PMCID
string | Sentences
string | ner
list |
|---|---|---|
PMC11224020
|
Hence, DCs use the cytoskeleton–lipid metabolism interplay to respond to environmental physical constraints that imprint them with specific immunoregulatory properties.
|
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PMC6114978
|
Normal smooth muscle was utilized as a positive control (Supplementary Figure 1B).
|
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PMC11627133
|
Peptide‐PAINT, another variation of DNA‐PAINT utilizing transient peptide‐peptide interactions, has also been applied for super‐resolved protein imaging.[ , ]
|
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PMC11413393
|
For example, BAP1 driven ccRCCs are known to have inherently compromised BRCA-mediated DDR pathways and may exhibit enhanced sensitivity to further DDR perturbations, while SETD2 driver mutations already display splicing defects and may have enhanced responses.
|
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PMC9429973
|
Limit of detection and quantification, linearity, intra-/inter-assay precision, and robustness were determined via spike-in assays.
|
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"O",
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] |
PMC9429973
|
Image: Summary/Conclusion: Facilitating treatment of patients affected by the novel coronavirus represented a welcome change in healthcare system in early 2020, in our country and abroad.
|
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PMC10454535
|
RPMI-1640 medium for U266 cells was supplemented with 15% FBS and 1% penicillin-streptomycin.
|
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PMC10748106
|
In the case of Genipin, these zones of higher electron density also correspond to the sp2 and sp3 oxygens, the oxygen of the hydroxyl at C1, and the oxygen of the hydroxyl at C10, correlating with our earlier observations regarding molecular electrostatic distributions.
|
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PMC9429973
|
However, its mode of action is not clearly established.
|
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PMC7612475
|
As such, these data provide the first evidence that tumors with spliceosome mutations can be specifically targeted with clinically relevant therapies currently in use.
|
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PMC11629143
|
Schematic depicting pooled sgRNAs targeting the dCas9‐p300 fusion to the CMV promoter driving mAb light and heavy chain genes in CHO‐K1 cells. (
|
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PMC10158546
|
Representative images are shown at days 7 and 21 post-differentiation.
|
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PMC11628904
|
The stable conversion of native green Dendra2 fluorescence to red fluorescence was carried out using a 405‐nm laser set to 10‐μs/pixel dwell time and 45‐s total stimulation time.
|
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PMC11298021
|
GEO2R analysis of GSE225751 showed that the main genes of mTOR signaling pathway were downregulated after Everolimus treatment.
|
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PMC11476222
|
In CRL-1620, eight sphingolipids were identified and quantified, and Ceramide (Cer) and Ceramide phosphates (CerP) were the most abundant, as shown in Figure 6B, with a percentage relative abundance of 50.0 ± 0.5 and 49.3 ± 0.8, respectively.
|
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PMC11055323
|
Two-sided Wilcoxon test adjusted for multiple comparisons.
|
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PMC11576293
|
The data indicate that the 4-position substitution markedly influences the antiproliferative activity of these compounds, with the most pronounced activity observed in compounds containing 4-Cl phenyl or 4-OMe phenyl groups.
|
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PMC11279397
|
The antiviral activity of main terpenoids in Perilla frutescens, with an OB value exceeding 20%, is presented in Table 4.
|
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PMC9429973
|
With ACG-F, frailty was noted in 11% in MPN cases and was associated with increased mortality after adjusting for comorbidities and advanced age in all MFN subtypes [HRs in ET 2.5 (2.2-2.8), PV: 2.1 (1.8-2.4), and MF: 1.8 (1.5-2.2)].
|
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PMC11786767
|
COS-7 cells were treated with RO-3306 and then stained with biotin-DHPE, Ki-67, and DAPI.
|
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PMC11768927
|
Furthermore, the inclusion of the IFN-β gene enhanced oncolytic efficiency by improving the virus’s ability to target and kill cancer cells, while also stimulating an antitumor immune response.
|
[
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PMC11467800
|
Cells were cultured in RPMI 1640 supplemented with 10% fetal bovine serum (FBS), 1 unit/mL penicillin G and 1 mg/mL streptomycin at 37°C and 5% CO2.
