instruction stringlengths 225 2.35k | input stringlengths 89 1.5k | response stringclasses 698 values |
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<Instruct>: Given the context 'DNA sequencing
Sequence analyses were performed directly on the RT–PCR product using an automatic DNA sequencing equipment with the BigDye® Terminator Cycle Sequencing Kit (Applied Biosystem).
RESULTS
S.tuberosum rps10 transcripts are not processed in wheat mitochondria
The S.tuberosum rps10 construct under control of a wheat cox2 promoter (Figure 1A) was incorporated into purified wheat mitochondria by electroporation as indicated in Materials and Methods.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: triticum tauschii (aka aegilops tauschii)
B: triticum sativum (aka triticum aestivum)
C: triticum
D: triticum x secale (aka x triticosecale)
E: wild emmer wheat (aka triticum dicoccoides)
F: None of the above. | [B] |
<Instruct>: Given the context 'The primers used allowed detection of the transcripts generated by the constructs introduced and excluded any product from endogenous cox2 (or rps10 in the potato system).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: sweet potato (aka ipomoea batatas)
B: solanum nutans
C: chinese-potato (aka dioscorea polystachya)
D: potatoes (aka solanum tuberosum)
E: solanum crispum (chilean potato-tree) (aka solanum crispum)
F: None of the above. | [D] |
<Instruct>: Given the context 'Previously, five C residues, two in exon 1, one in the intron and two in exon 2 have been reported to be changed to U by editing in potato mitochondria (23).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: sweet potato (aka ipomoea batatas)
B: potato (aka solanum tuberosum)
C: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
D: solanum annuum
E: solanum rugosum
F: None of the above. | [B] |
<Instruct>: Given the context 'To determine if the non-cognate transcript could be recognized by the wheat RNA editing machinery, the 1204 bp RT–PCR product was sequenced.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: triticum durum (aka triticum turgidum subsp. durum)
B: triticum x secale (aka x triticosecale)
C: triticum aethiopicum (aka triticum turgidum)
D: wild emmer wheat (aka triticum dicoccoides)
E: bread wheat (aka triticum aestivum)
F: None of the above. | [E] |
<Instruct>: Given the context 'While wheat cox2 editing sites were correctly edited in control as expected (Figure 1C, only site C77 is shown), all five editable residues in potato rps10 transcript remain unchanged.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum ipomoeoides
B: one-grained wheat (aka triticum monococcum)
C: triticum strictum (aka secale strictum)
D: solanum glutinosum
E: triticum aethiopicum (aka triticum turgidum)
F: chinese-potato (aka dioscorea polystachya)
G: chaco potato (aka solanum chacoense)
H: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
I: potato (aka solanum tuberosum)
J: durum wheat (aka triticum turgidum subsp. durum)
K: None of the above. | [H; I] |
<Instruct>: Given the context 'While wheat cox2 editing sites were correctly edited in control as expected (Figure 1C, only site C77 is shown), all five editable residues in potato rps10 transcript remain unchanged.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum aegilops (aka aegilops tauschii)
B: solanum glutinosum
C: tuberaria
D: triticum strictum (aka secale strictum)
E: english wheat (aka triticum turgidum)
F: wheat (aka triticum aestivum)
G: triticum x secale (aka x triticosecale)
H: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
I: solanum giganteum
J: potatoes (aka solanum tuberosum)
K: None of the above. | [F; J] |
<Instruct>: Given the context 'cox2 C77 editing sites are identical in potato and wheat.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; wheat]
<Options>: A: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
B: tuberaria
C: wild emmer wheat (aka triticum dicoccoides)
D: solanum nutans
E: potatoes (aka solanum tuberosum)
F: triticum
G: solanum glutinosum
H: chaco potato (aka solanum chacoense)
I: triticum durum (aka triticum turgidum subsp. durum)
J: one-grained wheat (aka triticum monococcum)
K: None of the above. | [E; A] |
<Instruct>: Given the context 'cox2 C77 editing sites are identical in potato and wheat.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; wheat]
<Options>: A: solanum crispum (chilean potato-tree) (aka solanum crispum)
B: potatoes (aka solanum tuberosum)
C: solanum ipomoeoides
D: chinese-potato (aka dioscorea polystachya)
E: wild emmer wheat (aka triticum dicoccoides)
F: one-grained wheat (aka triticum monococcum)
G: triticum strictum (aka secale strictum)
H: english wheat (aka triticum turgidum)
I: solanum annuum
J: triticum vulgare (aka triticum aestivum)
K: None of the above. | [B; J] |
<Instruct>: Given the context 'Failure of rps10 transcript splicing in wheat mitochondria is not linked to the absence of editing
It has been suggested that residues C2 and C3 participate in the secondary structure of the intron necessary for splicing (23).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: triticum
B: triticum aestivum subsp. aestivum (aka triticum aestivum)
C: durum wheat (aka triticum turgidum subsp. durum)
D: wild emmer wheat (aka triticum dicoccoides)
E: poulard wheat (aka triticum turgidum)
F: None of the above. | [B] |
<Instruct>: Given the context 'Electroporation of S.tuberosum mitochondria
Since two important post-transcriptional processes, RNA editing and splicing, were inoperative when S.tuberosum rps10 was expressed in wheat mitochondria, we decided to verify whether the negative results were inherent to the rps10 chimeric constructs or due to the lack of trans-recognition elements in wheat mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum; wheat]
<Options>: A: tuberosum group
B: solanum vicinum
C: solanum barbisetum
D: wild emmer wheat (aka triticum dicoccoides)
E: common wheat (aka triticum aestivum)
F: triticum x secale (aka x triticosecale)
G: solanum ruvu
H: durum wheat (aka triticum turgidum subsp. durum)
I: triticum
J: potato (aka solanum tuberosum)
K: None of the above. | [J; E] |
<Instruct>: Given the context 'Electroporation of S.tuberosum mitochondria
Since two important post-transcriptional processes, RNA editing and splicing, were inoperative when S.tuberosum rps10 was expressed in wheat mitochondria, we decided to verify whether the negative results were inherent to the rps10 chimeric constructs or due to the lack of trans-recognition elements in wheat mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum; wheat]
<Options>: A: triticum
B: solanum lanceaefolium (aka solanum lanceifolium)
C: solanum glutinosum
D: potato (aka solanum tuberosum)
E: wheat (aka triticum aestivum)
F: solanum paludosum
G: solanum ruvu
H: triticum aethiopicum (aka triticum turgidum)
I: triticum strictum (aka secale strictum)
J: one-grained wheat (aka triticum monococcum)
K: None of the above. | [D; E] |
<Instruct>: Given the context 'For this purpose, it was necessary to set up an electroporation protocol adapted to S.tuberosum mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum]
<Options>: A: potato (aka solanum tuberosum)
B: tuberosum group
C: solanum florulentum
D: solanum paludosum
E: solanum succosum
F: None of the above. | [A] |
<Instruct>: Given the context 'Purified organelles were prepared from potato tubers as indicated in Materials and Methods.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum crispum (chilean potato-tree) (aka solanum crispum)
B: potatoes (aka solanum tuberosum)
C: solanum
D: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
E: sweet potato (aka ipomoea batatas)
F: None of the above. | [B] |
<Instruct>: Given the context 'Purified organelles were prepared from potato tubers as indicated in Materials and Methods.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
B: sweet potato (aka ipomoea batatas)
C: solanum
D: solanum crispum (chilean potato-tree) (aka solanum crispum)
E: None of the above. | [E] |
<Instruct>: Given the context 'Potato mitochondria show a broad range response with a maximum around 13 kV (Figure 3).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum annuum
B: chaco potato (aka solanum chacoense)
C: sweet potato (aka ipomoea batatas)
D: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
E: potato (aka solanum tuberosum)
F: None of the above. | [E] |
<Instruct>: Given the context 'This voltage setting was therefore used for further experiments.
