sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
bcd5ad28e6aca9882f7a33f55a6827b4bf34c8b146ccc1288fd9de9d7bf1de79 | Java | 6,859 | 147 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
e513d9e98f0c40b7ede023b4a39fa3a8b3e4fc59a6a6925d84939c1096ebd8eb | Java | 6,861 | 203 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
07beb82894c13c38e921d1fa9a9560eb29f6702b55d1753460bffb227257f039 | Java | 6,864 | 199 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
94ec013404036a76cdb8ea66dd9253eeb26b53f91bef5f4daebf43ff82b3023f | Java | 6,864 | 183 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
fde1bd212bc52e9dbef2db2a0a16db3439e15fb1e9b6e0508abc465976c7f654 | Java | 6,884 | 185 | package edu.cmu.tetradapp.model;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DiscreteVariable;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.TMath;
import java.io.Serial;
import java.io.Serializable;
import java.util.*;
public final class DerivedTreatmentSpecV2 implements Serializab... |
19fd97687405d24aec21164132429ce472b840e3208ba3cde85a30dcfa840a38 | Java | 6,889 | 237 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f2a89f3bf8ed4a46322134fbac183fd9caac9488a36ffde48cf33c97de216f2a | Java | 6,898 | 185 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2e374137381c8c6956fe3933aa752a34a1a530aed9a3facaca50904860c9bd49 | Java | 6,901 | 186 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4a07d3d7a5394cbdaf928a730c8cd4ab88babade2bf2e711aca691552048c422 | Java | 6,931 | 162 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
91f3d9d2c0fb7c7915212f843317adfede100bafe37561e1a1f881eed15999ad | Java | 6,933 | 216 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
00b932f0f3f2cb1566409e257299bea9c2c0e789a91f1835fac63fc3c7423471 | Java | 6,934 | 184 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
e66f4bcf3a84ded5d65c12b5bc85b9f206c9a13d7a686fb93d6b24de6e09ace8 | Java | 6,934 | 153 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
081332f0a8f9fdf5ad635dba159a7619b7b88c4dbca9233cce4b37847bae4874 | Java | 6,936 | 186 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
2277b8f4a65d1a7cfb67e4ff4d5bb50cde5ec7bc05c4d046bdaad85a5a5ed312 | Java | 6,938 | 166 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
c29d6878fdbed40a2e3bb4ede4c0f0823a3a1c1c73fc59c7eb14b2ce8819c879 | Java | 6,940 | 173 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5092eb6cbcd6a4d8c8375cee8a1bb6a2508d6c3d80260c293f298b98036fc5c3 | Java | 6,942 | 147 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8e34dd238f6ed5919025edf738536444434d509a423a2193513f296222c0d18c | Java | 6,945 | 197 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
264e9f72ebfae9e978a6adbe97c363c5d8cfa74dac63d85c869940d30bb1487e | Java | 6,961 | 188 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
2aaabf1bfc1a9a4e752761d9b41cc99d1b51c776c8e9efbc50bec39daf69b2dc | Java | 6,961 | 180 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3977d3d9d10ece971bb98020198d18621124a6aabb4435ccb325d3a8fa197798 | Java | 6,962 | 170 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
42b80b7a05c1ce1b94158902aec66330c090678ddf0cebaca6dce556a5f8e5a3 | Java | 6,964 | 142 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e0efc3cc31e0d3307cdba9ce213c0a82baeb7277136c8ec418f82d77796def98 | Java | 6,965 | 142 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
145f9315a01655a54c403c04de36034e4195c3da2ddfdac788207d7400203ce8 | Java | 6,966 | 149 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
eccdf78ed7d0f394fd4f0afd5520f3c458eab241f23d15dafc4182cdd0d6ade8 | Java | 6,971 | 201 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
94cb91ba5a8b85edaecfacf09e9591c6e862702c793e21d3bcf6598a9411312c | Java | 6,972 | 206 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
578c989d8d2049fb57dcfcbed68a3a4091702ce6635dde3854c94fb520d8f434 | Java | 6,975 | 187 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
861fba6457a301ab88cbc8cef6b0b99c155c966e86538a5bb8a495a2ef5ea1e8 | Java | 6,975 | 129 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
e629e21385c0c983f8c81a00e9142a5c5fd55d0d926a89d44d5ad09415b3f1d3 | Java | 6,995 | 187 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
