sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
eb28980909fb09683f664b06d0eb46569fa9541b40de8b78b42d7f658b7a056c | Java | 10,316 | 377 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
90b030682eecaac44c25a655006fa5d3ee451a81fdee06a9c4a8288fe9efa27a | Java | 10,322 | 273 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
56a697882666a38285e7802b1c815e4cf4867fe49c72387a3ad8f2a9c7e812d2 | Java | 10,334 | 272 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f7b9e0cdd41aa906cba9f27fea831b03028536168ebaf36904fc0b4e0afa2b52 | Java | 10,339 | 262 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9f9016ff18330268434edb355c83f453077632dbedc7a7e20229d59a0c89b5a6 | Java | 10,341 | 250 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
138b8eb499b4bc3c43c37e80c239f6896137dd9fb6929c4d35b6949b24298b8c | Java | 10,343 | 293 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7db138ccc6b3fed1cecfe290b430e0b7c433a36321a8189f02af48feee489cd0 | Java | 10,344 | 334 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
34d1c1b895da66ed466b57f525eceec1f100e7f16f9923a9380003b946d50dad | Java | 10,355 | 277 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// Copyright (C) 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, //
// 2007, 2008, 2009, 2010, 2014, 2015, 2022 by Peter Spirtes, Richard //
... |
d88b2b4f8b59e340605e28c4a944b66161d563d9eba9003a9de6d9e368a7c142 | Java | 10,358 | 219 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e7750b8c891612dc3d077b4622abe4f31f59689d8e5b6ee67cd91d348382eebf | Java | 10,385 | 277 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
aba6b8a4c92fb30bc458a77e1bc20507b5c92d403568b62f8f55b25c9db976d2 | Java | 10,388 | 242 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
fafa44dba0d7228c0ac5877f346eb21ae5f6da383fb73fa0d2785e79097394af | Java | 10,395 | 280 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
394c3e339be82d9bae4789288d5ace2aadf1e1c11dcc07108aa42a1c1276ed17 | Java | 10,398 | 317 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
aa7af0acea50f2b122df8d0c2a0e71ae2d42ccac3e3b9ca93c326a689e2ee0ac | Java | 10,418 | 378 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0e6ee12bf0233bd35d0905b6311c6451f08ff42e32cc5432c6dfa3078a04be5d | Java | 10,421 | 268 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e961fd61a3ac0ef792cc1b5b3379147295399dde8347a17dd12b8b75b1a27b88 | Java | 10,426 | 280 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
67ddfa0d67ee26cdb304348099b0e94c3ed4decb596799dbdb5273b62ecc88fa | Java | 10,436 | 255 | package edu.cmu.tetrad.search.is;
import edu.cmu.tetrad.data.BootstrapSampler;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.GraphSaveLoadUtils;
import edu.cmu.tetrad.graph.GraphUtils;
import edu.cmu.tetrad.search.Fges;
import edu.cmu.tetrad.search.score.BDeuScore;
... |
3631eb64bddc2f09ba60d2ce434f4d1487180f8248865bf5c69dafd66c11e219 | Java | 10,476 | 287 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
97be01a9d18be235533a6621509de3137765815eb784b1041358545335834540 | Java | 10,493 | 294 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
fe8f2a350e50cca9481bf7d70906f103a437c251d37882eefcb46c6c7d6ed17f | Java | 10,494 | 232 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a385d798d8bc612271e35e2dea4e544c41b5475afcce8446bd99550f70976c4d | Java | 10,521 | 305 | /*
* An Android app to control HAL.