S.tuberosum mitochondria does not recognize the wheat cox2 promoter
To ascertain the ability of electroporated mitochondria to perform expression of the exogenous gene construct, we used a plasmid containing the potato cox2 gene controlled either by T.aestivum or S.tuberosum promoters.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum; wheat; potato; t.aestivum]
<Options>: A: triticum aestivum subsp. aestivum (aka triticum aestivum)
B: solanum paludosum
C: solanum glabratum
D: solanum rugosum
E: triticum aethiopicum (aka triticum turgidum)
F: triticum aegilops (aka aegilops tauschii)
G: solanum crispum (chilean potato-tree) (aka solanum crispum)
H: tuberosum group
I: triticum aestivum var. aureum
J: solanum tuberosum var. boreale (aka solanum stoloniferum)
K: solanum ipomoeoides
L: triticum aestivum var. milturum (triticum vulgare var. miltura) (aka triticum aestivum var. milturum)
M: triticum aestivum x secale anatolicum
N: sweet potato (aka ipomoea batatas)
O: wild emmer wheat (aka triticum dicoccoides)
P: potatoes (aka solanum tuberosum)
Q: triticum
R: None of the above. | [P; A; P; A] |
<Instruct>: Given the context 'This voltage setting was therefore used for further experiments.
S.tuberosum mitochondria does not recognize the wheat cox2 promoter
To ascertain the ability of electroporated mitochondria to perform expression of the exogenous gene construct, we used a plasmid containing the potato cox2 gene controlled either by T.aestivum or S.tuberosum promoters.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum; wheat; potato; t.aestivum]
<Options>: A: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
B: potatoes (aka solanum tuberosum)
C: triticum vulgare var. miltura (aka triticum aestivum var. milturum)
D: solanum rugosum
E: triticum strictum (aka secale strictum)
F: chaco potato (aka solanum chacoense)
G: triticum aestivum x secale anatolicum
H: poulard wheat (aka triticum turgidum)
I: triticum aestivum subsp. tibeticum (tibetan wheat) (aka triticum aestivum subsp. tibeticum)
J: solanum giganteum
K: durum wheat (aka triticum turgidum subsp. durum)
L: triticum x secale (aka x triticosecale)
M: triticum
N: solanum glabratum
O: solanum mammosum
P: solanum luteum (aka solanum villosum)
Q: solanum glutinosum
R: solanum paludosum
S: None of the above. | [B; A; B; A] |
<Instruct>: Given the context 'This voltage setting was therefore used for further experiments.
S.tuberosum mitochondria does not recognize the wheat cox2 promoter
To ascertain the ability of electroporated mitochondria to perform expression of the exogenous gene construct, we used a plasmid containing the potato cox2 gene controlled either by T.aestivum or S.tuberosum promoters.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum; wheat; potato; t.aestivum]
<Options>: A: solanum glutinosum
B: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
C: triticum aestivum var. aureum
D: sweet potato (aka ipomoea batatas)
E: tuberaria
F: triticum
G: triticum spelta var. album
H: chinese-potato (aka dioscorea polystachya)
I: triticum aestivum subsp. tibeticum (tibetan wheat) (aka triticum aestivum subsp. tibeticum)
J: triticum tauschii (aka aegilops tauschii)
K: potatoes (aka solanum tuberosum)
L: triticum aethiopicum (aka triticum turgidum)
M: solanum vicinum
N: solanum barbisetum
O: solanum crispum (chilean potato-tree) (aka solanum crispum)
P: triticum aestivum x secale anatolicum
Q: triticum strictum (aka secale strictum)
R: solanum pallidum
S: None of the above. | [K; B; K; B] |
<Instruct>: Given the context 'This voltage setting was therefore used for further experiments.
S.tuberosum mitochondria does not recognize the wheat cox2 promoter
To ascertain the ability of electroporated mitochondria to perform expression of the exogenous gene construct, we used a plasmid containing the potato cox2 gene controlled either by T.aestivum or S.tuberosum promoters.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum; wheat; potato; t.aestivum]
<Options>: A: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
B: triticum aestivum subsp. aestivum (aka triticum aestivum)
C: triticum strictum (aka secale strictum)
D: triticum aestivum var. milturum (triticum vulgare var. miltura) (aka triticum aestivum var. milturum)
E: triticum tauschii (aka aegilops tauschii)
F: triticum
G: solanum nutans
H: triticum aestivum subsp. tibeticum (tibetan wheat) (aka triticum aestivum subsp. tibeticum)
I: solanum esculentum (aka solanum lycopersicum)
J: solanum rugosum
K: one-grained wheat (aka triticum monococcum)
L: solanum giganteum
M: triticum spelta var. album
N: solanum vicinum
O: solanum trifolium
P: solanum
Q: potatoes (aka solanum tuberosum)
R: durum wheat (aka triticum turgidum subsp. durum)
S: None of the above. | [Q; B; Q; B] |
<Instruct>: Given the context 'This voltage setting was therefore used for further experiments.
S.tuberosum mitochondria does not recognize the wheat cox2 promoter
To ascertain the ability of electroporated mitochondria to perform expression of the exogenous gene construct, we used a plasmid containing the potato cox2 gene controlled either by T.aestivum or S.tuberosum promoters.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum]
<Options>: A: solanum florulentum
B: potato (aka solanum tuberosum)
C: solanum hirtum
D: solanum paludosum
E: solanum luteum (aka solanum villosum)
F: None of the above. | [B] |
<Instruct>: Given the context 'As shown in Figure 4, the construct containing the wheat or potato promoters was transcribed only in cognate mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum
B: durum wheat (aka triticum turgidum subsp. durum)
C: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
D: one-grained wheat (aka triticum monococcum)
E: solanum
F: triticum strictum (aka secale strictum)
G: solanum nutans
H: triticum vulgare (aka triticum aestivum)
I: solanum glutinosum
J: solanum giganteum
K: None of the above. | [H; C] |
<Instruct>: Given the context 'As shown in Figure 4, the construct containing the wheat or potato promoters was transcribed only in cognate mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: durum wheat (aka triticum turgidum subsp. durum)
B: triticum vulgare (aka triticum aestivum)
C: triticum
D: solanum
E: solanum nutans
F: one-grained wheat (aka triticum monococcum)
G: solanum giganteum
H: solanum glutinosum
I: triticum strictum (aka secale strictum)
J: None of the above. | [B; J] |
<Instruct>: Given the context 'As shown in Figure 4, the construct containing the wheat or potato promoters was transcribed only in cognate mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum
B: solanum giganteum
C: solanum glutinosum
D: english wheat (aka triticum turgidum)
E: solanum annuum
F: durum wheat (aka triticum turgidum subsp. durum)
G: triticum x secale (aka x triticosecale)
H: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
I: potatoes (aka solanum tuberosum)
J: solanum rugosum
K: None of the above. | [H; I] |
<Instruct>: Given the context 'In potato, the mature product is barely detectable.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
B: dioscorea bulbifera (potato yam) (aka dioscorea bulbifera)
C: solanum giganteum
D: solanum glutinosum
E: solanum annuum
F: None of the above. | [A] |
<Instruct>: Given the context 'In contrast to wheat mitochondria, the 821 nt mature transcript was only detected when the electroporated potato mitochondria were incubated in the presence of fatty acid-free BSA.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum strictum (aka secale strictum)
B: solanum glutinosum
C: triticum x secale (aka x triticosecale)
D: solanum
E: wild emmer wheat (aka triticum dicoccoides)
F: triticum tauschii (aka aegilops tauschii)
G: sweet potato (aka ipomoea batatas)
H: potato (aka solanum tuberosum)
I: solanum annuum
J: wheat (aka triticum aestivum)
K: None of the above. | [J; H] |
<Instruct>: Given the context 'In contrast to wheat mitochondria, the 821 nt mature transcript was only detected when the electroporated potato mitochondria were incubated in the presence of fatty acid-free BSA.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum strictum (aka secale strictum)
B: sweet potato (aka ipomoea batatas)
C: solanum rugosum
D: wheat (aka triticum aestivum)
E: triticum
F: triticum aegilops (aka aegilops tauschii)
G: chaco potato (aka solanum chacoense)
H: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
I: triticum durum (aka triticum turgidum subsp. durum)
J: potato (aka solanum tuberosum)
K: None of the above. | [D; J] |
<Instruct>: Given the context 'A cognate rps10 construct is correctly expressed, edited and processed in potato mitochondria
