PMCID string | Sentences string | ner list |
|---|---|---|
PMC6160470 | Crown ethers are not P-gp substrates. | [
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PMC9429973 | Y. Cai, J. Zhang, M. Yi, X. Liu, X. Zhang, Y. Wan, L. Chang, L. Zhang, X. Chen, Y. Guo, Y. Zou, Y. Chen, Y. Zhang, W. Yang, X. Zhu Institute of Hematology & Blood Diseases Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Tianjin, China Background: As a rare, aggressive pediatric myeloproliferative disease, juvenile myelomonocytic leukemia (JMML) encompassed both biological features of myelodysplastic syndrome and myeloproliferative neoplasm. | [
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PMC10978090 | Note: In bold, the day of surgery. | [
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PMC9429973 | The recommended first-line treatment is glucocorticoid therapy. | [
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PMC5535901 | T cell receptor (TCR) activation is known to result in a rapid release of intracellular Ca which in turn stimulates downstream Ca-sensitive inflammatory signaling pathway . | [
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PMC8728081 | The larger and agglomerated RS particles could not enter through the cell membrane; on the other hand, the smaller RS particles entered the intercellular cytosol and concentrated around the nucleus (Fig. 4e). | [
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PMC11640555 | The results obtained reported a marked number of Ki-67 positive cells in the GBM mice (Figure 9A,A1 and score Figure 9D). | [
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PMC11754094 | On the basis of the read alignment results, our programme categorizes the read pairs into three distinct classes: (1) all read pairs are skewed to the cleavage site, (2) all read pairs are mapped without splitting and the cleavage site passes between reads and (3) one of the reads is split and passes through the cleavage site. | [
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PMC11733919 | The analysis of the levels of lysosomal marker Lamp1 was also considered using GFP-Lamp1 fusion protein and confocal imaging. | [
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PMC11434983 | Li et al. (2020) synthesized copper complexes to assess the influence of PPh3 on anticancer activity. | [
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PMC9429973 | Results: Sixteen patients with RR-AML participated in the study (15 evaluable for response). | [
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PMC11739670 | Ligand‐bearing MR1 was purified by anion exchange and size exclusion chromatography and biotinylated using BirA ligase (Avidity). | [
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PMC10996034 | CBP, DDP and DOX limit DNA replication and transcription via various mechanisms. | [
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PMC11628904 | Dashed box indicates region of inset shown below. | [
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PMC10522430 | This triggers the formation of the apoptosome and activation of caspase-3 . | [
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PMC11763126 | Therefore, it is imperative to advance our comprehension of ccRCC pathogenesis and develop innovative therapeutic modalities to improve patient outcomes. | [
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PMC2944824 | Cells were plated into 12 well plates and transfected with 400 ng of the p53 reporter gene plasmid (#16442 and 16443 as control Addgene, Cambridge, MA) and 400 ng CMV-β-galactosidase plasmid using calcium phosphate. | [
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PMC11285179 | Importantly, chemotactic factors play a crucial role in cell migration, influencing not only the cell's movement but also closely interacting with cellular metabolism. | [
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PMC7039683 | The significance of enrichment of each of the shared motifs among hOEAEs, mPEAEs and zPEAEs. ( | [
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PMC9429973 | Male:Female ratio was 1.3:1 in controls and 0.9:1 in patients (p˃0.05). | [
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PMC11361748 | They are the first leukocytes to reach sites of tissue damage, infection, or stress, and are tasked with defending the host by releasing proteases and reactive oxygen species, phagocytosing pathogens and cell debris, and releasing genomic DNA-histone complexes known as neutrophil extracellular traps . | [
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PMC10900886 | Statistical analysis was performed for every time point, but only virus titers at 48 hpi showed a significant difference. | [
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PMC11680562 | In particular, apoptotic HeLa cells were visible in Fig. 9B, C and E. These apoptotic cells exhibited characteristic features such as shrinkage and a spherical shape. | [
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PMC11731161 | We also conducted in vitro assays to validate the above results. | [
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PMC5308810 | Interestingly, CXCR4 and CXCR4 that were physically isolated from A2780/ADR by flow cytometry was shown to spontaneously re-establish cell-state equilibrium. | [
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}
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PMC10093184 | This feature was previously described in several canine and human osteosarcoma cell lines, including D-17 and COS4288 cells . | [
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PMC6901583 | d GIST882 and GIST-T1 cells stably expressing shcon or shBRD4 were cultured with DMEM without serum overnight. | [
