repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
wbinventor/openmc | openmc/tallies.py | 1 | 125001 | from collections.abc import Iterable, MutableSequence
import copy
import re
from functools import partial, reduce
from itertools import product
from numbers import Integral, Real
import operator
from pathlib import Path
import warnings
from xml.etree import ElementTree as ET
import numpy as np
import pandas as pd
impo... | mit |
eickenberg/scikit-learn | sklearn/metrics/tests/test_common.py | 1 | 41322 | from __future__ import division, print_function
import numpy as np
from functools import partial
from itertools import product
from sklearn.datasets import make_multilabel_classification
from sklearn.preprocessing import LabelBinarizer, MultiLabelBinarizer
from sklearn.utils.multiclass import type_of_target
from skle... | bsd-3-clause |
CoucheLimite/LifetimeSpectroscopy | IDLSanalyzer_dpss.py | 1 | 51278 | import numpy as np
import sys
import os
import time as tm
from PyQt5.QtWidgets import QApplication, QMainWindow, QFileDialog, QListWidgetItem, QLineEdit, QLabel, QRadioButton, QGridLayout, QPushButton, QAction, QActionGroup, QMenu, QInputDialog, qApp, QVBoxLayout
from PyQt5 import QtGui, QtWidgets
from PyQt5.QtCo... | mit |
JoshuaW1990/bus_arrival_prediction | implementation/baseline.py | 1 | 30823 | """
Calculate and assess the estimated arrival time with different baseline algorithm
"""
# import modules
import pandas as pd
import os
from datetime import timedelta, datetime
#################################################################################################################
# help... | mit |
pratapvardhan/pandas | pandas/tseries/offsets.py | 1 | 78953 | # -*- coding: utf-8 -*-
from datetime import date, datetime, timedelta
import functools
import operator
from pandas.compat import range
from pandas import compat
import numpy as np
from pandas.core.dtypes.generic import ABCPeriod
from pandas.core.tools.datetimes import to_datetime
import pandas.core.common as com
# ... | bsd-3-clause |
CGATOxford/CGATPipelines | obsolete/pipeline_metagenomecommunities.py | 1 | 81942 | """
=====================================================
Community analysis of metgenomic shotgun sequencing
=====================================================
Pipeline_metagenomecommunities.py takes as input a set of fastq
files from a shotgun sequencing experiment of environmental samples
and assesses community... | mit |
uber/ludwig | tests/integration_tests/test_visualization.py | 1 | 70179 | # -*- coding: utf-8 -*-
# Copyright (c) 2019 Uber Technologies, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... | apache-2.0 |
bamueh/dark-matter | dark/proteins.py | 1 | 36429 | from __future__ import division, print_function
import os
import re
from os.path import dirname, join
from operator import itemgetter
from six.moves.urllib.parse import quote
import numpy as np
from textwrap import fill
from collections import Counter
import matplotlib
matplotlib.use('PDF')
import matplotlib.pyplot a... | mit |
cacraig/wxDataGetters | wxdatagetters/objects/coltbls.py | 1 | 32875 | #!/usr/bin/python
# Working script to generate maps from wrfout netCDF files
# using matplot lib with basemap
# Basemap coding from David John Gagne II
# Written by Luke Madaus for use with operational WRF domains
from matplotlib.colors import LinearSegmentedColormap
def RdBufloat(valrange):
# Will define ... | mit |
cbertinato/pandas | pandas/tests/generic/test_generic.py | 1 | 32142 | from copy import copy, deepcopy
import numpy as np
import pytest
from pandas.core.dtypes.common import is_scalar
import pandas as pd
from pandas import DataFrame, MultiIndex, Series, date_range
import pandas.util.testing as tm
from pandas.util.testing import assert_frame_equal, assert_series_equal
# ---------------... | bsd-3-clause |
pylayers/pylayers | pylayers/mobility/ban/body.py | 1 | 97549 | # -*- coding:Utf-8 -*-
"""
Body Class
===========
This class implements the body model
.. autoclass:: Body
:members:
Cylinder Class
==============
.. autoclass:: Cylinder
:members:
"""
#import mayavi.mlab as mlab
import os
import sys
import copy
import numpy as np
import scipy.stats as sp
if sys.version... | mit |
LCAV/linvpy | linvpy.py | 1 | 38909 | from __future__ import division
import numpy as np
__author__ = 'GuillaumeBeaud'
# Abstract class for loss functions so they share the same interface and all
# have the rho, psi, weights functions
class LossFunction:
def __init__(self, clipping=None): # Constructor of the class
if clipping is not None:... | bsd-2-clause |
boomsbloom/dtm-fmri | DTM/for_gensim/lib/python2.7/site-packages/matplotlib/lines.py | 1 | 50416 | """
This module contains all the 2D line class which can draw with a
variety of line styles, markers and colors.