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: sweet potato (aka ipomoea batatas)
B: solanum ipomoeoides
C: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
D: chinese-potato (aka dioscorea polystachya)
E: solanum nutans
F: None of the above. | [C] |
<Instruct>: Given the context 'The construct expressing potato rps10 under the control of potato cox2 promoter was introduced into S.tuberosum isolated mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; s.tuberosum]
<Options>: A: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
B: solanum barbisetum
C: solanum
D: tuberaria
E: solanum esculentum (aka solanum lycopersicum)
F: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
G: dioscorea bulbifera (potato yam) (aka dioscorea bulbifera)
H: solanum succosum
I: None of the above. | [A; A] |
<Instruct>: Given the context 'The construct expressing potato rps10 under the control of potato cox2 promoter was introduced into S.tuberosum isolated mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; s.tuberosum]
<Options>: A: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
B: tuberaria
C: solanum barbisetum
D: solanum succosum
E: solanum esculentum (aka solanum lycopersicum)
F: solanum
G: dioscorea bulbifera (potato yam) (aka dioscorea bulbifera)
H: None of the above. | [H; H] |
<Instruct>: Given the context 'The construct expressing potato rps10 under the control of potato cox2 promoter was introduced into S.tuberosum isolated mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; s.tuberosum]
<Options>: A: solanum glutinosum
B: solanum ruvu
C: chinese-potato (aka dioscorea polystachya)
D: sweet potato (aka ipomoea batatas)
E: solanum giganteum
F: solanum trifolium
G: solanum mammosum
H: chaco potato (aka solanum chacoense)
I: potato (aka solanum tuberosum)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'A cognate editing site in a non-native context is not recognized by wheat mitochondria but is recognized in heterologous mitochondria
To test whether wheat mitochondria are able to edit a cognate site when placed in the context of a potato transcript, we introduced the C259 −16/+6 region from wheat cox2 into potato rps10 exon 1 or intron (Figure 6A, construct MA and ME6, respectively).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: wild emmer wheat (aka triticum dicoccoides)
B: air-potato (aka dioscorea bulbifera)
C: solanum
D: triticum durum (aka triticum turgidum subsp. durum)
E: chaco potato (aka solanum chacoense)
F: one-grained wheat (aka triticum monococcum)
G: potatoes (aka solanum tuberosum)
H: triticum
I: solanum giganteum
J: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
K: None of the above. | [J; G] |
<Instruct>: Given the context 'A cognate editing site in a non-native context is not recognized by wheat mitochondria but is recognized in heterologous mitochondria
To test whether wheat mitochondria are able to edit a cognate site when placed in the context of a potato transcript, we introduced the C259 −16/+6 region from wheat cox2 into potato rps10 exon 1 or intron (Figure 6A, construct MA and ME6, respectively).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum rugosum
B: solanum
C: potatoes (aka solanum tuberosum)
D: solanum crispum (chilean potato-tree) (aka solanum crispum)
E: triticum durum (aka triticum turgidum subsp. durum)
F: one-grained wheat (aka triticum monococcum)
G: triticum strictum (aka secale strictum)
H: wild emmer wheat (aka triticum dicoccoides)
I: common wheat (aka triticum aestivum)
J: air-potato (aka dioscorea bulbifera)
K: None of the above. | [I; C] |
<Instruct>: Given the context 'A cognate editing site in a non-native context is not recognized by wheat mitochondria but is recognized in heterologous mitochondria
To test whether wheat mitochondria are able to edit a cognate site when placed in the context of a potato transcript, we introduced the C259 −16/+6 region from wheat cox2 into potato rps10 exon 1 or intron (Figure 6A, construct MA and ME6, respectively).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum nutans
B: chinese-potato (aka dioscorea polystachya)
C: chaco potato (aka solanum chacoense)
D: chilean potato-tree (aka solanum crispum)
E: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
F: None of the above. | [E] |
<Instruct>: Given the context 'As reported previously, the 23 nt region forming the C259 editing site from wheat cox2 was efficiently edited when grafted into a different context in a wheat transcript (17).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: poulard wheat (aka triticum turgidum)
B: durum wheat (aka triticum turgidum subsp. durum)
C: wild emmer wheat (aka triticum dicoccoides)
D: one-grained wheat (aka triticum monococcum)
E: wheat (aka triticum aestivum)
F: None of the above. | [E] |
<Instruct>: Given the context 'Wild-type rps10 (pRPS10W) and the MA and ME6 mutants were expressed in wheat mitochondria but no splicing was observed (Figure 6B).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: triticum x secale (aka x triticosecale)
B: triticum aegilops (aka aegilops tauschii)
C: one-grained wheat (aka triticum monococcum)
D: triticum vulgare (aka triticum aestivum)
E: triticum strictum (aka secale strictum)
F: None of the above. | [D] |
<Instruct>: Given the context 'Unexpectedly, wheat mitochondria appear to be unable to edit the cognate C259 site when the −16/+6 region is located on a potato rps10 precursor.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum
B: sweet potato (aka ipomoea batatas)
C: triticum strictum (aka secale strictum)
D: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
E: wild emmer wheat (aka triticum dicoccoides)
F: solanum crispum (chilean potato-tree) (aka solanum crispum)
G: triticum aegilops (aka aegilops tauschii)
H: solanum ipomoeoides
I: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
J: potatoes (aka solanum tuberosum)
K: None of the above. | [I; J] |
<Instruct>: Given the context 'Unexpectedly, wheat mitochondria appear to be unable to edit the cognate C259 site when the −16/+6 region is located on a potato rps10 precursor.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
B: triticum
C: english wheat (aka triticum turgidum)
D: solanum
E: solanum ipomoeoides
F: triticum tauschii (aka aegilops tauschii)
G: dioscorea bulbifera (potato yam) (aka dioscorea bulbifera)
H: triticum vulgare (aka triticum aestivum)
I: solanum annuum
J: triticum durum (aka triticum turgidum subsp. durum)
K: None of the above. | [H; A] |
<Instruct>: Given the context 'The analogous MAb and ME6b constructs, containing the S.tuberosum cox2 promoter and the C259 region inserted into rps10 exon 1 and intron were used to electroporate potato mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum; potato]
<Options>: A: solanum nutans
B: solanum glabratum
C: sweet potato (aka ipomoea batatas)
D: potatoes (aka solanum tuberosum)
E: solanum giganteum
F: solanum paludosum
G: solanum glutinosum
H: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
I: solanum trifolium
J: None of the above. | [D; D] |
<Instruct>: Given the context 'The analogous MAb and ME6b constructs, containing the S.tuberosum cox2 promoter and the C259 region inserted into rps10 exon 1 and intron were used to electroporate potato mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum; potato]
<Options>: A: potato (aka solanum tuberosum)
B: solanum annuum
C: tuberosum group
D: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
E: solanum vicinum
F: air-potato (aka dioscorea bulbifera)
G: solanum paludosum
H: solanum nutans
I: solanum
J: None of the above. | [A; A] |
<Instruct>: Given the context 'Interestingly, while C259 insertion was not recognized in wheat mitochondria (Figure 6D), the potato RNA editing machinery edited the inserted C259 region (Figure 6E).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
B: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
C: tuberaria
D: rivet wheat (aka triticum turgidum)
E: solanum annuum
F: triticum tauschii (aka aegilops tauschii)
G: solanum glutinosum
H: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
I: one-grained wheat (aka triticum monococcum)
J: triticum strictum (aka secale strictum)
K: None of the above. | [B; A] |
<Instruct>: Given the context 'Interestingly, while C259 insertion was not recognized in wheat mitochondria (Figure 6D), the potato RNA editing machinery edited the inserted C259 region (Figure 6E).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: tuberaria
B: triticum strictum (aka secale strictum)
