PMCID string | Sentences string | ner list |
|---|---|---|
PMC4360730 | These slims also allow for a wider exposure and overview of the ENCODE data (https://www.encodeproject.org/help/getting-started#browse). | [
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PMC11723947 | Treg can also act indirectly on T cells, by modulating dendritic cell maturation and function using co-inhibitory receptors such as CTLA-4 or Tim3. | [
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PMC11543885 | This reflects a crucial experiment to investigate the ability of APEX2 labeling to capture changes in the microenvironment of activated versus inactivated NLRP3. | [
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PMC11013014 | Acid 20 (0.59 g, 0.289 mmol), pentafluorophenol (0.58 g, 0.318 mmol), and EDC (0.58 g, 0.318 mmol) are mixed in DMF (5 mL) at 0 °C. | [
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PMC8623816 | Thus, the use of RsRV5 as a biological control agent for rice sheath blight still needs to overcome great difficulties. | [
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PMC11541241 | The target of rapamycin (TOR) was first identified in yeast (Saccharomyces cerevisiae) by screening mutants insensitive to rapamycin (RAP), which is a medicine isolated from the bacterium Streptomyces hygroscopicus and efficiently represses TOR kinase activity (Heitman et al., 1991; Sehgal et al., 1975; Vézina et al., ... | [
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PMC11686380 | Cells were then fixed and subjected to immunostaining with anti-GFP and anti-Myc. | [
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PMC11429241 | The experiment was repeated twice. | [
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PMC9429973 | Human-curated natural language processing with assistance from machine learning algorithms was used to extract EMR data. | [
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PMC11686380 | p < 0.0001 (vs control) by one-way ANOVA and Dunnett’s post hoc test. ( | [
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PMC11786704 | Images of skin wounds treated with PBS (control), PC solution and PC capsules in an acute wound model. ( | [
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PMC9429973 | Two pts (1R/R and 5R/R) in the R/R cohort experienced PD and subsequently succumbed to lymphoma, both of which harbored TP53 mutations. | [
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PMC9429973 | Aims: The purpose of this study is to examine the effects of macrophage depletion on bone marrow and splenic erythropoiesis under chronic stress conditions. | [
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PMC11228511 | Mean ± SD. **** | [
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PMC6889484 | Flow cytometry analysis of the transduced cells showed that expression of the A3 (A3dr) or 3G (3Gdr) truncated proteins of A3G-D128K in the lentivector producer cells resulted in <2-fold inhibition of transduction (∼50% and ∼87% eYFP cells compared to cells transduced with eYFPip, respectively). | [
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PMC11612794 | In M phase, the Dsn1 basic motif is precluded from the Nsl1 acidic surface by the CENP-T and Dsn1 dual phosphoregulation. | [
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PMC11747949 | All these proangiogenic and pro‐inflammatory chemokines play a role in osteosarcoma progression. | [
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PMC8193046 | For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.) | [
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PMC9429973 | Methods: NGS-based MRD measurements (clonoSEQ) from peripheral blood (PB) at follow-up month 3 were grouped into uMRD <10 (MRD6), 10 ≤ and <10 (MRD4/5), and detectable MRD ≥10 (MRD+). | [
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PMC11055443 | However, it is necessary to further investigate the activation or inhibition of the inflammatory cytokines production and also the signaling pathways involved in Caco-2 cells treated with secretome in future studies. | [
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PMC10728200 | Further studies are needed to fully elucidate the mechanisms underlying the impact of RSL3 on GPX4 mRNA levels and to better understand the intricate regulatory networks involved in ferroptosis. | [
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PMC9954564 | Except for Roas2, they are all expressed in the skin (Human Protein Atlas portal—http://www.proteinatlas.org (accessed on 1 December 2021)). | [
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PMC11634794 | However, overexpression of the LAMP1 gene led to a decrease in the expression of LC3C instead, which was restored upon subsequent knockdown of LAMP1. | [
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PMC11803918 | Upon red light irradiation, hybrid exosomes could produce a large amount of O2 in a time-dependent manner (Figure 5A–C). | [
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PMC11361748 | Briefly, cells were incubated with PLA probes for 1 h at 37°C, with the ligation mixture for 30 min at 37°C, and with the amplification mixture for 100 min at 37°C. | [
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PMC10998613 | In contrast, when CXCR4-VN was coexpressed with CXCR4-VC, the BiFC signal was observed in the plasma membrane and in the cytoplasm. | [
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PMC11257203 | Then, cytochalasin-B (3 μg/mL) was added to the samples, leading to the inhibition of cytokinesis. | [
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PMC11755467 | For annealing, equimolar concentrations of both fragments were incubated at 95 °C for 5 min and allowed to cool to room temperature for at least 1 h. 10 units of T4 dsRNA Ligase 2 (NEB) were then added to the solution and incubated for 1 h at 37 °C. | [
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PMC9429973 | Additionally, HSP-CAR30 has shown promising efficacy in heavily treated HL patients that is being explored in a phase 2 trial already started. | [
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PMC10955424 | Ascites fluid derived from OC patients promoted chemoresistance causing moderate (20 %) and significant (30 %) reduction in cPARP levels as summarized in Fig. 1E. | [
