021_N" ]

[ 65 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Spirochaetia", "bioreactor metagenome" ]

[ 64, 1 ]

2

[]

0

true

Domain

TP_0021, N-terminal domain

TP_0021_N

7

IPR059712

59,712

AF_1447

Domain

66

false

This entry represents the AF_1447 small uncharacterised proteins found predominantly in bacteria with some archaeal members. The domain is found mainly in Bacteroidota, particularly Flavobacteriaceae and Flavobacterium, with additional members in Bacillota and some archaea. The proteins are approximately 81 amino acids...

[]

0

[ "PFAM" ]

[ "PF27350" ]

[ "AF_1447" ]

[ 66 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Methanobacteriota", "ecological metagenomes" ]

[ 51, 6, 9 ]

3

[]

0

true

Domain

AF_1447

8

IPR059713

59,713

Uncharacterised protein YtsF, C-terminal domain

YtsF_C

Domain

64

false

This entry represents the C-terminal domain of uncharacterised proteins found in Spiroplasma, Mycoplasma and Mesoplasma species. The prototype protein YtsF from Spiroplasma citri is located in the rpsB/tsf/x operon downstream of the elongation factor Ts gene [ ]. The protein is approximately 211 amino acids in length a...

[]

0

[ "PFAM" ]

[ "PF27468" ]

[ "YtsF" ]

[ 64 ]

1

[]

0

[]

0

[ "PUB00162427" ]

[ "2139649" ]

[ "Organization and nucleotide sequences of the Spiroplasma citri genes for ribosomal protein S2, elongation factor Ts, spiralin, phosphofructokinase, pyruvate kinase, and an unidentified protein." ]

[ 1990 ]

1

[]

0

null

[ "Mollicutes" ]

[ 64 ]

1

[]

0

true

Domain

Uncharacterised protein YtsF, C-terminal domain

YtsF_C

9

IPR059714

59,714

PXO2-26

pXO2_26

Domain

66

false

This entry represents protein pXO2-26 found in Bacillus anthracis plasmid pXO2. This protein is an uncharacterised membrane protein of 130 amino acids that contains a predicted transmembrane helix. The protein is encoded on plasmid pXO2, one of the virulence plasmids of Bacillus anthracis. The C-terminal part of the pr...

[]

0

[ "PFAM" ]

[ "PF27053" ]

[ "B_anthracis_pXO2_26" ]

[ 66 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota" ]

[ 66 ]

1

[]

0

true

Domain

PXO2-26

pXO2_26

7

IPR059715

59,715

Probable protease Gilli_2517, N-terminal domain

Gilli_2517_N

Domain

64

false

This entry represents the N-terminal in Probable protease Gilli_2517. This protein is part of a family of bacterial proteases that specifically cleave bacterial gasdermins (bGSDMs). These proteases are typically found adjacent to bacterial gasdermin genes and function as dedicated enzymes for gasdermin activation. The ...

[]

0

[ "PFAM" ]

[ "PF27061" ]

[ "Gasdermin_protease" ]

[ 64 ]

1

[]

0

[]

0

[ "PUB00100796" ]

[ "35025633" ]

[ "Bacterial gasdermins reveal an ancient mechanism of cell death." ]

[ 2022 ]

1

[]

0

null

[ "Bacteria" ]

[ 64 ]

1

[]

0

true

Domain

Probable protease Gilli_2517, N-terminal domain

Gilli_2517_N

4

IPR059716

59,716

AF_0896, middle domain

AF_0896_M

Domain

63

false

This entry represents the middle domain of AF_0896 and related uncharacterised proteins found in archaea. This domain is found predominantly in halophilic archaea including Natrialbaceae and Haloferacaceae, with some members in Nitrososphaeraceae. The full-length proteins are approximately 369 amino acids and contain t...

[]

0

[ "PFAM" ]

[ "PF27341" ]

[ "AF_0896_M" ]

[ 63 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "marine sediment metagenome" ]

[ 62, 1 ]

2

[]

0

true

Domain

AF_0896, middle domain

AF_0896_M

3

IPR059717

59,717

TP_0983

Domain

64

false

This entry represents a domain found in Uncharacterized protein TP_0983. The domain is found predominantly in Spirochaetota, with representatives in Treponema and Spirochaeta genera within the Spirochaetales order. The domain is present in proteins that contain an N-terminal signal peptide. The function of this domain ...

[]

0

[ "PFAM" ]

[ "PF27391" ]

[ "TP_0983" ]

[ 64 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Spirochaetia", "marine sediment metagenome" ]

[ 62, 2 ]

2

[]

0

true

Domain

TP_0983

8

IPR059718

59,718

TP_0437

Domain

60

false

This entry represents a domain found in Uncharacterized protein TP_0437. The domain is found predominantly in Spirochaetota, with representatives in Treponema and Spirochaeta genera within Spirochaetales order. The function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27399" ]

[ "TP_0437" ]

[ 60 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Spirochaetia" ]

[ 60 ]

1

[]

0

true

Domain

TP_0437

8

IPR059719

59,719

BioS, helical domain

BioS_helical

Domain

60

false

This entry represents the helical-like domain found in BioS, a biotin transport regulator from Sinorhizobium meliloti [ , ]. This domain is found predominantly in Alphaproteobacteria, particularly within Hyphomicrobiales including the Rhizobiaceae. While BioS is involved in biotin transport regulation, the specific fun...