C: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
D: triticum
E: sweet potato (aka ipomoea batatas)
F: triticum x secale (aka x triticosecale)
G: english wheat (aka triticum turgidum)
H: triticum aestivum subsp. aestivum (aka triticum aestivum)
I: chilean potato-tree (aka solanum crispum)
J: potato (aka solanum tuberosum)
K: None of the above. | [H; J] |
<Instruct>: Given the context 'rps10 was chosen precisely because this genetic information is lacking in wheat mitochondria but is active in potato mitochondria (20,23,25).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: chaco potato (aka solanum chacoense)
B: wild emmer wheat (aka triticum dicoccoides)
C: chinese-potato (aka dioscorea polystachya)
D: potato (aka solanum tuberosum)
E: triticum durum (aka triticum turgidum subsp. durum)
F: triticum tauschii (aka aegilops tauschii)
G: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
H: air-potato (aka dioscorea bulbifera)
I: solanum rugosum
J: one-grained wheat (aka triticum monococcum)
K: None of the above. | [G; D] |
<Instruct>: Given the context 'rps10 was chosen precisely because this genetic information is lacking in wheat mitochondria but is active in potato mitochondria (20,23,25).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum
B: chaco potato (aka solanum chacoense)
C: triticum aestivum subsp. aestivum (aka triticum aestivum)
D: one-grained wheat (aka triticum monococcum)
E: wild emmer wheat (aka triticum dicoccoides)
F: triticum x secale (aka x triticosecale)
G: triticum strictum (aka secale strictum)
H: potatoes (aka solanum tuberosum)
I: sweet potato (aka ipomoea batatas)
J: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
K: None of the above. | [C; H] |
<Instruct>: Given the context 'Moreover, rps10 transcripts undergo five C-to-U editing events in potato mitochondria and rps10 contains an intron, thus facilitating the analysis of post-transcriptional processing.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum nutans
B: chinese-potato (aka dioscorea polystachya)
C: tuberaria
D: potatoes (aka solanum tuberosum)
E: sweet potato (aka ipomoea batatas)
F: None of the above. | [D] |
<Instruct>: Given the context 'To best evaluate the expression of rps10 in the non-cognate mitochondria, it was necessary to set up electroporation conditions for introducing foreign DNA into S.tuberosum mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum]
<Options>: A: solanum trifolium
B: solanum lanceaefolium (aka solanum lanceifolium)
C: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
D: potato (aka solanum tuberosum)
E: solanum glabratum
F: None of the above. | [D] |
<Instruct>: Given the context 'Potato tuber mitochondria were able to incorporate DNA essentially under the same conditions described for wheat embryo organelles (14), except that the optimal voltage range was larger.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; wheat]
<Options>: A: potatoes (aka solanum tuberosum)
B: solanum annuum
C: solanum
D: chaco potato (aka solanum chacoense)
E: chinese-potato (aka dioscorea polystachya)
F: durum wheat (aka triticum turgidum subsp. durum)
G: wheat (aka triticum aestivum)
H: triticum aethiopicum (aka triticum turgidum)
I: one-grained wheat (aka triticum monococcum)
J: triticum x secale (aka x triticosecale)
K: None of the above. | [A; G] |
<Instruct>: Given the context 'Potato tuber mitochondria were able to incorporate DNA essentially under the same conditions described for wheat embryo organelles (14), except that the optimal voltage range was larger.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; wheat]
<Options>: A: tuberaria
B: triticum vulgare (aka triticum aestivum)
C: triticum strictum (aka secale strictum)
D: triticum
E: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
F: durum wheat (aka triticum turgidum subsp. durum)
G: triticum tauschii (aka aegilops tauschii)
H: solanum giganteum
I: solanum nutans
J: solanum ipomoeoides
K: None of the above. | [E; B] |
<Instruct>: Given the context 'A major difference to wheat was that isolated potato mitochondria were viable for 3–4 h as measured by oxygen consumption (data not shown).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
B: triticum x secale (aka x triticosecale)
C: triticum tauschii (aka aegilops tauschii)
D: bread wheat (aka triticum aestivum)
E: chaco potato (aka solanum chacoense)
F: potatoes (aka solanum tuberosum)
G: solanum nutans
H: triticum
I: chinese-potato (aka dioscorea polystachya)
J: rivet wheat (aka triticum turgidum)
K: None of the above. | [D; F] |
<Instruct>: Given the context 'A major difference to wheat was that isolated potato mitochondria were viable for 3–4 h as measured by oxygen consumption (data not shown).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
B: triticum aethiopicum (aka triticum turgidum)
C: solanum
D: tuberaria
E: chaco potato (aka solanum chacoense)
F: common wheat (aka triticum aestivum)
G: durum wheat (aka triticum turgidum subsp. durum)
H: triticum strictum (aka secale strictum)
I: solanum nutans
J: one-grained wheat (aka triticum monococcum)
K: None of the above. | [F; A] |
<Instruct>: Given the context 'This behaviour probably reflects the uncoupling of oxidative phosphorylation by fatty acids during incubation of potato mitochondria (26).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum rugosum
B: chilean potato-tree (aka solanum crispum)
C: air-potato (aka dioscorea bulbifera)
D: potatoes (aka solanum tuberosum)
E: tuberaria
F: None of the above. | [D] |
<Instruct>: Given the context 'An interesting observation was that neither the wheat nor the potato cox2 promoters were recognized in a heterologous context (Figure 4A and B).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum
B: sweet potato (aka ipomoea batatas)
C: wild emmer wheat (aka triticum dicoccoides)
D: triticum vulgare (aka triticum aestivum)
E: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
F: tuberaria
G: triticum durum (aka triticum turgidum subsp. durum)
H: triticum x secale (aka x triticosecale)
I: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
J: triticum
K: None of the above. | [D; E] |
<Instruct>: Given the context 'An interesting observation was that neither the wheat nor the potato cox2 promoters were recognized in a heterologous context (Figure 4A and B).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum
B: triticum tauschii (aka aegilops tauschii)
C: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
D: durum wheat (aka triticum turgidum subsp. durum)
E: wild emmer wheat (aka triticum dicoccoides)
F: chaco potato (aka solanum chacoense)
G: triticum vulgare (aka triticum aestivum)
H: one-grained wheat (aka triticum monococcum)
I: solanum nutans
J: tuberaria
K: None of the above. | [G; C] |
<Instruct>: Given the context 'An interesting observation was that neither the wheat nor the potato cox2 promoters were recognized in a heterologous context (Figure 4A and B).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum vulgare (aka triticum aestivum)
B: triticum tauschii (aka aegilops tauschii)
C: chaco potato (aka solanum chacoense)
D: tuberaria
E: solanum
F: wild emmer wheat (aka triticum dicoccoides)
G: solanum nutans
H: durum wheat (aka triticum turgidum subsp. durum)
I: one-grained wheat (aka triticum monococcum)
J: None of the above. | [A; J] |
<Instruct>: Given the context 'This situation might by explained by the fact that potato and wheat promoter sequences have no recognizable homologous motifs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; wheat]
<Options>: A: tuberaria
B: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
C: wild emmer wheat (aka triticum dicoccoides)
D: sweet potato (aka ipomoea batatas)
E: one-grained wheat (aka triticum monococcum)
F: solanum glutinosum
G: durum wheat (aka triticum turgidum subsp. durum)
H: potatoes (aka solanum tuberosum)
I: bread wheat (aka triticum aestivum)
J: triticum tauschii (aka aegilops tauschii)
K: None of the above. | [H; I] |
<Instruct>: Given the context 'This situation might by explained by the fact that potato and wheat promoter sequences have no recognizable homologous motifs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; wheat]
<Options>: A: potatoes (aka solanum tuberosum)
B: solanum glutinosum
C: triticum
D: solanum rugosum
E: triticum x secale (aka x triticosecale)
F: solanum nutans
G: solanum giganteum
H: triticum tauschii (aka aegilops tauschii)
I: wild emmer wheat (aka triticum dicoccoides)
J: triticum vulgare (aka triticum aestivum)
K: None of the above. | [A; J] |
