PMCID string | Sentences string | ner list |
|---|---|---|
PMC10777969 | Ovarian (A2780), breast (MCF-7), cervix (HeLa), colon (LoVo), and brain (MO59J and MO59K) cell lines were purchased from the American Type Culture Collection (ATCC; Rockville, MD, USA), except A2780 (Sigma-Aldrich, St. Louis, MO, USA). | [
{
"tags": [
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"B-CellLine",
"I-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Ovarian",
"(",
"A2780",
")",
",",
"breast",
"(",
"MCF-7",
")",
",",
"cervix",
"(",
"HeLa",
")",
",",
"colon",
"(",
"LoVo",
")",
",",
"and",
"brain",
"(",
"MO59J",
"and",
"MO59",
"K",
")",
"cell",
"lines",
"were",
"purchased",
"from",
"the",
"American",
"Type",
"Culture",
"Collection",
"(",
"ATCC",
";",
"Rockville",
",",
"MD",
",",
"USA",
")",
",",
"except",
"A2780",
"(",
"Sigma-Aldrich",
",",
"St.",
"Louis",
",",
"MO",
",",
"USA",
")",
"."
]
}
] |
PMC8708099 | The number of patients suffering from inflammation-associated intestinal disorders has increased dramatically in developed countries, and a variety of factors are known to influence this phenomenon . | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"number",
"of",
"patients",
"suffering",
"from",
"inflammation-associated",
"intestinal",
"disorders",
"has",
"increased",
"dramatically",
"in",
"developed",
"countries",
",",
"and",
"a",
"variety",
"of",
"factors",
"are",
"known",
"to",
"influence",
"this",
"phenomenon",
"."
]
}
] |
PMC11569208 | Cells were lysed 24 h later and RNA was extracted. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Cells",
"were",
"lysed",
"24",
"h",
"later",
"and",
"RNA",
"was",
"extracted",
"."
]
}
] |
PMC11656048 | And then washed twice with warm HBSS and harvested by trypsinization. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"And",
"then",
"washed",
"twice",
"with",
"warm",
"HBSS",
"and",
"harvested",
"by",
"trypsinization",
"."
]
}
] |
PMC9429973 | The proportional hazards assumption was evaluated graphically using log minus log plots. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"proportional",
"hazards",
"assumption",
"was",
"evaluated",
"graphically",
"using",
"log",
"minus",
"log",
"plots",
"."
]
}
] |
PMC10998613 | Like other chemokine receptors, CXCR4 can form homodimers (14), trimers (16), and higher-order complexes (17). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Like",
"other",
"chemokine",
"receptors",
",",
"CXCR4",
"can",
"form",
"homodimers",
"(",
"14",
")",
",",
"trimers",
"(",
"16",
")",
",",
"and",
"higher-order",
"complexes",
"(",
"17",
")",
"."
]
}
] |
PMC9429973 | The average adverse outcome occurrence among patients segmented by HbF ranges/thresholds were described in 40 analyses. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"average",
"adverse",
"outcome",
"occurrence",
"among",
"patients",
"segmented",
"by",
"HbF",
"ranges/thresholds",
"were",
"described",
"in",
"40",
"analyses",
"."
]
}
] |
PMC9429973 | The overall response rate (ORR) was 95.9% after 2 courses of induction therapy, with 13.5% achieving the deep response (complete response (CR) or better) and 51.3% of patients achieving a very good partial response (VGPR) or better. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"overall",
"response",
"rate",
"(",
"ORR",
")",
"was",
"95.9",
"%",
"after",
"2",
"courses",
"of",
"induction",
"therapy",
",",
"with",
"13.5",
"%",
"achieving",
"the",
"deep",
"response",
"(",
"complete",
"response",
"(",
"CR",
")",
"or",
"better",
")",
"and",
"51.3",
"%",
"of",
"patients",
"achieving",
"a",
"very",
"good",
"partial",
"response",
"(",
"VGPR",
")",
"or",
"better",
"."
]
}
] |
PMC11612626 | Digested samples were labeled with TMTpro (Thermo Fisher Scientific, Lot# YD368822). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Digested",
"samples",
"were",
"labeled",
"with",
"TMTpro",
"(",
"Thermo",
"Fisher",
"Scientific",
",",
"Lot",
"#",
"YD368822",
")",
"."
]
}
] |
PMC10568263 | Secondly, l-cysteine has an NH2 functional group that can interact with negatively charged [Fe(CN)6], thereby increasing electron diffusion. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Secondly",
",",
"l-cysteine",
"has",
"an",
"NH2",
"functional",
"group",
"that",
"can",
"interact",
"with",
"negatively",
"charged",
"[",
"Fe(CN)6",
"]",
",",
"thereby",
"increasing",
"electron",
"diffusion",
"."
]
}
] |
PMC11745600 | Nonfasting blood glucose levels (A and B) and weight changes with age (C and D) in male (wt, n = 5; C96Y/+, n = 12; and C96Y/C96Y, n = 5) and female (wt, n = 6; C96Y/+, n = 7; and C96Y/C96Y, n = 9) mice. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Nonfasting",
"blood",
"glucose",
"levels",
"(",
"A",
"and",
"B",
")",
"and",
"weight",
"changes",
"with",
"age",
"(",
"C",
"and",
"D",
")",
"in",
"male",
"(",
"wt",
",",
"n",
"=",
"5",
";",
"C96Y/+",
",",
"n",
"=",
"12",
";",
"and",
"C96Y/C96Y",
",",
"n",
"=",
"5",
")",
"and",
"female",
"(",
"wt",
",",
"n",
"=",
"6",
";",
"C96Y/+",
",",
"n",
"=",
"7",
";",
"and",
"C96Y/C96Y",
",",
"n",
"=",
"9",
")",
"mice",
"."
]
}
] |
PMC10965315 | p53 is a tumor suppressor gene that transcriptionally regulates multiple genes in different pathways and plays a momentous role in regulating cell division and preventing the formation of cancerous cells (Hernández Borrero & El‐Deiry, 2021). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"p53",
"is",
"a",
"tumor",
"suppressor",
"gene",
"that",
"transcriptionally",
"regulates",
"multiple",
"genes",
"in",
"different",
"pathways",
"and",
"plays",
"a",
"momentous",
"role",
"in",
"regulating",
"cell",
"division",
"and",
"preventing",
"the",
"formation",
"of",
"cancerous",
"cells",
"(",
"Hernández",
"Borrero",
"&",
"El‐Deiry",
",",
"2021",
")",
"."
]
}
] |
PMC4816271 | All constructs were generated by splicing by overlap PCR. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"All",
"constructs",
"were",
"generated",
"by",
"splicing",
"by",
"overlap",
"PCR",
"."
]
}
] |
PMC7305184 | We thus assumed these differences are most probably a result of experimental errors and can as such be considered random. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"We",
"thus",
"assumed",
"these",
"differences",
"are",
"most",
"probably",
"a",
"result",
"of",
"experimental",
"errors",
"and",
"can",
"as",
"such",
"be",
"considered",
"random",
"."