[]

0

[ "PFAM" ]

[ "PF27488" ]

[ "BioS" ]

[ 60 ]

1

[]

0

[]

0

[ "PUB00161833", "PUB00161834" ]

[ "9304864", "10494632" ]

[ "A biotin-regulated locus, bioS, in a possible survival operon of Rhizobium meliloti.", "BioS, a biotin-induced, stationary-phase, and possible LysR-type regulator in Sinorhizobium meliloti." ]

[ 1997, 1999 ]

2

[]

0

null

[ "Pseudomonadota" ]

[ 60 ]

1

[]

0

true

Domain

BioS, helical domain

BioS_helical

4

IPR059720

59,720

Y06R

Family

58

false

This entry represents protein Y06R found in bacteriophages. The prototype is from bacteriophage T4, a 111 amino acid protein with a molecular weight of 13.1 kDa located in the e-segB intergenic region. The protein is also known as e.7 or msp2 and is found in the region between lysozyme and the tRNA genes. The function ...

[]

0

[ "PFAM" ]

[ "PF26875" ]

[ "Phage_T4_Y06R" ]

[ 58 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Viruses" ]

[ 58 ]

1

[]

0

true

Family

Y06R

2

IPR059721

59,721

Eai protein

Eai

Family

58

false

This entry represents the Eai protein found in bacteriophages. The prototype is from Salmonella phage P22, a 64 amino acid protein with a molecular weight of 7.0 kDa. The protein was identified in studies of phage P22 int gene regulation and remains uncharacterised. The function of this protein is unknown. This entry a...

[]

0

[ "PFAM" ]

[ "PF26866" ]

[ "Phage_P22_Eai" ]

[ 58 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes", "Enterobacterales" ]

[ 8, 50 ]

2

[]

0

true

Family

Eai protein

Eai

8

IPR059722

59,722

Coiled-coil domain-containing protein ORF29

ORF29_CC

Domain

58

false

This entry represents ORF29 found in bacteriophages. The prototype is from Helicobacter pylori bacteriophage KHP30, a 271 amino acid protein with a molecular weight of 30.3 kDa. The protein contains a predicted coiled-coil domain and has been identified by mass spectrometry in phage particles, indicating it is a struct...

[]

0

[ "PFAM" ]

[ "PF26853" ]

[ "Phage_ORF29_CC" ]

[ 58 ]

1

[]

0

[]

0

[ "PUB00089799" ]

[ "23475617" ]

[ "Characterization of Helicobacter pylori bacteriophage KHP30." ]

[ 2013 ]

1

[]

0

null

[ "Campylobacterales", "Schmidvirus" ]

[ 55, 3 ]

2

[]

0

true

Domain

Coiled-coil domain-containing protein ORF29

ORF29_CC

4

IPR059723

59,723

Internal protein III

IpIII

Family

57

false

This entry represents internal protein III (IpIII) found in bacteriophages. The prototype is from bacteriophage T4, a 193-amino-acid protein with a molecular weight of 21.7 kDa. The protein is synthesised as a precursor with an N-terminal propeptide that is cleaved by prohead core protease GP21 during phage head matura...

[]

0

[ "PFAM" ]

[ "PF26861" ]

[ "Phage_T4_IpIII" ]

[ 57 ]

1

[]

0

[]

0

[ "PUB00162545", "PUB00162546" ]

[ "1069310", "24113" ]

[ "Protein cleavage during virus assembly: a novel specificity of assembly dependent cleavage in bacteriophage T4.", "Teeth modifications and their socio-economic and political significance among some peoples of the world and early Filipinos." ]

[ 1976, 1975 ]

2

[]

0

null

[ "Caudoviricetes" ]

[ 57 ]

1

[]

0

true

Family

Internal protein III

IpIII

6

IPR059724

59,724

YmgI-like domain

YmgI

Domain

61

false

This entry represents the YmgI domain found in bacteria. This domain is found in Escherichia coli (gene ymgI, locus b4593) and related bacterial proteins. The function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF28591" ]

[ "YmgI" ]

[ 61 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Enterobacteriaceae" ]

[ 61 ]

1

[ "Escherichia coli (strain K12)" ]

[ 1 ]

1

true

Domain

YmgI-like domain

YmgI

3

IPR059725

59,725

TP_0813, N-terminal domain

TP_0813_N

Domain

56

false

This entry represents the N-terminal domain of TP_0813 proteins found primarily in Treponema and related spirochaetes. This domain forms a helical bundle structure. The protein is found across the Spirochaetota phylum within the Spirochaetales order. TP_0813 proteins are particularly abundant in Treponema species. The ...

[]

0

[ "PFAM" ]

[ "PF27435" ]

[ "TP_0813_N" ]

[ 56 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Pseudomonadati", "ecological metagenomes" ]

[ 54, 2 ]

2

[]

0

true

Domain

TP_0813, N-terminal domain

TP_0813_N

2

IPR059726

59,726

TP_0927

Domain

55

false

This entry represents TP_0927 proteins found primarily in Treponema and related spirochaetes. The protein is found mainly in Spirochaetota phylum within the Spirochaetales order. TP_0927 proteins are particularly abundant in Treponema species. The function of this protein remains to be determined. This proteins contain...