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PMC11490153 | ATR-FTIR spectrum of C. citratus-AlgNPs displayed the broadband at about 3238–3761 cm, related to OH groups, due to hydrogen bonding in EO, alginate, and water. | [
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PMC11593713 | The oxidative stress index (OSI) was calculated as the percentage of TOS-to-TAC ratio . | [
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PMC10571053 | Brain accumulation or oral bioavailability of FIN56, imidazole ketone erastin or piperazine erastin could similarly be affected, as they were found to be transported by P-gp. | [
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PMC8557138 | The authors found that atorvastatin downregulated the expression of endothelial markers such as CD31, VEGF, and Bcl-2 and induced the expression of caspase-3 revealing its anti-angiogenic and apoptotic effect (Bayat et al. 2018).Organoid models have provided incredible scope for tumor modeling and pathogenesis, screening anti-cancer drugs, and personalized medicine. | [
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PMC11621565 | The positive control (LDH max) represents the maximum LDH release after lysing the dopaminergic-differentiated neurons with 9% Triton X solution for 45 min. | [
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PMC11779993 | Total RNA was extracted by using TRIzol reagent (Thermo Fisher Scientific, USA) according to the manufacturer's protocol. | [
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PMC11429241 | This work demonstrated that a high count of microstructures destined for 3D cell formation can be produced in a short time. | [
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"O",
"O",
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PMC11783017 | Inspired by these concepts, cisplatin-loaded MnO2 was encapsulated into the IL11Rα-targeted liposomes and then incorporated into the ROS-responsive injectable hydrogels with NHWD-870 loading. | [
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PMC11413393 | Second, abnormal R-loops are a widely recognized source of cellular stress and genomic instability, and may account for the accumulation of DSBs noted in this study. | [
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PMC7452526 | In the current study, we investigated the anticancer potential against human colon cells (Caco-2) of colloidal nanosilver (CN–Ag) produced in Syria using bioactive compounds in the aqueous extract of Eucalyptus camaldulensis leaves (AEECL). | [
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PMC11026382 | P values were calculated as in (a); the multiple-hypothesis testing adjusted p-value for the R166Q background was (P = 0.029). | [
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"O",
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PMC10850553 | Expression of C5ar1 in infiltrating neutrophils in IA lesions. | [
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"O",
"O",
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PMC2944824 | Although stress was observed as indicated by increased levels of both proteins, forced expression of Hr did not reduce the amount of stress. | [
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"O",
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PMC10936243 | So, we are not able to provide bedding for each one of them, as it will cost a lot…” [D081]. “ | [
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PMC11012012 | It was also expressed in EBV-positive (e.g., Raji) but not EBV-negative (e.g., Ramos) Burkitt lymphoma cell lines . | [
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PMC8735881 | Alexa555-CtxB stands for the lipid raft marker GM1 stained with Alexa 555-conjugated cholera toxin B subunit; Alexa488-Anti-His stands for the transduced cells stained with mouse anti-His tag antibody followed by Alexa 488-conjugated goat anti-mouse IgG antibody. | [
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}
] |
PMC11298021 | Similarly, Shi et al discovered that FAK downregulation significantly increased rapamycin-induced decrease of cell proliferation, G0/G1 cell cycle arrest, and apoptosis, further supporting the idea that combining multiple components could yield more effective treatment outcomes. | [
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"tags": [
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}
] |
PMC9577200 | The apoptosis rate was estimated by averaging the quantities of early and late apoptotic cells. | [
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"tags": [
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"O",
"O",
"O",
"O",
"O",
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PMC11155445 | Novel naphthoyl thiourea derivatives were synthesized and evaluated for anticancer activity against human cancer cell lines HCT-116, MCF-7 and A549 in addition to normal cancer cell line MCF-10A. | [
{
"tags": [
"O",
"O",
"O",
"O",
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"B-CellLine",
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"cancer",
"cell",
"line",
"MCF-10A",
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]
}
] |
PMC11575040 | When patients with melanoma do not respond to these therapies, substitutive or bypass pathways, such as the upregulation of the PI3K/AKT/mTOR pathway, are activated. | [
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"tags": [
"O",
"O",
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"are",
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PMC11785489 | We concluded that the DNA-level excisions and insertions from V(D)J recombination are, in general, not sufficient to affect T cell state; recombination products must be expressed at the protein level. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
"tokens": [
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"at",
"the",
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"."
