PMCID string | Sentences string | ner list |
|---|---|---|
PMC10669966 | Altogether, we identified 97 DEGs between the DDLPS subtype and the other two subtypes, 247 DEGs between the MLPS subtype and the other two subtypes, and 37 DEGs between the PLPS subtype and the other two subtypes, after using the IST-derived exclusion lists (see above). | [
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PMC11768927 | VSV was one of the first viruses to be manipulated using reverse genetics, allowing the construction of recombinant VSV (rVSV) through targeted genome modifications . | [
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PMC11725127 | Unfortunately, they have poor selectivity against USP2 because the catalytic domain is conserved among most USPs. | [
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PMC9429973 | Except for the T315I clone (B8, Table 1), other analysed clones expressed MCL-1 after exposure to BH3-mimetics. | [
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PMC11422497 | Therefore, in our future work, further studies with larger groups of patients, the improvement of the circ_SMA4-miRNA-mRNA regulatory network, and further validation in vivo and in vitro also need to be explored. | [
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PMC11759543 | The protein concentration was determined using the bicinchoninic acid assay (Thermo scientific, USA). | [
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PMC11720808 | Macroscopic image showing the collected tumor specimens after the mice were sacrificed. ( | [
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PMC3730428 | Consistent with FLIP downregulation being necessary for SAHA treatment to promote AT-IAP/TNFα-induced cell death, overexpression of either FLIP(S) or FLIP(L) blocked the effects of SAHA and AT-IAP/TNFα cotreatment on cell death (Figure 7b). | [
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PMC10142392 | In addition, the relatively low melting temperatures of around 60 °C make PCL materials easy to manufacture or transform into highly structured forms . | [
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PMC11476106 | We have modulated its stiffness to study a specific element of the tumor ECM, VN, opening the possibility of its use to study other proteins of interest and other tumor types. | [
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PMC11407042 | Check the cell distribution under the inverted microscope.h. | [
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PMC9429973 | Results: A 42 years-old male patient presented with B symptoms that lasted for 3 months. | [
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PMC9429973 | Mean PoS decreased, and p50, 2,3-DPG level and ATP/2,3-DPG ratio significantly improved. | [
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PMC11055443 | Mesenchymal stem cell culture, secretome isolation, and characterization. | [
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PMC10968586 | After ingestion, HT is more largely absorbed in the intestine by diffusion, is mainly metabolized into glucuronide and sulphate conjugates, and is excreted in urine mostly in its glucuronide conjugated form . | [
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PMC11656380 | Cell viability of 100% was calculated by adding Hank’s balanced salt solution (HBBS) as a control. | [
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PMC11653533 | Peiwu Geng: Writing – review & editing, Visualization, Software, Resources, Methodology, Investigation, Formal analysis, Data curation, Conceptualization. | [
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PMC10204952 | The cells were cultured for 24 h for attachment before being treated with S1P for 48 h before staining. | [
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PMC11531744 | Cross-validation for optimizing the parameter in LASSO regression. ( | [
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PMC11803149 | The violin plot shows Epas1 expression in young and aged OT-I TCR-T cells. ( | [
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PMC6684588 | For FST315-Fc, the SP Sepharose step was replaced by a preparative size-exclusion column, and the final material was dialyzed in phosphate-buffered saline. | [
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PMC9429973 | We used RT-PCR followed by direct sequencing to detect fusion genes. | [
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PMC9429973 | T-Charge™ is a novel platform that retains the naive/Tscm immunophenotype of the input leukapheresis and reduces the manufacturing process time to <2 days. | [
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PMC5417661 | The IC50 concentrations of NOV202 were assessed in a panel of eight cancer cell lines. | [
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PMC11770199 | Heatmap showed up-regulated apoptosis and pyroptosis-related genes. ( | [
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PMC11782508 | cDNA synthesis was then performed using the ABT H-Minus cDNA Synthesis Kit (Applied Biotechnology, Egypt). | [
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PMC11395280 | The TEER measurements made of our HBEC-5i monolayers, averaging 27.6 Ω × cm were characteristic of an intact monolayer, as were the presence of zonule occludins within the cell junctions (Figure 3). | [
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PMC11344246 | Furthermore, we only knocked down five of the top targets. | [
