sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
2a0120b77bafbbc5bd5f807bcfd91c9d5d384283e957219944ebcc2ea24ef48b | Java | 9,341 | 266 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5702b7d1f07757156b1a4d65284dd41336e8cfa0519f50a39c54288d5a029453 | Java | 9,378 | 196 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
c12aa05ab59a748a68e06606f4dfb089fd2a079546f3400aaaf17d0d4a41f754 | Java | 9,415 | 247 | package edu.cmu.tetrad.algcomparison.independence;
import edu.cmu.tetrad.annotation.General;
import edu.cmu.tetrad.annotation.TestOfIndependence;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DataType;
import edu.cmu.tetrad.search.test.IndependenceTest;
import edu... |
d75958748879a9d5a66ba1c6217bb9c5a606e7999de1d4c27876d683f6c5b8a7 | Java | 9,415 | 293 | package edu.cmu.tetrad.search;
import edu.cmu.tetrad.graph.*;
import org.junit.Test;
import java.util.Set;
import static org.junit.Assert.*;
/**
* Unit tests for OSet (Henckel–Perković–Maathuis O-sets).
*/
public class OSetTest {
/**
* Default constructor for the OSetTest class.
*
* This class... |
620905e7a6779785b6d8bc5b86877c16db3002ab98843bf084c613e3426ae56c | Java | 9,430 | 229 | package edu.cmu.tetrad.search.test;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.IndependenceFact;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.utils.LogUtilsSearch;
import java.io.Closeable;
import java.io.IOException;
import java.util.*;
/*... |
07499755fcb5f22be075abf79419b05797c7b8e666eef5e3a6e2d1219e91307d | Java | 9,434 | 243 | package edu.cmu.tetrad.algcomparison.independence;
import edu.cmu.tetrad.annotation.General;
import edu.cmu.tetrad.annotation.TestOfIndependence;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DataType;
import edu.cmu.tetrad.search.test.IndependenceTest;
import edu... |
623f411e182dc911aa7ac937cd045e80fd0cfa41343863126595e3f67976e4e4 | Java | 9,437 | 259 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3417f971dc7d38f427c67cd38f12bed61a4c08e5de4052b81281d0df05e80be8 | Java | 9,439 | 242 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
b025aafd7017d40d36f0e7ce526fde380c311fa1e37addb75bd83795964b533d | Java | 9,439 | 275 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
9135082f6f2617168d28d608b690c34d69d7ecc23476d58ef5d5119ceb837554 | Java | 9,440 | 250 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
93859ec56e56f1390741f941dc8515ad21cb48c69290a79977092ec33413009e | Java | 9,444 | 234 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
37068a5bd8f15644fce1eef47fb0f48784687fc98a150f6fad42678e996cdd44 | Java | 9,451 | 229 | package edu.cmu.tetrad.search.test;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.IndependenceFact;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.utils.LogUtilsSearch;
import java.io.Closeable;
import java.io.IOException;
import java.util.*;
/*... |
0cb5de6334735c998fea40eb74fe62b359fdfc71a954fdbe63b6b48225dea727 | Java | 9,462 | 224 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9edb31c8cf058e034633582131c770468a2d9c9cd26c5f70cf7693a6228967c6 | Java | 9,482 | 236 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
e27abcf93ec634499e94dfdd2a88f9a07dd455270b67ac0b0e731d9a01c1b923 | Java | 9,487 | 302 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7e28b2b59bf5d80dec58808b9e8c65b0def7ea27fe0b2a7c6b8db94b76aad5e3 | Java | 9,495 | 207 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
085b33791d9821fa99ff73f4588917f773aebf0fe397d14c4aa4954c97ffe5e9 | Java | 9,510 | 270 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
70a2b0f4b2c51a800d1a32680aaf2c4696884158fdd7e6d1117e8c1e35624b88 | Java | 9,528 | 188 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
43e33849a7269e1b6d90adcbf40f1991a343f6c48c6676f9bcb088bc6de516e2 | Java | 9,533 | 251 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
f956fcd4e60bfd7c661b4bccec8a90b40ba0bd237259c14934c3062e8bc91844 | Java | 9,535 | 324 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
dae1fdba589edbf5adb6e1a79a0553f4b98bd9fd6ac34935e25e791c219fc979 | Java | 9,537 | 189 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
63cfea193f24e6723e2942dfbab83fa12ff4ea95dbf386cef2a39ba0af895ea3 | Java | 9,546 | 242 | package edu.cmu.tetradapp.editor.datamanip;
import edu.cmu.tetrad.data.BoxDataSet;
import edu.cmu.tetrad.data.ContinuousVariable;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DoubleDataBox;
import edu.cmu.tetrad.graph.Node;
import org.junit.Test;