]
}
] |
PMC10547921 | This latter hydrogen bond network arranges the aromatic ring in Tyr β224 in a π-stacking interaction with the nucleobase of GDP, preventing its dissociation from β-tubulin. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"latter",
"hydrogen",
"bond",
"network",
"arranges",
"the",
"aromatic",
"ring",
"in",
"Tyr",
"β224",
"in",
"a",
"π-stacking",
"interaction",
"with",
"the",
"nucleobase",
"of",
"GDP",
",",
"preventing",
"its",
"dissociation",
"from",
"β-tubulin",
"."
]
}
] |
PMC11590870 | As for the latter, ROSs react with the genetic material of cells, inducing somatic mutations that, when accumulated, promote the appearance of malignant cells, which have been linked to the onset and development of several types of cancer. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"As",
"for",
"the",
"latter",
",",
"ROSs",
"react",
"with",
"the",
"genetic",
"material",
"of",
"cells",
",",
"inducing",
"somatic",
"mutations",
"that",
",",
"when",
"accumulated",
",",
"promote",
"the",
"appearance",
"of",
"malignant",
"cells",
",",
"which",
"have",
"been",
"linked",
"to",
"the",
"onset",
"and",
"development",
"of",
"several",
"types",
"of",
"cancer",
"."
]
}
] |
PMC9429973 | median (range); N (%) The probability of reaching consecutive treatment lines decreased in all age groups, but most strikingly in that of the oldest patients (Fig.). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"median",
"(",
"range",
")",
";",
"N",
"(",
"%",
")",
"The",
"probability",
"of",
"reaching",
"consecutive",
"treatment",
"lines",
"decreased",
"in",
"all",
"age",
"groups",
",",
"but",
"most",
"strikingly",
"in",
"that",
"of",
"the",
"oldest",
"patients",
"(",
"Fig.",
")",
"."
]
}
] |
PMC11499381 | To simplify the nomenclature, these epitope tags are omitted from the descriptions of the receptors. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"To",
"simplify",
"the",
"nomenclature",
",",
"these",
"epitope",
"tags",
"are",
"omitted",
"from",
"the",
"descriptions",
"of",
"the",
"receptors",
"."
]
}
] |
PMC11257203 | M. Evazalipour and E. Zamani contributed to the conceptualization, study design, project supervision, and manuscript writing. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"M.",
"Evazalipour",
"and",
"E.",
"Zamani",
"contributed",
"to",
"the",
"conceptualization",
",",
"study",
"design",
",",
"project",
"supervision",
",",
"and",
"manuscript",
"writing",
"."
]
}
] |
PMC11742231 | The molecular structures of the drugs were sourced from PubChem . ( | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"molecular",
"structures",
"of",
"the",
"drugs",
"were",
"sourced",
"from",
"PubChem",
".",
"("
]
}
] |
PMC11388384 | LiCor goat anti-mouse and goat anti-rabbit secondary antibodies were used to detect primary antibodies, and membranes were imaged using a Licor Odyssey Clx fluorescence scanner. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"LiCor",
"goat",
"anti-mouse",
"and",
"goat",
"anti-rabbit",
"secondary",
"antibodies",
"were",
"used",
"to",
"detect",
"primary",
"antibodies",
",",
"and",
"membranes",
"were",
"imaged",
"using",
"a",
"Licor",
"Odyssey",
"Clx",
"fluorescence",
"scanner",
"."
]
}
] |
PMC10391797 | Specific lysis effect of CD123 and CLL-1 CAR-T cells evaluated by flow when co-cultured with AML cell lines THP-1 and MV411 at an effector/target (E/T) ratio of 1:1. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Specific",
"lysis",
"effect",
"of",
"CD123",
"and",
"CLL-1",
"CAR-T",
"cells",
"evaluated",
"by",
"flow",
"when",
"co-cultured",
"with",
"AML",
"cell",
"lines",
"THP-1",
"and",
"MV411",
"at",
"an",
"effector/target",
"(",
"E/T",
")",
"ratio",
"of",
"1:1",
"."
]
}
] |
PMC10589262 | G Cell viability of GIST cells treated with 0.1 µM TG and PF was measured after 24 and 48 h. H Immunoprecipitation of GIST cell lysates was performed with a control IgG or KIT antibody, and western blotting was performed against chaperones. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"G",
"Cell",
"viability",
"of",
"GIST",
"cells",
"treated",
"with",
"0.1",
"µM",
"TG",
"and",
"PF",
"was",
"measured",
"after",
"24",
"and",
"48",
"h.",
"H",
"Immunoprecipitation",
"of",
"GIST",
"cell",
"lysates",
"was",
"performed",
"with",
"a",
"control",
"IgG",
"or",
"KIT",
"antibody",
",",
"and",
"western",
"blotting",
"was",
"performed",
"against",
"chaperones",
"."
]
}
] |
PMC11739484 | Panel (B) illustrates GEPIA2 based-based mRNA expression of MMP7, MMP11, and MMP14 genes in skin cutaneous melanoma (SKCM) samples of different cancer stages and control samples. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Panel",
"(",
"B",
")",
"illustrates",
"GEPIA2",
"based-based",
"mRNA",
"expression",
"of",
"MMP7",
",",
"MMP11",
",",
"and",
"MMP14",
"genes",
"in",
"skin",
"cutaneous",
"melanoma",
"(",
"SKCM",
")",
"samples",
"of",
"different",
"cancer",
"stages",
"and",
"control",
"samples",
"."
]
}
] |
PMC5311252 | This analysis revealed that the correlations found in the LUAD analysis were present also for other cancer types. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"analysis",
"revealed",
"that",
"the",
"correlations",
"found",
"in",
"the",
"LUAD",
"analysis",
"were",
"present",
"also",
"for",
"other",
"cancer",
"types",
"."
]
}
] |
PMC5600151 | Other modifications can impact cancer targeting properties, for instance, following conjugation with tumor specific antibodies and folic acid (Figure 2). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Other",
"modifications",
"can",
"impact",
"cancer",
"targeting",
"properties",
",",
"for",
"instance",
",",
"following",
"conjugation",
"with",
"tumor",
"specific",
"antibodies",
"and",
"folic",
"acid",
"(",
"Figure",
"2",
")",
"."
]
}
] |
PMC9429973 | Results: Trial in progress. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Results",
":",
"Trial",
"in",
"progress",
"."
]
}
] |
PMC11774747 | The reported studies suggest that enhancing the durability and expansion of CAR-VSTs, particularly through strategies like viral reactivation or vaccination, could improve therapeutic outcomes. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"reported",
"studies",
"suggest",
"that",
"enhancing",
"the",
"durability",
"and",
"expansion",
"of",
"CAR-VSTs",
",",
"particularly",
"through",
"strategies",
"like",
"viral",
"reactivation",
"or",
"vaccination",
",",
"could",
"improve",
"therapeutic",
"outcomes",
"."
]
}
] |
PMC11371627 | For an overview of clinical work-up of our patient, please see Supplementary Figure 1B. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"For",
"an",
"overview",
"of",
"clinical",
"work-up",
"of",
"our",
"patient",
",",
"please",
"see",
"Supplementary",
"Figure",
"1B",
"."