"""
# TODO: expose cap and join style attrs
from __future__ import (absolute_import, division, print_function,
unicode_literals)
from matplotlib.externals import six
import warning... | mit |
credp/lisa | lisa/stats.py | 1 | 44603 | # SPDX-License-Identifier: Apache-2.0
#
# Copyright (C) 2020, Arm Limited and contributors.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# ... | apache-2.0 |
CODEJIN/HNet_on_Tensorflow | HNet_GUI.py | 1 | 278841 | ###############################################################################
# HNet GUI
# Copyright (C) 2016-2017 Heejo You
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either versi... | apache-2.0 |
cython-testbed/pandas | pandas/tests/test_base.py | 1 | 46347 | # -*- coding: utf-8 -*-
from __future__ import print_function
import re
import sys
from datetime import datetime, timedelta
import pytest
import numpy as np
import pandas as pd
import pandas.compat as compat
from pandas.core.dtypes.common import (
is_object_dtype, is_datetimetz, is_datetime64_dtype,
needs_i8_... | bsd-3-clause |
teoliphant/numpy-refactor | numpy/linalg/linalg.py | 1 | 60661 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
bluerover/6lbr | examples/6lbr/test/postprocessing/pp_plot_smartbridgeauto.py | 1 | 44000 | from pylab import *
import re
import math
import inspect
from pp_utils import *
def scatterplot_SmartBridgeAuto_separate(results):
print "scatterplot_SmartBridgeAuto_separate"
data = {}
#dictionary data['Sxxxx']['delay'] = {'x':[], 'y',[]}
results = sorted(results, key=lambda k: k.topology)
nc... | bsd-3-clause |
GuessWhoSamFoo/pandas | pandas/io/json/json.py | 1 | 33657 | # pylint: disable-msg=E1101,W0613,W0603
from itertools import islice
import os
import numpy as np
import pandas._libs.json as json
from pandas._libs.tslibs import iNaT
from pandas.compat import StringIO, long, to_str, u
from pandas.errors import AbstractMethodError
from pandas.core.dtypes.common import is_period_dty... | bsd-3-clause |
BryanCutler/spark | python/pyspark/pandas/base.py | 1 | 72312 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
Winand/pandas | pandas/tests/reshape/test_merge.py | 1 | 64631 | # pylint: disable=E1103
import pytest
from datetime import datetime, date
from numpy.random import randn
from numpy import nan
import numpy as np
import random
import pandas as pd
from pandas.compat import lrange, lzip
from pandas.core.reshape.concat import concat
from pandas.core.reshape.merge import merge, MergeErr... | bsd-3-clause |
rhiever/tpot | tests/tpot_tests.py | 1 | 82897 | # -*- coding: utf-8 -*-
"""This file is part of the TPOT library.
TPOT was primarily developed at the University of Pennsylvania by:
- Randal S. Olson (rso@randalolson.com)
- Weixuan Fu (weixuanf@upenn.edu)
- Daniel Angell (dpa34@drexel.edu)
- and many more generous open source contributors
TPOT is f... | lgpl-3.0 |
Quantipy/quantipy | quantipy/core/view_generators/view_specs.py | 1 | 40824 | import pandas as pd
from quantipy.core.tools.qp_decorators import modify
from collections import OrderedDict
from itertools import chain
from operator import add, sub, mul, div
import re
import warnings
class ViewManager(object):
def __init__(self, stack):
self.stack = stack
self.basics = None
... | mit |
cbertinato/pandas | pandas/tests/arithmetic/test_period.py | 1 | 47073 | # Arithmetic tests for DataFrame/Series/Index/Array classes that should
# behave identically.
# Specifically for Period dtype
import operator
import numpy as np
import pytest
from pandas._libs.tslibs.period import IncompatibleFrequency
from pandas.errors import PerformanceWarning
import pandas as pd
from pandas impo... | bsd-3-clause |
BoldingBruggeman/gotm | gui.py/xmlplot/common.py | 1 | 59700 | #$Id: common.py,v 1.49 2010-12-29 12:13:04 jorn Exp $
# Import modules from standard Python library
import sys,os.path,UserDict,re,xml.dom.minidom,datetime
# Import additional third party modules
import numpy
import xmlstore.xmlstore
def get_py2exe_datafiles():
from distutils.filelist import findall
def add... | gpl-2.0 |
ChyLau/weviation | weviation/old/notebook_icon.py | 1 | 57877 | import wx
import methods
import parse as p
import numpy as np
import matplotlib
from matplotlib.figure import Figure
from matplotlib.backends.backend_wxagg import FigureCanvasWxAgg as FigureCanvas
from matplotlib import cm
class TabTorenbeek(wx.ScrolledWindow):
def __init__(self, parent):
""""""
wx... | gpl-2.0 |
LeiDai/meep_metamaterials | meep_utils_tmp.py | 1 | 37407 | #!/usr/bin/env python
#coding:utf8
"""
Here you can find various functions and classes that facilitate the work with python-meep.