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PMC11588008 | Previous literature shows that CTX and its metabolite phosphoramide mustard (PM) (Yuanye Shengwu, China) can cause cell damage. | [
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PMC10849234 | For each panel, the data are averages of three independent experiments performed in triplicate. | [
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PMC11592837 | Following this argument, it seems unlikely to us because incubation with 1 µM DOX, but not with 25 µM ETP, caused peak phosphorylation of H2AX in dose dependent experiments. | [
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PMC9429973 | A subset of patients happened to high-grade transformation (HT) to the more aggressive diffuse large B cell lymphoma (DLBCL), associated with inferior clinical outcomes. | [
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PMC10565698 | RNA immunoprecipitation and dual-luciferase reporter assays were performed to study the mechanistic relationship between circUSP10, miR-211-5p, and transcription factor 12 (TCF12). | [
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PMC10568263 | The size of the nanoflowers increased to 250–270 nm due to the addition of PVP surfactant, while the size of the Au NPs was approximately 15–20 nm. | [
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PMC11545868 | The basic structure of flavonoids, which are double polyphenolic compounds, consists of 15 carbons, two aromatic rings, and one pyran ring, and flavonoids are classified into various subgroups based on changes in the carbon structure of each ring and the degree of oxidation or unsaturation, including flavone, flavonol, isoflavone, anthocyanidin, flavanone, and flavan-3-ol (Figure 2) . | [
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PMC10748106 | In Table 9, the descriptors of these ten designed ligands are presented. | [
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PMC5574817 | Standard curve plots for amplification efficiency of hERG and β-actin. | [
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PMC11536589 | Representative images were shown here and other images were represented in Supplementary Fig. 5D. ( | [
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PMC10719213 | DNA was extracted using QIAamp DNA Mini Kit (Qiagen). | [
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PMC11552389 | The impact of FOXN3 on drug IC50 values. ( | [
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PMC11200978 | A single 5 min freeze to −10 °C or −15 °C yielded minimal cell death at 24 h post freeze (−10 °C: 164.5% (±1.2) and −15 °C: 96.4% (±2.8), versus control 137.9% (±0.8), respectively). | [
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PMC7351993 | It is important to note that the RIACS can accept any image feature such as perimeter, circularity, and chemical localization as long as the total signal processing time fits within the sort latency. | [
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PMC10899471 | In this study, we demonstrated that the expression of BATF2 was downregulated in human sarcoma tissues and cell lines. | [
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PMC10808409 | It has been reported that using individual Pluronic might not be effective in achieving both high micellar dispersion stability and high encapsulation efficiency of poorly soluble drugs. | [
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PMC7053076 | Here, we have shown that in leukemic HL-60/5FU cells the levels of only three out of 5 NF-κB subunits were affected by BGD. | [
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PMC9429973 | Interestingly, we found a significant decrease in levels of iNKT PD-1+ cells after mRNA vaccination in CLL patients in short-term (median: 50% vs 65.22%, P<.05) as well as in long-term response (median: 46.67% vs 66.67%, P<.03, compared to baseline in paired samples. | [
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PMC2118063 | As a third approach to understanding genes regulated by IRF8 in B cells, we examined mice homozygous for a null mutation of the gene (−/−) or WT animals (+/+) (12). | [
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PMC11489351 | Of the 193 genes reported in the Putney microarray dataset, 73 (37.8%) were also found in the RNA-seq dataset of low pHi compared to control (Fig. S3A and Table S4). | [
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PMC11683240 | E–G, The 488-labeled PT (500 ng/ml) and different concentrations of α1AT or the respective amount of solvent (H2O) were preincubated for 15 min at room temperature before addition to CHO-K1 cells. | [
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PMC2777936 | Other studies looking at POU5F1 target genes in human and mouse ES cells proposed that PORCN, FRAT2, and FZD5 were potential POU5F1 target genes . | [
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PMC11190538 | The increasing pH on day 21 was most likely due to the formation of metabolites such as amino acids, bacteriocins, and vitamins as the shelf life ended. | [
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PMC11612626 | Treatment with most compounds at 1 μmol/L for 48 hours maximally increased LLVY-R110 cleavage and maintained cell viability >90%. | [