<Instruct>: Given the context 'While the transcription initiation site in wheat mitochondria is located at position −170 (29), the potato promoter has not yet been described.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum rugosum
B: solanum nutans
C: triticum strictum (aka secale strictum)
D: chinese-potato (aka dioscorea polystachya)
E: potato (aka solanum tuberosum)
F: triticum
G: triticum sativum (aka triticum aestivum)
H: chaco potato (aka solanum chacoense)
I: triticum x secale (aka x triticosecale)
J: triticum durum (aka triticum turgidum subsp. durum)
K: None of the above. | [G; E] |
<Instruct>: Given the context 'While the transcription initiation site in wheat mitochondria is located at position −170 (29), the potato promoter has not yet been described.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum crispum (chilean potato-tree) (aka solanum crispum)
B: potato (aka solanum tuberosum)
C: triticum
D: solanum giganteum
E: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
F: durum wheat (aka triticum turgidum subsp. durum)
G: wheat (aka triticum aestivum)
H: chinese-potato (aka dioscorea polystachya)
I: one-grained wheat (aka triticum monococcum)
J: triticum x secale (aka x triticosecale)
K: None of the above. | [G; B] |
<Instruct>: Given the context 'However, the lack of crossed recognition of cox2 promoters in wheat and potato is not a general situation since the A.thaliana cox2 gene is expressed and spliced when introduced into maize mitochondria, indicating that the Arabidopsis gene shares some signals with maize cox2 promoter that are sufficient for transcription (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato; a.thaliana; maize]
<Options>: A: zea ramosa (aka zea mays subsp. mays)
B: triticum aegilops (aka aegilops tauschii)
C: leguminaia
D: maize (aka zea mays)
E: arabidopsis thaliana x arabidopsis halleri
F: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
G: solanum nutans
H: arabis thaliana (aka arabidopsis thaliana)
I: triticum
J: zea mays subsp. mays x zea mays subsp. mexicana
K: durum wheat (aka triticum turgidum subsp. durum)
L: solanum
M: zea mays subsp. mays x zea mays subsp. parviglumis
N: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
O: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
P: australytta
Q: zea mays subsp. mays x zea perennis
R: solanum rugosum
S: one-grained wheat (aka triticum monococcum)
T: vascular plants (aka tracheophyta)
U: None of the above. | [F; O; H; D] |
<Instruct>: Given the context 'However, the lack of crossed recognition of cox2 promoters in wheat and potato is not a general situation since the A.thaliana cox2 gene is expressed and spliced when introduced into maize mitochondria, indicating that the Arabidopsis gene shares some signals with maize cox2 promoter that are sufficient for transcription (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato; a.thaliana; maize]
<Options>: A: australytta
B: one-grained wheat (aka triticum monococcum)
C: euphyes
D: triticum
E: thale-cress (aka arabidopsis thaliana)
F: solanum ipomoeoides
G: triticum strictum (aka secale strictum)
H: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
I: triticum aegilops (aka aegilops tauschii)
J: zea mays var. japonica (aka zea mays)
K: tuberaria
L: solanum giganteum
M: brassica
N: zea mays subsp. mays x zea mays subsp. parviglumis
O: zea mays subsp. mays (zea mays var. saccharata (sturtev.) l.h.bailey, 1902) (aka zea mays subsp. mays)
P: zea mays subsp. mays x zea mays subsp. mexicana
Q: archeria
R: zea mexicana (aka zea mays subsp. mexicana)
S: solanum
T: triticum sativum (aka triticum aestivum)
U: None of the above. | [T; H; E; J] |
<Instruct>: Given the context 'However, the lack of crossed recognition of cox2 promoters in wheat and potato is not a general situation since the A.thaliana cox2 gene is expressed and spliced when introduced into maize mitochondria, indicating that the Arabidopsis gene shares some signals with maize cox2 promoter that are sufficient for transcription (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato; a.thaliana; maize]
<Options>: A: chaco potato (aka solanum chacoense)
B: beana
C: triticum sativum (aka triticum aestivum)
D: zea mays subsp. mays x zea mays subsp. mexicana
E: one-grained wheat (aka triticum monococcum)
F: australytta
G: ansola
H: zea mays var. japonica (aka zea mays)
I: solanum rugosum
J: thale-cress (aka arabidopsis thaliana)
K: zea mays subsp. amylacea (aka zea mays subsp. mays)
L: leguminaia
M: triticum aegilops (aka aegilops tauschii)
N: chinese-potato (aka dioscorea polystachya)
O: zea mays subsp. mays x zea mays subsp. parviglumis
P: solanum nutans
Q: wild emmer wheat (aka triticum dicoccoides)
R: triticum strictum (aka secale strictum)
S: zea mays subsp. mays x zea perennis
T: potato (aka solanum tuberosum)
U: None of the above. | [C; T; J; H] |
<Instruct>: Given the context 'However, the lack of crossed recognition of cox2 promoters in wheat and potato is not a general situation since the A.thaliana cox2 gene is expressed and spliced when introduced into maize mitochondria, indicating that the Arabidopsis gene shares some signals with maize cox2 promoter that are sufficient for transcription (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato; a.thaliana; maize]
<Options>: A: wild emmer wheat (aka triticum dicoccoides)
B: thale-cress (aka arabidopsis thaliana)
C: zea mays subsp. amylacea (aka zea mays subsp. mays)
D: one-grained wheat (aka triticum monococcum)
E: ansola
F: zea mays var. japonica (aka zea mays)
G: leguminaia
H: australytta
I: zea mays subsp. mays x zea mays subsp. mexicana
J: beana
K: chaco potato (aka solanum chacoense)
L: solanum rugosum
M: solanum nutans
N: triticum aegilops (aka aegilops tauschii)
O: triticum strictum (aka secale strictum)
P: zea mays subsp. mays x zea mays subsp. parviglumis
Q: potato (aka solanum tuberosum)
R: chinese-potato (aka dioscorea polystachya)
S: zea mays subsp. mays x zea perennis
T: None of the above. | [T; Q; B; F] |
<Instruct>: Given the context 'However, the lack of crossed recognition of cox2 promoters in wheat and potato is not a general situation since the A.thaliana cox2 gene is expressed and spliced when introduced into maize mitochondria, indicating that the Arabidopsis gene shares some signals with maize cox2 promoter that are sufficient for transcription (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato; a.thaliana; maize]
<Options>: A: euphyia
B: bread wheat (aka triticum aestivum)
C: euphyes
D: triticum x secale (aka x triticosecale)
E: zea mexicana (aka zea mays subsp. mexicana)
F: solanum giganteum
G: vascular plants (aka tracheophyta)
H: chinese-potato (aka dioscorea polystachya)
I: dioscorea bulbifera (potato yam) (aka dioscorea bulbifera)
J: zea saccharata (aka zea mays subsp. mays)
K: zea mays var. japonica (aka zea mays)
L: thale-cress (aka arabidopsis thaliana)
M: solanum rugosum
N: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
O: beana
P: triticum aethiopicum (aka triticum turgidum)
Q: zea mays subsp. mays x zea mays subsp. parviglumis
R: wild emmer wheat (aka triticum dicoccoides)
S: triticum strictum (aka secale strictum)
T: zea mays subsp. mays x zea perennis
U: None of the above. | [B; N; L; K] |
<Instruct>: Given the context 'However, the lack of crossed recognition of cox2 promoters in wheat and potato is not a general situation since the A.thaliana cox2 gene is expressed and spliced when introduced into maize mitochondria, indicating that the Arabidopsis gene shares some signals with maize cox2 promoter that are sufficient for transcription (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [arabidopsis; maize]
<Options>: A: zea mays subsp. mays x zea perennis
B: zea mays (zea mays var. japonica) (aka zea mays)
C: euphyia
D: arabis thaliana (aka arabidopsis thaliana)
E: zea mexicana (aka zea mays subsp. mexicana)
F: (arabidopsis thaliana x arabidopsis arenosa) x arabidopsis suecica
G: zea mays subsp. mays x zea mays subsp. parviglumis
H: arabidopsis arenosa x arabidopsis thaliana
I: maize (aka zea mays subsp. mays)
J: ecphysis
K: None of the above. | [D; B] |
<Instruct>: Given the context 'However, the lack of crossed recognition of cox2 promoters in wheat and potato is not a general situation since the A.thaliana cox2 gene is expressed and spliced when introduced into maize mitochondria, indicating that the Arabidopsis gene shares some signals with maize cox2 promoter that are sufficient for transcription (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [arabidopsis; maize]
<Options>: A: zea mexicana (aka zea mays subsp. mexicana)
B: arabidopsis sp.