I believe some of these functions ought to be implemented in the meep module.
Filip Dominec 2012-2013
"""
import numpy as np
import os, os.path, sys, subprocess, time
from scipy.constants i... | mit |
chrisbarber/dask | dask/utils.py | 1 | 30069 | from __future__ import absolute_import, division, print_function
import codecs
import functools
import inspect
import io
import math
import os
import re
import shutil
import struct
import sys
import tempfile
from errno import ENOENT
from collections import Iterator
from contextlib import contextmanager
from importlib ... | bsd-3-clause |
idaholab/raven | framework/Models/Code.py | 1 | 48291 | # Copyright 2017 Battelle Energy Alliance, LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed t... | apache-2.0 |
azjps/bokeh | bokeh/core/tests/test_properties.py | 1 | 61077 | from __future__ import absolute_import
import datetime
import unittest
import numpy as np
import pandas as pd
from copy import copy
from bokeh.core.properties import (
HasProps, NumberSpec, ColorSpec, Bool, Int, Float, Complex, String,
Regex, Seq, List, Dict, Tuple, Array, Instance, Any, Interval, Either,
... | bsd-3-clause |
CCS-Lab/hBayesDM | Python/hbayesdm/base.py | 1 | 32878 | import multiprocessing
import os
import pickle
import tempfile
import warnings
from abc import ABCMeta, abstractmethod
from collections import OrderedDict
from pathlib import Path
from typing import Any, Callable, Dict, List, Sequence, Tuple, Union
import arviz as az
import matplotlib.pyplot as plt
import numpy as np
... | gpl-3.0 |
drmaize/ThermoAlign | TA_codes/PSE.py | 1 | 36230 | ### PSE: Primer Specificity Evaluation (PSE) algorithm; a part of Thermo-Align tool for the design of template specific hybridization and priming oligonucleotides
### Version 1.0.0: 06/28/2016
### Authors: Felix Francis (felixfrancier@gmail.com); Randall J. Wisser (rjw@udel.edu)
######################################... | gpl-3.0 |
GuessWhoSamFoo/pandas | pandas/tests/dtypes/test_dtypes.py | 1 | 32521 | # -*- coding: utf-8 -*-
import re
import numpy as np
import pytest
from pandas.core.dtypes.common import (
is_bool_dtype, is_categorical, is_categorical_dtype,
is_datetime64_any_dtype, is_datetime64_dtype, is_datetime64_ns_dtype,
is_datetime64tz_dtype, is_datetimetz, is_dtype_equal, is_interval_dtype,
... | bsd-3-clause |
dgary50/eovsa | sf_display.py | 1 | 106577 | #!/usr/bin/env python
#
# History:
# 2014-Dec-09 DG
# Started this history log. The PCapture window was slowing taking longer
# and longer to refresh, as more plots were added. Now explicitly clears
# the plot before plotting a new one.0
# 2014-Dec-13 DG
# Added text and highlight if ND is on.
#... | gpl-2.0 |
dereneaton/ipyrad | ipyrad/analysis/baba.py | 1 | 40715 | #!/usr/bin/env python
""" D-statistic calculations """
# pylint: disable=E1101
# pylint: disable=F0401
# pylint: disable=W0142
# pylint: disable=R0915
# pylint: disable=R0914
# pylint: disable=R0912
from __future__ import print_function, division
from ipyrad.assemble.write_outputs import reftrick
from ipyrad.assembl... | gpl-3.0 |
msimet/Stile | stile/sys_tests.py | 1 | 122908 | """
sys_tests.py: Contains the class definitions of the Stile systematics tests.
"""
"""
This file contains some code from the AstroML package (http://github.com/astroML/astroML).
For that code:
Copyright (c) 2012-2013, Jacob Vanderplas
All rights reserved.
Redistribution and use in source and binary forms, with or ... | bsd-3-clause |
nkhuyu/SFrame | oss_src/unity/python/sframe/data_structures/sframe.py | 1 | 211694 | """
This module defines the SFrame class which provides the
ability to create, access and manipulate a remote scalable dataframe object.
SFrame acts similarly to pandas.DataFrame, but the data is completely immutable
and is stored column wise on the GraphLab Server side.