import javax.swing.*;
import java.lang.reflect.Field;... |
61d69340c6b82fa4115136cc9f33e78946baa5b15776b80d7aae07150c0223ec | Java | 9,549 | 236 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
dcb4c34aa36598c2848da233bb5272e379ef4d1453378e99f919dbf3f9d9b3e6 | Java | 9,559 | 265 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
bae58658babe5275c7ed2259f136903a2596950299a525f2ac20624c5d110d73 | Java | 9,564 | 221 | // tetrad-lib/src/main/java/edu/cmu/tetrad/hybridcg/HybridCgEstimator.java
package edu.cmu.tetrad.hybridcg;
import edu.cmu.tetrad.data.BoxDataSet;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.hybridcg.HybridCgModel.HybridCgIm;
import edu.cmu.tetrad.hybridcg.HybridCgModel.... |
e590a51b300544bbb6ff797be682b365b7e6ff53320175cdfad05b3bb3b8b066 | Java | 9,577 | 269 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
8477a9b9d76a9a93092764d80f2641cfbf0dbdd5cab423a28381af3a6b08a7fb | Java | 9,579 | 252 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
8f00652c0b542754c0ecfeb3fe60ca0cc8d80e5bcdca4a64258087067f4bdcc5 | Java | 9,582 | 268 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
82d050c868c0007c7630a89b227f63b5da84fcd4733d589bc3eb694ee04ebf35 | Java | 9,587 | 261 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
bcaf4ae21a3590c178aa576a99038994f6926842a3c3b9ae05006c8b7ca34d9c | Java | 9,593 | 223 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9b95422da0f8a404780be3649c3a98c124064dcf88b9546326cf292e7d79a259 | Java | 9,600 | 253 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2a9bbff5cb321be46bf6b7fd623237f760c5ce61a745311908b331acc65354f5 | Java | 9,606 | 253 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
47e43b72712953444de6dd9bb14d61472cf44d313829852d3fd36c2fff62c13e | Java | 9,609 | 280 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
4f51cf28de8affe927dd98ce3b9e2bff4c564c32172337c201caf381c80f36fb | Java | 9,611 | 257 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
8ea624093b1d3fac69175a1199a69289005a65ac55dcfa811a115b9b27182a05 | Java | 9,614 | 216 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
057724d189aeb9b8ba9357afefd6ff589684edb0e150b9a2d0c3acdac538e4a2 | Java | 9,620 | 230 | package edu.cmu.tetrad.algcomparison.score;
import edu.cmu.tetrad.algcomparison.utils.AcceptsKnowledge;
import edu.cmu.tetrad.data.*;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.is.IsBDeuScore;
import edu.cmu.tetrad.search.score.Score;
import edu.cmu.tetrad.data.missing.MissingDataUtils;
import edu.... |
20c876f4fe41bac4de6125cddf92251cf3d46b841e08c49050605f61ea11a819 | Java | 9,626 | 330 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
47056f97af743083cd4e7a9a1189863bfdbcc09db17c025f2184933ed793476e | Java | 9,634 | 246 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d986d5f46737fb70acd63b60e6ea4fa92196914aa632b1db948e10ef342ea574 | Java | 9,635 | 299 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
c790132461957136f0976d8eadc024e48c8a59bddc67d657ab8f4d52cdd09b82 | Java | 9,645 | 331 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3e48ebdabfcf4ea646d930ce2dfe59acb3d1d34ee0357494c29e0eb7992fa65c | Java | 9,650 | 190 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
e073aac55159cced75ab7b35cf351cfd101ea30efdfb9e7919e266bc26f475c8 | Java | 9,651 | 306 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
64bb095c4b473f092f5b2e5772b61f12d40f6a16ba3195bc98758ecfbcc2ab60 | Java | 9,652 | 283 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d369e0ead29e9180ee148f2f701090c1161cb4c5c67eb9bbc9944937c6cfb8c9 | Java | 9,658 | 305 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
6fadb1e722d09c03cbffee3a505007a9d2103da1de67d5e562c4bc5acc10c5e5 | Java | 9,668 | 331 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e414b9eea231cbde196d4bcd0a7e37c458e00894cdca378c80e5faf4e2566f22 | Java | 9,699 | 263 | package edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag;
import edu.cmu.tetrad.algcomparison.algorithm.AbstractBootstrapAlgorithm;
import edu.cmu.tetrad.algcomparison.algorithm.Algorithm;
import edu.cmu.tetrad.algcomparison.algorithm.ReturnsBootstrapGraphs;
import edu.cmu.tetrad.algcomparison.independence.Independ... |
00c6d3a3ec19390d817fd109c23f49c371eeffd2024abd21212707ec00b50c9e | Java | 9,701 | 278 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
18e65308e492b3872d69308ae6cf4571b7d9db14c06467b265a3dcb2a622b190 | Java | 9,715 | 292 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