]
}
] |
PMC9412887 | In addition, they have shown delayed drug release or rapid drug release based on the crosslinker degradation in response to the tumor microenvironment (TME). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"addition",
",",
"they",
"have",
"shown",
"delayed",
"drug",
"release",
"or",
"rapid",
"drug",
"release",
"based",
"on",
"the",
"crosslinker",
"degradation",
"in",
"response",
"to",
"the",
"tumor",
"microenvironment",
"(",
"TME",
")",
"."
]
}
] |
PMC11621565 | At 1 µg/ml, levels were similar to the control. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"At",
"1",
"µg/ml",
",",
"levels",
"were",
"similar",
"to",
"the",
"control",
"."
]
}
] |
PMC10996034 | It was hypothesized that MMP1 may affect cell migration through ANGPTL4, leading to the generation of drug resistance. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"It",
"was",
"hypothesized",
"that",
"MMP1",
"may",
"affect",
"cell",
"migration",
"through",
"ANGPTL4",
",",
"leading",
"to",
"the",
"generation",
"of",
"drug",
"resistance",
"."
]
}
] |
PMC9436459 | In a branch procedure, precursors S25 and S26 were subjected to the same Horner-Wadsworth-Emmons reaction and deprotection conditions, and then reprotected with MOM groups to produce iodide S30, which performed the Heck reaction with 2-methyl-but-3-en-2-ol followed by dehydration to provide the desired MOM protected diene S31.Scheme 3Syntheses of dienes S28 and S31 by the Lei group Syntheses of dienes S28 and S31 by the Lei group The critical factor for the symmetric Diels − Alder cycloaddition between diene S28 and the known dienophile S32 was to find a suitable chiral ligand. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"a",
"branch",
"procedure",
",",
"precursors",
"S25",
"and",
"S26",
"were",
"subjected",
"to",
"the",
"same",
"Horner-Wadsworth-Emmons",
"reaction",
"and",
"deprotection",
"conditions",
",",
"and",
"then",
"reprotected",
"with",
"MOM",
"groups",
"to",
"produce",
"iodide",
"S30",
",",
"which",
"performed",
"the",
"Heck",
"reaction",
"with",
"2-methyl-but-3-en-2-ol",
"followed",
"by",
"dehydration",
"to",
"provide",
"the",
"desired",
"MOM",
"protected",
"diene",
"S31.Scheme",
"3Syntheses",
"of",
"dienes",
"S28",
"and",
"S31",
"by",
"the",
"Lei",
"group",
"Syntheses",
"of",
"dienes",
"S28",
"and",
"S31",
"by",
"the",
"Lei",
"group",
"The",
"critical",
"factor",
"for",
"the",
"symmetric",
"Diels",
"−",
"Alder",
"cycloaddition",
"between",
"diene",
"S28",
"and",
"the",
"known",
"dienophile",
"S32",
"was",
"to",
"find",
"a",
"suitable",
"chiral",
"ligand",
"."
]
}
] |
PMC11596967 | They were then incubated with 2 μM JC-1 dye for 15 min at 37 °C in an atmosphere containing 5% CO2, followed by two PBS washes. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"They",
"were",
"then",
"incubated",
"with",
"2",
"μM",
"JC-1",
"dye",
"for",
"15",
"min",
"at",
"37",
"°",
"C",
"in",
"an",
"atmosphere",
"containing",
"5",
"%",
"CO2",
",",
"followed",
"by",
"two",
"PBS",
"washes",
"."
]
}
] |
PMC11711063 | Comparison of ZG16B protein expression in lesion‐free mammary glands of MMVT‐ErbB2 transgenic mice after 8 weeks of vehicle or Bex + Carv treatments. ( | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Comparison",
"of",
"ZG16B",
"protein",
"expression",
"in",
"lesion‐free",
"mammary",
"glands",
"of",
"MMVT‐ErbB2",
"transgenic",
"mice",
"after",
"8",
"weeks",
"of",
"vehicle",
"or",
"Bex",
"+",
"Carv",
"treatments",
".",
"("
]
}
] |
PMC6889484 | As outlined by the dynamic copy choice model for retroviral recombination, duplicated gene sequences are precisely and accurately deleted at a high efficiency by homologous recombination during the process of reverse transcription.38, 39, 40, 41, 42, 43 Here, we developed a self-activating lentiviral vector that utilized directly repeated sequences of a Vif-resistant mutant of A3G (A3G-D128K) to prevent expression of A3G-D128K in the lentivector producer cells but reconstituted a functional A3G-D128K in the target cells during retroviral transduction. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"As",
"outlined",
"by",
"the",
"dynamic",
"copy",
"choice",
"model",
"for",
"retroviral",
"recombination",
",",
"duplicated",
"gene",
"sequences",
"are",
"precisely",
"and",
"accurately",
"deleted",
"at",
"a",
"high",
"efficiency",
"by",
"homologous",
"recombination",
"during",
"the",
"process",
"of",
"reverse",
"transcription.38",
",",
"39",
",",
"40",
",",
"41",
",",
"42",
",",
"43",
"Here",
",",
"we",
"developed",
"a",
"self-activating",
"lentiviral",
"vector",
"that",
"utilized",
"directly",
"repeated",
"sequences",
"of",
"a",
"Vif-resistant",
"mutant",
"of",
"A3",
"G",
"(",
"A3G-D128",
"K",
")",
"to",
"prevent",
"expression",
"of",
"A3G-D128",
"K",
"in",
"the",
"lentivector",
"producer",
"cells",
"but",
"reconstituted",
"a",
"functional",
"A3G-D128",
"K",
"in",
"the",
"target",
"cells",
"during",
"retroviral",
"transduction",
"."
]
}
] |
PMC5574817 | The hERG mRNA expression was determined by analyzing the threshold cycle (Ct) value for each RNA sample extracted from both transfected HEK293-HERG cells and non-transfected HEK293 cells (control). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"hERG",
"mRNA",
"expression",
"was",
"determined",
"by",
"analyzing",
"the",
"threshold",
"cycle",
"(",
"Ct",
")",
"value",
"for",
"each",
"RNA",
"sample",
"extracted",
"from",
"both",
"transfected",
"HEK293-HERG",
"cells",
"and",
"non-transfected",
"HEK293",
"cells",
"(",
"control",
")",
"."
]
}
] |
PMC11754784 | When using CD47 Nb to complete the binding between monoclonal antibody B6H12-PE and target cell, cells were first washed with DPBS three times and incubated with B6H12-PE at 4 °C for 30 min. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"When",
"using",
"CD47",
"Nb",
"to",
"complete",
"the",
"binding",
"between",
"monoclonal",
"antibody",
"B6H12-PE",
"and",
"target",
"cell",
",",
"cells",
"were",
"first",
"washed",
"with",
"DPBS",
"three",
"times",
"and",
"incubated",
"with",
"B6H12-PE",
"at",
"4",
"°",
"C",
"for",
"30",
"min",
"."
]
}
] |
PMC9429973 | We assessed red cell fragility parameters and eosine-5-maléimide (EMA), band 3 protein-binding dye, as an indicator of a membrane protein deficiency. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"We",
"assessed",
"red",
"cell",
"fragility",
"parameters",
"and",
"eosine-5-maléimide",
"(",
"EMA",
")",
",",
"band",
"3",
"protein-binding",
"dye",
",",
"as",
"an",
"indicator",
"of",
"a",
"membrane",
"protein",
"deficiency",
"."