"""
'''
Copyright (C) 2015 Dato, Inc.
All righ... | bsd-3-clause |
maropu/spark | python/pyspark/pandas/generic.py | 1 | 104806 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
tdaylan/tdgu | wasp0121/main.py | 1 | 53624 | import os, sys
import numpy as np
import scipy
import scipy.interpolate
from scipy.interpolate import UnivariateSpline
from scipy.signal import lombscargle
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
import matplotlib
import seaborn as sns
from astropy import constants as c
# allesfitter
... | mit |
CodingCat/mxnet | python/mxnet/model.py | 1 | 41424 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
ageron/tensorflow | tensorflow/tools/compatibility/renames_v2.py | 1 | 56576 | # Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
ivastar/clear | clear_grizli_pipeline.py | 1 | 31233 | #! /usr/bin/env python
""" Grizli pipeline for the CLEAR collaboration.
Author:
C.M. Gosmeyer, Aug. 2017
Use:
>>> python clear_grizli_pipeline.py
--fields : (optional) By default all pointings. Or choose from
[GS1, GS2, GS3, GS4, GS5, ERSPRIME, GN1, GN2, GN3, GN4, GN5, GN7]
--steps : (... | mit |
mdepasca/miniature-adventure | utilities.py | 1 | 33644 | """
Implementation of general use functions.
"""
import numpy as np
import numpy.ma as ma
import pandas as pd
from pandas import DataFrame
import cPickle
import gzip
import GPy
import classes
import time
import os
from os import path
import argparse
import matplotlib.pyplot as plt
from cStringIO import StringIO
import ... | unlicense |
trevisanj/f311 | f311/hapi.py | 1 | 561633 | # -*- coding: utf-8 -*-
'''
This module provides an access to the HITRAN data.
Data is downloaded and cached.
This module serves as a simple database manager frontend.
API is aimed to be RESTful, which means that interaction
between local API and remote data-server will be held
via sending RESTful queries (API->rem... | gpl-3.0 |
toobaz/pandas | pandas/core/internals/blocks.py | 1 | 109175 | from datetime import date, datetime, timedelta
import functools
import inspect
import re
from typing import Any, List
import warnings
import numpy as np
from pandas._libs import NaT, Timestamp, lib, tslib, tslibs
import pandas._libs.internals as libinternals
from pandas._libs.tslibs import Timedelta, conversion
from ... | bsd-3-clause |
tedmeeds/tcga_encoder | tcga_encoder/models/survival_analysis.py | 1 | 58512 | from tcga_encoder.utils.helpers import *
from tcga_encoder.definitions.locations import *
import sklearn
from sklearn.cluster import KMeans, SpectralClustering
from sklearn.model_selection import KFold
from tcga_encoder.models.lda import LinearDiscriminantAnalysis
from sklearn.discriminant_analysis import LinearDiscrim... | mit |
JRosenfeldIntern/data-assistant | UnitTests/test_stage.py | 1 | 34381 | import functools
import pathlib
import sys
import traceback
import unittest
import xml.etree.ElementTree as ET
import zipfile
from inc_datasources import _XMLMethodNames, _localWorkspace, _outputDirectory, _daGPTools
sys.path.insert(0, _daGPTools)
import arcpy
import pandas as pd
import tempfile
from scripts import d... | apache-2.0 |
sonidosmutantes/apicultor | apicultor/emotion/MusicEmotionMachine.py | 1 | 56684 | #! /usr/bin/env python3
# -*- coding: utf-8 -*-
from ..utils.dj import *
from ..machine_learning.cross_validation import *
from ..gradients.descent import SGD
from ..constraints.bounds import dsvm_low_a as la
from ..constraints.bounds import dsvm_high_a as ha
from ..constraints.bounds import es
from ..constraints.temp... | gpl-3.0 |
meteoswiss-mdr/precipattractor | pymodules/ssft.py | 1 | 59147 | #!/usr/bin/env python
from __future__ import division
from __future__ import print_function
import numpy as np
import matplotlib.pyplot as plt
import sys
import os
import time
import pickle
import radialprofile
import cv2
import scipy as sp
from scipy import fftpack
from scipy.ndimage.interpolation import rotate
f... | gpl-3.0 |
chemelnucfin/tensorflow | tensorflow/contrib/metrics/python/ops/metric_ops_test.py | 1 | 282705 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
rtaubes/py-ssa | py/ssa.py | 1 | 42675 | #!/usr/bin/env python
import os.path
import sys
import argparse
import logging
# sys.path.append(os.path.join(sys.path[0], "modules"))
import modules.pssa as pssa
import numpy as np
import pylab as p
from coeff_dlg import CoeffDlg
from PyQt5 import QtWidgets, QtCore, QtWidgets
from PyQt5.QtCore import pyqtSignal # ,... | gpl-2.0 |
wateraccounting/wa | Sheets/sheet2.py | 1 | 52082 | # -*- coding: utf-8 -*-
"""
Authors: Gonzalo Espinoza
UNESCO-IHE 2016
Contact: g.espinoza@unesco-ihe.org
Repository: https://github.com/wateraccounting/wa
Module: Sheets/sheet2
"""
import os
import pandas as pd
import subprocess
import time
import xml.etree.ElementTree as ET
def create_sheet2(basin, period,... | apache-2.0 |
ainafp/nilearn | nilearn/group_sparse_covariance.py | 1 | 42396 | """
Implementation of algorithm for sparse multi-subjects learning of Gaussian
graphical models.