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PMC9429973 | Results: A total of 158 patients were treated with R-CHOP during the study period but 20 patients were excluded because of poor records (N = 8), planned R-CHOP cycle number other than six (N = 7, e.g., abbreviated cycles plus radiation therapy), and treatment incompletion (N = 5). | [
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PMC10898159 | This mechanism of ETV1 in GIST differs from that in the other ETS-dependent tumors, such as genomic translocation or amplification in prostate cancer . | [
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PMC9429973 | Overall response rate and safety profile were evaluated. | [
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PMC11650848 | When comparing intervention groups for these genotypes against symbol search and cancellation scores there were significant differences through ANOVA analysis. | [
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PMC11574271 | Fig. 7The inhibitory effect of BMS-777607 on RON-mediated activity and the suppressive effect of ectopic expression of miR-659-3p on bladder cancer cells tumorigenic in vivo. | [
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PMC11745600 | To develop a novel therapy for diabetes (particularly through cell transplantation), it is crucial to assess the effectiveness and safety of the cells using diabetic animal models. | [
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PMC11547972 | This theory may explain why amygdalin has been shown to exert synergism under differing conditions, including drugs with different modes of action. | [
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PMC11394730 | Piperine has the potential to increase ROS as well as intracellular calcium levels, which can activate the Fenton reaction and lead to cell death. | [
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PMC11342785 | H, demonstration of the PKA-regulated synMAP circuit design from (G). | [
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PMC8609870 | Gu et al. observed that polymorphisms in lncRNA HULC may be related to the susceptibility to RSA in the Southern Chinese population. | [
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PMC8584666 | GPI-80 belongs to the VNN1/pantetheinase family. | [
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PMC9429973 | CD3+ T-cell proliferation as measured by Ki67 expression and pSYK activation were assessed by quantitative single-cell immunofluorescence microscopy. | [
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PMC10723784 | In addition, carboplatin in combination with 100 nM CBG achieved significantly lower (p < .001) IC50 values of 36.5 ± 3.2 μM, 32.1 ± 2.7 μM, and 29.5 ± 0.5 μM at 48, 72, and 96 h, respectively. | [
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PMC11721295 | To obtain mechanistic insight into fibroblast reprogramming, we subclustered the fibroblast population from the scRNA-seq data set and visualized it by UMAP (Figure 3D). | [
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"O",
... |
PMC11745823 | According to experimental needs, the transfected cells were specifically treated to detect the activity of the target regulatory sequence under different conditions. | [
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O"
],
"tokens": [
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PMC9429973 | Kaplan-Meier method was used to assess TTP and generate survival curves, with log-rank test for comparison between groups. | [
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"O",
"O",
"O",
"O",
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"tokens": [
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"... |
PMC9119314 | In addition, 4–6 exhibited potent (nM) activity against T. brucei with good selectivity with respect to Hep G2 cells. | [
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"O",
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"... |
PMC9429973 | Results: A strong positive correlation between elevated levels of CD33CD11bCD14CD15monocytic MDSCs, but not CD33CD11bCD14CD15 granulocytic MDSC and MDR was depicted in non-responder patients compared to responder cohorts. | [
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"O",
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"O",
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... |
PMC9429973 | Patients in two groups presented the same overall response rate but a higher possibility of complete remission was observed in allogenic ones. | [
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"tokens": [
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"... |
PMC10079526 | Cells were fixed and immunostained for DNMT1 and DNA double strand break marker γH2Ax. | [
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"O",
"O",
"O",
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... |
PMC9592219 | The invasion ability of HCC cells was evaluated by Transwell assay. | [
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PMC11711127 | The phenomena of molecular mimicry as a precedent for some autoimmune diseases may provide contextual evidence for this (2). | [
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... |
PMC9000591 | Among the obtained fractions, SE4 showed the most notable antioxidant activity, followed by SE3. | [
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... |
PMC7342409 | The above-mentioned imatinib-resistant cell lines and GIST882 were inoculated into nude mice to observe their tumorigenicity. | [
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... |
PMC10671321 | The cells were seeded in plates coated with collagen type I. This medium was added at 90% of cell confluence. | [
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"O",
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PMC9429973 | Summary/Conclusion: Elevated levels of complement biomarkers were associated with a worse TPO-RA treatment response. | [
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PMC11783017 | The data that support the findings of this study are available from the corresponding author upon reasonable request. | [
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"O",
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PMC9429973 | Median time to count recovery in R/R AML pts was 33 days (range, 24-78). | [
{
"tags": [
"O",
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"O",
"O",
"O",
"O",
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... |
PMC11401350 | T cells were activated either using anti-CD3 and anti-CD28 antibodies, or IL-7/IL-15 cytokine stimulation for 3 days. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