344b796681e216dec1594dbcf8b983d5cd2a40270888abec116c2fd5db3cd371 | Java | 6,998 | 187 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6363b09748cb43cb8d48b79d6035bb1e120464c300daf922fd719aaf3144cd19 | Java | 7,005 | 216 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
27674316b3b14bc3876d49b096449301273a8e33b25a850806fdc8d601a8d49f | Java | 7,012 | 150 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6e5dd7d8ecb2201b14c4dbbca517575021ca688fe3e96432b9a9d61e495b7f3f | Java | 7,017 | 198 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
1329e258c3f6454a28ba65d3acaba18ff57ac8d422e9081c127ecc6ecdb4c2c9 | Java | 7,025 | 177 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
5e28c0df8ec55b5bc5f7e26170f1678236648ebf6b5ccc154a8cd0f61d212aa7 | Java | 7,026 | 156 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
48cf60a231702c161f6bbd6dd1736435d230b92caad1973a0110df9320409e80 | Java | 7,034 | 174 | package edu.cmu.tetrad.search.is;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Node;
import java.util.List;
/**
* Instance‑specific scoring contract used by IS‑FGES / IS‑GFCI and related algorithms.
* <p>
* Implementations (e.g., {@code IsBDeuScore2}, future BIC variants) compute local scores t... |
336f75bc2f4696b96688649b7761e44c658af53ee81920ddb3e1ae0abe541ba7 | Java | 7,055 | 178 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c2925cf5a60dbbf9ca67b5af928ebe631bb2cfa3d554cdeb87f5a92507867fa9 | Java | 7,095 | 196 | package edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag;
import edu.cmu.tetrad.algcomparison.algorithm.*;
import edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper;
import edu.cmu.tetrad.algcomparison.utils.AcceptsKnowledge;
import edu.cmu.tetrad.algcomparison.utils.TakesIndependenceWrapper;
import edu.... |
8cefdd131fc2a67bc33d9d8ec86cf1f505b7bb7dcd47f5a04a5b027b637b99cc | Java | 7,120 | 240 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4c6d9af1335730d2ddc0aa73c18e1d4aa7076e4752acc59f84fa630c8b5455ea | Java | 7,124 | 150 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
93712a8d4751030f5d1dd2f3ce7ea91da926361272c00d2b3a5b2e7fd92a8bb3 | Java | 7,128 | 208 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2db25f8e478813d5a2e068361cd4c99efb8934229ca41269e1c9cf654da7d455 | Java | 7,136 | 236 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
16cd19a6622fb5be7df4ea92aad0528e63dffce6a3183d5722856dad07352858 | Java | 7,141 | 188 | package edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag;
import edu.cmu.tetrad.algcomparison.algorithm.AbstractBootstrapAlgorithm;
import edu.cmu.tetrad.algcomparison.algorithm.Algorithm;
import edu.cmu.tetrad.annotation.AlgType;
import edu.cmu.tetrad.annotation.Bootstrapping;
import edu.cmu.tetrad.data.DataModel;... |
5a1f754dcae4d50840978482c1c1304fe328ab0b0225c83a32f3002025855c57 | Java | 7,152 | 245 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f7f76ef8dee236c5b6aeb2e50796a2dbe934bd1f5649e950add8919ba5aa9ca3 | Java | 7,169 | 158 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
510af1587e13c399d841234d33b474e2c11379e7b68c3f839c9b24ea21d7c73b | Java | 7,172 | 150 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d765eaf39c532811f1bd78cf13d3a9f0db655184ffe9d5b669e5ed4786813cfd | Java | 7,178 | 216 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
709707fbf8a2f8b5d7f7bea975c4669ab32297389175827f62cf81f7c1cb5ca7 | Java | 7,182 | 157 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
196fe5bc7594e73c13d0ef227efe47ab534a29666b209db19a49d073c1cb6c7b | Java | 7,185 | 226 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
09eac6439ab8515d146312d851796093b9f1ae7390ea41f7ebeb1f23625bc5e2 | Java | 7,196 | 226 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0c1c5dcfaf8b6d1413db67ecc7ff606a4b31e796d61ef80d9b1fc7c6fb439f61 | Java | 7,206 | 213 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
205d43bfe9013f7f4ef3e7bf50bda6f4456a350c420a3b0eca1a6ef1926b538d | Java | 7,211 | 204 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
99c942cd00952b83afdb10def2285dc506101dd4c2d29165c03cf5dd485cda4b | Java | 7,213 | 206 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
90a30a1ac7bf59357737950f341fd773535af0e9c00be605fb025ffb2cf69c69 | Java | 7,219 | 184 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