]
}
] |
PMC11711127 | Fighting T cell exhaustion is at the core of current cancer immunotherapy efforts, with more than 5,000 ongoing clinical trials worldwide targeting PD-1/PD-L1 pathways, with a growing body of combination therapies; including chemotherapy agents, anti-angiogenic therapeutics or other immune modulators, such as anti-CTLA4, anti-LAG-3, or IL-2 variants (173). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Fighting",
"T",
"cell",
"exhaustion",
"is",
"at",
"the",
"core",
"of",
"current",
"cancer",
"immunotherapy",
"efforts",
",",
"with",
"more",
"than",
"5,000",
"ongoing",
"clinical",
"trials",
"worldwide",
"targeting",
"PD-1/PD-L1",
"pathways",
",",
"with",
"a",
"growing",
"body",
"of",
"combination",
"therapies",
";",
"including",
"chemotherapy",
"agents",
",",
"anti-angiogenic",
"therapeutics",
"or",
"other",
"immune",
"modulators",
",",
"such",
"as",
"anti-CTLA4",
",",
"anti-LAG-3",
",",
"or",
"IL-2",
"variants",
"(",
"173",
")",
"."
]
}
] |
PMC4369959 | The suppression of tumor growth was found to be linked with the inhibition of leukotriene A4 hydrolase activity, which was further confirmed by in silico approach . | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"suppression",
"of",
"tumor",
"growth",
"was",
"found",
"to",
"be",
"linked",
"with",
"the",
"inhibition",
"of",
"leukotriene",
"A4",
"hydrolase",
"activity",
",",
"which",
"was",
"further",
"confirmed",
"by",
"in",
"silico",
"approach",
"."
]
}
] |
PMC11438317 | HS1 and Vav were also dephosphorylated, although at a slower rate. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"HS1",
"and",
"Vav",
"were",
"also",
"dephosphorylated",
",",
"although",
"at",
"a",
"slower",
"rate",
"."
]
}
] |
PMC11623887 | GATA1 is one of the main transcription factors in the regulation of erythroid cells gene expression. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"GATA1",
"is",
"one",
"of",
"the",
"main",
"transcription",
"factors",
"in",
"the",
"regulation",
"of",
"erythroid",
"cells",
"gene",
"expression",
"."
]
}
] |
PMC9429973 | The ELSNCS has been recruiting consecutive infants diagnosed within a universal newborn screening programme since 1983. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"ELSNCS",
"has",
"been",
"recruiting",
"consecutive",
"infants",
"diagnosed",
"within",
"a",
"universal",
"newborn",
"screening",
"programme",
"since",
"1983",
"."
]
}
] |
PMC10976516 | This can raise the expression of adhesion molecules, stimulate leakiness within the tumor’s blood vessels, and cause the release of cytokines, which may facilitate the homing or extravasation of carrier cells from blood vessels into the tumor. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"can",
"raise",
"the",
"expression",
"of",
"adhesion",
"molecules",
",",
"stimulate",
"leakiness",
"within",
"the",
"tumor",
"’s",
"blood",
"vessels",
",",
"and",
"cause",
"the",
"release",
"of",
"cytokines",
",",
"which",
"may",
"facilitate",
"the",
"homing",
"or",
"extravasation",
"of",
"carrier",
"cells",
"from",
"blood",
"vessels",
"into",
"the",
"tumor",
"."
]
}
] |
PMC9429973 | Zanubrutinib (160 mg po bid) plus R-CHOP (ZR-CHOP) was administered in TN cohort, and Zanubrutinib (160 mg po bid) combined with investigator-determined conventional salvage chemotherapy (CSC, including ICE, DHAP, GDP, or GemOx, +/- rituximab) was administered in R/R cohort. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Zanubrutinib",
"(",
"160",
"mg",
"po",
"bid",
")",
"plus",
"R-CHOP",
"(",
"ZR-CHOP",
")",
"was",
"administered",
"in",
"TN",
"cohort",
",",
"and",
"Zanubrutinib",
"(",
"160",
"mg",
"po",
"bid",
")",
"combined",
"with",
"investigator-determined",
"conventional",
"salvage",
"chemotherapy",
"(",
"CSC",
",",
"including",
"ICE",
",",
"DHAP",
",",
"GDP",
",",
"or",
"GemOx",
",",
"+",
"/-",
"rituximab",
")",
"was",
"administered",
"in",
"R/R",
"cohort",
"."
]
}
] |
PMC11774747 | The source of these VSTs can be the allo-SCT donor or a different donor, known as a third-party donor, which can overcome issues associated with the lack of availability of an allogeneic HPC donor for the generation of donor-derived VSTs. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"source",
"of",
"these",
"VSTs",
"can",
"be",
"the",
"allo-SCT",
"donor",
"or",
"a",
"different",
"donor",
",",
"known",
"as",
"a",
"third-party",
"donor",
",",
"which",
"can",
"overcome",
"issues",
"associated",
"with",
"the",
"lack",
"of",
"availability",
"of",
"an",
"allogeneic",
"HPC",
"donor",
"for",
"the",
"generation",
"of",
"donor-derived",
"VSTs",
"."
]
}
] |
PMC9429973 | In the low probability group, overtesting for HIT is highly prevalent. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"the",
"low",
"probability",
"group",
",",
"overtesting",
"for",
"HIT",
"is",
"highly",
"prevalent",
"."
]
}
] |
PMC11389534 | Further research is necessary to establish if ODR4 also influences the activity of UFSP2, in addition to its known role in localisation and stability. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Further",
"research",
"is",
"necessary",
"to",
"establish",
"if",
"ODR4",
"also",
"influences",
"the",
"activity",
"of",
"UFSP2",
",",
"in",
"addition",
"to",
"its",
"known",
"role",
"in",
"localisation",
"and",
"stability",
"."
]
}
] |
PMC11506827 | Overall, these findings highlight the potential of GEF and TRAIL combination therapy to induce apoptosis by modulating apoptotic proteins involved in both extrinsic and intrinsic pathways. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Overall",
",",
"these",
"findings",
"highlight",
"the",
"potential",
"of",
"GEF",
"and",
"TRAIL",
"combination",
"therapy",
"to",
"induce",
"apoptosis",
"by",
"modulating",
"apoptotic",
"proteins",
"involved",
"in",
"both",
"extrinsic",
"and",
"intrinsic",
"pathways",
"."
]
}
] |
PMC11754436 | A-D) Identification of interaction correlation and survival analysis of target genes. ( | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"A-D",
")",
"Identification",
"of",
"interaction",
"correlation",
"and",
"survival",
"analysis",
"of",
"target",
"genes",
".",
"("
]
}
] |
PMC11472639 | Fig. 3 Representative gating strategy for NK-cells. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Fig.",
"3",
"Representative",
"gating",
"strategy",
"for",
"NK-cells",
"."
]
}
] |
PMC9545714 | The measurements were made on the left cheek on an area from the outer corner of the eye and on a plane with the small pointed eminence of the external ear (tragus). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"measurements",
"were",
"made",
"on",
"the",
"left",
"cheek",
"on",
"an",
"area",
"from",
"the",
"outer",
"corner",
"of",
"the",
"eye",
"and",
"on",
"a",
"plane",
"with",
"the",
"small",
"pointed",
"eminence",
"of",
"the",
"external",
"ear",
"(",
"tragus",
")",
"."