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PMC10568263 | The obtained products were collected by centrifugation and washed several times with ethanol and DI water. | [
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"O",
"O",
"O",
"O",
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PMC8270637 | Subsequently, H9 cells were centrifuged and resuspended in 500 μL of PBS. | [
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"O",
"O",
"O",
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"... |
PMC11746948 | h Immunoblots of GPX4 and ZDHHC20 in A375 cells infected with lentiviruses encoding empty vector or ZDHHC20. | [
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"O",
"O",
"O",
"O",
"O",
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"tokens": [
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... |
PMC9503669 | B9 inhibited wild-type HIV-1 replication with an IC50 value in the three-digit nanomolar range in two different cell lines but did not affect replication of Nef-defective HIV-1, supporting a Nef-dependent mechanism of action. | [
{
"tags": [
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"O",
"O",
"O",
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... |
PMC11754094 | = −0.15), resulting in a low correlation with small indels (Pearson corr. | [
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"O",
"O",
"O",
"O",
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PMC11513571 | All samples were performed in duplicate wells for each stimulant. | [
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"O",
"O",
"O",
"O",
"O",
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... |
PMC11634794 | Nevertheless, at present, we have only preliminarily demonstrated the correlation between LAMP1 and the autophagy-related gene LC3C at the protein expression level. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
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"O",
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"tokens": [
... |
PMC11727145 | Furthermore, the purpose set forth herein was to simplify the model. | [
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"O",
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"O",
"O",
"O",
"O",
"O",
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... |
PMC11740207 | This phenomenon has been observed in various malignancies, including gliomas and mammary tumors, where AD helps control MSC populations and contributes to the heterogeneity of the tumor microenvironment (Tassan et al., 2017; Castro-Oropeza et al., 2018; Majumdar and Liu, 2020; Hitomi et al., 2021; Li et al., 2022; Chao... | [
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"tags": [
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"O",
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"O",
"O",
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"O",
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"O",
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"O",
"O",
"O",
"O",
"O",
... |
PMC11537649 | Lnc NEAT1 was knocked down in A375 cells with miR-152-3p inhibitor or CDK6 overexpressing. ( | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"B-CellLine",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"tokens": [
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PMC11377827 | The catalytic sites Cys110, His668 and Asn108 are labelled. ( | [
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"O",
"O",
"O",
"O",
"O",
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"His668",
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PMC10882807 | Next, the slices were incubated with anti-EIF4A3 (1:100, Proteintech, China) overnight at 4℃ and subsequently with horseradish peroxidase-conjugated anti-mouse/rabbit secondary antibody (1:1000, Changdao Biotechnology, China) for 1 h at room temperature. | [
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"tags": [
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC10218459 | The cell viability decreased with the increasing duration of treatment with CPP. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
"tokens": [
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... |
PMC11343332 | The results were analyzed by the comparative CT method, and the 2−∆∆CT method was used for the fold change calculation described by Schmittgen and Livak . | [
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"tags": [
"O",
"O",
"O",
"O",
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"O",
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O"
... |
PMC11659734 | Nine concentrations of BPE were selected for the chromosome aberration test, based on the results of the in vitro micronucleus test (range from 1.25 to 100 μM). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
... |
PMC9646302 | GST-HA-RAC1 and FLAG-LAPTM5 were overexpressed, and the aforementioned protocol was repeated. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
"tokens": [
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"and",
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... |
PMC6461034 | Second, in a more clinical application, INKA scoring was applied to pTyr‐phosphoproteomic data on patient tumor biopsies (Fig 5C and D). | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
"tok... |
PMC11534035 | The knockdown group showed 93.04±2.613% of the cells remained vital compared to the control group's 100% (p<0.05). | [
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"tags": [
"O",
"O",
"O",
"O",
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"tokens": [
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PMC6742971 | The percentage of specific lysis was calculated as 100 × (experimental – spontaneous release)/(total – spontaneous release). | [
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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PMC11190538 | For measurements, the ABTS solution was diluted with ethanol to achieve an absorbance of 0.700 at 734 nm. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"tokens": [
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"measurements",
",",
"the",... |
PMC9429973 | Results: The median age at treatment was 58 [22-88] years. | [
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"tags": [
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
"tokens": [
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... |