6715cd5bb97aa3a8859874487667725841fc24d601ae6cdcf936e9fca3f6b86e | Java | 9,718 | 249 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
70da92eb5e82884a800f7afcdb8bce8b7e5e75710dc1e2cb8bcbf3f1b36d814a | Java | 9,743 | 213 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
56fb8de18e27e4373063e5af48d2ad805df1d3f6e9b7df9b4fe460b5a5e3a992 | Java | 9,744 | 303 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
5b6083171d91dc2041830005090e7d9718694bfc02ea35b9431c7dfbc1bc155a | Java | 9,748 | 237 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
bf05c8682b432438c9346f58dba38b3edbde4c17cf35b0f3318fdb2879eb2823 | Java | 9,749 | 254 | package edu.cmu.tetrad.algcomparison.algorithm.oracle.cpdag;
import edu.cmu.tetrad.algcomparison.algorithm.*;
import edu.cmu.tetrad.algcomparison.independence.IndependenceWrapper;
import edu.cmu.tetrad.algcomparison.score.ScoreWrapper;
import edu.cmu.tetrad.algcomparison.utils.AcceptsKnowledge;
import edu.cmu.tetrad.a... |
498d96bb0d2f10b4b04a54a786573d188905bd41efd8971d53cacf70fd06da4e | Java | 9,758 | 286 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
774adfe98bb740db589bd2cd5e7bab90d2a3922325a350921694284058ab2d96 | Java | 9,767 | 263 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
9e1382ffa7c9a2688ec23d812a7807f882c799ad9d41890b0b8107bfc1058d87 | Java | 9,769 | 258 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
317812aa2a7a433c883f2c0cd959cae04e26c3a7bc4a61f53ebaa8b075b36f43 | Java | 9,776 | 237 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
702036a10ac5e9de353da0cf881a4824b8615c507f4d20027f8f7d50918795e5 | Java | 9,789 | 302 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
3298718df0071a8838eb7c7d956f2dc468b92934a03068df219ce0ed9361ba2b | Java | 9,794 | 266 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f545157e0db903849a34fdda4924ac4f96671b7c50ab9c079c4f7e45e0652137 | Java | 9,801 | 216 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
62d06af92358436212e1d275c66893ee5a6a9dffa229260dd3d8fca564624b99 | Java | 9,809 | 198 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d9d1fa363555c2f7c27254165de46fc72820d190f5f0b7bd357d879c2b396a34 | Java | 9,817 | 269 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
13a12253d62756d554b44dea8b5aeb5bd3bb3d9893b3365ad70c12177101c96e | Java | 9,829 | 322 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
2f1f3b6b285cf0d111c19d4585c6f46cf4962afac020fe9e39b80f8c7990f575 | Java | 9,839 | 277 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
a2494f4f5cb3a4f8f1955557ede7afbda0c7044b28815d08df11010e18b77ae3 | Java | 9,839 | 222 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e10b3b0b10c3059d5481182628c7f9dbfe6dc143fd0edff9f74c8a5bec7a660c | Java | 9,851 | 296 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f5430fd72ac8bafaa252f543688ebcd5ddbb20809d184eaeab3fd7021ae51dc3 | Java | 9,853 | 272 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
7974557c8c6e520fc853be208a987faf83b0230c05635c15c8344c7ea5e4d8fb | Java | 9,861 | 252 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
7f53339011e80c795b0e4a6d5be172b197f3e6f2c92b4e4a31891ea2951ae134 | Java | 9,881 | 242 | package edu.cmu.tetrad.algcomparison.independence;
import edu.cmu.tetrad.annotation.General;
import edu.cmu.tetrad.annotation.TestOfIndependence;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DataType;
import edu.cmu.tetrad.search.test.IndependenceTest;
import edu... |
cd5212a4c627cfa8052be7f3eb1292e5f6003bcb5ee1cc48f4722608e4b90af1 | Java | 9,886 | 300 | package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.algcomparison.Comparison;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataModelList;
import edu.cmu.tetrad.data.Knowledge;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.util.JOptionUtils;
import edu.cmu.tetrad.util.Parameters;
impo... |
e80e55e7321a20c460bd8e248c150bd6eb7e47d02a6ee6b22d646fcd989dd2a4 | Java | 9,898 | 207 | package edu.cmu.tetrad.search.harness;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.graph.GraphTransforms;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.graph.RandomGraph;
import edu.cmu.tetrad.search.Boss;
import edu.cmu.tetrad.search.Flop;
import edu.cmu.tetr... |
29ceea32c3eeb0e27c84309b4fdcffcc3b5f9c2ecd64f5c095f22c4b162a9e7b | Java | 9,938 | 252 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
420e22e072d2c84cafc07eb5bfff275f271f567a41618f54fbc65e17e4c87868 | Java | 9,943 | 304 | /*
* Bluetooth IO class.