[]

0

[ "PFAM" ]

[ "PF27440" ]

[ "TP_0927" ]

[ 55 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Spirochaetia" ]

[ 55 ]

1

[]

0

true

Domain

TP_0927

3

IPR059727

59,727

Putative rubredoxin, C-terminal domain

RdxA_C

Domain

54

false

This entry represents the C-terminal domain in putative rubredoxin from Methanothermobacter thermautotrophicus and related proteins found in archaea and bacteria. This domain is found predominantly in methanogenic archaea including Methanobacteriaceae and Methanobacterium, with some members in sulphate-reducing bacteri...

[]

0

[ "PFAM" ]

[ "PF27323" ]

[ "RdxA_C" ]

[ 54 ]

1

[]

0

[]

0

[ "PUB00042737" ]

[ "7649162" ]

[ "Characterization of a 45-kDa flavoprotein and evidence for a rubredoxin, two proteins that could participate in electron transport from H2 to CO2 in methanogenesis in Methanobacterium thermoautotrophicum." ]

[ 1995 ]

1

[]

0

null

[ "Bacteria", "Methanobacteriota", "marine sediment metagenome" ]

[ 15, 37, 2 ]

3

[]

0

true

Domain

Putative rubredoxin, C-terminal domain

RdxA_C

8

IPR059728

59,728

AF_2379

Domain

56

false

This entry represents the AF_2379 small uncharacterised proteins found in sulphate-reducing bacteria and archaea. The family is predominantly found in Thermodesulfobacteriota, particularly in Desulfobacteraceae, Desulfosarcinaceae, and Desulfococcaceae, with some members in Archaeoglobaceae. The function of this protei...

[]

0

[ "PFAM" ]

[ "PF27306" ]

[ "AF_2379" ]

[ 56 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Methanobacteriota", "marine sediment metagenome" ]

[ 30, 16, 10 ]

3

[]

0

true

Domain

AF_2379

5

IPR059729

59,729

YonJ, middle domain

YonJ_middle

Domain

55

false

This entry represents the middle coiled-coil domain of uncharacterised YonJ proteins found in bacteria and viruses. The full-length proteins are distributed across both Bacillati and viruses, including members from Paenibacillus species and Spbetavirus. Members include YonJ from Bacillus subtilis, which is derived from...

[]

0

[ "PFAM" ]

[ "PF27387" ]

[ "YonJ_CC" ]

[ 55 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "Viruses" ]

[ 42, 13 ]

2

[]

0

true

Domain

YonJ, middle domain

YonJ_middle

4

IPR059730

59,730

RepA, N-terminal domain

WHD_RepA_N

Domain

52

false

This entry represents the N-terminal winged helix-turn-helix (HTH) domain found in plasmid replication initiator proteins of the RepA family. This domain is found in proteins from Bacillales and related Bacillota. The exemplar RepA protein from Bacillus subtilis plasmid pRAT11 is a 396 amino acid protein involved in pl...

[]

0

[ "PFAM" ]

[ "PF27612" ]

[ "WHD_RepA_N" ]

[ 52 ]

1

[]

0

[]

0

[ "PUB00009486" ]

[ "3041379" ]

[ "RepA protein- and oriR-dependent initiation of R1 plasmid replication: identification of a rho-dependent transcription terminator required for cis-action of repA protein." ]

[ 1988 ]

1

[]

0

null

[ "Bacillota", "Rhizophagus irregularis (strain DAOM 197198w)" ]

[ 51, 1 ]

2

[]

0

true

Domain

RepA, N-terminal domain

WHD_RepA_N

7

IPR059731

59,731

TP_0679

Domain

51

false

This entry represents TP_0679 membrane proteins found primarily in Treponema and related spirochaetes. TP_0679 is a small membrane protein of approximately 105 amino acids that contains three predicted transmembrane helical regions. The protein forms a helical bundle structure and is predicted to be localised to the ce...

[]

0

[ "PFAM" ]

[ "PF27420" ]

[ "TP_0679" ]

[ 51 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Spirochaetia" ]

[ 51 ]

1

[]

0

true

Domain

TP_0679

7

IPR059732

59,732

TP_0183, C-terminal

TP_0183_C

Domain

50

false

This entry represents the C-terminal domain of TP_0183 proteins found primarily in Treponema and related spirochaetes. This domain adopts an avidin-like fold structure. The function of this domain remains to be determined. TP_0183 is a protein of approximately 281 amino acids that is processed from a precursor containi...

[]

0

[ "PFAM" ]

[ "PF27487" ]

[ "TP_0183_C" ]

[ 50 ]

1

[]

0

[]

0

[ "PUB00162494" ]

[ "18509523" ]

[ "The binary protein interactome of Treponema pallidum--the syphilis spirochete." ]

[ 2008 ]

1

[]

0

null

[ "Spirochaetia" ]

[ 50 ]

1

[]

0

true

Domain

TP_0183, C-terminal

TP_0183_C

9

IPR059733

59,733

Protein 0.6

0_6

Family

51

false

This entry represents protein 0.6 found in bacteriophages. The prototype is from bacteriophage T7, which exists as two forms due to frameshifting: protein 0.6A (53 amino acids) and protein 0.6B (111 amino acids, 13.2 kDa). Protein 0.6B results from a frameshift that occurs prior to the TGA stop codon of 0.6A. The prote...