]
}
] |
PMC9545474 | The plates were further incubated for 72 h at 37 °C and a 5 % CO2 humidified atmosphere to allow for a period of recovery. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"plates",
"were",
"further",
"incubated",
"for",
"72",
"h",
"at",
"37",
"°",
"C",
"and",
"a",
"5",
"%",
"CO2",
"humidified",
"atmosphere",
"to",
"allow",
"for",
"a",
"period",
"of",
"recovery",
"."
]
}
] |
PMC11767582 | The regioselective formation of the 1,5-disubstituted triazoles was originally described by Sharpless and is explained by the mechanism illustrated in Scheme 1. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"regioselective",
"formation",
"of",
"the",
"1,5-disubstituted",
"triazoles",
"was",
"originally",
"described",
"by",
"Sharpless",
"and",
"is",
"explained",
"by",
"the",
"mechanism",
"illustrated",
"in",
"Scheme",
"1",
"."
]
}
] |
PMC11711871 | More clinical data are needed to determine whether adrenal hyperplasia is a prerequisite for developing hypertension . | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"More",
"clinical",
"data",
"are",
"needed",
"to",
"determine",
"whether",
"adrenal",
"hyperplasia",
"is",
"a",
"prerequisite",
"for",
"developing",
"hypertension",
"."
]
}
] |
PMC10565698 | The supernatant was aspirated and used as the nuclear RNA fraction. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"supernatant",
"was",
"aspirated",
"and",
"used",
"as",
"the",
"nuclear",
"RNA",
"fraction",
"."
]
}
] |
PMC11750161 | Therefore, we concluded that activating eel LH/CGR mutants exhibit continuous signaling without agonist stimulation. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Therefore",
",",
"we",
"concluded",
"that",
"activating",
"eel",
"LH/CGR",
"mutants",
"exhibit",
"continuous",
"signaling",
"without",
"agonist",
"stimulation",
"."
]
}
] |
PMC9429973 | This “late-start” strategy was thought to minimize toxicity risks of iron depletion from biological stores or iron-bound proteins, such as transferrin, observed during “early-start” studies with DFO. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"“",
"late-start",
"”",
"strategy",
"was",
"thought",
"to",
"minimize",
"toxicity",
"risks",
"of",
"iron",
"depletion",
"from",
"biological",
"stores",
"or",
"iron-bound",
"proteins",
",",
"such",
"as",
"transferrin",
",",
"observed",
"during",
"“",
"early-start",
"”",
"studies",
"with",
"DFO",
"."
]
}
] |
PMC9429973 | Goodness-of-fit was assessed using the Akaike Information Criterion and Bayesian Information Criterion. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Goodness-of-fit",
"was",
"assessed",
"using",
"the",
"Akaike",
"Information",
"Criterion",
"and",
"Bayesian",
"Information",
"Criterion",
"."
]
}
] |
PMC11092382 | Most of those studies were performed without sufficient mechanistic studies. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Most",
"of",
"those",
"studies",
"were",
"performed",
"without",
"sufficient",
"mechanistic",
"studies",
"."
]
}
] |
PMC11705862 | Error bars indicate SD To study the functional outcome of IRIS-1, and IRIS-2 expression in SH-SY5Y cells, we performed the knockdown of all the CD59 splice variants as no specific siRNAs are available that can distinguish between these three transcripts. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Error",
"bars",
"indicate",
"SD",
"To",
"study",
"the",
"functional",
"outcome",
"of",
"IRIS-1",
",",
"and",
"IRIS-2",
"expression",
"in",
"SH-SY5Y",
"cells",
",",
"we",
"performed",
"the",
"knockdown",
"of",
"all",
"the",
"CD59",
"splice",
"variants",
"as",
"no",
"specific",
"siRNAs",
"are",
"available",
"that",
"can",
"distinguish",
"between",
"these",
"three",
"transcripts",
"."
]
}
] |
PMC11218145 | Translating to mammalian cells, the impairment of ATP synthase largely affects mitochondrial structure and functions. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Translating",
"to",
"mammalian",
"cells",
",",
"the",
"impairment",
"of",
"ATP",
"synthase",
"largely",
"affects",
"mitochondrial",
"structure",
"and",
"functions",
"."
]
}
] |
PMC9429973 | In this study, CD3+ T cells from the CB samples were selected, activated, and modified by lentivirus to produce anti-BCMA CAR-T cells. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"this",
"study",
",",
"CD3",
"+",
"T",
"cells",
"from",
"the",
"CB",
"samples",
"were",
"selected",
",",
"activated",
",",
"and",
"modified",
"by",
"lentivirus",
"to",
"produce",
"anti-BCMA",
"CAR-T",
"cells",
"."
]
}
] |
PMC11155445 | Four novel analogs of 1-allyl-3-benzoylthiourea (100a–d) were synthesized and evaluated for their antibacterial activity against S. aureus, S. typhi, E. coli, and P. aeruginosa (Fig. 36). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Four",
"novel",
"analogs",
"of",
"1-allyl-3-benzoylthiourea",
"(",
"100a",
"–",
"d",
")",
"were",
"synthesized",
"and",
"evaluated",
"for",
"their",
"antibacterial",
"activity",
"against",
"S.",
"aureus",
",",
"S.",
"typhi",
",",
"E.",
"coli",
",",
"and",
"P.",
"aeruginosa",
"(",
"Fig.",
"36",
")",
"."
]
}
] |
PMC7812570 | A fusion gene sequentially encoding m36.4 or the scFv of FluIgG03, a His tag, and a GPI attachment signal (C-terminal 34 amino acid residues of DAF) was designed, synthesized (Genwiz, China) and then ligated into a self-inactivating lentiviral transfer vector carrying an hPGK promoter (pRRLsin. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"A",
"fusion",
"gene",
"sequentially",
"encoding",
"m36.4",
"or",
"the",
"scFv",
"of",
"FluIgG03",
",",
"a",
"His",
"tag",
",",
"and",
"a",
"GPI",
"attachment",
"signal",
"(",
"C-terminal",
"34",
"amino",
"acid",
"residues",
"of",
"DAF",
")",
"was",
"designed",
",",
"synthesized",
"(",
"Genwiz",
",",
"China",
")",
"and",
"then",
"ligated",
"into",
"a",
"self-inactivating",
"lentiviral",
"transfer",
"vector",
"carrying",
"an",
"hPGK",
"promoter",
"(",
"pRRLsin",
"."
]
}
] |
PMC9429973 | Some other SNPs (like rs35629860 and rs67128646) in the same LD block show the co-occurrence of H3K4me3 and H3K27me3 histone marks (associated with gene activation and repression, respectively) in promoters and enhancers in B lymphocytes. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Some",
"other",
"SNPs",
"(",
"like",
"rs35629860",
"and",
"rs67128646",
")",
"in",
"the",
"same",
"LD",
"block",
"show",
"the",
"co-occurrence",
"of",
"H3K4me3",
"and",
"H3K27me3",
"histone",
"marks",
"(",
"associated",
"with",
"gene",
"activation",
"and",
"repression",
",",
"respectively",
")",
"in",
"promoters",
"and",
"enhancers",
"in",
"B",
"lymphocytes",
"."