C: arabidopsis (cardaminopsis) (aka arabidopsis)
D: zea mays subsp. mays x zea mays subsp. mexicana
E: unclassified arabidopsis
F: zea mays subsp. mays x zea mays subsp. parviglumis
G: arabidopsis thaliana x arabidopsis arenosa
H: arabis thaliana (aka arabidopsis thaliana)
I: zea mays var. saccharata (aka zea mays subsp. mays)
J: zea mays var. japonica (aka zea mays)
K: None of the above. | [H; J] |
<Instruct>: Given the context 'The sites required for transcript initiation have been recently described in A.thaliana mitochondrial genes (28).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a.thaliana]
<Options>: A: thale-cress (aka arabidopsis thaliana)
B: archeria
C: arabidopsis thaliana x arabidopsis lyrata
D: arabidopsis sp.
E: arabidopsis thaliana x arabidopsis arenosa
F: None of the above. | [A] |
<Instruct>: Given the context 'We found no such homologous sequences in the potato cox2 upstream region indicating that the two dicot promoters do not have the same origin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum glutinosum
B: chinese-potato (aka dioscorea polystachya)
C: chilean potato-tree (aka solanum crispum)
D: solanum ipomoeoides
E: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
F: None of the above. | [E] |
<Instruct>: Given the context 'We found no such homologous sequences in the potato cox2 upstream region indicating that the two dicot promoters do not have the same origin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: chinese-potato (aka dioscorea polystachya)
B: solanum ipomoeoides
C: solanum glutinosum
D: chilean potato-tree (aka solanum crispum)
E: None of the above. | [E] |
<Instruct>: Given the context 'It should be mentioned that the presence of a conserved sequence is not sufficient for expression since a region that acts as promoter in Arabidopsis, potato and Oenothera is inactive in vivo in pea (30).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [arabidopsis; potato; pea]
<Options>: A: white pea (aka lathyrus sativus)
B: solanum nutans
C: solanum rugosum
D: solanum glutinosum
E: unclassified arabidopsis
F: peas (aka pisum sativum) (aka pisum sativum)
G: pisum
H: arabidopsis thaliana x arabidopsis arenosa
I: pealius
J: meadow pea (aka lathyrus pratensis)
K: ecphysis
L: solanum ipomoeoides
M: arabidopsis environmental sample
N: potato (aka solanum tuberosum)
O: arabidopsis thaliana (mouse-ear cress) (aka arabidopsis thaliana)
P: None of the above. | [O; N; F] |
<Instruct>: Given the context 'It should be mentioned that the presence of a conserved sequence is not sufficient for expression since a region that acts as promoter in Arabidopsis, potato and Oenothera is inactive in vivo in pea (30).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [arabidopsis; potato; pea]
<Options>: A: arabidopsis (cardaminopsis) (aka arabidopsis)
B: arabidopsis thaliana x arabidopsis arenosa
C: perennial-pea (aka lathyrus latifolius)
D: ecphysis
E: arabidopsis suecica (arabis thaliana subsp. suecica) (aka arabidopsis suecica)
F: solanum nutans
G: peafowls (aka pavo)
H: wild pea (aka pisum sativum subsp. elatius)
I: arabidopsis thaliana (mouse-ear cress) (aka arabidopsis thaliana)
J: solanum ipomoeoides
K: peas (aka pisum sativum) (aka pisum sativum)
L: solanum glutinosum
M: potato (aka solanum tuberosum)
N: white pea (aka lathyrus sativus)
O: tuberaria
P: None of the above. | [I; M; K] |
<Instruct>: Given the context 'It should be mentioned that the presence of a conserved sequence is not sufficient for expression since a region that acts as promoter in Arabidopsis, potato and Oenothera is inactive in vivo in pea (30).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [arabidopsis; potato; pea]
<Options>: A: potato yam (aka dioscorea bulbifera)
B: arabideae
C: garden pea (aka pisum sativum)
D: vicieae (aka fabeae)
E: solanum crispum (chilean potato-tree) (aka solanum crispum)
F: arabidopsis thaliana x arabidopsis arenosa
G: potatoes (aka solanum tuberosum)
H: arabidopsis sp.
I: apophylia
J: solanum glutinosum
K: red pea (aka lathyrus cicera)
L: arabidopsis thaliana (mouse-ear cress) (aka arabidopsis thaliana)
M: marsh pea (aka lathyrus palustris)
N: pisum
O: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
P: None of the above. | [L; G; C] |
<Instruct>: Given the context 'The potato rps10 gene controlled by a T.aestivum promoter (Figure 1A) was transcribed as a 1204 nt precursor in wheat mitochondria, but no traces of mature RNA were observed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; t.aestivum; wheat]
<Options>: A: chaco potato (aka solanum chacoense)
B: solanum giganteum
C: one-grained wheat (aka triticum monococcum)
D: triticum
E: tuberaria
F: poulard wheat (aka triticum turgidum)
G: triticum sativum (aka triticum aestivum)
H: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
I: english wheat (aka triticum turgidum)
J: triticum aestivum var. aureum
K: triticum durum (aka triticum turgidum subsp. durum)
L: triticum x secale (aka x triticosecale)
M: potato (aka solanum tuberosum)
N: None of the above. | [M; G; G] |
<Instruct>: Given the context 'The potato rps10 gene controlled by a T.aestivum promoter (Figure 1A) was transcribed as a 1204 nt precursor in wheat mitochondria, but no traces of mature RNA were observed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; t.aestivum; wheat]
<Options>: A: triticum aegilops (aka aegilops tauschii)
B: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
C: english wheat (aka triticum turgidum)
D: triticum strictum (aka secale strictum)
E: triticum turanicum (aka triticum turgidum subsp. turanicum)
F: triticum x secale (aka x triticosecale)
G: solanum nutans
H: triticum aestivum var. aureum
I: durum wheat (aka triticum turgidum subsp. durum)
J: triticum aestivum subsp. tibeticum (tibetan wheat) (aka triticum aestivum subsp. tibeticum)
K: tuberaria
L: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
M: triticum vulgare (aka triticum aestivum)
N: solanum
O: None of the above. | [B; M; M] |
<Instruct>: Given the context 'The potato rps10 gene controlled by a T.aestivum promoter (Figure 1A) was transcribed as a 1204 nt precursor in wheat mitochondria, but no traces of mature RNA were observed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; t.aestivum; wheat]
<Options>: A: triticum aestivum x secale anatolicum
B: triticum
C: triticum x secale (aka x triticosecale)
D: solanum giganteum
E: tuberaria
F: poulard wheat (aka triticum turgidum)
G: triticum pyramidale (aka triticum turgidum subsp. pyramidale)
H: potato yam (aka dioscorea bulbifera)
I: chilean potato-tree (aka solanum crispum)
J: durum wheat (aka triticum turgidum subsp. durum)
K: triticum durum (aka triticum turgidum subsp. durum)
L: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
M: triticum aestivum subsp. aestivum (aka triticum aestivum)
N: None of the above. | [L; M; M] |
<Instruct>: Given the context 'Moreover, the five C residues reported as RNA editing targets in vivo (23) remain unchanged, indicating that rps10 transcript was not recognized by the wheat splicing and editing machinery.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: triticum durum (aka triticum turgidum subsp. durum)
B: bread wheat (aka triticum aestivum)
C: triticum aegilops (aka aegilops tauschii)
D: triticum x secale (aka x triticosecale)
E: triticum strictum (aka secale strictum)
F: None of the above. | [B] |
<Instruct>: Given the context 'Based on the canonical structure of group II mitochondrial introns (21), two editing sites, C2 located at the Intron Binding Site 2 (IBS2) and C3 located in the intron, nine residues downstream from the end of exon 1 in S.tuberosum rps10 are of particular interest.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum]