[]

0

[ "PFAM" ]

[ "PF26851" ]

[ "Phage_T7_0_6" ]

[ 51 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes" ]

[ 51 ]

1

[]

0

true

Family

Protein 0.6

0_6

4

IPR059734

59,734

YorE

Domain

52

false

This entry represents a domain covering the whole length of YorE, an uncharacterised protein from the SPbeta prophage of Bacillus subtilis. The protein is 123 amino acids in length and adopts a YaeB-like fold. YorE is found predominantly in bacteriophages, particularly Spbetavirus within Caudoviricetes, as well as in b...

[]

0

[ "PFAM" ]

[ "PF27492" ]

[ "YorE" ]

[ 52 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "Bacillus phage SPbeta" ]

[ 51, 1 ]

2

[]

0

true

Domain

YorE

9

IPR059735

59,735

STK_12200

Domain

48

false

This entry represents the N-terminal in STK_12200 and related uncharacterised proteins found exclusively in thermoacidophilic archaea. This domain is found in Thermoproteota, particularly Sulfolobaceae including Sulfurisphaera, Acidianus, and Metallosphaera. The proteins are approximately 163 amino acids in length and ...

[]

0

[ "PFAM" ]

[ "PF27373" ]

[ "STK_12200" ]

[ 48 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Sulfolobaceae" ]

[ 48 ]

1

[]

0

true

Domain

STK_12200

4

IPR059736

59,736

MJECL32

Domain

49

false

This entry represents the N-terminal in MJECL32 found in uncharacterised proteins in archaea and bacteria. This domain is found in diverse lineages including Methanocaldococcaceae, Haloferacaceae, and Halobacteriales in archaea, and Bacillaceae in bacteria. The function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27326" ]

[ "MJECL32" ]

[ 49 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "Bacteria", "marine sediment metagenome" ]

[ 28, 20, 1 ]

3

[]

0

true

Domain

MJECL32

7

IPR059737

59,737

MJ0788

Domain

46

false

This entry represents MJ0788 and related small uncharacterised proteins found exclusively in methanogenic archaea. The family is found across various methanogenic lineages including Methanobacteriaceae, Methanobrevibacter, Methanobacterium, Methanomicrobiaceae, and Methanocaldococcaceae. The proteins are approximately ...

[]

0

[ "PFAM" ]

[ "PF27370" ]

[ "MJ0788" ]

[ 46 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Candidatus Zambryskibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_34_34", "Methanobacteriota", "Methanocaldococcus fervens tailed virus 1", "bioreactor metagenome" ]

[ 1, 43, 1, 1 ]

4

[]

0

true

Domain

MJ0788

3

IPR059738

59,738

YonG, C-terminal domain

YonG_C

Domain

48

false

This entry represents the C-terminal domain of YonG proteins found in bacteria and viruses. YonG proteins are derived from prophage elements such as SPbeta in Bacillus subtilis. Members of this domain are also found in Spbetavirus. The specific function of this C-terminal domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27316" ]

[ "YonG_C" ]

[ 48 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillota", "Caudoviricetes" ]

[ 43, 5 ]

2

[]

0

true

Domain

YonG, C-terminal domain

YonG_C

2

IPR059739

59,739

PIF6, PH domain

PH_PIF6

Domain

47

false

This entry represents the N-terminal PH domain found in the PIF6 protein , which is a DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of genome stability.

[]

0

[ "PFAM" ]

[ "PF26661" ]

[ "PH_PIF6" ]

[ 47 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Euglenozoa" ]

[ 47 ]

1

[]

0

true

Domain

PIF6, PH domain

PH_PIF6

3

IPR059740

59,740

Internal protein II

IpII

Family

42

false

This entry represents internal protein II (IpII) found in bacteriophages. The prototype is from bacteriophage T4, a 100 amino acid protein with a molecular weight of 11.1 kDa. The protein is synthesised as a precursor with an N-terminal propeptide that is cleaved by prohead core protease GP21 during phage maturation. I...

[]

0

[ "PFAM" ]

[ "PF26874" ]

[ "Phage_T4_IpII" ]

[ 42 ]

1

[]

0

[]

0

[ "PUB00162243" ]

[ "1271467" ]

[ "Primary structure of bacteriophage T4 internal protein II and characterization of the cleavage upon phage maturation." ]

[ 1976 ]

1

[]

0

null

[ "Viruses" ]

[ 42 ]

1

[]

0

true

Family

Internal protein II

IpII

1

IPR059741

59,741

TP_0747, N-terminal domain

TP_0747_N

Domain

40

false

This entry represents the N-terminal domain of TP_0747, an uncharacterised protein from Treponema pallidum. TP_0747 is 344 amino acids in length and contains a disordered region. This domain is found predominantly in Spirochaetota, particularly within Spirochaetales including Treponemataceae, Spirochaetaceae and Brezna...

[]

0

[ "PFAM" ]

[ "PF27497" ]

[ "TP_0747_N" ]

[ 40 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Potamilus streckersoni", "Spirochaetia", "marine sediment metagenome" ]

[ 1, 38, 1 ]

3

[]

0

true

Domain

TP_0747, N-terminal domain

TP_0747_N

3

IPR059742

59,742

Superinfection exclusion protein A

SIEA

Family

35

false

The Superinfection exclusion protein A family is involved in preventing the entry of phage DNA into the cytoplasm by blocking its transfer across the inner membrane. This mechanism provides protection against superinfection by phages of the same family and also against DNA from other phages [ ]. This entry also include...