*
* Much of the code comes from here:
* https://github.com/luugiathuy/Remote-Bluetooth-Android
*
* Hazen 02/14
*/
package edu.harvard.zhuanglab.tma03;
import android.app.Activity;
import android.bluetooth.BluetoothAdapter;
import android.bluetooth.BluetoothDevice;
impo... |
a07b6de9efa1c283f04acc87d4ad8c6a5e78a70bc21e5d77e3db6b59da5fc0d2 | Java | 10,535 | 322 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
bc41a16635c3894f6ae63e028ef57e25c39cf9a522f202b30abf3c5c1e925c41 | Java | 10,558 | 291 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
0c788a3fb26914963956d7927d07761880d0121b7e9efd9d1f46471406205a4f | Java | 10,561 | 256 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
604581a54e631a4383a144a89be571b598a52abf15b57450937eb1d56510a461 | Java | 10,562 | 226 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
c9da84df6aa8e3a42404bb1811f2dfa1af9e2409aee9fe59e1e3876be01ba8c5 | Java | 10,581 | 291 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
23adff7d8f8728de116d3e523b543eebcda29f303f29957eaefeb6c8cb946b46 | Java | 10,598 | 334 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
72b9406466b3a498066c3cf78d282543907374a9c78d30b5ad16141c213ca264 | Java | 10,652 | 245 | ///////////////////////////////////////////////////////////////////////////////
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
// and Richard Scheines. //
// //
... |
d064102feaac67dd49c609dac5a230249dae40895c4fc69bc880d4f73ede9b66 | Java | 10,675 | 387 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
09c10677584637771c8c2fb095e1aa463d6bab85696f11b35641cd613d12176f | Java | 10,680 | 290 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3a654805262a331bb139b79649689d1e8e01e264b7ac6c0f2c86b24ff8273bde | Java | 10,700 | 287 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
4bd82b721cc2ecb97c8cc011081b9bb820e893c3198d1f0701e83425368b1314 | Java | 10,712 | 215 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
540b4cc28079b1d9e121cb9df07c2beec546cec63955d71ab1bff4d94319034f | Java | 10,712 | 278 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ecd858bd19d2c16d0a3c47f52f6022069a72c8f7eb1041b72ce4a25fa334193e | Java | 10,715 | 316 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5f0fa180a7cf2f6f94874084e0cc21d345b68a70f28a1d30d9b2297e8319d1d8 | Java | 10,736 | 304 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b2499746a3def6fd502eda2e1a9294c64c340ec386067aeb3a4000012e9d0f82 | Java | 10,738 | 297 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
818cc0f564cefe9b9fa900f9dd6e9349e58f1205599fc762690e265b943251eb | Java | 10,746 | 321 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
b7a9b2b4d4608591d7fd0ea3ede7a55ad38d9f51af93578c48e7976f442cc367 | Java | 10,777 | 231 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
06f11ded932d9cde53e8564c2837c6a77f60953ea04856354f037f4635238ee6 | Java | 10,787 | 314 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
17661c668ec30ec3246bfc59fcfade8c19c3e6d0d906fda7c92c4aa93790057b | Java | 10,844 | 307 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
14215e7cca4d218ff4b62903937f9d91e4b9cc20196c3926b53b40b41dac2eb9 | Java | 10,847 | 290 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6b1341d23f4a4960ce025d43df1b0e3899fe85c391c5ab59900e6e10c73e9127 | Java | 10,854 | 324 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
dcbdef207d04b25cfd85a1a8659d4862c007242215670f1ed9d548c7e9f409e0 | Java | 10,870 | 283 | /*
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of t... |
12e6fcd9778209e768b0d7ffcde860d7b9b4076c5e1b832993d1ed4827727fc1 | Java | 10,872 | 309 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a9e47a8d5630f001d43ad366b7a65e2fd485831d5bd81b1adb8e58dbb4b96616 | Java | 10,907 | 244 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
c7f39a465a880419a277eb6bbcac444dd09fac41fe8e4e2a77f00fe8d88e64d9 | Java | 10,910 | 309 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2f5740766c415b3c8ba82363443d4955f48799902aa32c87e7101ccdf09f7fa5 | Java | 10,933 | 324 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
986447dac98ac2f94a446e6102352f3e3d3ecfdfe96d3416c66045fbdad98924 | Java | 10,935 | 358 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
84958fb8cc48414ac25e754965603db56f69e39689367a92cd417235297f5223 | Java | 10,948 | 333 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7d1e89b6c245532b89ea7e495acc22b56f9cd9fd039c557e3791e681d5f1cf0b | Java | 10,955 | 294 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