"""
# Authors: Philippe Gervais
# License: simplified BSD
import warnings
import collections
import operator
import itertools
import numpy as np
import scipy.linalg
import sklearn.cross_validation
import sklearn.covarian... | bsd-3-clause |
TimoRoth/oggm | oggm/workflow.py | 1 | 36367 | """Wrappers for the single tasks, multi processor handling."""
# Built ins
import logging
import os
import shutil
from collections.abc import Sequence
# External libs
import multiprocessing
import numpy as np
import pandas as pd
from scipy import optimize as optimization
# Locals
import oggm
from oggm import cfg, task... | bsd-3-clause |
Balandat/pyDR | pyDR/simulation.py | 1 | 33445 | """
Functions for running a large number of simulations.
@author: Maximilian Balandat
@date Aug 13, 2016
"""
import os
import numpy as np
import pandas as pd
import logging
import logging.config
# logutils package required as QueueHandler/Listener not available <3.2
import logutils.queue
from pyDR.dynamic_models imp... | mit |
gbrammer/pygrism | catalogs.py | 2 | 80285 | """
Work with v1.6 catalogs
"""
import os
#import pyfits
import astropy.io.fits as pyfits
import numpy as np
import glob
import shutil
import re
import time
import matplotlib.pyplot as plt
# from matplotlib.figure import Figure
# from matplotlib.backends.backend_agg import FigureCanvasAgg
import threedhst
import t... | mit |
colour-science/colour | colour/colorimetry/spectrum.py | 1 | 101297 | # -*- coding: utf-8 -*-
"""
Spectrum
========
Defines the classes and objects handling spectral data computations:
- :class:`colour.SPECTRAL_SHAPE_DEFAULT`
- :class:`colour.SpectralShape`
- :class:`colour.SpectralDistribution`
- :class:`colour.MultiSpectralDistributions`
- :func:`colour.colorimetry.sds_and_... | bsd-3-clause |
springcoil/pymc3 | pymc3/distributions/continuous.py | 1 | 69775 | """
pymc3.distributions
A collection of common probability distributions for stochastic
nodes in PyMC.
"""
from __future__ import division
import numpy as np
import theano.tensor as tt
from scipy import stats
from scipy.interpolate import InterpolatedUnivariateSpline
import warnings
from pymc3.theanof import floatX... | apache-2.0 |
boomsbloom/dtm-fmri | DTM/for_gensim/lib/python2.7/site-packages/matplotlib/backends/backend_wx.py | 1 | 63109 | """
A wxPython backend for matplotlib, based (very heavily) on
backend_template.py and backend_gtk.py
Author: Jeremy O'Donoghue (jeremy@o-donoghue.com)
Derived from original copyright work by John Hunter
(jdhunter@ace.bsd.uchicago.edu)
Copyright (C) Jeremy O'Donoghue & John Hunter, 2003-4
License: This work ... | mit |
aolindahl/aolPyModules | tof.py | 1 | 31988 | #from setupEnvironment import *
import numpy as np
from configuration import loadConfiguration, load_configuration_dict
import time
import wiener
from scipy.sparse import coo_matrix
import sys
import simplepsana
import aolUtil
_useWavelet = True
if _useWavelet:
try:
from wavelet_filter import wavelet_filt... | gpl-2.0 |
AustereCuriosity/astropy | astropy/nddata/utils.py | 1 | 34169 | # Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This module includes helper functions for array operations.
"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
from copy import deepcopy
import numpy as np
from .decorators import support_... | bsd-3-clause |
JamesSample/simple_hydropower_model | changing_hydropower_potential.py | 1 | 39193 | #------------------------------------------------------------------------------
# Name: changing_hydropower_potential_github.py
# Purpose: Estimate climate change impacts on hydropower potential using
# Future Flows catchment level summaries.
#
# Author: James Sample
#
# Created:
# Cop... | mit |
larsmans/scipy | scipy/signal/ltisys.py | 3 | 82449 | """
ltisys -- a collection of classes and functions for modeling linear
time invariant systems.