[]

0

[ "PFAM" ]

[ "PF26849" ]

[ "SIEA" ]

[ 35 ]

1

[]

0

[]

0

[ "PUB00162295" ]

[ "7768804" ]

[ "The superinfection exclusion gene (sieA) of bacteriophage P22: identification and overexpression of the gene and localization of the gene product." ]

[ 1995 ]

1

[]

0

null

[ "Lederbergvirus", "Pseudomonadota" ]

[ 5, 30 ]

2

[]

0

true

Family

Superinfection exclusion protein A

SIEA

1

IPR059743

59,743

Beta-methylindole-3-pyruvate reductase, C-terminal domain

Ind2_C

Domain

43

false

This entry represents the C-terminal domain of beta-methylindole- 3-pyruvate reductase (Ind2) found in Streptomyces species and related actinobacteria. This domain forms part of an enzyme involved in indolmycin biosynthesis, an antibiotic that inhibits bacterial tryptophan-tRNA synthetases [ ]. The complete enzyme cata...

[]

0

[ "PFAM" ]

[ "PF27054" ]

[ "Beta_methylindole_red_C" ]

[ 43 ]

1

[]

0

[]

0

[ "PUB00161827" ]

[ "25730866" ]

[ "In vitro reconstitution of indolmycin biosynthesis reveals the molecular basis of oxazolinone assembly." ]

[ 2015 ]

1

[]

0

null

[ "Bacteria", "Candidatus Methanogaster sp. ANME-2c ERB4", "Sar", "ecological metagenomes" ]

[ 35, 1, 4, 3 ]

4

[]

0

true

Domain

Beta-methylindole-3-pyruvate reductase, C-terminal domain

Ind2_C

5

IPR059744

59,744

Putative protein p49

Put_P49

Family

33

false

This entry represents protein p49 found in APSE-1-like bacteriophages. Protein p49 is an uncharacterised protein of 90 amino acids (10.5 kDa) found in bacteriophage APSE-1 that infects the secondary endosymbiont of Acyrthosiphon pisum [ ].

[]

0

[ "PFAM" ]

[ "PF26917" ]

[ "Phage_APSE1_p49" ]

[ 33 ]

1

[]

0

[]

0

[ "PUB00162547" ]

[ "10489345" ]

[ "Isolation and characterization of APSE-1, a bacteriophage infecting the secondary endosymbiont of Acyrthosiphon pisum." ]

[ 1999 ]

1

[]

0

null

[ "Aphis craccivora", "Enterobacterales", "Sendosyvirus" ]

[ 1, 30, 2 ]

3

[]

0

true

Family

Putative protein p49

Put_P49

5

IPR059745

59,745

Probable regulatory protein N

Prob_reg_N

Family

33

false

This entry represents the N antitermination protein found in bacteriophages. The prototype is from bacteriophage phi-80, a 98 amino acid protein with a molecular weight of 11.7 kDa. The N protein functions as a transcriptional antitermination factor, allowing RNA polymerase to read through transcription termination sig...

[]

0

[ "PFAM" ]

[ "PF26859" ]

[ "Phage_N_antitermin" ]

[ 33 ]

1

[]

0

[]

0

[ "PUB00162231" ]

[ "4065570" ]

[ "Characterization and sequencing of the region containing gene N, the nutL site and tL1 terminator of bacteriophage phi 80." ]

[ 1985 ]

1

[]

0

null

[ "Bacteria", "Caudoviricetes" ]

[ 28, 5 ]

2

[]

0

true

Family

Probable regulatory protein N

Prob_reg_N

7

IPR059746

59,746

SPbeta prophage YomF protein, middle domain

YomF_M

Domain

30

false

This entry represents the middle domain in YomF. The function of this domain remains unknown. YomF is an uncharacterised protein encoded by the SPbeta prophage in Bacillus subtilis. This protein contains an N-terminal domain , middle domain and a C-terminal domain .

[]

0

[ "PFAM" ]

[ "PF27068" ]

[ "YomF_M" ]

[ 30 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillus", "Bacillus phage SPbeta" ]

[ 29, 1 ]

2

[]

0

true

Domain

SPbeta prophage YomF protein, middle domain

YomF_M

4

IPR059747

59,747

Gene 45 protein

Gp45

Domain

28

false

This entry represents the gene 45 protein found in L5-like mycobacteriophages. Gene 45 protein is an uncharacterised protein of 97 amino acids (10.7 kDa) found in Mycobacterium phage L5.

[]

0

[ "PFAM" ]

[ "PF26905" ]

[ "Phage_L5_Gp45" ]

[ 28 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes", "Mycolicibacterium" ]

[ 26, 2 ]

2

[]

0

true

Domain

Gene 45 protein

Gp45

7

IPR059748

59,748

UL148B

Family

27

false

This entry represents protein UL148B found in human cytomegalovirus. UL148B is an uncharacterised membrane protein of 80 amino acids (8.9 kDa) that localises to the host membrane. The protein contains a predicted transmembrane helix (residues 10-30).

[]

0

[ "PFAM" ]

[ "PF26987" ]

[ "HCMV_UL148B" ]

[ 27 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Cytomegalovirus" ]

[ 27 ]

1

[]

0

true

Family

UL148B

4

IPR059749

59,749

MJ1491, transmembrane domain

MJ1491_TM

Domain

31

false

This entry represents the MJ1491 transmembrane domain found in uncharacterised membrane proteins in archaea and bacteria. This domain is found predominantly in methanogenic archaea including Methanocaldococcaceae and Methanococcales, with some bacterial members. The domain contains three predicted transmembrane helices...