]
}
] |
PMC9429973 | Results: A subgroup of 58 JAKARTA2 patients with an Eastern Cooperative Oncology Group performance status (ECOG PS) score of 0 or 1 and intermediate-2 or high-risk disease most closely aligned with the REFINE population (N=34) was used in the analyses. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Results",
":",
"A",
"subgroup",
"of",
"58",
"JAKARTA2",
"patients",
"with",
"an",
"Eastern",
"Cooperative",
"Oncology",
"Group",
"performance",
"status",
"(",
"ECOG",
"PS",
")",
"score",
"of",
"0",
"or",
"1",
"and",
"intermediate-2",
"or",
"high-risk",
"disease",
"most",
"closely",
"aligned",
"with",
"the",
"REFINE",
"population",
"(",
"N=34",
")",
"was",
"used",
"in",
"the",
"analyses",
"."
]
}
] |
PMC11648299 | One strength of our investigation is the analysis of retinoid use which is common in this patient group. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"One",
"strength",
"of",
"our",
"investigation",
"is",
"the",
"analysis",
"of",
"retinoid",
"use",
"which",
"is",
"common",
"in",
"this",
"patient",
"group",
"."
]
}
] |
PMC11291490 | DuPBMCs were isolated as mentioned above. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"DuPBMCs",
"were",
"isolated",
"as",
"mentioned",
"above",
"."
]
}
] |
PMC11348300 | PpIX has a red DF emission (Fig. 2E) that has not been widely acknowledged prior to now but is significantly amplified by the lack of oxygen around it (16, 40) (Fig. 2F), such as the microregional hypoxia present in most solid cancers (41–45). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"PpIX",
"has",
"a",
"red",
"DF",
"emission",
"(",
"Fig.",
"2E",
")",
"that",
"has",
"not",
"been",
"widely",
"acknowledged",
"prior",
"to",
"now",
"but",
"is",
"significantly",
"amplified",
"by",
"the",
"lack",
"of",
"oxygen",
"around",
"it",
"(",
"16",
",",
"40",
")",
"(",
"Fig.",
"2F",
")",
",",
"such",
"as",
"the",
"microregional",
"hypoxia",
"present",
"in",
"most",
"solid",
"cancers",
"(",
"41–45",
")",
"."
]
}
] |
PMC11701801 | P < 0.05; **, P < 0.01; ***, P < 0.001. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"P",
"<",
"0.05",
";",
"*",
"*",
",",
"P",
"<",
"0.01",
";",
"*",
"*",
"*",
",",
"P",
"<",
"0.001",
"."
]
}
] |
PMC10940855 | Multiple myeloma cells (U266, NCI-H929, RPMI-8226) were purchased from ATCC and cultured in RPMI1640 medium containing 25 mmol/L HEPES, l-Glutamine (Thermo Fisher Scientific, 11875093) and 15% FBS. | [
{
"tags": [
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"B-CellLine",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Multiple",
"myeloma",
"cells",
"(",
"U266",
",",
"NCI-H929",
",",
"RPMI-8226",
")",
"were",
"purchased",
"from",
"ATCC",
"and",
"cultured",
"in",
"RPMI1640",
"medium",
"containing",
"25",
"mmol/L",
"HEPES",
",",
"l-Glutamine",
"(",
"Thermo",
"Fisher",
"Scientific",
",",
"11875093",
")",
"and",
"15",
"%",
"FBS",
"."
]
}
] |
PMC10898159 | LMTK3 knockdown not only directly decreases KIT protein translation, but also inhibit the expression of PKC and KIT phosphorylation, indicating LMTK3 as a druggable target. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"LMTK3",
"knockdown",
"not",
"only",
"directly",
"decreases",
"KIT",
"protein",
"translation",
",",
"but",
"also",
"inhibit",
"the",
"expression",
"of",
"PKC",
"and",
"KIT",
"phosphorylation",
",",
"indicating",
"LMTK3",
"as",
"a",
"druggable",
"target",
"."
]
}
] |
PMC7057940 | no. 7477-40-7; Sigma-Aldrich; Merck KGaA) followed by fixation with 3:1 methanol (cat. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"no.",
"7477",
"-",
"40",
"-",
"7",
";",
"Sigma-Aldrich",
";",
"Merck",
"KGaA",
")",
"followed",
"by",
"fixation",
"with",
"3:1",
"methanol",
"(",
"cat",
"."
]
}
] |
PMC11721064 | Images showed that during the purification process, circular cells gradually disappeared, and dormant fibroblasts mainly aggregated in P2 LNCs (scale bar = 50 μm). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Images",
"showed",
"that",
"during",
"the",
"purification",
"process",
",",
"circular",
"cells",
"gradually",
"disappeared",
",",
"and",
"dormant",
"fibroblasts",
"mainly",
"aggregated",
"in",
"P2",
"LNCs",
"(",
"scale",
"bar",
"=",
"50",
"μm",
")",
"."
]
}
] |
PMC11509278 | The proportions of the level 1 classification of differentially abundant metabolites of A431 cells treated with EEP in positive ion mode were as follows: metabolism, 68.57%; organismal systems, 13.33%; human diseases, 8.57%; environmental information processing, 4.76%; cellular processes, 2.86%; and genetic information processing, 1.90% (Figure 4A). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"proportions",
"of",
"the",
"level",
"1",
"classification",
"of",
"differentially",
"abundant",
"metabolites",
"of",
"A431",
"cells",
"treated",
"with",
"EEP",
"in",
"positive",
"ion",
"mode",
"were",
"as",
"follows",
":",
"metabolism",
",",
"68.57",
"%",
";",
"organismal",
"systems",
",",
"13.33",
"%",
";",
"human",
"diseases",
",",
"8.57",
"%",
";",
"environmental",
"information",
"processing",
",",
"4.76",
"%",
";",
"cellular",
"processes",
",",
"2.86",
"%",
";",
"and",
"genetic",
"information",
"processing",
",",
"1.90",
"%",
"(",
"Figure",
"4A",
")",
"."
]
}
] |
PMC11650848 | The placebo G/G group symbol search and cancellation scores diverge away from the other groups. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"placebo",
"G/G",
"group",
"symbol",
"search",
"and",
"cancellation",
"scores",
"diverge",
"away",
"from",
"the",
"other",
"groups",
"."
]
}
] |
PMC11661024 | Therefore, these results confirmed the release of cytochrome c after activation of the mitochondrial pathway by the downregulation of RelA and iKB genes, along with elevating the expression of Bax/Bcl2, thus consequently enhancing apoptosis. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Therefore",
",",
"these",
"results",
"confirmed",
"the",
"release",
"of",
"cytochrome",
"c",
"after",
"activation",
"of",
"the",
"mitochondrial",
"pathway",
"by",
"the",
"downregulation",
"of",
"RelA",
"and",
"iKB",
"genes",
",",
"along",
"with",
"elevating",
"the",
"expression",
"of",
"Bax/Bcl2",
",",
"thus",
"consequently",
"enhancing",
"apoptosis",
"."