"""
from __future__ import division, print_function, absolute_import
#
# Author: Travis Oliphant 2001
#
# Feb 2010: Warren Weckesser
# Rewrote lsim2 and added impulse2.
# Aug 2013: Juan Luis Cano
# Rewrote abcd_normaliz... | bsd-3-clause |
chrsrds/scikit-learn | sklearn/preprocessing/data.py | 2 | 110939 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Eric Martin <eric@ericmart.in>
# Giorgio Patrini <giorgio.patrini@anu.edu.au>
# ... | bsd-3-clause |
RNAer/qiita | qiita_db/metadata_template/test/test_prep_template.py | 1 | 65202 | # -----------------------------------------------------------------------------
# Copyright (c) 2014--, The Qiita Development Team.
#
# Distributed under the terms of the BSD 3-clause License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
mick-d/nipype | nipype/algorithms/confounds.py | 1 | 45521 | # -*- coding: utf-8 -*-
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
'''
Algorithms to compute confounds in :abbr:`fMRI (functional MRI)`
Change directory to provide relative paths for doctests
>>> import os
>>> filepath = os.path.dirname... | bsd-3-clause |
haijieg/SFrame | oss_src/unity/python/sframe/test/test_sarray.py | 1 | 113527 | # -*- coding: utf-8 -*-
'''
Copyright (C) 2015 Dato, Inc.
All rights reserved.
This software may be modified and distributed under the terms
of the BSD license. See the LICENSE file for details.
'''
from ..data_structures.sarray import SArray
from ..util.timezone import GMT
from . import util
import binascii
import p... | bsd-3-clause |
BryanCutler/spark | python/pyspark/pandas/groupby.py | 1 | 109171 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
winklerand/pandas | pandas/tests/io/formats/test_format.py | 1 | 103145 | # -*- coding: utf-8 -*-
"""
Test output formatting for Series/DataFrame, including to_string & reprs
"""
from __future__ import print_function
import re
import pytz
import dateutil
import itertools
from operator import methodcaller
import os
import sys
import warnings
from datetime import datetime
import pytest
im... | bsd-3-clause |
scholer/cadnano2.5 | cadnano/part/nucleicacidpart.py | 2 | 139590 | # -*- coding: utf-8 -*-
import math
from ast import literal_eval
from bisect import bisect_left
from collections import (
defaultdict,
deque
)
from heapq import (
heapify,
heappush,
nsmallest
)
from itertools import count as icount
from typing import (
Iterable,
Tuple,
Union,
List,
... | mit |
ceos-seo/data_cube_utilities | data_cube_utilities/plotter_utils.py | 1 | 126610 | from collections import OrderedDict
import re
import copy
import numpy as np
import pandas as pd
import xarray as xr
import matplotlib as mpl
import matplotlib.patches as mpatches
import matplotlib.pyplot as plt
from matplotlib.ticker import FuncFormatter
from matplotlib.colors import LinearSegmentedColormap
import ti... | apache-2.0 |
siddharthteotia/arrow | python/pyarrow/parquet.py | 1 | 37750 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
ibamacsr/sentinelsat | tests/test_mod.py | 1 | 31926 | import hashlib
import textwrap
from datetime import date, datetime, timedelta
from os import environ
import geojson
import py.path
import pytest
import requests_mock
from sentinelsat import InvalidChecksumError, SentinelAPI, SentinelAPIError, geojson_to_wkt, read_geojson
from sentinelsat.sentinel import _format_query... | agpl-3.0 |
chunweiyuan/xarray | xarray/tests/test_combine.py | 1 | 30096 | from collections import OrderedDict
from copy import deepcopy
from itertools import product
import numpy as np
import pandas as pd
import pytest
from xarray import DataArray, Dataset, Variable, auto_combine, concat
from xarray.core.combine import (
_auto_combine, _auto_combine_1d, _auto_combine_all_along_first_di... | apache-2.0 |
Quantiacs/quantiacs-python | quantiacsToolbox/quantiacsToolbox.py | 1 | 61202 | from __future__ import (print_function, absolute_import)
import traceback
import json
import imp
import requests
import webbrowser
import re
import datetime
import time
import inspect
import os
import os.path
import sys
import itertools
from copy import deepcopy
import multiprocessing
import shelve
import pickle
impo... | mit |
iainkirkpatrick/A-vs-B | AB_Class.py | 1 | 122585 | #-------------------------------------------------------------------------------