[]

0

[ "PFAM" ]

[ "PF27404" ]

[ "MJ1491" ]

[ 31 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Methanobacteriota", "marine sediment metagenome" ]

[ 8, 22, 1 ]

3

[]

0

true

Domain

MJ1491, transmembrane domain

MJ1491_TM

9

IPR059750

59,750

AF_1283 family

AF_1283

Family

26

false

This entry represents the AF_1283 family of small membrane proteins found exclusively in thermophilic archaea. The family is found in Archaeoglobaceae, particularly Archaeoglobus and Ferroglobus, and Ferroplasmaceae. The proteins are approximately 100 amino acids in length and contain three predicted transmembrane heli...

[]

0

[ "PFAM" ]

[ "PF27384" ]

[ "AF_1283" ]

[ 26 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Methanobacteriati" ]

[ 26 ]

1

[]

0

true

Family

AF_1283 family

AF_1283

2

IPR059751

59,751

AF_2141 family

AF_2141

Family

27

false

This entry represents the AF_2141 family of uncharacterised proteins found predominantly in archaea with some bacterial members. The family is found mainly in Archaeoglobaceae, particularly Archaeoglobus, with additional members in candidate division MSBL1 and some Syntrophobacterales. The proteins are approximately 22...

[]

0

[ "PFAM" ]

[ "PF27374" ]

[ "AF_2141" ]

[ 27 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacteria", "Methanobacteriota", "marine sediment metagenome" ]

[ 4, 21, 2 ]

3

[]

0

true

Family

AF_2141 family

AF_2141

7

IPR059752

59,752

AF_0059 family

AF_0059

Family

25

false

This entry represents the AF_0059 family of uncharacterised proteins found exclusively in archaea. The family is found predominantly in Archaeoglobaceae, particularly Archaeoglobus, with additional members in candidate division MSBL1. The proteins are approximately 134 amino acids in length. The function of this protei...

[]

0

[ "PFAM" ]

[ "PF27352" ]

[ "AF_0059" ]

[ 25 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Methanobacteriota" ]

[ 25 ]

1

[]

0

true

Family

AF_0059 family

AF_0059

2

IPR059753

59,753

Bacteriophage T7 protein 0.5

Gp0_5

Family

24

false

This entry represents the bacteriophage T7 protein 0.5 (Gp0.5) family, a small membrane protein found in T7 and related phages. The protein is synthesised as a 47-amino-acid precursor with an N-terminal signal peptide (residues 1-23) that is cleaved to produce the mature 24-amino-acid protein. The mature protein contai...

[]

0

[ "PFAM" ]

[ "PF26813" ]

[ "Gp0_5" ]

[ 24 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes" ]

[ 24 ]

1

[]

0

true

Family

Bacteriophage T7 protein 0.5

Gp0_5

8

IPR059755

59,755

AF0772-like protein C-terminal domain

AF0772_C

Domain

21

false

This entry represents the C-terminal domain of AF0772-like proteins found in archaea. These proteins are found in the Archaeoglobi class, including Archaeoglobus, Geoglobus, and Ferroglobus species, as well as some methanogens. The function of this domain remains to be determined.

[]

0

[ "PFAM" ]

[ "PF27411" ]

[ "AF0772_C" ]

[ 21 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Methanobacteriota" ]

[ 21 ]

1

[]

0

true

Domain

AF0772-like protein C-terminal domain

AF0772_C

5

IPR059757

59,757

Aq_420-like protein

Aq_420

Family

19

false

This entry represents a family of small uncharacterised bacterial proteins. The prototype member aq_420 from Aquifex aeolicus strain VF5 is a 115 amino acid protein of unknown function. A. aeolicus is a hyperthermophilic bacterium that grows optimally at 85-95 degrees C, suggesting this protein family may be adapted to...

[]

0

[ "PFAM" ]

[ "PF27093" ]

[ "Aq_420" ]

[ 19 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Aquificales" ]

[ 19 ]

1

[]

0

true

Family

Aq_420-like protein

Aq_420

1

IPR059758

59,758

AF0631-like, N-terminal beta-barrel domain

AF0631_N

Domain

19

false

This entry represents the N-terminal domain of AF0631-like proteins found in archaea and bacteria. This domain forms a seven-stranded β-barrel structure of approximately 138 amino acids. The family is found predominantly in Archaeoglobi, including Archaeoglobus, Geoglobus, and Ferroglobus species, with additional membe...

[]

0

[ "PFAM" ]

[ "PF27425" ]

[ "AF0631_N" ]

[ 19 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea", "Breznakiellaceae" ]

[ 16, 3 ]

2

[]

0

true

Domain

AF0631-like, N-terminal beta-barrel domain

AF0631_N

2

IPR059759

59,759

Phage T7 protein 1.5

Phage_T7_1_5

Family

18

false

This entry represents protein 1.5 found in bacteriophages. The prototype is from bacteriophage T7, a small 29 amino acid protein with a molecular weight of 3.2 kDa. The protein is also known as gene product 1.5 (Gp1.5) and contains a hydrophobic N-terminal region suggesting potential membrane association. The function ...