<Options>: A: potatoes (aka solanum tuberosum)
B: solanum trifolium
C: solanum esculentum (aka solanum lycopersicum)
D: solanum glabratum
E: solanum glutinosum
F: None of the above. | [A] |
<Instruct>: Given the context 'Based on the canonical structure of group II mitochondrial introns (21), two editing sites, C2 located at the Intron Binding Site 2 (IBS2) and C3 located in the intron, nine residues downstream from the end of exon 1 in S.tuberosum rps10 are of particular interest.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.tuberosum]
<Options>: A: solanum glutinosum
B: solanum glabratum
C: solanum esculentum (aka solanum lycopersicum)
D: solanum trifolium
E: None of the above. | [E] |
<Instruct>: Given the context 'This position may be crucial for splicing as inferred from mutants of a yeast mitochondrial intron (32).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomyces cf. cerevisiae/paradoxus (saccharomyces cerevisiae or paradoxus) (aka saccharomyces cf. cerevisiae/paradoxus)
B: baker's yeast (aka saccharomyces cerevisiae)
C: saccharomyces cerevisiae x saccharomyces mikatae
D: saccharomyces hansenii (aka debaryomyces hansenii)
E: saccharomycodes
F: None of the above. | [B] |
<Instruct>: Given the context 'These results clearly demonstrate that C2 and C3 editing is not sufficient for splicing of rps10 precursor in wheat mitochondria and lead us to conclude that splicing failure is probably linked to the lack of trans-recognition elements.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: one-grained wheat (aka triticum monococcum)
B: triticum tauschii (aka aegilops tauschii)
C: poulard wheat (aka triticum turgidum)
D: triticum sativum (aka triticum aestivum)
E: durum wheat (aka triticum turgidum subsp. durum)
F: None of the above. | [D] |
<Instruct>: Given the context 'The C-to-U mutants were also tested in potato mitochondria; no significant differences were detected in splicing efficiency when compared to the unedited construct (D. Choury, unpublished data).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum giganteum
B: solanum glutinosum
C: potatoes (aka solanum tuberosum)
D: solanum rugosum
E: solanum nutans
F: None of the above. | [C] |
<Instruct>: Given the context 'It should be noted that the lack of splicing in wheat mitochondria is not a general feature of potato introns, since the potato cox2 intron is removed efficiently (Figure 4B).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum
B: solanum glutinosum
C: chaco potato (aka solanum chacoense)
D: wild emmer wheat (aka triticum dicoccoides)
E: triticum strictum (aka secale strictum)
F: potato (aka solanum tuberosum)
G: triticum durum (aka triticum turgidum subsp. durum)
H: sweet potato (aka ipomoea batatas)
I: chilean potato-tree (aka solanum crispum)
J: triticum sativum (aka triticum aestivum)
K: None of the above. | [J; F] |
<Instruct>: Given the context 'It should be noted that the lack of splicing in wheat mitochondria is not a general feature of potato introns, since the potato cox2 intron is removed efficiently (Figure 4B).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: chinese-potato (aka dioscorea polystachya)
B: solanum glutinosum
C: solanum ipomoeoides
D: one-grained wheat (aka triticum monococcum)
E: solanum giganteum
F: triticum x secale (aka x triticosecale)
G: triticum aestivum (triticum aestivum subsp. aestivum) (aka triticum aestivum)
H: triticum aegilops (aka aegilops tauschii)
I: potatoes (aka solanum tuberosum)
J: wild emmer wheat (aka triticum dicoccoides)
K: None of the above. | [G; I] |
<Instruct>: Given the context 'This is consistent with the hypothesis that potato and wheat mitochondria have similar trans-acting factors for cox2 intron removal.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; wheat]
<Options>: A: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
B: sweet potato (aka ipomoea batatas)
C: solanum
D: solanum crispum (chilean potato-tree) (aka solanum crispum)
E: potato (aka solanum tuberosum)
F: wild emmer wheat (aka triticum dicoccoides)
G: triticum x secale (aka x triticosecale)
H: triticum sativum (aka triticum aestivum)
I: triticum tauschii (aka aegilops tauschii)
J: triticum strictum (aka secale strictum)
K: None of the above. | [E; H] |
<Instruct>: Given the context 'This is consistent with the hypothesis that potato and wheat mitochondria have similar trans-acting factors for cox2 intron removal.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato; wheat]
<Options>: A: triticum aegilops (aka aegilops tauschii)
B: triticum durum (aka triticum turgidum subsp. durum)
C: solanum giganteum
D: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
E: triticum strictum (aka secale strictum)
F: potato (aka solanum tuberosum)
G: potato yam (aka dioscorea bulbifera)
H: triticum x secale (aka x triticosecale)
I: wheat (aka triticum aestivum)
J: solanum nutans
K: None of the above. | [F; I] |
<Instruct>: Given the context 'In rice, failure of RNA maturation and editing has been correlated with cytoplasmic male sterile phenotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rice]
<Options>: A: oryza sativa (indica group) (aka oryza sativa indica group)
B: common wild rice (aka oryza rufipogon)
C: japonica rice (aka oryza sativa japonica group)
D: oryza
E: red rice (aka oryza sativa)
F: None of the above. | [E] |
<Instruct>: Given the context 'In organello studies have shown that S.bicolor atp6-1 gene was transcribed but not edited when introduced into maize mitochondria (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.bicolor; maize]
<Options>: A: zea mays subsp. mays x zea perennis
B: scarus bicolor (aka cetoscarus bicolor)
C: zea mays subsp. amylacea (aka zea mays subsp. mays)
D: zea mexicana (aka zea mays subsp. mexicana)
E: maize (aka zea mays)
F: zea mays subsp. mays x zea mays subsp. mexicana
G: monotoma bicolor
H: quedius bicoloris
I: suillus bicolor (aka baorangia bicolor)
J: corsomyza bicolor
K: None of the above. | [K; E] |
<Instruct>: Given the context 'In organello studies have shown that S.bicolor atp6-1 gene was transcribed but not edited when introduced into maize mitochondria (18).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s.bicolor; maize]
<Options>: A: zea mays var. japonica (aka zea mays)
B: zea mays subsp. mays x zea mays subsp. mexicana
C: zea mexicana (aka zea mays subsp. mexicana)
D: zea mays subsp. mays x zea mays subsp. parviglumis
E: zea mays subsp. mays x zea perennis
F: sulawesidrobia bicolor
G: spreo bicolor (aka lamprotornis bicolor)
H: melipona bicolor subsp. bicolor (aka melipona bicolor bicolor)
I: helomyza bicolor (aka suillia bicolor)
J: suillus bicolor (aka baorangia bicolor)
K: None of the above. | [K; A] |
<Instruct>: Given the context 'However, partially edited molecules were detected in sorghum-maize atp6 chimeric transcripts when they included the maize atp6 5′-untranslated sequence, suggesting that the 5′ non-coding region provides a structural motif or binding site for a transcript-specific editing factor (34).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sorghum; maize]
<Options>: A: sorghum bulbosum
B: zea mexicana (aka zea mays subsp. mexicana)
C: zea mays subsp. amylacea (aka zea mays subsp. mays)
D: zea mays subsp. mays x zea perennis
E: sorghum angustum
F: zea mays subsp. mays x zea mays subsp. parviglumis
G: johnson grass (aka sorghum halepense)
H: sorghum bicolor (sorghum bicolor subsp. bicolor) (aka sorghum bicolor)
I: maize (aka zea mays)