]
}
] |
PMC10914904 | Ectopic expression of vtRNA 2-1 decreases the interaction between HuR and the mRNAs of intercellular junction proteins, thereby suppressing cell proliferation in primary cultures of intestinal organoids and inhibiting intestinal mucosal growth in mouse models. | [
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"tags": [
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"in",
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]
}
] |
PMC11470999 | Cellular thermal shift assay (CETSA) was performed to assess the effect of PF on the thermal stability of CIP2A. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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]
}
] |
PMC10748106 | η=EHOMO−ELUMO2 (5)χ=EHOMO+ELUMO2 To construct our mathematical model, the multilinear regression by minimum quadratic differences was employed, using Excel Microsoft Office 365. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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]
}
] |
PMC11720808 | Cellular thermal shift assay (CETSA)-WB analysis of the interaction between SCU and TLR4. ( | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
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"("
]
}
] |
PMC11779605 | Hs.eg.db, which provides genome-wide annotations of the human genome. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
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",",
"which",
"provides",
"genome-wide",
"annotations",
"of",
"the",
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"genome",
"."
]
}
] |
PMC11258145 | A Langmuir trough (KSV, Finland) was employed to generate surface pressure isotherms. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"surface",
"pressure",
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]
}
] |
PMC11718274 | After drying, the slides were immersed in a lysis solution for 10 min to lysis all cellular components except DNA. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
"tokens": [
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"10",
"min",
"to",
"lysis",
"all",
"cellular",
"components",
"except",
"DNA",
"."
]
}
] |
PMC6889484 | Figure 3Replication Kinetics of Group M Viruses in CEM/D128K and PM1/D128K Cell LinesNormalized virus from subtype B (NL4-3), recombinant subtype AE, and subtype C (MJ4) virus and patient-derived subtype B isolates were used to infect parental and A3G-D128K-expressing T cell lines. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"I-CellLine",
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"B-CellLine",
"I-CellLine",
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"T",
"cell",
"lines",
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]
}
] |
PMC11543885 | = 20 mM). | [
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"tags": [
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"=",
"20",
"mM",
")",
"."
]
}
] |
PMC7802142 | A heatmap analysis of miRNA expression levels was created based on the TPM values of miRNAs in ReN-NV and 293-NV (using TPMaverage > 1000, 1.5-fold change and P < 0.05 as the threshold cutoff). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"O",
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]
}
] |
PMC7823217 | Incubation of tissue spheroids in hanging drop cultures for long duration appears to stimulate tissue cohesion and maturation along with improved accumulation of ECM molecules . | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"along",
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"improved",
"accumulation",
"of",
"ECM",
"molecules",
"."
]
}
] |
PMC11754784 | Phagocytosis was analyzed using a CytoFLEX flow cytometer (Beckman Coulter). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
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"a",
"CytoFLEX",
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"(",
"Beckman",
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"."
]
}
] |
PMC11772585 | In the past few years, extensive research in RNA biology has revealed over 160 posttranscriptional RNA modifications. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"few",
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",",
"extensive",
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"biology",
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"over",
"160",
"posttranscriptional",
"RNA",
"modifications",
"."
]
}
] |
PMC11528603 | All dried extracts were weighed using analytical balances scales (Sartorius, Germany) and reconstituted with absolute DMSO (Merck, Germany) to prepare a stock solution. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"Merck",
",",
"Germany",
")",
"to",
"prepare",
"a",
"stock",
"solution",
"."