PMC7602170 | Gupta and colleagues confirmed that a considerable number of GIST cells enter a reversible resting state by activating autophagy-dependent survival mechanisms after imatinib treatment . | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
"tokens": [
... |
PMC10329074 | Blue marks normal tissue, red marks tumor tissue, and purple marks metastatic tumor tissue. ( | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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],
"tokens": [
"Blue",
"marks",
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"tissue",
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"r... |
PMC11721064 | Following euthanasia, all rats were used for skin keratinocytes and corneal epithelial cells isolation. | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
"O"
],
"tokens": [
"Following",
"euthanasia",
",",
"all",
"rats",
"were",
"used... |
PMC8916024 | Four indicator genera were found, namely Flavobacterium, Silanimonas, Geobacter, and Zavarzinella, which were significantly more abundant in the gut of juvenile snails than in the gut of adult snails (P < 0.05, Fig. 3A). | [
{
"tags": [
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"O",
"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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... |
PMC9429973 | No dose-limiting toxicities (DLTs) were reported and maximum tolerated dose (MTD) was not reached (n=323). | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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],
"tokens": [
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"dose-limiting",
... |
PMC8992508 | Cytotoxicity data show that their inhibitory effect is substantially higher than their toxicity, and results confirmed that they are able to reverse the BCRP-mediated resistance toward SN-38 and to inhibit the ATPase activity. | [
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"tags": [
"O",
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... |
PMC9964635 | It is considered an important therapeutic target because of its deregulation of solid tumor types . | [
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"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"tokens": [
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... |
PMC10748106 | Across cultures and civilizations, iridoid-rich plants have been employed for their medicinal properties . | [
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"tags": [
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"O",
"O",
"O",
"O",
"O",
"O",
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"O",
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"O",
"O"
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"tokens": [
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"cultures",
"and",
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"iridoid-rich",
"pla... |
PMC9429973 | E. Tranter, B. Obermayer-Wasserscheid, M.-L. Hütter-Krönke, C. Junkuhn, I.-W. Blau, G. L. Vuong, L. Bullinger, I.-K. Na Department of hematology, oncology and tumor immunology, Charité Universitaetsmedizin Berlin; Berlin Institute of Health (BIH); Core Unit Bioinformatics – CUBI, Berliner Institut für Gesundheitsforsch... | [
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"tags": [
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"O",
"O",
"O",
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"O",
"O",
"O",
"O",
"O",
... |
PMC11409031 | Following comprehensive quality assessment and clustering for dimensionality reduction, a total of 15 cell clusters were recognized and categorized into eight different cell types, demonstrating substantial diversity across various cell populations (Fig. 1A and B). | [
{
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... |
PMC11798926 | Data are represented as mean ± SEM; n = 13–20 cells per group (A); n = 10 cells per group (B); n = 13–16 cells per group (C), each group from 2 to 3 independent experiments; ns not significant; *p < 0.05; **p < 0.01; ***p < 0.001; ****p < 0.0001. | [
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PMC11672142 | The EPR spectra of the pH 2 and 8 species are very similar, revealing a low-spin (S = 1/2) Fe(III) species (Figure S15). | [
{
"tags": [
"O",
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... |
PMC10490530 | The obtained results from the co-expression of the above constructs in A2780 and SKOV3 ovarian cancer cells indicated that stabilized p53 transcriptionally down-regulated PIK3CA and attenuated the transcriptional activity of NF-κB. The ChIP assay supported the conclusion drawn based on the results of the triple lucifer... | [
{
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"O",
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
"... |
PMC10940855 | Loss of EPHB1–Ephrin B2 signaling impairs multiple myeloma pathogenesis. | [
{
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]... |
PMC11687663 | Ramachandran plots for all residue types are displayed in Fig 16S in S1 File. | [
{
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PMC11750712 | T cell fratricide during manufacture is avoided by depletion of TRBC1 T cells before transduction. | [
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"O",
"O",
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"tokens": [
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PMC11576293 | So, from such a perspective, we thought the experimental determination of lipophilicity would give information and a clear idea of the relationship between lipophilicity and antiproliferative activity. | [
{
"tags": [
"O",
"O",
"O",
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... |
PMC6600592 | Cyclohexyl (E)-4 -methoxyimino-4-(4-chlorophenyl)butanoate (4D-2). | [
{
"tags": [
"O",
"O",
"O",
"O",
"O",
"O",
"O"
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"tokens": [
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"(E)-4",
"-methoxyimino-4-(4-chlorophenyl)butanoate",
"(",
"4D-2",
")",
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]
}
] |
PMC11297139 | Thus, our data indicate that ARID1A builds nuclear condensates via PrLD-induced phase separation and recruits BAF subunits with the aid of Pfam homology domain. | [
{
"tags": [
"O",
"O",
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"O",
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PMC11536589 | Images are the removed tumors in the mice that were killed on day 16. | [
{
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"O",
"O",
"O",
"O",
"O",
"O",
"O",
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"tokens": [
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