*
* Much of the code comes from here:
* https://github.com/luugiathuy/Remote-Bluetooth-Android
*
* And here:
* http://developer.android.com/guide/topics/connectivity/bluetooth.html
*
* Hazen 02/14
*/
package edu.harvard.zhuanglab.tma03;
import java.io.IOException;
import ja... |
b38893f309e35576b636f56c1f49e74e91d047e3fb5bf21b8c117675f42e2c2a | Java | 9,958 | 297 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
12f51d49d26310850796cb4376b2f37fb5bce111260b9f3ddbdd8dbfcb24b5e6 | Java | 9,962 | 295 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f12799100098d9ef2a0ab70e86a35f8eb556c97be0723f3b6501fe4332c8b3e2 | Java | 9,986 | 281 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
49de14651c06a36d3289c3fdd5d2489a3dff6d2ac51a4e4e2c3995cc4000985a | Java | 9,991 | 269 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
672aa7a0cb782f8ff5ba23b694b4c1bd7559d19e9f060f7ed08dec6261777f35 | Java | 9,996 | 197 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
f2b94ce833ed3985ed2c3cae8379e1819928012b37e9a6841274d49b6398193e | Java | 10,002 | 232 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
2b27872f1f574587f3312d6cb7c3c79c8294332c804a8ec1998a5d0085038060 | Java | 10,006 | 236 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
8e9f0300a56f32a991e82057aba3fd01e883bef707c648cab27dcb75a774eb90 | Java | 10,011 | 312 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
f2088847428724be9f00f88eda0dc3d95899f48f3bf73ca6396f299cc2e35e69 | Java | 10,011 | 269 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
92fceb043b2661fa43e5d171830066a20ce71ba24baa78d8f5d7bbb62427c196 | Java | 10,014 | 259 | package edu.cmu.tetrad.search.is;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.data.DiscreteVariable;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.search.score.BDeuScore;
import edu.cmu.tetrad.search.score.Score;
import edu.cmu.tetrad.util.TMath;
import java.util.List;
import java.util.Objects... |
5321b930093624eed396acbb678a69e9df80b48d9a806ec5f3d1b963cea60554 | Java | 10,024 | 222 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
e86f904e56163c564929c97232bc8440ab46f85c91d3f848f69b8db962c04c83 | Java | 10,037 | 246 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
de58250a2ef63973cec4b8c357279f0369e61c1426712f462da0a42b55e9660c | Java | 10,074 | 277 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
20da05d47455cf84ba69036eb3b5aa6fb489a0eb54c3ff166d1ade198d73e00d | Java | 10,076 | 213 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
afeb2c38b52ab9e51d5e6da1da02b1f97010cc3b2a31801368a0ea05c824ef29 | Java | 10,084 | 304 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
44188b51715f44d97f5a4944ef86b12fdceb01fc4d76764fc44ae8486f20fc99 | Java | 10,100 | 279 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
718bdac82b9ecae858ac9c9d34bbf1dde179eaaa22fc08497876bc5c437e7c09 | Java | 10,101 | 281 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
2dd867e63d682c2d32d9fe5eff1cee4e9d66a0064d23e29b506573eacd44f10b | Java | 10,128 | 306 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
865f8ba906585b77fc56078efe204cafe83b4820e3c6890d93cdae5156dbbcb4 | Java | 10,128 | 247 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
3b78aeb14a6a1e201eeb35f2df5cfba2bf81fb51cf6b219f5acf80ae93fe6e91 | Java | 10,130 | 206 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
cfcd6d46606135338466c913d414f1335ad3744641a692eac0926b1c937b132e | Java | 10,185 | 193 | /// ////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //... |
2d05e480256cf58e60d4e6502701a404a80bc470d73d175831329420ec2a11e2 | Java | 10,187 | 313 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
03ebacf73e08e778c3ce0bdc0bcd19bf19e8984ad126844f44269f6a90e253eb | Java | 10,191 | 270 | /*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2010 - 2026 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of ... |
69c577c3b090f9e80f6e9b1e16a733342680c605af9e09043b973306d16f887b | Java | 10,221 | 248 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2026 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
d45d43de572124f11b116ccbf6fef8e50583f5b291376b458de7d445c7978fac | Java | 10,221 | 303 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
33b4401fc518f43ab6d46077059d8324ec1707402eb8e13d63f782a540a7d837 | Java | 10,232 | 280 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
bf755c6db6b78cbcfdb9b123a365ac4c0664a2f74b96ce4fef97b776136dc9ec | Java | 10,275 | 317 | ///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// //
// Copyright (C) 2025 by Joseph Ramsey, Peter Spirtes, Clark Glymour, //
... |
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