|
[
{
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PMC11697703
|
After purification (Qiagen MinElute PCR purification Kit) the DNA fragments could be stored at -20C.
|
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"O",
"O",
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PMC9429973
|
The mean age was 24.17 (SD 13, Median was 24) years and 53% of the patients were female.
|
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PMC9429973
|
Aims: Assess the genetic predisposition of recipients to the development of HLA alloimmunization.
|
[
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PMC11740508
|
M231, M231 cells with intact HRR genes; M231, cells with targeted mutations in BRCA1; M231, cells with targeted mutations in BRCA2 mean ± SEM calculated and significance determined by two-way ANOVA with Tukey’s adjustment for multiple testing.
|
[
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PMC11476004
|
According to Sapierzyński and Dernell et al. , there is a correlation between cancer and the size of dogs.
|
[
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"O",
"O",
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] |
PMC9429973
|
Compared to toxicity of sub-sequent pharmacotherapy or allogeneic transplant, tandem ASCT is well-tolerated.
|
[
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"well-tolerated",
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}
] |
PMC8270637
|
n = 3, *P < 0.05, **P < 0.01 vs. control group.
|
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"O",
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"O",
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] |
PMC11588085
|
UMAP of XIST (Left) and CD44 (Right) on ovarian cancer patient single-cell sequencing data.
|
[
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"O",
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"O",
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PMC11394227
|
In this study, we observed that the proportion of fully folded antibodies (HC-LC)2 in CHO-PAb-QS cells was approximately twice that of CHO-PAb cells.
|
[
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}
] |
PMC8956657
|
Assays were repeated in triplicate and contained a negative control (no binding partner) and blank (Tris buffered saline, pH 8).
|
[
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"O",
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] |
PMC9878278
|
Similarly, a recent in vivo study (Qin et al., 2019) reported that exposure to poly I:C induced IFN and inflammatory response via TLR3 and impaired blood-testis barrier in mouse testes.
|
[
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"in",
"mouse",
"testes",
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]
}
] |
PMC9444294
|
There was also a single instance of a novel fusion event between SS18 exon 9 and SSX1 exon 7 (Fig. 3D&H).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
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"O",
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"O",
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"O",
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"O",
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"Fig.",
"3D&H",
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}
] |
PMC10759659
|
Finally, the slides were stained with DAB and haematoxylin.
|
[
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"O",
"O",
"O",
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}
] |
PMC11697703
|
Fluorescence intensity in the white matter is constant across samples and was used for normalization.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"across",
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"used",
"for",
"normalization",
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]
}
] |
PMC10728200
|
As pictorially modeled in Fig. 8, this study for the first time demonstrates that IM induces ferroptosis in GIST by promoting STUB1-mediated GPX4 ubiquitination, offering a novel mechanism for the inhibition of GIST.
|
[
{
"tags": [
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
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"for",
"the",
"inhibition",
"of",
"GIST",
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]
}
] |
PMC10317042
|
In addition, the cleaved caspase-3 protein was detected in the four CCS cell lines following vorinostat treatment (Fig. 1C).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O"
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"the",
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"following",
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"treatment",
"(",
"Fig.",
"1C",
")",
"."
]
}
] |
PMC11763126
|
Compared to adjacent normal tissues, 118 peptides were differentially expressed in ccRCC, with 52 peptides upregulated and 66 peptides downregulated (Fig. 1A, B).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
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"O",
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"Fig.",
"1A",
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"B",
")",
"."
]
}
] |
PMC11672881
|
While these findings strongly support the potential of CU and TQ as a combined therapeutic strategy, further studies are needed to elucidate the precise mechanism of action and molecular pathway involved and to validate these results in preclinical and clinical models.
|
[
{
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"O",
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"O",
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"validate",
"these",
"results",
"in",
"preclinical",
"and",
"clinical",
"models",
"."
]
}
] |
PMC9429973
|
Further evaluation of nemtabrutinib in B-cell malignancies is ongoing.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"evaluation",
"of",
"nemtabrutinib",
"in",
"B-cell",
"malignancies",
"is",
"ongoing",
"."