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PMC9512971 | LE last evaluation RRT renal replacement therapy, ECMO extracorporeal membrane oxygenation The median time to resolution of clinical symptoms was 13 days in the camostat mesilate and 12 days in the placebo group (Table 2).Table 2Time to resolution of clinical symptomsCamostat mesilate (N = 53)Placebo (N = 52)Events, n (%)23 (43.4)23 (44.2)Median (95% CI) (days)13.0 (10.0–n/c)12.0 (10.0–n/c)25th to 75th percentile7.0–15.09.0–n/cRange2–16 + 2–14 + + censored, CI confidence interval, n/c not calculable Time to resolution of clinical symptoms + censored, CI confidence interval, n/c not calculable Adverse events occurred in 25 of 77 patients in the camostat mesilate group (32.5%) and in 31 of 76 patients in the placebo group (40.8%) (Table 3). | [
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PMC9646302 | All data are presented as means± standard deviations and were statistically analyzed using SPSS software (version 23.0; IBM Corp., Armonk, NY, USA). | [
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PMC10196713 | Accumulating evidence has revealed that resistance to copper-dependent cell death; namely, cuproptosis, is also important for the progression of carcinomas (30,31). | [
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PMC11779960 | Nearly all TCLs express TCRαβ on the cell surface, thus TRBC1/TRBC2 targeting is an attractive therapeutic strategy. | [
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PMC9792775 | Therefore, it is expected to be a means to deliver targeted drugs to cancer patients and intensify treatment at specific sites. | [
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PMC10196713 | The following ovarian endometrioid carcinoma cell lines were obtained: the A2780 cell line (parental cells) and the A2780cis cell line (29). | [
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PMC9429973 | Median survival was 21 months in females as compared to 16 months in males (p = 0.04). | [
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PMC10669966 | No. HY-145924, MedChemExpress, Monmouth Junction, NJ, USA), cilostazol (CAS No. 73963-72-1, Cat. | [
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PMC11352666 | MERTK and TYRO3 are stimulated by all three ligands, but AXL is only stimulated by GAS6 . | [
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PMC11676670 | Using the xCELLigence system, we observed that the OVAR79 cells demonstrate a higher biomass accumulation rate compared to the widely used ovarian cancer cell lines SKOV3 and OVCAR3 (Figure 1C). | [
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PMC9780037 | Released cyt c triggers apoptosis of the cell. | [
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PMC9429973 | We also found UCK2 gene expression was upregulated via activation of T-cell receptor (TCR) signaling pathway in normal CD4+ T-cells (Fig. B). | [
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PMC11750165 | These observations indicate that the NTD of zebrafish PEX1 might interact with zebrafish Jagged2 through its ICD. ( | [
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PMC11306019 | Nonetheless, at approximately 3 nM, BTZ does not exhibit noticeable toxicity in standard cytotoxicity assays. | [
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PMC9429973 | Dose escalation, with limited treatment options in the ≥3-line setting, ASC4OPT will explore whether pts not in major molecular response (MMR) at ≥48 weeks (wks) could benefit from a potential dose escalation to 200 mg QD. | [
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PMC11745823 | Oxygen is the first element of human life, and the balance of oxygen concentration in the internal environment is a necessary condition for the body to carry out normal aerobic metabolism . | [
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PMC8010066 | Therefore, it is suggested that in future studies, the nutritional status of the cell be taken into account when evaluating QS-based gene expression. | [
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PMC11033180 | Therefore, the S956G mutation could limit Sema5A’s ability to interact with component of the extracellular matrix or other binding partners yet to be characterized. | [
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PMC7812570 | To verify whether the fusion genes were expressed on the cell surface through the GPI anchor, transduced TZM-bl cells were treated with phosphatidylinositol-specific phospholipase C (PI-PLC) and then stained with an anti-His tag antibody, followed by FACS analysis. | [
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PMC8345486 | Their activity profile indicates that they are possible boron-carrier chemotherapeutics suitable for boron neutron capture therapy . | [
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PMC9219615 | In this experiment, cells in the early stages of apoptosis were distinguished by their emission of FITC signal. | [
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PMC10577955 | The third compound BA was obtained by using n-hexane-ethyl acetate (8:2 v/v) where its H-NMR and C-NMR data were identical to those reported for betulinic acid . | [
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PMC11269792 | Knockdown of circAPP inhibits GIST proliferation and the Warburg effect. | [
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PMC11701801 | The SWI/SNF complex plays a vital role in regulating cellular functions such as transcription by modulating the chromatin structure via regulating genes related to various chromatin-regulating factors (3). | [