[]

0

[ "PFAM" ]

[ "PF26858" ]

[ "Phage_T7_1_5" ]

[ 18 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes" ]

[ 18 ]

1

[]

0

true

Family

Phage T7 protein 1.5

Phage_T7_1_5

6

IPR059760

59,760

Mycobacterium phage L5 gene 74 protein

Phage_L5_Gp74

Family

18

false

This entry represents the gene 74 protein family found in L5-like mycobacteriophages. Gene 74 protein is an uncharacterised protein of 72 amino acids (8.5 kDa) found in Mycobacterium phage L5.

[]

0

[ "PFAM" ]

[ "PF26893" ]

[ "Phage_L5_Gp74" ]

[ 18 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Caudoviricetes" ]

[ 18 ]

1

[]

0

true

Family

Mycobacterium phage L5 gene 74 protein

Phage_L5_Gp74

9

IPR059761

59,761

AF_0970 family

AF_0970

Family

17

false

This entry represents the AF_0970 family of small membrane proteins found in sulfate-reducing archaea and bacteria. The family is found in Archaeoglobaceae, particularly Archaeoglobus, and various sulfate-reducing bacterial lineages including Desulfobacteraceae, Dethiobacteraceae, and Dethiobacter. The proteins are app...

[]

0

[ "PFAM" ]

[ "PF27382" ]

[ "AF_0970" ]

[ 17 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaeoglobaceae", "Bacteria" ]

[ 10, 7 ]

2

[]

0

true

Family

AF_0970 family

AF_0970

7

IPR059762

59,762

AF0631-like, C-terminal four-helix domain

AF0631_C

Domain

16

false

This entry represents the C-terminal domain of AF0631-like proteins found in archaea and bacteria. This domain is composed of four short α-helical segments. The family is found predominantly in Archaeoglobi, including Archaeoglobus, Geoglobus, and Ferroglobus species, with additional members in Spirochaetota. The speci...

[]

0

[ "PFAM" ]

[ "PF27426" ]

[ "AF0631_C" ]

[ 16 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Archaea" ]

[ 16 ]

1

[]

0

true

Domain

AF0631-like, C-terminal four-helix domain

AF0631_C

7

IPR059763

59,763

Staphylococcus phage L54a excisionase

Phage_L54a_excisionase

Family

16

false

This entry represents the excisionase family found in L54a-like bacteriophages. Excisionase is necessary, together with integrase, for the excision of prophage from the host genome by site-specific recombination at the att site [ ]. The protein is 59 amino acids (7.2 kDa) and functions as a DNA-binding protein involved...

[]

0

[ "PFAM" ]

[ "PF26912" ]

[ "Phage_L54a_excisionase" ]

[ 16 ]

1

[]

0

[]

0

[ "PUB00162230" ]

[ "2526804" ]

[ "Nucleotide sequence and genetic characterization of staphylococcal bacteriophage L54a int and xis genes." ]

[ 1989 ]

1

[]

0

null

[ "Bacillales", "Caudoviricetes" ]

[ 6, 10 ]

2

[]

0

true

Family

Staphylococcus phage L54a excisionase

Phage_L54a_excisionase

3

IPR059764

59,764

SPbeta prophage YomF protein, C-terminal domain

YomF_C

Domain

15

false

This entry represents the C-terminal domain of YomF. The function of this domain remains unknown. YomF is an uncharacterised protein encoded by the SPbeta prophage in Bacillus subtilis. This protein contains an N-terminal domain , middle domain and a C-terminal domain .

[]

0

[ "PFAM" ]

[ "PF27069" ]

[ "YomF_C" ]

[ 15 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillus", "Bacillus phage SPbeta" ]

[ 14, 1 ]

2

[]

0

true

Domain

SPbeta prophage YomF protein, C-terminal domain

YomF_C

9

IPR059766

59,766

SPbeta prophage protein YorO

Phage_YorO

Domain

10

false

This entry represents a family of small uncharacterised proteins derived from the SPbeta prophage. The prototype member YorO from Bacillus subtilis strain 168 is a 65 amino acid protein of unknown function. SPbeta is a temperate bacteriophage that integrates into the B. subtilis chromosome, and this protein is encoded ...

[]

0

[ "PFAM" ]

[ "PF27084" ]

[ "Phage_YorO" ]

[ 10 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Bacillus", "Bacillus phage SPbeta" ]

[ 9, 1 ]

2

[]

0

true

Domain

SPbeta prophage protein YorO

Phage_YorO

8

IPR059767

59,767

ShkE, N-terminal domain

ShkE_N

Domain

8

false

This entry represents the N-terminal domain in ShkE and related proteins mainly from Dictyostelium discoideum. ShkE is involved in essential cellular processes such as chemotaxis and phagocytosis. It plays a critical role in the regulation of F-actin levels within chemotaxing cells, ensuring proper spatiotemporal contr...