# Name: AB_Class.py
# Purpose: Classes for methods to be called for accessing the
# SQLite3 database built in AB_GTFStoSQL.py, visualising it, and
# performing analysis on it.
# V... | gpl-3.0 |
cython-testbed/pandas | pandas/tests/series/test_operators.py | 1 | 35182 | # coding=utf-8
# pylint: disable-msg=E1101,W0612
import pytest
from datetime import datetime, timedelta
import operator
from numpy import nan
import numpy as np
import pandas as pd
from pandas import (Index, Series, DataFrame, isna, bdate_range,
NaT, date_range, timedelta_range, Categorical)
fro... | bsd-3-clause |
matthewghgriffiths/nestedbasinsampling | nestedbasinsampling/graphs/disconnectivitygraphs.py | 1 | 61736 |
from itertools import chain, izip, groupby
from math import exp, log, sqrt
import numpy as np
from scipy.special import gammaln
from scipy.integrate import quad
import networkx as nx
import matplotlib.pyplot as plt
from nestedbasinsampling.disconnectivitydatabase import \
Minimum, Replica, Run, Database
from... | gpl-3.0 |
lucidfrontier45/scikit-learn | sklearn/cross_validation.py | 1 | 48860 | """
The :mod:`sklearn.cross_validation` module includes utilities for cross-
validation and performance evaluation.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# License: BSD Style.
from _... | bsd-3-clause |
NixaSoftware/CVis | venv/lib/python2.7/site-packages/pandas/core/internals.py | 1 | 192094 | import warnings
import copy
from warnings import catch_warnings
import inspect
import itertools
import re
import operator
from datetime import datetime, timedelta, date
from collections import defaultdict
from functools import partial
import numpy as np
from pandas.core.base import PandasObject
from pandas.core.dtyp... | apache-2.0 |
STANDFIRE/standfire | apps/STANDFIRE_v1.1/fuels.py | 1 | 50383 | #!python2
################################################################################
#----------#
# fuels.py #
#----------#
"""
This module is the interface to FVS. Given a FVS variant name, a keyword file
and the corresponding tree file, a user can run an FVS simulation
(``Fvsfuels class``) and request various ... | gpl-3.0 |
Huyston/WillNotebook | main.py | 1 | 48197 | import cherrypy
import random
from cherrypy.lib.static import serve_file
import os
from io import StringIO
from subprocess import call
import sys
import dill as pickle
#import pickle
try:
from sympy import latex
except:
print('No sympy installed')
def msg(msg):
return '<font class="msg dontprint">'+msg+'<... | gpl-2.0 |
jaeilepp/mne-python | mne/viz/raw.py | 1 | 50018 | """Functions to plot raw M/EEG data."""
from __future__ import print_function
# Authors: Eric Larson <larson.eric.d@gmail.com>
# Jaakko Leppakangas <jaeilepp@student.jyu.fi>
#
# License: Simplified BSD
import copy
from functools import partial
from warnings import warn
import numpy as np
from ..externals.s... | bsd-3-clause |
dsm054/pandas | pandas/tests/indexes/datetimes/test_date_range.py | 1 | 30998 | """
test date_range, bdate_range construction from the convenience range functions
"""
from datetime import datetime, time, timedelta
import numpy as np
import pytest
import pytz
from pytz import timezone
import pandas.compat as compat
from pandas.errors import OutOfBoundsDatetime
import pandas.util._test_decorators... | bsd-3-clause |
dialounke/pylayers | pylayers/network/network.py | 1 | 63165 | # -*- coding:Utf-8 -*-
"""
.. currentmodule:: pylayers.network.network
Node Class
==========
.. autoclass:: Node
:members:
Network Class
==============
.. autoclass: Network
:members:
PNetwork Class
==============
SimPy Process compliant version of the Network class
.. autoclass:: PNetwork
:members... | mit |
mistercrunch/panoramix | superset/utils/pandas_postprocessing.py | 2 | 32031 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
petercable/xray | xray/test/test_backends.py | 1 | 42555 | from io import BytesIO
from threading import Lock
import contextlib
import itertools
import os.path
import pickle
import shutil
import tempfile
import unittest
import sys
import numpy as np
import pandas as pd
import xray
from xray import Dataset, open_dataset, open_mfdataset, backends, save_mfdataset
from xray.backe... | apache-2.0 |
guilgautier/DPPy | dppy/intermediate_sampling.py | 1 | 46087 | # MIT License
#
# Copyright (c) 2020 Laboratory for Computational and Statistical Learning
#
# authors: Daniele Calandriello
# email: daniele.calandriello@iit.it
# Website: http://lcsl.mit.edu
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentati... | mit |
gkc1000/pyscf | pyscf/nao/nao.py | 1 | 34884 | from __future__ import print_function, division