]
}
] |
PMC11743316
|
In addition, p-CFL1 expression is substantially higher in chemoresistant patients compared to chemosensitive individuals.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"p-CFL1",
"expression",
"is",
"substantially",
"higher",
"in",
"chemoresistant",
"patients",
"compared",
"to",
"chemosensitive",
"individuals",
"."
]
}
] |
PMC11371627
|
Clinical findings associated with XK variants comprise a multisystemic spectrum disorder including acanthocytosis, haemolysis, anaemia, spleno- and hepatomegaly, cardiomyopathy, myopathy, neuropathy, dystonia, choreatic movement disorders as well as neuropsychiatric disorders and cognitive decline.
|
[
{
"tags": [
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
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"well",
"as",
"neuropsychiatric",
"disorders",
"and",
"cognitive",
"decline",
"."
]
}
] |
PMC11701801
|
−CP-C27 (n = 8 biologically independent mice per group); +CP-C27 (n = 8 biologically independent mice per group).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"O",
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"8",
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]
}
] |
PMC11144382
|
Western blot analysis also showed significantly increased CRABP2 expression in Nfix MEFs (6-fold, P <0 .0001, Figure 3A and C).
|
[
{
"tags": [
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
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"O",
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"O",
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"0",
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"Figure",
"3A",
"and",
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")",
"."
]
}
] |
PMC11657744
|
Two-way ANOVA followed by Dunnett’s multiple comparisons test was conducted. *,
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"multiple",
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".",
"*",
","
]
}
] |
PMC11740508
|
In contrast, the parental MDA-MB-231 cells and other HRR proficient cell lines produced smaller cell populations with short term treatment, but with much less cumulative DNA damage, and minimal cell death.
|
[
{
"tags": [
"O",
"O",
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"O",
"O",
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"cumulative",
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"damage",
",",
"and",
"minimal",
"cell",
"death",
"."
]
}
] |
PMC11473843
|
Graphical data are mean ± SD.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Graphical",
"data",
"are",
"mean",
"±",
"SD",
"."
]
}
] |
PMC9221284
|
A mice were kindly provided by Dr. David SKAAR (Department of Biological Sciences, Centre for Human Health and the Environment, North Carolina State, University, Raleigh, NC, USA) for epigenetic studies.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"A",
"mice",
"were",
"kindly",
"provided",
"by",
"Dr.",
"David",
"SKAAR",
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"Department",
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"Biological",
"Sciences",
",",
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",",
"North",
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"State",
",",
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",",
"Raleigh",
",",
"NC",
",",
"USA",
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"for",
"epigenetic",
"studies",
"."
]
}
] |
PMC11704834
|
To date, the molecular mechanisms underlying EGFR-TKI-induced apoptosis have not been fully elucidated.
|
[
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O"
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"the",
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"mechanisms",
"underlying",
"EGFR-TKI-induced",
"apoptosis",
"have",
"not",
"been",
"fully",
"elucidated",
"."
]
}
] |
PMC7185206
|
Supernatants were initially centrifuged to remove non-adherent cells.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"Supernatants",
"were",
"initially",
"centrifuged",
"to",
"remove",
"non-adherent",
"cells",
"."
]
}
] |
PMC11770746
|
The test was carried out on a mesh floor, and acetone was dabbed on the plantar surface of the hind paw.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"on",
"the",
"plantar",
"surface",
"of",
"the",
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]
}
] |
PMC10568263
|
Effective diagnosis and therapeutic strategies are critical to cancer progress management and mortality reduction.
|
[
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"diagnosis",
"and",
"therapeutic",
"strategies",
"are",
"critical",
"to",
"cancer",
"progress",
"management",
"and",
"mortality",
"reduction",
"."
]
}
] |
PMC11401358
|
The irreversible oxidative damage of biological macromolecules, such as oxidized proteins, lipids, and nucleic acids, triggers a variety of cell dysfunctions and then induces diseases .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"and",
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"induces",
"diseases",
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}
] |
PMC11407042
|
Note: See problem 2 for the cell cluster solution.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"Note",
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"See",
"problem",
"2",
"for",
"the",
"cell",
"cluster",
"solution",
"."