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PMC6617630 | These results indicate that MYC and BCL6 (but not BCL2) are regulated by BET bromodomain and can be potentially targeted by BET inhibitors. | [
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PMC11335267 | Data represent mean ± SEM. * | [
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PMC10523483 | Differentially expressed genes in GSE19188 (T, LUAD, n = 45; N, normal adjacent lung tissues, n = 65). ( | [
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PMC11679326 | O-glycosylation occurs in the Golgi apparatus and begins with the addition of N-acetylgalactosamine to serine or threonine residues in the target protein (Figure 1g). | [
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PMC4270159 | MCF7: pHER3. | [
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PMC6600253 | Upregulation of the p53-CXCR2 axis is largely responsible for RSV-induced senescence. | [
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PMC11770130 | ICV injection or local ablation of ceramide C6 in hypothalamus of mice may either increase food intake or have no effects on food intake. | [
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PMC9250505 | NPB treatment of PDO1 cells significantly decreased levels of pBADS99 compared to vehicle-treated cells (normalized to BAD expression). | [
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PMC10958426 | In conclusion, we characterized the features of cancer cells in tumor tissues by comparing with their counterparts in normal tissues at single cell resolution. | [
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PMC6889484 | Averages of two independent infections are indicated. | [
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PMC11705862 | Quantifications are shown in (L and N). | [
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PMC11437637 | The above reference values were provided by the clinical laboratory department of our hospital. | [
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PMC8633974 | RT-qPCR was performed in technical triplicates using standard curve absolute quantitation for gapdh (1 diploid for genome = 6.6 picograms DNA extracted from ACH2 cells) and spCas9 (pLenti-CRISPR-RFP657; 10 copies equal 12.01 ng according to MW 7.22 x 10 Da). | [
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"O",
"O",
"O",
... |
PMC11271278 | This approach identified known and novel enhancer hijacking events, prioritized their target genes, and defined the underlying enhancers. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"approach",
"identifi... |
PMC11633763 | Genetic anomalies in HK significantly affect the development and progression of several clinical diseases. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Genetic",
"anomalies",
"in",
"HK",
"significantly",
"affect",
"the",
... |
PMC8996378 | By SAR studies, it was concluded that the presence of an aromatic component on the lathyrane scaffold significantly improved the inhibition of Rh123 efflux (Reis et al., 2020). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC11366496 | Despite the ongoing advancements in extensive treatments, including surgical interventions, radiotherapy, chemotherapy, and tumor treating fields technology (TTFields), the GBM survival period only increased from 14 months to about 20 months. , | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC5673060 | Long-term colony formation assays show that low dose NVP-AUY-922 (5 nM) is capable of not only sensitizing both PazR and DasR cells but also killing parental A204 cells (Fig. 7D and E), suggesting that HSP90 inhibitors may be an effective option both as first-line and salvage therapy in rhabdoid tumours. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"B-CellLine",
"O",
"O",
"... |
PMC11789597 | Widely used and FDA‐approved cholesterol‐depleting drugs, lovastatin and simvastatin, have been proven to efficiently modulate CAV1 through the depletion of membrane cholesterol. , | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tok... |
PMC11656657 | Peripheral blood mononuclear cells (PBMCs) were isolated from buffy-coats obtained from healthy donors (Bambino Gesù Children’s Hospital, Rome, Italy) who signed a written informed consent, in accordance with rules set by the Institutional Review Board of OPBG (Approval of Ethical Committee N°969/2015 prot. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC11767793 | Gold nanoparticles can interfere with various assays due to their optical properties and chemical interactions with test reagents ; therefore, a careful analysis and/or control of such interferences should be included in the measurement procedure. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC11335267 | Santa Cruz Biotechnology) were injected. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Santa",
"Cruz",
"Biotechnology",
")",
"were",
"injected",
"."
]
}
] |
PMC11721295 | Interestingly, characteristics of the microenvironment, such as fibroblast activation status, drastically changed upon KRAS inactivation. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Interestingly",
",",
"characteristics",
"of"... |
PMC10748106 | Five CFDs were selected in Genipin as they were common with the other four simple iridoids (Euphrasin, Campsinol, Artselaenin A, and Artselaenin B). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
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