02e13bc2a0d1661fe276ca05a5024e317876d2397edf8979be5a76aea05bdf11 | Java | 7,236 | 227 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4be57d0b50734a1f80feebed8cf1d2e6e5e7c061bc0be1fcc1082c72b8d5614f | Java | 7,250 | 189 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
831fba1eaecc0a8372604905fd3f8ae9bdbb6afcf3716db6d84e3b5656187661 | Java | 7,253 | 207 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0ab524ffc4cd9f801d09f89fd981763d5ea998b38c73d49e39cb90d171d9e51a | Java | 7,255 | 177 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
cde901b0c93629595b71b942df3b0d9f179dcf1c063c5307e635aee30f035726 | Java | 7,255 | 232 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c84e1844a8b04ee35388a69cd4abbc10683ebf142083b4a568e4e11f8aac6479 | Java | 7,277 | 178 | package edu.cmu.tetrad.algcomparison.score;
import edu.cmu.tetrad.algcomparison.utils.AcceptsKnowledge;
import edu.cmu.tetrad.data.*;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.score.InstanceAugmentedSemBicScore;
import edu.cmu.tetrad.search.score.Score;
import edu.cmu.tetrad.data.missing.MissingDa... |
e76efe78d9642dc3f19a91982fdd0857a4df4a920aaf90a3d53b00063e3fe5e4 | Java | 7,313 | 222 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
871916c08128b5d9b92a9a7f605d396a2ce254d1fa32cab64afc53e244f72121 | Java | 7,314 | 147 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2c7dbd1bbff34d679ae0631eabe1203fb0e2ff487750868d645e752b372ad377 | Java | 7,318 | 178 | package edu.cmu.tetrad.sem;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.GraphUtils;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.score.TRffBicScore;
import edu.cmu.tetrad.util.Parameters;
import org.jetbrains.annotations.NotNull;
import java.uti... |
732b8e9eb65d1b604a7b21561b125323bab0d4108558a45435196c30712876cb | Java | 7,321 | 214 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4ea77fd2abcc4a27ed71de3e1aeee5fc0c91bdb2226ca5ae40838560c3dc21f5 | Java | 7,327 | 217 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2bca3fb4923a5160f19d75ac2cfe00231254aa7e6746228f860481bd441c581b | Java | 7,359 | 153 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
48adcb7f02915749e2f3f100fb5a758e907ecb396de847ef5bd29aef15f1623e | Java | 7,372 | 248 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6b8edb021b70f9962ceb3e7529f94553905e237a01710cb62cce1e70a43915bf | Java | 7,373 | 197 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
96bd0adf6c152c39bf83f0750f42d9205ade3f3b97c469f9141fe0aa6a5d9519 | Java | 7,374 | 204 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
2bd8313702fa9b2dc43bdf735ef0f01142ad731651e13fea1d5c11df8aa79e78 | Java | 7,376 | 211 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d888c284b0c5fe09375d10d2d58db2fa525208e2b4cfa70de4d90c74aef51fe2 | Java | 7,390 | 168 | ///////////////////////////////////////////////////////////////////////////////
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
// and Richard Scheines. //
// //
... |
34a80ef1d9d5e484119326f61abcdccc724f1dc20a7c5dc246b2a7845aa5cb75 | Java | 7,394 | 154 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3fd3919f3a05c8085fa0b19a2b5a6a37a62eea401cc927943a29c34b13800f22 | Java | 7,411 | 179 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
cc5228a8f3e6d2a30d82fe35549a1a9cad34976cb8f28642cd08f4d8ca10e812 | Java | 7,418 | 228 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
ba6f77051d8db93e315a23d764b5f7d4afa18d5020f1d5cf2a50ac6a04c1836f | Java | 7,433 | 167 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a04f1f59da0038943d35c101b48152426fec960589193942a4ac7389bc730ca1 | Java | 7,443 | 189 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b839bc67379f17b0a437ef30f72880e1a6a8bd00b031ea38d93555a9569f9704 | Java | 7,445 | 240 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
0a5fa96f393233c309221024d8a60a1cd31ce149740490fbb1ada71eaec975f8 | Java | 7,474 | 282 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f5a78147a45c5de4810a08edbad62902e56c2fb14826f92227fcc9c8e72b43a0 | Java | 7,475 | 235 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a7574c53c90583a3dfb92e6e4164c7f54df81dc55c7aa88a02444107e9010616 | Java | 7,493 | 191 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4704956e45414a491b3881528193163c8f802c70b3c1753dcc3148fcf85444c8 | Java | 7,496 | 181 | // Sanity check for EdgePriorFacade. Compiles against fakes; adapt or lift into JUnit.