]
}
] |
PMC11406030
|
The unfavorable prognosis associated with patients exhibiting higher cytoplasmic than nuclear LMTK3 remained significant in the multivariable analysis.
|
[
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"LMTK3",
"remained",
"significant",
"in",
"the",
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"analysis",
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}
] |
PMC11665555
|
Finally, TFs with both Fisher’s exact test P < 0.05 and random permutation P < 0.05 were selected as key TFs for the regulation of the transcriptional changes.
|
[
{
"tags": [
"O",
"O",
"O",
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"O",
"O",
"O",
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
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"O",
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"regulation",
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"the",
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}
] |
PMC11394730
|
These studies showed the potential of allicin to inhibit tumor growth in vivo.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"of",
"allicin",
"to",
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"tumor",
"growth",
"in",
"vivo",
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]
}
] |
PMC10808409
|
Our results demonstrated that both ferulic acid and TPGS mixed micelles formula inhibit the growth of the different cancerous cells and decrease cell viability (Tables S2–S7) with the TPGS mixed micelles formula being more effective in cell proliferation inhibition especially on Caco-2 human colorectal cancer cell line (Table S3).
|
[
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"tags": [
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
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"O",
"O",
"O",
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"Table",
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PMC8073654
|
In our follow-up study on the P-gp inhibitory effect of the constituent of Z. cassumunar , trans-3-(3,4-dimethoxyphenyl)-4-[(E)-3,4-dimethoxystyryl]cyclohex-1-ene (11) exhibited potent P-gp inhibitory activity when the IC50 value of DNM was decreased by more than that of verapamil.
|
[
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"that",
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}
] |
PMC11739484
|
GEPIA2 was chosen for this analysis because it provides a robust and user-friendly platform that allows for direct comparisons of gene expression between normal and tumor tissues using TCGA data, offering high-resolution and large-scale cancer-related gene expression data.
|
[
{
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
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",",
"offering",
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"and",
"large-scale",
"cancer-related",
"gene",
"expression",
"data",
"."
]
}
] |
PMC10669966
|
Genome annotation file and version used in the QC calculations was Homo_sapiens.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
"Genome",
"annotation",
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"in",
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"QC",
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"was",
"Homo_sapiens",
"."
]
}
] |
PMC11139449
|
PEI transfection successfully delivered the constructs to nearly 65% of the clones, with the majority being homozygous.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"clones",
",",
"with",
"the",
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"being",
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"."
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}
] |
PMC10040136
|
Although surgical resection has been the cornerstone of GIST therapy, the recurrence of GISTs after surgery is a common occurrence within a short period of time.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"occurrence",
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"a",
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"period",
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"time",
"."
]
}
] |
PMC11638255
|
a Experimental design and dosing strategy of Th-MYCN model with peripheral blood and tumors obtained after 1 week of treatment.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"design",
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"blood",
"and",
"tumors",
"obtained",
"after",
"1",
"week",
"of",
"treatment",
"."
]
}
] |
PMC9429973
|
Numerous studies provide evidence that inflammation increases the risk of several cancers.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Numerous",
"studies",
"provide",
"evidence",
"that",
"inflammation",
"increases",
"the",
"risk",
"of",
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"cancers",
"."
]
}
] |
PMC9429973
|
Aims: We aim to describe the mutational landscape and outcome with upfront targeted tyrosine kinase inhibitor (TKI) therapy in patients (pts) with MLN-Eo.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"therapy",
"in",
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"(",
"pts",
")",
"with",
"MLN-Eo",
"."
]
}
] |
PMC10006224
|
The two complexes also display different chromatin association dynamics that determine their contributions to loop formation and stability.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"two",
"complexes",
"also",
"display",
"different",
"chromatin",
"association",
"dynamics",
"that",
"determine",
"their",
"contributions",
"to",
"loop",
"formation",
"and",
"stability",
"."
]
}
] |
PMC11666785
|
The corresponding mean localization precision for all χ-values are also plotted in Fig. 3B.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"corresponding",
"mean",
"localization",
"precision",
"for",
"all",
"χ-values",
"are",
"also",
"plotted",
"in",
"Fig.",
"3B",
"."