59d438e5625692570d518a18c2bca61b1e623f1887dad49f4d7c894adcc64768 | Java | 10,956 | 238 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
47f3c4c11261b8cfb5ecc39c155a8be01b70842ef3f00b789f59f85723f6aba9 | Java | 10,963 | 316 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
bb92efc7d24480693c849e1ac94935fa890afebfe3a8c49b157a6a95f3b32b5a | Java | 10,982 | 275 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
64d00dff036e15ab36b86909969844d0ed55fe3344b955349966fabc263b7a49 | Java | 10,992 | 320 | package edu.cmu.tetrad.search.harness;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DataTransforms;
import edu.cmu.tetrad.graph.*;
import edu.cmu.tetrad.search.Fask;
import edu.cmu.tetrad.sem.SemIm;
import edu.cmu.tetrad.sem.SemPm;
import edu.cmu.tetrad.util.Parameters;
import edu.cmu.tetrad.util.Par... |
e54428ffe64780a46029250339286257c30cb5fef7b0cda72881a703f26f6520 | Java | 10,998 | 333 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
9d9f3b6dd1ba26026ff4da8e658e15b28749856059e93aff8a61f9d1a6befecc | Java | 11,010 | 297 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
98cf4d069f0ea4957d13a216b31f705a89809c1ce70c76c72fbd7daf65d629d3 | Java | 11,017 | 245 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
b766188641b4d6dde9cde3fb32dc36f2c430ed29913522298d48f31bac85eae7 | Java | 11,042 | 268 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
7afee8e412c03f119fbab7cfb30583e4e129a1d6a582b377702dcf4c71e0ad1a | Java | 11,082 | 308 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
62e689a6e6f325e60c420954707459c27fa4cb648e6830ade52ab8c1d107dffa | Java | 11,161 | 350 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6f613ebff80641dfeab2f81ee050a42510bb61186ad2d55955447bad4e138f07 | Java | 11,201 | 253 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DiscreteVariable;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetradapp.model.DerivedTreatmentSpecV2;
import edu.cmu.tetrad.util.TMath;
import javax.swing.*;
import java.awt.*;
impo... |
0886097c7f34579da2aee19b85bdd7c7dbf298a1bdd4bf03f74503ef1e3d74c8 | Java | 11,203 | 285 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9a60261fc964f293c6cd992e2d88f93ebbaf142b2f3d6725bf7cd9b32f752e2c | Java | 11,211 | 265 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2fa8104355e6c2fb216f6a6aa683f865852a164cc797cc7e8ca5b0c4317196e1 | Java | 11,223 | 305 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ad644ec6bf645c06b3351df46526b2986ef24e11d28b17fb451715a3bc1d51ff | Java | 11,226 | 359 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1f9a4ce2ccd4fe9466f3973e94336cf83df45003633b6c37bda54a66e5eb3138 | Java | 11,245 | 287 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
ffb108853aeab715200370f84f8fa3b54c658e3e6013551a6a97ef961478ba90 | Java | 11,252 | 319 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
1e959a3b8dcba77a1a57d8813eaa0f1f88513ab9becadebb5e19febae640a2e2 | Java | 11,261 | 304 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6df9a3c6e579baa97433cbb92103812c2992cf0ac74f95b653f7b618acd26dab | Java | 11,276 | 321 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
b74968f6460116aaebefeab1a0278936e5966eeb42ed0e3f54957f8202a84b99 | Java | 11,282 | 329 | package edu.cmu.tetrad.search.test;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.TetradLogger;
import java.io.*;
import java.nio.charset.StandardCharsets;
import java.nio.file.Files;
import java.util.*;
import java.util.concurrent.atomic.AtomicBoolean;
/**
* Spawn... |
1ea6bdfce3030bf9d977a3fb6cbe75a018f35d4875b188e10638a3d2bcadf306 | Java | 11,290 | 228 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9b2e6371cab898b60d5e430c54187c7cf9e652cc37eb73630845b68eea82b8c8 | Java | 11,301 | 307 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ff3f605e4ef770f11a9c4a1a291ad21f940a24a56dc6631523a40990f53a019a | Java | 11,343 | 353 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
49c5b74104b91bc45caa52ada5755d6ea3b9113bfbcea6e4f33bcd4c56561b3e | Java | 11,378 | 292 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
49e5873787d9770ec99385e8cebe0bbc7d8008fe8b082ad7e2d6b9943e58f44b | Java | 11,380 | 302 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4c2536c523b4a18cee3dca6e11dc648b96a77214db9393076c6f0592972f3c4b | Java | 11,393 | 258 | package edu.cmu.tetrad.search.harness;
import edu.cmu.tetrad.data.BoxDataSet;