package edu.cmu.tetrad.search.harness;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.graph.GraphNode;
import edu.cmu.tetrad.graph.IndependenceFact;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.test.Ed... |
411dde86a7a44f55a69c26cfabd0f8059512a763be9135c5a32dfbce9c114fbb | Java | 7,498 | 217 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8ac4f83ef7822897aa2c46ad408ae7337306e580998a1a8670febbeda8fc632f | Java | 7,513 | 201 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4b402ac067d8f37b0c18cb022a87bbaf0b77b0769f54ae8c5dde2b94ab9f990a | Java | 7,526 | 193 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f99d19e16d201b01bb4f604006f28041ddf9de8b926570f1dc5dc8c55374f5ce | Java | 7,532 | 223 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f549bcdcb1642e4c4cb51822f1b8520ed3933ea4789b47f363e11ca46b841629 | Java | 7,533 | 185 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b0810538b4e27cca42f652d509d12330112ab864759631a80117fdf8ab1c3824 | Java | 7,535 | 220 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
b4844d0c653dfaa0c3dabfb861d8294817182ab86a3e68655009d4e12887de4f | Java | 7,548 | 195 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
45578e914f0ac851f4df697cc6ed383463ade706a681490115f17dffe2bc7e38 | Java | 7,565 | 220 | package edu.cmu.tetrad.search.utils;
import edu.cmu.tetrad.graph.Endpoint;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import java.util.HashSet;
import java.util.LinkedList;
import java.util.List;
import java.util.Set;
import static edu.cmu.tetrad.graph.GraphUtils.distinct;
/**
* Represent... |
4df9f7d5abf3b0f1217cb87c16386336b329182a0cd5d75b7998c10d7789b752 | Java | 7,566 | 185 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
7ee59c2d3e8d5665185608d1c0b7133e5138e238113a20ec7a56dff8e2ce740c | Java | 7,575 | 207 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
56ad995e2f94ba01cb5b049a5936114afa60dde16900c446c208c1fcc08263be | Java | 7,580 | 233 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
61d3a7f3a8ec00fbe8cef4ab363d562a2d9b74db403fc844adc2bf67aa47fc34 | Java | 7,592 | 231 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
801d635635bb8d5ca50552aecba92c9eb16371b90b95ea5c3bc2369309ea2740 | Java | 7,595 | 213 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d888b7b42d7dbc5efba4742a93ca61ec1f066ca719f707147e5ce31a508ee46d | Java | 7,611 | 198 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
93a0a23b95817e13fd97215ab8ba2e8c394deb79530c003483474e7fb5781ba4 | Java | 7,628 | 239 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
872bda75d7d3439375aa65c2b9e3faa8f3df685225fe2aeabf8e58ea7556ef24 | Java | 7,636 | 169 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
62ecc58ee4d2ff59a85472ce5c994b6ecc6a010f89372b03e40736bdf523b42f | Java | 7,640 | 215 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
cb0ed0357dac7e62f68c62a1d2e214b3e0a050f6536b1565ad71b154128f2c10 | Java | 7,640 | 199 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
62830df260fb1a78d5d1e2e968c300fb67b3aaf505eeef1288af13e2f875ffe8 | Java | 7,650 | 181 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ec522adba9be810ec02a0055071d63d66cf7f7dbc6f79008900fdfe594dc1171 | Java | 7,661 | 198 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
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