]
}
] |
PMC11352666
|
EWS-FLI1 also induces BCL-2 expression .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"EWS-FLI1",
"also",
"induces",
"BCL-2",
"expression",
"."
]
}
] |
PMC9429973
|
Non-germinal center B-cell (GCB) cell-of-origin subtypes is a poor prognostic factor for EFS in SOC (EFS was significantly worse in SOC patients with non-GCB vs GCB; HR, 1.82 [95% CI, 1.12-2.96]; P=.02) but not in axi-cel.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
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"O",
"O",
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}
] |
PMC9966931
|
Three phytopathogenic fungi: Fusarium oxysporum f. sp. lactucae J.C. Hubb.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
"Three",
"phytopathogenic",
"fungi",
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"Fusarium",
"oxysporum",
"f.",
"sp.",
"lactucae",
"J.C.",
"Hubb",
"."
]
}
] |
PMC11544771
|
Also, a lower band, which migrates rapidly and represents the dephosphorylated protein, was observed after 20 μM of CPX treatment and the combined treatment in A549 cells (Figure 4C) as well as the combined treatment in A427 cells (Figure S2C), indicating that the high concentration of CPX or the combined treatment inhibited the phosphorylation of Rb.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"the",
"combined",
"treatment",
"in",
"A549",
"cells",
"(",
"Figure",
"4C",
")",
"as",
"well",
"as",
"the",
"combined",
"treatment",
"in",
"A427",
"cells",
"(",
"Figure",
"S2C",
")",
",",
"indicating",
"that",
"the",
"high",
"concentration",
"of",
"CPX",
"or",
"the",
"combined",
"treatment",
"inhibited",
"the",
"phosphorylation",
"of",
"Rb",
"."
]
}
] |
PMC10577955
|
Significance from A549 cells (untreated) at P < 0.0001, # Significance from BA treatment at P < 0.001, $ Significance from LUP treatment at P < 0.001 Cell cycle analysis of A549 (untreated) and treated with IC50 ALUP, BA, LUP for 48 h ALUP, BA, LUP (0.805 µM, 0.836 µM, 0.808 µM respectively): A Histogram showing the percentage of cell population in each phase of cell cycle analysis.
|
[
{
"tags": [
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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"from",
"A549",
"cells",
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"untreated",
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"at",
"P",
"<",
"0.0001",
",",
"#",
"Significance",
"from",
"BA",
"treatment",
"at",
"P",
"<",
"0.001",
",",
"$",
"Significance",
"from",
"LUP",
"treatment",
"at",
"P",
"<",
"0.001",
"Cell",
"cycle",
"analysis",
"of",
"A549",
"(",
"untreated",
")",
"and",
"treated",
"with",
"IC50",
"ALUP",
",",
"BA",
",",
"LUP",
"for",
"48",
"h",
"ALUP",
",",
"BA",
",",
"LUP",
"(",
"0.805",
"µM",
",",
"0.836",
"µM",
",",
"0.808",
"µM",
"respectively",
"):",
"A",
"Histogram",
"showing",
"the",
"percentage",
"of",
"cell",
"population",
"in",
"each",
"phase",
"of",
"cell",
"cycle",
"analysis",
"."
]
}
] |
PMC6892818
|
Results are presented as % DNA fragmentation relative to positive control (maximal DNA fragmentation) and are representative of two experiments.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Results",
"are",
"presented",
"as",
"%",
"DNA",
"fragmentation",
"relative",
"to",
"positive",
"control",
"(",
"maximal",
"DNA",
"fragmentation",
")",
"and",
"are",
"representative",
"of",
"two",
"experiments",
"."
]
}
] |
PMC11594074
|
These compounds were selected from two subsets of the ZINC15 database and the FDA-approved subset, and the three-dimensional structures were downloaded from https://zinc15.docking.org, accessed on 7 November 2022.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"These",
"compounds",
"were",
"selected",
"from",
"two",
"subsets",
"of",
"the",
"ZINC15",
"database",
"and",
"the",
"FDA-approved",
"subset",
",",
"and",
"the",
"three-dimensional",
"structures",
"were",
"downloaded",
"from",
"https://zinc15.docking.org",
",",
"accessed",
"on",
"7",
"November",
"2022",
"."