import edu.cmu.tetrad.data.ContinuousVariable;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DoubleDataBox;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.GraphSaveLoadUtils;
import edu.cmu.tetrad.graph.Indep... |
3dc5a20ce96a87990808e20369bfd7e06d31569ffe226b02477d84ae9a00ee6f | Java | 11,429 | 280 | ///////////////////////////////////////////////////////////////////////////////
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
// and Richard Scheines. //
// //
... |
c2f8d66c63ae487b52d299495972c74703054228f84dc5b8eea65e69f3948bf5 | Java | 11,460 | 257 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a1503812dccb245c619ef97765a16849499160c653cd3c9199bb15526136972b | Java | 11,483 | 316 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
14e7cc9d37700cf645a6c5b2fe3c6d2c33ccc49fdbff5e0f3440ed33f10accda | Java | 11,484 | 300 | package edu.cmu.tetrad.search.utils;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.IndependenceFact;
import edu.cmu.tetrad.graph.Node;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.Set;
/**
* <h2>Per-fact effective sample sizes from block structure</h2>
*... |
23f9b6031ad418ecfa476607b69e09359311fa8c43934f6aa5317870c210e287 | Java | 11,484 | 354 | package edu.cmu.tetradapp.app;
import edu.cmu.tetradapp.workbench.DisplayEdge;
import edu.cmu.tetradapp.workbench.PointPair;
import javax.swing.*;
import java.awt.*;
import java.awt.geom.Line2D;
import java.awt.geom.Path2D;
/**
* Presents an edge in the Tetrad SessionWorkbench.
*
* @author josephramsey
*/
final ... |
c843f6de940a994f3fde4822b6d50ae089ad0bb43eb1656a925c47c0e21d0a26 | Java | 11,484 | 335 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1067735a2246a447edcececadebed50bd52da2be6d62da81f7f9fe327ca1dfdd | Java | 11,486 | 310 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
a5758ce72f34f29c4e0fef94ab96d16ec4822ceb42e750e852fa89ced165e228 | Java | 11,487 | 305 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8cf02b1c20527a2d79ad2ef4c3740b5833c017a78931b984d5687234350ccbf9 | Java | 11,496 | 367 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2149772f22c2f6ebc457ddd0c33d10878975c70f87a55a6eed5b1077e14a32ac | Java | 11,528 | 306 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
717f91368d458b18eda0a9af71342394ce312fc7d1c9bdb6613656b314dc2cb9 | Java | 11,537 | 302 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2e8e215d883dc4636ae8f5cf756c6f1b6fbead66bf292ee95368bc89d0f170ce | Java | 11,540 | 233 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
865912998b7cab082a9b2abaa09e1a49e78eba83b0bdf4593c476ab8194352f3 | Java | 11,540 | 250 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
f00436d193ceda84b11bcd2394bd4ab1ce8b6c868cda80ab21e20c287351adbb | Java | 11,546 | 305 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7848e947d702e3613761296913184bf1064a66a8e8c58246e3dafe218cb38179 | Java | 11,548 | 358 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d5be3229ade2e6d81a3c7185e20a207da8f4c337feb92638b857c93d064bbc54 | Java | 11,593 | 316 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
ff952f97c9c15c0d393ff468099d8e8190d0a8f5126325e350ee8f69aee9a41e | Java | 11,612 | 310 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
03fb5849692d81309f471e0bab2d9e31ffa2c1b2c0c366c0084583d6e6303961 | Java | 11,632 | 270 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
4f7e667b35332e26bcf477570c2b2b7de0bb3057819d2656e53c8eb5e2942802 | Java | 11,633 | 317 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
1ac8e3349b0be9f76354eef0df92ae9a1893e801188e73e43cf449feb54d7040 | Java | 11,635 | 311 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
95bae97bf956b3c2b3e8088c233372bfd01cf012458b037e4f88435b288c6176 | Java | 11,644 | 315 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9007f72cccdd5b09fa563242b63da474946209f63d3d36ac3c03f235fd03d3a7 | Java | 11,648 | 392 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
228d9bd06ecbbfe61c4433e470aadf47b9ae1dc74348b95d8c6f912d5b23c57f | Java | 11,654 | 337 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
dd19dd1c77d8c0451bdc9d030c23c136eaec137db34078dd2d0f38e541834691 | Java | 11,702 | 292 | package edu.cmu.tetrad.search.cdnod_pag;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.Knowledge;
import edu.cmu.tetrad.graph.Endpoint;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.TMath;
import edu.cmu.tetrad.util.TetradLogger;
import java.util.*;
i... |
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