import sys, numpy as np
from numpy import require
from timeit import default_timer as timer
from scipy.spatial.distance import cdist
from scipy.sparse import coo_matrix
from pyscf.nao.m_color import color as bc
from pyscf.nao.m_system_vars_dos import system_vars_dos, s... | apache-2.0 |
slundberg/shap | shap/explainers/_tree.py | 1 | 92486 | import numpy as np
import scipy.special
import multiprocessing
import sys
import json
import os
import struct
import itertools
from distutils.version import LooseVersion
from ._explainer import Explainer
from ..utils import assert_import, record_import_error, safe_isinstance
from ..utils._legacy import DenseData
from .... | mit |
linebp/pandas | pandas/tseries/offsets.py | 1 | 95558 | from datetime import date, datetime, timedelta
from pandas.compat import range
from pandas import compat
import numpy as np
from pandas.core.dtypes.generic import ABCSeries, ABCDatetimeIndex, ABCPeriod
from pandas.core.tools.datetimes import to_datetime, normalize_date
from pandas.core.common import AbstractMethodErro... | bsd-3-clause |
tkcroat/Augerquant | Modules/Auger_batch_import_functions.py | 1 | 85040 | # -*- coding: utf-8 -*-
"""
Created on Tue Apr 5 12:51:54 2016
@author: tkc
"""
import re, struct, os, glob # already run with functions
import pandas as pd
from PIL import Image, ImageDraw, ImageFont # needed for jpg creation
import numpy as np # needed for image arrays
# no need to clean or find/replace f... | mit |
TUT-ARG/sed_vis | sed_vis/visualization.py | 1 | 54744 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Visualization
==================
This is module contains a simple visualizer to show event lists along with the audio.
The visualizer can show multiple event lists for the same reference audio allowing the
comparison of the reference and estimated event lists.
.. imag... | mit |
anisyonk/pilot | RunJob.py | 1 | 95116 | # Class definition:
# RunJob
# This is the main RunJob class; RunJobEvent etc will inherit from this class
# Note: at the moment, this class is essentially the old runJob module turned object oriented.
# The class will later become RunJobNormal, ie responible for running normal PanDA jobs.
# At th... | apache-2.0 |
springcoil/pymc3 | pymc3/model.py | 1 | 49549 | import collections
import functools
import itertools
import threading
import six
import numpy as np
import scipy.sparse as sps
import theano.sparse as sparse
from theano import theano, tensor as tt
from theano.tensor.var import TensorVariable
from pymc3.theanof import set_theano_conf
import pymc3 as pm
from pymc3.mat... | apache-2.0 |
tomevans/linvb | linvb/vbr_routines.py | 1 | 40963 | import numpy as np
import scipy.special
import scipy.linalg
import vbr_utilities
import time
import pdb
import copy
import matplotlib.pyplot as plt
import sys
# TO DO: Check that the fixed Gamma hyper-hyperpriors that I use are appropriately uninformative...
##########################################################... | gpl-2.0 |
forestdussault/olc_webportalv2 | olc_webportalv2/new_multisample/tasks.py | 1 | 32336 | import pandas as pd
import csv
import pandas_highcharts
import zipfile
import glob
import os
import json
import multiprocessing
from subprocess import Popen, check_output
from background_task import background
from olc_webportalv2.new_multisample.models import ProjectMulti, Sample, SendsketchResult, GenesipprResults, ... | mit |
dwweiss/pmLib | src/plotArrays.py | 1 | 36278 | """
Copyright (c) 2016- by Dietmar W Weiss
This is free software; you can redistribute it and/or modify it
under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation; either version 3.0 of
the License, or (at your option) any later version.
This software ... | lgpl-3.0 |
megbedell/wobble | wobble/data.py | 1 | 31151 | import numpy as np
import h5py
import matplotlib.pyplot as plt
from itertools import compress
from astropy.io import fits
import pandas as pd
from .utils import fit_continuum
# attributes!
REQUIRED_3D = ['xs', 'ys', 'ivars'] # R-order lists of (N-epoch, M-pixel) arrays
REQUIRED_1D = ['bervs', 'airms'] # N-epoch array... | mit |
gmorph/MAVProxy | MAVProxy/mavproxy.py | 1 | 41141 | #!/usr/bin/env python
'''
mavproxy - a MAVLink proxy program
Copyright Andrew Tridgell 2011
Released under the GNU GPL version 3 or later
'''
import sys, os, time, socket, signal
import fnmatch, errno, threading
import serial, Queue, select
import traceback
import select
import shlex
from MAVProxy.modules.lib impor... | gpl-3.0 |
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