]
}
] |
PMC9727330
|
Cell viability rate of Caco-2 cells that were pretreated with indicated concentrations of either Asp or NNDAsp for 24 hrs compared with DMSO (0 concentration). (
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Cell",
"viability",
"rate",
"of",
"Caco-2",
"cells",
"that",
"were",
"pretreated",
"with",
"indicated",
"concentrations",
"of",
"either",
"Asp",
"or",
"NNDAsp",
"for",
"24",
"hrs",
"compared",
"with",
"DMSO",
"(",
"0",
"concentration",
")",
".",
"("
]
}
] |
PMC9429973
|
Aims: As it was reported that the activity of human microbiome is involved in cancer development and host response against anticancer therapy, the aim of this study was to investigate the stool and oral microbiome alterations in CLL patients with respect to selected prognostic and predictive markers.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Aims",
":",
"As",
"it",
"was",
"reported",
"that",
"the",
"activity",
"of",
"human",
"microbiome",
"is",
"involved",
"in",
"cancer",
"development",
"and",
"host",
"response",
"against",
"anticancer",
"therapy",
",",
"the",
"aim",
"of",
"this",
"study",
"was",
"to",
"investigate",
"the",
"stool",
"and",
"oral",
"microbiome",
"alterations",
"in",
"CLL",
"patients",
"with",
"respect",
"to",
"selected",
"prognostic",
"and",
"predictive",
"markers",
"."
]
}
] |
PMC11594641
|
As previously reported, this cell line is characterized by elevated expression of other Rab GTPases involved in sEV biogenesis and loading, i.e., Rab7 .
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"As",
"previously",
"reported",
",",
"this",
"cell",
"line",
"is",
"characterized",
"by",
"elevated",
"expression",
"of",
"other",
"Rab",
"GTPases",
"involved",
"in",
"sEV",
"biogenesis",
"and",
"loading",
",",
"i.e.",
",",
"Rab7",
"."
]
}
] |
PMC11411004
|
Despite cell cycle arrest at the G1/G0 phase, which inhibits cell growth, the addition of the inhibitor at 2 µM to monoclonal antibody-expressing CHO cell cultures resulted in a 1.94-fold increase in the maximal monoclonal antibody titer and a 2.43-fold increase in specific monoclonal antibody production.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Despite",
"cell",
"cycle",
"arrest",
"at",
"the",
"G1/G0",
"phase",
",",
"which",
"inhibits",
"cell",
"growth",
",",
"the",
"addition",
"of",
"the",
"inhibitor",
"at",
"2",
"µM",
"to",
"monoclonal",
"antibody-expressing",
"CHO",
"cell",
"cultures",
"resulted",
"in",
"a",
"1.94-fold",
"increase",
"in",
"the",
"maximal",
"monoclonal",
"antibody",
"titer",
"and",
"a",
"2.43-fold",
"increase",
"in",
"specific",
"monoclonal",
"antibody",
"production",
"."
]
}
] |
PMC9429973
|
Summary/Conclusion: ZO demonstrated superior efficacy to O in treatment of pts with R/R FL.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Summary/Conclusion",
":",
"ZO",
"demonstrated",
"superior",
"efficacy",
"to",
"O",
"in",
"treatment",
"of",
"pts",
"with",
"R/R",
"FL",
"."
]
}
] |
PMC2777936
|
Colony formation ability of FZD7 shRNA infected cells versus controls is displayed.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Colony",
"formation",
"ability",
"of",
"FZD7",
"shRNA",
"infected",
"cells",
"versus",
"controls",
"is",
"displayed",
"."
]
}
] |
PMC11401350
|
Mice were sacrificed at humane endpoint or 200 days post-transplant (****p < 0.0001, Mantel-Cox test).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Mice",
"were",
"sacrificed",
"at",
"humane",
"endpoint",
"or",
"200",
"days",
"post-transplant",
"(",
"*",
"*",
"*",
"*",
"p",
"<",
"0.0001",
",",
"Mantel-Cox",
"test",
")",
"."