]
}
] |
PMC11206502 | Significant differences between basal and stressed OCR values, tested by the Mann–Whitney test, were registered only for the positive control (p = 0.0002), with a decrease in the OCR values in a stressed state. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Significant",
"differences",
"between",
"basal",
"and",
"stressed",
"OCR",
"values",
",",
"tested",
"by",
"the",
"Mann",
"–",
"Whitney",
"test",
",",
"were",
"registered",
"only",
"for",
"the",
"positive",
"control",
"(",
"p",
"=",
"0.0002",
")",
",",
"with",
"a",
"decrease",
"in",
"the",
"OCR",
"values",
"in",
"a",
"stressed",
"state",
"."
]
}
] |
PMC10858941 | By performing immunofluorescence in our GBM-on-a-Chip model, we could observe a clear accumulation of p62 in the outermost areas of the tumour after NNC application compared to untreated chips from both GBM cell lines. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"By",
"performing",
"immunofluorescence",
"in",
"our",
"GBM-on-a-Chip",
"model",
",",
"we",
"could",
"observe",
"a",
"clear",
"accumulation",
"of",
"p62",
"in",
"the",
"outermost",
"areas",
"of",
"the",
"tumour",
"after",
"NNC",
"application",
"compared",
"to",
"untreated",
"chips",
"from",
"both",
"GBM",
"cell",
"lines",
"."
]
}
] |
PMC9429973 | OS did not differ between patients experiencing AF or not. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"OS",
"did",
"not",
"differ",
"between",
"patients",
"experiencing",
"AF",
"or",
"not",
"."
]
}
] |
PMC4270159 | M14VarianceF (2, 6)ηPEffect size fPowerTotal sample size across all groups2%12500.99760620.413599.99%615%22.22220.8810572.72165290.90%628%6.37760.6800891.45803685.39%940%3.1250.5102041.02062188.33%15KHM-S3VarianceF (2, 6)ηPEffect size fPowerTotal sample size across all groups2%6890.82120.99956547.935999.99%615%122.50350.9760966.39014999.99%628%35.15730.9213783.42331598.12%640%17.22710.8516842.39632283.59%6 In order to produce quantitative replication data, we will run the experiment three times. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"M14VarianceF",
"(",
"2",
",",
"6)ηPEffect",
"size",
"fPowerTotal",
"sample",
"size",
"across",
"all",
"groups2%12500.99760620.413599.99%615%22.22220.8810572.72165290.90%628%6.37760.6800891.45803685.39%940%3.1250.5102041.02062188.33%15KHM-S3VarianceF",
"(",
"2",
",",
"6)ηPEffect",
"size",
"fPowerTotal",
"sample",
"size",
"across",
"all",
"groups2%6890.82120.99956547.935999.99%615%122.50350.9760966.39014999.99%628%35.15730.9213783.42331598.12%640%17.22710.8516842.39632283.59%6",
"In",
"order",
"to",
"produce",
"quantitative",
"replication",
"data",
",",
"we",
"will",
"run",
"the",
"experiment",
"three",
"times",
"."
]
}
] |
PMC11779960 | In this light, the 5% threshold adopted by Thiele et al. is likely too low and even the arbitrary 25% threshold proposed by Iyer et al. may not exclude infiltrating normal T cells. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"this",
"light",
",",
"the",
"5",
"%",
"threshold",
"adopted",
"by",
"Thiele",
"et",
"al.",
"is",
"likely",
"too",
"low",
"and",
"even",
"the",
"arbitrary",
"25",
"%",
"threshold",
"proposed",
"by",
"Iyer",
"et",
"al.",
"may",
"not",
"exclude",
"infiltrating",
"normal",
"T",
"cells",
"."
]
}
] |
PMC11680982 | Further analysis by flow cytometry and western blot unveiled the ability of neratinib to induce G1 phase arrest, accompanied by downregulation of Cyclin D1, CDK4, HER2, and EGFR (P < 0.05) (Fig. 4C,D). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Further",
"analysis",
"by",
"flow",
"cytometry",
"and",
"western",
"blot",
"unveiled",
"the",
"ability",
"of",
"neratinib",
"to",
"induce",
"G1",
"phase",
"arrest",
",",
"accompanied",
"by",
"downregulation",
"of",
"Cyclin",
"D1",
",",
"CDK4",
",",
"HER2",
",",
"and",
"EGFR",
"(",
"P",
"<",
"0.05",
")",
"(",
"Fig.",
"4C",
",",
"D",
")",
"."
]
}
] |
PMC11012313 | Our current information suggests that an mTOR-dependent enhancement of ATP production and HIF-1α levels may contribute to this LMP2A-dependent enhancement in MYC-driven tumor development and potentially the need to bypass additional oncogenic mutations. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Our",
"current",
"information",
"suggests",
"that",
"an",
"mTOR-dependent",
"enhancement",
"of",
"ATP",
"production",
"and",
"HIF-1α",
"levels",
"may",
"contribute",
"to",
"this",
"LMP2A-dependent",
"enhancement",
"in",
"MYC-driven",
"tumor",
"development",
"and",
"potentially",
"the",
"need",
"to",
"bypass",
"additional",
"oncogenic",
"mutations",
"."
]
}
] |
PMC7612475 | Following treatment and appropriate recovery as indicated, cells were fixed in 4% PFA/PBS and then permeabilized in 0.4% Triton X-100/PBS followed by blocking in 3% BSA/PBS. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Following",
"treatment",
"and",
"appropriate",
"recovery",
"as",
"indicated",
",",
"cells",
"were",
"fixed",
"in",
"4",
"%",
"PFA/PBS",
"and",
"then",
"permeabilized",
"in",
"0.4",
"%",
"Triton",
"X-100/PBS",
"followed",
"by",
"blocking",
"in",
"3",
"%",
"BSA/PBS",
"."
]
}
] |
PMC9351137 | After washing in PBS, the coverslips were counterstained with DAPI and mounted onto slides with ProLong™ Diamond Antifade Mountant (Invitrogen). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"After",
"washing",
"in",
"PBS",
",",
"the",
"coverslips",
"were",
"counterstained",
"with",
"DAPI",
"and",
"mounted",
"onto",
"slides",
"with",
"ProLong",
"™",
"Diamond",
"Antifade",
"Mountant",
"(",
"Invitrogen",
")",
"."
]
}
] |
PMC10849234 | HL-60 or PLB-985 cells were differentiated into Neutrophil-like cells (NLCs) and tested for exocytosis of primary granules. ( | [
{
"tags": [
"B-CellLine",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"HL-60",
"or",
"PLB-985",
"cells",
"were",
"differentiated",
"into",
"Neutrophil-like",
"cells",
"(",
"NLCs",
")",
"and",
"tested",
"for",
"exocytosis",
"of",
"primary",
"granules",
".",
"("
]
}
] |
PMC10006224 | units, arbitrary units) of control or NIPBL KD HeLa cells stained with antibodies against STAG1, STAG2 and SMC1A. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"units",
",",
"arbitrary",
"units",
")",
"of",
"control",
"or",
"NIPBL",
"KD",
"HeLa",
"cells",
"stained",
"with",
"antibodies",
"against",
"STAG1",
",",
"STAG2",
"and",
"SMC1A",
"."