]
}
] |
PMC11772585 | Post-culture, the absorption at 450 nm was measured, and cell activity was calculated. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O"
],
"tokens": [
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"the",
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"nm",
"was",
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"and",
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"activity",
"was",
"calculated",
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]
}
] |
PMC9429973 | Change in lung high-resolution computed tomography (HRCT) scores for ground glass appearance is presented as LS mean ANCOVA absolute change from baseline. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"presented",
"as",
"LS",
"mean",
"ANCOVA",
"absolute",
"change",
"from",
"baseline",
"."
]
}
] |
PMC7185206 | To further characterize PD-L1 cleavage by ADAM10 and ADAM17, we labeled N-terminus surface PD-L1 on 786-0-PD-L1-GFP cells with Alexafluor-647-conjugated anti-PD-L1 antibody atezolizumab (ATZ-Alexa647) at time 0 and treated with DMSO vehicle control versus metalloprotease inhibitor TAPI-2 (Figure 2(b)). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"B-CellLine",
"I-CellLine",
"I-CellLine",
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
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"O",
"O",
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"metalloprotease",
"inhibitor",
"TAPI-2",
"(",
"Figure",
"2(b",
")",
")",
"."
]
}
] |
PMC7081114 | Therefore, it is of great significance to determine the underlying mechanism of HCC to identify novel targets for the diagnosis and treatment of patients with HCC. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"diagnosis",
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"treatment",
"of",
"patients",
"with",
"HCC",
"."
]
}
] |
PMC11739504 | Gli1 was used as an activation marker of the Hh signaling pathway. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"was",
"used",
"as",
"an",
"activation",
"marker",
"of",
"the",
"Hh",
"signaling",
"pathway",
"."
]
}
] |
PMC8956657 | Consistent with the gel mobility shift assays, we found that MERS-CoV ORF4b bound to all IMPα isoforms tested (Fig. 1C and Supplementary Fig. 1). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
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"Fig.",
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"and",
"Supplementary",
"Fig.",
"1",
")",
"."
]
}
] |
PMC8633974 | Subsequently, treated cells were stimulated with 20 ng/mL TNFα (JLat 8.4 cells) or 50nM phorbol myristate acetate (PMA) (U1 cells). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"I-CellLine",
"O",
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"O",
"O",
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"PMA",
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"(",
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")",
"."
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}
] |
PMC11806818 | The absolute value of the change in the peak current of DAP in the presence and absence of CEA (ΔIp) was selected as the correlation output signal, and there was a linear relationship between the value of ΔIp and the concentration of CEA in the range of 0.003 − 15.0 ng/mL, with a limit of detection of 1.0 pg/mL. This nanozyme-based voltammetric sensor has a better performance for the detection of CEA in the realizing simple, sensitive and efficient CEA determination with great potential. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
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PMC11787355 | All cell lines were incubated at 37 °C and 5% CO2 with saturated humidity. | [
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PMC9429973 | Summary/Conclusion: In this real-world data analysis, history of thrombocytopenia was a major factor influencing the RUX dose for treatment of MF pts, consistent with prescribing data that RUX dose is adjusted based on platelet counts. | [
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PMC11468365 | It contains data on 38 unique drugs and their interactions, resulting in a large number of drug combination pairs tested across 39 cancer cell lines. | [
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"O",
"O",
"O",
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PMC11680982 | This was achieved by using HR/HER2-low cell lines with low HER2 expression. | [
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"O",
"O",
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PMC11705547 | FASN inhibitors blocked the FASN-HIF1α-SLC7A11 pathway signaling in hepatocellular carcinoma cells, and delayed tumor growth by inducing apoptosis and necrosis . | [
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"O",
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PMC11064533 | It has also been reported that a strong relationship exists in E. coli between motility, flagella, and biofilm architecture (50, 51). | [
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"O",
"O",
"O",
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PMC9429973 | Neutropenia and infection were the most common TEAEs for any grade (71% and 59% respectively) and grade ≥ 3 (59% and 29% respectively). | [
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"tags": [
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"O",
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PMC9429973 | Patients neither deceased nor receiving a 2-line therapy within 3 years after 1-line therapy were defined as patients in remission. | [
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PMC9429973 | The knock-down of PD-1 and TIGIT at CD19 CAR-T cells exerts the superior T-cell functionality by delaying the exhaustion of CAR-T cells. | [
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"tags": [