]
}
] |
PMC11779876
|
We discarded cells with missing TRBC expression if the fraction of those cells was less than one third of all cells sharing the same clonotypic CDR3 sequence.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"We",
"discarded",
"cells",
"with",
"missing",
"TRBC",
"expression",
"if",
"the",
"fraction",
"of",
"those",
"cells",
"was",
"less",
"than",
"one",
"third",
"of",
"all",
"cells",
"sharing",
"the",
"same",
"clonotypic",
"CDR3",
"sequence",
"."
]
}
] |
PMC11802929
|
CD8 T cells were captured by SCT-dextramers from 62 HLA-matched COVID-19 participants for scRNAseq and TCR sequencing.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"CD8",
"T",
"cells",
"were",
"captured",
"by",
"SCT-dextramers",
"from",
"62",
"HLA-matched",
"COVID-19",
"participants",
"for",
"scRNAseq",
"and",
"TCR",
"sequencing",
"."
]
}
] |
PMC6268318
|
The compounds responsible for these activities in this plant were not sought (Table 1).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"compounds",
"responsible",
"for",
"these",
"activities",
"in",
"this",
"plant",
"were",
"not",
"sought",
"(",
"Table",
"1",
")",
"."
]
}
] |
PMC11476004
|
They can be used following the treatment process to reveal the effectiveness of the body’s fight against carcinogenic factors, which we can easily observe using lymphocytes.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"They",
"can",
"be",
"used",
"following",
"the",
"treatment",
"process",
"to",
"reveal",
"the",
"effectiveness",
"of",
"the",
"body",
"’s",
"fight",
"against",
"carcinogenic",
"factors",
",",
"which",
"we",
"can",
"easily",
"observe",
"using",
"lymphocytes",
"."
]
}
] |
PMC11687167
|
Patients with ASCVD and high LDL-C on statin treatmentInjection-site reactions, nasopharyngitis, and upper respiratory infectionsAlirocumab 1.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Patients",
"with",
"ASCVD",
"and",
"high",
"LDL-C",
"on",
"statin",
"treatmentInjection-site",
"reactions",
",",
"nasopharyngitis",
",",
"and",
"upper",
"respiratory",
"infectionsAlirocumab",
"1",
"."
]
}
] |
PMC11530949
|
However, these NPs have practical limitations, including instability, premature drug release, rapid clearance, and susceptibility to immune responses (15, 16).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"However",
",",
"these",
"NPs",
"have",
"practical",
"limitations",
",",
"including",
"instability",
",",
"premature",
"drug",
"release",
",",
"rapid",
"clearance",
",",
"and",
"susceptibility",
"to",
"immune",
"responses",
"(",
"15",
",",
"16",
")",
"."
]
}
] |
PMC10818573
|
When cellular DNA was used as the assay sample, both the B95-8 and Raji samples showed obvious target bands, while HeLa samples showed no target bands, consistent with the expected results (see Figure 1B).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"I-CellLine",
"I-CellLine",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"When",
"cellular",
"DNA",
"was",
"used",
"as",
"the",
"assay",
"sample",
",",
"both",
"the",
"B95",
"-",
"8",
"and",
"Raji",
"samples",
"showed",
"obvious",
"target",
"bands",
",",
"while",
"HeLa",
"samples",
"showed",
"no",
"target",
"bands",
",",
"consistent",
"with",
"the",
"expected",
"results",
"(",
"see",
"Figure",
"1B",
")",
"."
]
}
] |
PMC11371747
|
SEM was within the size of the marker).
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"SEM",
"was",
"within",
"the",
"size",
"of",
"the",
"marker",
")",
"."
]
}
] |
PMC11754094
|
Another 24 h later, cell selection was initiated with 2 µg ml puromycin and continued for 2–3 days.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Another",
"24",
"h",
"later",
",",
"cell",
"selection",
"was",
"initiated",
"with",
"2",
"µg",
"ml",
"puromycin",
"and",
"continued",
"for",
"2–3",
"days",
"."