]
}
] |
PMC9429973 | Aims: As cross-sectional studies failed to identify unifying determinants of relapse, we adopted a longitudinal strategy and performed multi-omic analyses in 13 matched pairs of initial diagnosis and relapse samples and their matched PDXs. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Aims",
":",
"As",
"cross-sectional",
"studies",
"failed",
"to",
"identify",
"unifying",
"determinants",
"of",
"relapse",
",",
"we",
"adopted",
"a",
"longitudinal",
"strategy",
"and",
"performed",
"multi-omic",
"analyses",
"in",
"13",
"matched",
"pairs",
"of",
"initial",
"diagnosis",
"and",
"relapse",
"samples",
"and",
"their",
"matched",
"PDXs",
"."
]
}
] |
PMC9429973 | Subgroup analysis stratifying COVID-19 patients by age (≥50 years old), COVID-19 mRNA vaccination before acquiring SARS-CoV-2 infection, or pre-existing cardiovascular risk factors did not show any statistically significant differences across haemostatic, endothelial or inflammatory parameters. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Subgroup",
"analysis",
"stratifying",
"COVID-19",
"patients",
"by",
"age",
"(",
"≥50",
"years",
"old",
")",
",",
"COVID-19",
"mRNA",
"vaccination",
"before",
"acquiring",
"SARS-CoV-2",
"infection",
",",
"or",
"pre-existing",
"cardiovascular",
"risk",
"factors",
"did",
"not",
"show",
"any",
"statistically",
"significant",
"differences",
"across",
"haemostatic",
",",
"endothelial",
"or",
"inflammatory",
"parameters",
"."
]
}
] |
PMC9429973 | Figure1 H-I) Image: Summary/Conclusion: Paeoniflorin could significantly reduce peripheral neuropathy caused by bortezomib, which might be achieved by reducing IL6 levels to regulate PARKIN-mediated mitochondrial autophagy and mitochondrial damage. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Figure1",
"H-I",
")",
"Image",
":",
"Summary/Conclusion",
":",
"Paeoniflorin",
"could",
"significantly",
"reduce",
"peripheral",
"neuropathy",
"caused",
"by",
"bortezomib",
",",
"which",
"might",
"be",
"achieved",
"by",
"reducing",
"IL6",
"levels",
"to",
"regulate",
"PARKIN-mediated",
"mitochondrial",
"autophagy",
"and",
"mitochondrial",
"damage",
"."
]
}
] |
PMC11489351 | The lactate assay kit (Sigma, MAK066) is a colorimetric assay that measures lactate concentration (0.2–10 nmoles of lactate) in a biological sample and is determined by an enzymatic assay leading to a readout that is proportional to the lactate present in the sample. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"lactate",
"assay",
"kit",
"(",
"Sigma",
",",
"MAK066",
")",
"is",
"a",
"colorimetric",
"assay",
"that",
"measures",
"lactate",
"concentration",
"(",
"0.2–10",
"nmoles",
"of",
"lactate",
")",
"in",
"a",
"biological",
"sample",
"and",
"is",
"determined",
"by",
"an",
"enzymatic",
"assay",
"leading",
"to",
"a",
"readout",
"that",
"is",
"proportional",
"to",
"the",
"lactate",
"present",
"in",
"the",
"sample",
"."
]
}
] |
PMC11349530 | It is crucial for the tumorigenic capacity of tumor-initiating cells (TICs), also known as cancer stem cells, which drive cancer progression and resistant to treatment (64, 65). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"It",
"is",
"crucial",
"for",
"the",
"tumorigenic",
"capacity",
"of",
"tumor-initiating",
"cells",
"(",
"TICs",
")",
",",
"also",
"known",
"as",
"cancer",
"stem",
"cells",
",",
"which",
"drive",
"cancer",
"progression",
"and",
"resistant",
"to",
"treatment",
"(",
"64",
",",
"65",
")",
"."
]
}
] |
PMC11566417 | For neutrophil reactive oxygen species (ROS) assays, 1 × 10 neutrophils in 100 µL of RPMI isolated from 3 different cows were aliquoted across 4 mL flow cytometry tubes. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"For",
"neutrophil",
"reactive",
"oxygen",
"species",
"(",
"ROS",
")",
"assays",
",",
"1",
"×",
"10",
"neutrophils",
"in",
"100",
"µL",
"of",
"RPMI",
"isolated",
"from",
"3",
"different",
"cows",
"were",
"aliquoted",
"across",
"4",
"mL",
"flow",
"cytometry",
"tubes",
"."
]
}
] |
PMC9243326 | 2013; Roberts et al., 2013; Lin et al., 2017; Ardui et al., 2018; Li et al., 2018; Chen S. et al., 2019; Yang et al., 2020). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"2013",
";",
"Roberts",
"et",
"al.",
",",
"2013",
";",
"Lin",
"et",
"al.",
",",
"2017",
";",
"Ardui",
"et",
"al.",
",",
"2018",
";",
"Li",
"et",
"al.",
",",
"2018",
";",
"Chen",
"S.",
"et",
"al.",
",",
"2019",
";",
"Yang",
"et",
"al.",
",",
"2020",
")",
"."
]
}
] |
PMC8735881 | Similarly, the transduced cells were inoculated with three CXCR4-tropic (NL4-3, SG3.1, and LAI.2) and three CCR5-tropic (RHPA.c/2635, TRJO.c/2851, and MJ4) viruses, and infections were monitored over time by detecting intracellular HIV-1 p24 antigen and GFP expression. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Similarly",
",",
"the",
"transduced",
"cells",
"were",
"inoculated",
"with",
"three",
"CXCR4-tropic",
"(",
"NL4",
"-",
"3",
",",
"SG3.1",
",",
"and",
"LAI.2",
")",
"and",
"three",
"CCR5-tropic",
"(",
"RHPA.c/2635",
",",
"TRJO.c/2851",
",",
"and",
"MJ4",
")",
"viruses",
",",
"and",
"infections",
"were",
"monitored",
"over",
"time",
"by",
"detecting",
"intracellular",
"HIV-1",
"p24",
"antigen",
"and",
"GFP",
"expression",
"."
]
}
] |
PMC11337594 | Cells were treated with different doses of TER for 48 h, treated cells were digested and prepared into cell suspension and adjusted to the same concentration. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Cells",
"were",
"treated",
"with",
"different",
"doses",
"of",
"TER",
"for",
"48",
"h",
",",
"treated",
"cells",
"were",
"digested",
"and",
"prepared",
"into",
"cell",
"suspension",
"and",
"adjusted",
"to",
"the",
"same",
"concentration",
"."
]
}
] |
PMC9429973 | In this context, alloreactive NK cells have been correlated with a lower relapse rate, decreasing GvHD with maintenance of beneficial graft-versus-leukaemia (GvL) effect. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"In",
"this",
"context",
",",
"alloreactive",
"NK",
"cells",
"have",
"been",
"correlated",
"with",
"a",
"lower",
"relapse",
"rate",
",",
"decreasing",
"GvHD",
"with",
"maintenance",
"of",
"beneficial",
"graft-versus-leukaemia",
"(",
"GvL",
")",
"effect",
"."
]
}
] |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.