"O",
"O",
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PMC4839679 | Though the precise molecular mechanism is unknown, the increased accumulation in cholesteryl oleate (CE18:1) and decreased accumulation in cholesterol linoleate (CE18:2) has been characterized in ccRCC . | [
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PMC10778532 | Therefore, the VHL-C162F-induced upregulation of EMT markers may presumably help the cells to gain migratory and invasive traits. | [
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"O",
"O",
"O",
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PMC10747139 | In vivo experiments showed that 48lipo could prevent tumor growth in a concentration-dependent manner with a high inhibitory rate (53.53% and 72.90% for 1.23 mg/kg and 2.46 mg/kg of 48lipo, respectively). | [
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PMC11682172 | This cell line overexpresses Her2 and is a preferential model for Her2 positive breast cancer with metastatic potential without organ-specificity. | [
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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PMC9596868 | Cell viability after 72 h treatment with quercetin (5, 10 and 50 µM) or MST-312 (0.5, 1 2 and 5 µM) was determined by performing alamar blue assay using DMSO as vehicle control. ( | [
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PMC11656657 | After 72 h (hrs), the conditioned medium (CM1) was collected, filtered through a 0.4 µm filter, and stored at −20 °C. | [
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"O",
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PMC8839885 | Thus, 2HE2 and dasatinib might act as sensitizers to restore platinum drug sensitivity to OC cells and thus to limit TME-mediated chemoresistance in OC.Chemoresistance is frequently encountered in ovarian cancer (OC) patients treated with platinum-based chemotherapy. | [
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PMC11394227 | In the ER of CHO cells, the oxidation capacity of molecular oxygen is utilized mainly by protein disulfide isomerase (PDI) and endoplasmic reticulum oxidoreductase 1 (Ero1) to generate new disulfide bonds in the newly folded protein . | [
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PMC11277157 | Lipo2000 was shown to be ideal for HEK293 . | [
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PMC11787381 | BRET curves and area under the curve (insert) are presented. | [
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PMC10988555 | The samples were centrifuged for 5 min at 700 × g and resuspended in fresh lysis buffer (150 mM NaCl, 5 mM ethylenediaminetetraacetic acid (EDTA), 50 mM Tris–HCl at pH 8.0, 2% (v/v) NP-40, 1× phosphatase inhibitors (PhosStop, Roche), 1× Protease inhibitors (complete ULTRA tablets, Mini, easypack, Roche), 1 mM phenylmethylsulfonylfuoride (PMSF) and 0.1% 1,4-dithiothreitol (v/v), DTT) and then storage at −80 °C for 2 h or until required. | [
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PMC11545868 | This cell death is characterized by a highly regulated program of cell shrinkage, condensation of nuclear chromatin, fragmentation of DNA, and formation of the apoptotic body . | [
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"O",
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PMC7961460 | After 48h, NHDF cells were harvested for RNA in TRI Reagent to study HASes gene expression. | [
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PMC6461034 | For the eight samples considered (four cell lines of Fig 2 and the four U87 conditions of Fig 5A and B), the highest rank for the driver kinases was either equivalent or better for uncorrected INKA score calculations. | [
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"tags": [
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PMC11774747 | The HERT-GBM trial also showed successful manufacturing of 16 products for all the treated patients. | [
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PMC9874064 | The establishment of a PDX model of liver cancer on nude mice and the schematic schedule of drug administration. | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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PMC5839394 | On the other hand, Ag binds to proteins and DNA, interfering with their functions . | [
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"tags": [
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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PMC11306019 | A vicinal diol is a chemical group with two hydroxyl groups on neighboring carbon atoms in a molecule. | [
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"tags": [
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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PMC9429973 | Clinical and hematological monitoring with the study of bone marrow apirate will be required at regular intervals for the early recognition of this phenomenon. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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PMC9429973 | CLL killing was evaluated in a similar co-culture, but with a staining mix containing CD5 and CD19, to identify CLL tumor cells in order to determine the percent CLL targets killed normalized to incubation of CLL cells with NK cells alone (Figure Image). | [
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"tags": [
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"O",
"O",
"O",
"O",
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PMC11757131 | The cell nuclei were stained with hematoxylin for 10 min and rinsed. | [
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"tags": [
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"O",
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