]
}
] |
PMC11291490
|
Then, the fragment was integrated into the pVAX1 vector from Invitrogen, which includes the signal sequence of tissue plasminogen activator (TPA) (MDAMKRGLCCVLLLCGAVFVS), resulting in the construction of the dusCD40L eukaryotic expression plasmid designated as pVAX-TPA-dusCD40L.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Then",
",",
"the",
"fragment",
"was",
"integrated",
"into",
"the",
"pVAX1",
"vector",
"from",
"Invitrogen",
",",
"which",
"includes",
"the",
"signal",
"sequence",
"of",
"tissue",
"plasminogen",
"activator",
"(",
"TPA",
")",
"(",
"MDAMKRGLCCVLLLCGAVFVS",
")",
",",
"resulting",
"in",
"the",
"construction",
"of",
"the",
"dusCD40L",
"eukaryotic",
"expression",
"plasmid",
"designated",
"as",
"pVAX-TPA-dusCD40L",
"."
]
}
] |
PMC3675084
|
Selected reaction monitoring (SRM) of the precursor-product ion transitions m/z 342 → 195 for BPR0L075, and 212→ 144 for IS were used for quantification.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Selected",
"reaction",
"monitoring",
"(",
"SRM",
")",
"of",
"the",
"precursor-product",
"ion",
"transitions",
"m/z",
"342",
"→",
"195",
"for",
"BPR0L075",
",",
"and",
"212→",
"144",
"for",
"IS",
"were",
"used",
"for",
"quantification",
"."
]
}
] |
PMC10890055
|
The weight of the input powder mixture was 30 g. The mill equipped with a water-cooling system enabled us to keep the temperature of the process low.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"weight",
"of",
"the",
"input",
"powder",
"mixture",
"was",
"30",
"g.",
"The",
"mill",
"equipped",
"with",
"a",
"water-cooling",
"system",
"enabled",
"us",
"to",
"keep",
"the",
"temperature",
"of",
"the",
"process",
"low",
"."
]
}
] |
PMC11344246
|
This value was then doubled to identify the intensity value at the peak of the G2/M phase.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"This",
"value",
"was",
"then",
"doubled",
"to",
"identify",
"the",
"intensity",
"value",
"at",
"the",
"peak",
"of",
"the",
"G2/M",
"phase",
"."
]
}
] |
PMC11334037
|
The apoptosis rate was determined by analysis of Q2 and Q3 quadrant cells.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"apoptosis",
"rate",
"was",
"determined",
"by",
"analysis",
"of",
"Q2",
"and",
"Q3",
"quadrant",
"cells",
"."
]
}
] |
PMC11549062
|
The secondary antibodies (1:10,000) were incubated with the membranes for 1 h at room temperature.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"The",
"secondary",
"antibodies",
"(",
"1:10,000",
")",
"were",
"incubated",
"with",
"the",
"membranes",
"for",
"1",
"h",
"at",
"room",
"temperature",
"."
]
}
] |
PMC11543885
|
Fixed Modification: Set Carbamidomethyl (C) as the fixed modification.ii.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"Fixed",
"Modification",
":",
"Set",
"Carbamidomethyl",
"(",
"C",
")",
"as",
"the",
"fixed",
"modification.ii",
"."
]
}
] |
PMC11463018
|
C NMR (101 MHz, DMSO-d6) δ: 166.03, 150.65, 144.03, 136.42, 132.94, 132.28, 131.65, 131.28, 131.12, 129.52, 128.76, 127.39, 127.10, 126.78, 112.80, 112.27, 45.57.
|
[
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
"C",
"NMR",
"(",
"101",
"MHz",
",",
"DMSO-d6",
")",
"δ",
":",
"166.03",
",",
"150.65",
",",
"144.03",
",",
"136.42",
",",
"132.94",
",",
"132.28",
",",
"131.65",
",",
"131.28",
",",
"131.12",
",",
"129.52",
",",
"128.76",
",",
"127.39",
",",
"127.10",
",",
"126.78",
",",
"112.80",
",",
"112.27",
",",
"45.57",
"."
]
}
] |
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