[]

0

[ "PFAM" ]

[ "PF26756" ]

[ "ShkE_N" ]

[ 8 ]

1

[]

0

[]

0

[ "PUB00084837", "PUB00085924" ]

[ "19926274", "10398925" ]

[ "SH2 domains: modulators of nonreceptor tyrosine kinase activity.", "SH2 domains: from structure to energetics, a dual approach to the study of structure-function relationships." ]

[ 2009, 1999 ]

2

[]

0

null

[ "Eukaryota" ]

[ 8 ]

1

[]

0

true

Domain

ShkE, N-terminal domain

ShkE_N

5

IPR059768

59,768

Uncharacterized killer plasmid pGKl-2 protein 1, N-terminal domain

YKP1_N

Domain

7

false

This entry represents the N-terminal domain of YKP1, an uncharacterised protein encoded by the killer plasmid pGKL2 from Kluyveromyces lactis. The presence of plasmids pGKL1 and pGKL2 confers the killer phenotype to the host cell by promoting secretion of a toxin that inhibits growth of sensitive strains [ ]. This prot...

[]

0

[ "PFAM" ]

[ "PF28450" ]

[ "YKP1_N" ]

[ 7 ]

1

[]

0

[]

0

[ "PUB00045923" ]

[ "3041369" ]

[ "Genome organization of the killer plasmid pGK12 from Kluyveromyces lactis." ]

[ 1988 ]

1

[]

0

null

[ "Saccharomycetaceae" ]

[ 7 ]

1

[]

0

true

Domain

Uncharacterized killer plasmid pGKl-2 protein 1, N-terminal domain

YKP1_N

4

IPR059769

59,769

Meiotically up-regulated gene 10 protein, PH domain

PH_MUG10

Domain

5

false

This entry represents a C-terminal PH-like domain found at the C terminus of the MUG10 protein. The Meiotically up-regulated gene 10 protein family is involved in the process of meiosis. Proteins in this family play a role in the complex series of events that lead to the formation of gametes, ensuring the proper segreg...

[]

0

[ "PFAM" ]

[ "PF26663" ]

[ "PH_MUG10" ]

[ 5 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Schizosaccharomyces" ]

[ 5 ]

1

[ "Schizosaccharomyces pombe (strain 972 / ATCC 24843)" ]

[ 1 ]

1

true

Domain

Meiotically up-regulated gene 10 protein, PH domain

PH_MUG10

7

IPR059770

59,770

Phage SPO1 gene 47 protein

Phage_SPO1_gp47

Family

5

false

This entry represents gene 47 protein found in bacteriophages. The prototype is from Bacillus phage SPO1, a 94 amino acid protein with a molecular weight of 10.5 kDa. The protein is located in the host-takeover module within the terminal redundancy region of the phage genome, suggesting a role in the early stages of in...

[]

0

[ "PFAM" ]

[ "PF26855" ]

[ "Phage_SPO1_gp47" ]

[ 5 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Okubovirus" ]

[ 5 ]

1

[]

0

true

Family

Phage SPO1 gene 47 protein

Phage_SPO1_gp47

5

IPR059771

59,771

Bacteriophage APSE-1 protein p4

Phage_APSE1_p4

Family

4

false

This entry represents protein p4 found in APSE-1-like bacteriophages. Protein p4 is an uncharacterised protein of 73 amino acids (9.0 kDa) found in bacteriophage APSE-1 that infects the secondary endosymbiont of Acyrthosiphon pisum.

[]

0

[ "PFAM" ]

[ "PF26913" ]

[ "Phage_APSE1_p4" ]

[ 4 ]

1

[]

0

[]

0

[]

0

[]

0

null

[ "Candidatus Williamhamiltonella defendens", "Sendosyvirus" ]

[ 2, 2 ]

2

[]

0

true

Family

Bacteriophage APSE-1 protein p4

Phage_APSE1_p4

7

IPR059772

59,772

Phage Cp-1 terminal protein

Phage_Cp-1_Terminal

Family

3

false

The Terminal protein family is crucial for DNA replication, as it is linked to the 5'-ends of both strands of the genome through a phosphodiester bond. This bond is formed between the beta-hydroxyl group of a threonine residue and the 5'-phosphate of the terminal deoxyadenylate [ ]. The family plays a significant role ...

[]

0

[ "PFAM" ]

[ "PF26850" ]

[ "Phage_Cp-1_Terminal" ]

[ 3 ]

1

[]

0

[]

0

[ "PUB00162227", "PUB00162228" ]

[ "3081736", "8757800" ]

[ "Formation of a covalent complex between the terminal protein of pneumococcal bacteriophage Cp-1 and 5'-dAMP.", "In vitro protein-primed initiation of pneumococcal phage Cp-1 DNA replication occurs at the third 3' nucleotide of the linear template: a stepwise sliding-back mechanism." ]

[ 1986, 1996 ]

2

[]

0

null

[ "Cepunavirus" ]

[ 3 ]

1

[]

0

true

Family

Phage Cp-1 terminal protein

Phage_Cp-1_Terminal

1

IPR059773

59,773

Phage decoration protein

Phage_decoration

Family

2

false

The Decoration protein family from Thermus phage p23-45 plays a crucial role in stabilizing the mature viral capsid shell. It achieves this by cooperatively binding to the expanded capsid, which allows for the packaging of large viral DNA [ ]. The proteins in this family form homotrimers and interact with the major cap...

[]

0

[ "PFAM" ]

[ "PF26852" ]

[ "Phage_decoration" ]

[ 2 ]

1

[]

0

[ "6bl5", "6i9e", "6o3h" ]

3

[ "PUB00095684" ]

[ "30737287" ]

[ "Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids." ]

[ 2019 ]

1

[]

0

null

[ "Oshimavirus" ]

[ 2 ]

1

[]

0

true

Family

Phage decoration protein

Phage_decoration

8