J: sorghum bicolor subsp. arundinaceum (aka sorghum arundinaceum)
K: None of the above. | [H; I] |
<Instruct>: Given the context 'However, partially edited molecules were detected in sorghum-maize atp6 chimeric transcripts when they included the maize atp6 5′-untranslated sequence, suggesting that the 5′ non-coding region provides a structural motif or binding site for a transcript-specific editing factor (34).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sorghum; maize]
<Options>: A: johnson grass (aka sorghum halepense)
B: zea mays (zea mays var. japonica) (aka zea mays)
C: sorghum brachypodum
D: zea mays subsp. mays x zea perennis
E: sorghum sorghoides (cleistachne sorghoides) (aka sorghum sorghoides)
F: sorghum saccharatum (aka sorghum bicolor)
G: sorghum angustum
H: zea mays subsp. mays x zea mays subsp. mexicana
I: zea mexicana (aka zea mays subsp. mexicana)
J: zea mays subsp. mays x zea mays subsp. parviglumis
K: None of the above. | [F; B] |
<Instruct>: Given the context 'However, partially edited molecules were detected in sorghum-maize atp6 chimeric transcripts when they included the maize atp6 5′-untranslated sequence, suggesting that the 5′ non-coding region provides a structural motif or binding site for a transcript-specific editing factor (34).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sorghum; maize]
<Options>: A: zea mays subsp. mays x zea perennis
B: johnson grass (aka sorghum halepense)
C: zea mays subsp. mays x zea mays subsp. parviglumis
D: sorghum sorghoides (cleistachne sorghoides) (aka sorghum sorghoides)
E: sorghum angustum
F: zea mexicana (aka zea mays subsp. mexicana)
G: sorghum saccharatum (aka sorghum bicolor)
H: zea mays subsp. mays x zea mays subsp. mexicana
I: sorghum brachypodum
J: None of the above. | [G; J] |
<Instruct>: Given the context 'Since wheat mitochondria do not have rps10 encoded in the mitochondrial genome (20), it was interesting to test whether wheat mitochondria were able to recognize editing sites which had been lost during evolution.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: one-grained wheat (aka triticum monococcum)
B: triticum aegilops (aka aegilops tauschii)
C: english wheat (aka triticum turgidum)
D: durum wheat (aka triticum turgidum subsp. durum)
E: triticum aestivum subsp. aestivum (aka triticum aestivum)
F: None of the above. | [E] |
<Instruct>: Given the context 'As described above, the rps10 transcript was not processed in wheat but it was correctly spliced in cognate mitochondria (Figure 5A).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: wild emmer wheat (aka triticum dicoccoides)
B: triticum aestivum subsp. aestivum (aka triticum aestivum)
C: triticum
D: triticum aethiopicum (aka triticum turgidum)
E: durum wheat (aka triticum turgidum subsp. durum)
F: None of the above. | [B] |
<Instruct>: Given the context 'The fact that the four editing sites were found either edited or unedited in spliced rps10 mRNA is an indication that editing does not precede splicing as was previously found for cox2 in wheat (15).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: triticum durum (aka triticum turgidum subsp. durum)
B: one-grained wheat (aka triticum monococcum)
C: triticum
D: triticum sativum (aka triticum aestivum)
E: triticum strictum (aka secale strictum)
F: None of the above. | [D] |
<Instruct>: Given the context 'This possibility can be discarded since potato rps10 precursor mRNA was found to be edited in vivo (23).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum tuberosum (solanum aracc-papa) (aka solanum tuberosum)
B: solanum rugosum
C: chinese-potato (aka dioscorea polystachya)
D: solanum glutinosum
E: tuberaria
F: None of the above. | [A] |
<Instruct>: Given the context 'This led us to postulate that the inability of wheat mitochondria to recognize rps10 editing sites is likely due to the fact that wheat mitochondria have lost the editing trans-recognition elements which become dispensable after transfer of rps10 to the nucleus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: triticum vulgare (aka triticum aestivum)
B: triticum strictum (aka secale strictum)
C: triticum x secale (aka x triticosecale)
D: one-grained wheat (aka triticum monococcum)
E: english wheat (aka triticum turgidum)
F: None of the above. | [A] |
<Instruct>: Given the context 'To test this possibility, rps10 chimeric plasmids containing editing site C259 from wheat cox2 inserted either in exon1 or the intron were constructed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: wild emmer wheat (aka triticum dicoccoides)
B: triticum tauschii (aka aegilops tauschii)
C: triticum x secale (aka x triticosecale)
D: triticum
E: triticum aestivum subsp. aestivum (aka triticum aestivum)
F: None of the above. | [E] |
<Instruct>: Given the context 'The wheat C259 editing site in the chimeric construct was correctly edited by potato mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: solanum
B: dioscorea bulbifera (potato yam) (aka dioscorea bulbifera)
C: chilean potato-tree (aka solanum crispum)
D: triticum x secale (aka x triticosecale)
E: triticum tauschii (aka aegilops tauschii)
F: one-grained wheat (aka triticum monococcum)
G: sweet potato (aka ipomoea batatas)
H: potatoes (aka solanum tuberosum)
I: wild emmer wheat (aka triticum dicoccoides)
J: triticum aestivum subsp. aestivum (aka triticum aestivum)
K: None of the above. | [J; H] |
<Instruct>: Given the context 'The wheat C259 editing site in the chimeric construct was correctly edited by potato mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: wild emmer wheat (aka triticum dicoccoides)
B: bread wheat (aka triticum aestivum)
C: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
D: triticum aethiopicum (aka triticum turgidum)
E: triticum x secale (aka x triticosecale)
F: triticum
G: solanum crispum (chilean potato-tree) (aka solanum crispum)
H: potatoes (aka solanum tuberosum)
I: solanum glutinosum
J: potato yam (aka dioscorea bulbifera)
K: None of the above. | [B; H] |
<Instruct>: Given the context 'The wheat C259 editing site in the chimeric construct was correctly edited by potato mitochondria.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat; potato]
<Options>: A: triticum
B: potato yam (aka dioscorea bulbifera)
C: solanum crispum (chilean potato-tree) (aka solanum crispum)
D: bread wheat (aka triticum aestivum)
E: solanum glutinosum
F: triticum x secale (aka x triticosecale)
G: triticum aethiopicum (aka triticum turgidum)
H: wild emmer wheat (aka triticum dicoccoides)
I: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
J: None of the above. | [D; J] |
<Instruct>: Given the context 'This result is not unexpected since the corresponding region in endogenous potato cox2 mRNA, which presents two differences at positions −3 (C instead of A) and −7 (G instead of A), is edited.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [potato]
<Options>: A: solanum nutans
B: solanum giganteum
C: solanum insanum (solanum melongena var. insanum) (aka solanum insanum)
D: potatoes (aka solanum tuberosum)
E: chinese-potato (aka dioscorea polystachya)
F: None of the above. | [D] |
<Instruct>: Given the context 'Surprisingly, the C259 editing site grafted in rps10 was not recognized by the wheat editing machinery.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wheat]
<Options>: A: triticum
B: triticum x secale (aka x triticosecale)
C: bread wheat (aka triticum aestivum)
D: triticum strictum (aka secale strictum)
E: wild emmer wheat (aka triticum dicoccoides)
F: None of the above. | [C] |
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