instruction stringlengths 225 2.35k | input stringlengths 89 1.5k | response stringclasses 698 values |
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<Instruct>: Given the context 'The observation that three out of 14 patients in the probable BD group also had antibody to kinectin and the similar percentage of positive reactors between this group and Group I (21.4% versus 24%) supports this notion.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: subsection
B: kingdom
C: goes
D: human (aka homo sapiens)
E: humans (aka homo)
F: None of the above. | [D] |
<Instruct>: Given the context 'The further use of non-clinical parameters such as immunological biomarkers as adjuncts to identify BD patients could be of help in the classification of this disease entity
While our work was ongoing, anti-kinectin antibodies were reported in sera from patients with hepatocellular carcinoma (HCC)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: other (aka unidentified)
B: theraps
C: homo sapiens (human) (aka homo sapiens)
D: genus
E: species
F: None of the above. | [C] |
<Instruct>: Given the context 'The further use of non-clinical parameters such as immunological biomarkers as adjuncts to identify BD patients could be of help in the classification of this disease entity
While our work was ongoing, anti-kinectin antibodies were reported in sera from patients with hepatocellular carcinoma (HCC)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: genus
B: species
C: theraps
D: other (aka unidentified)
E: None of the above. | [E] |
<Instruct>: Given the context 'The first HCC report [35] identified kinectin as a tumor-associated antigen from the screening of an autologous cDNA library constructed from the cancer of a 30-year-old patient from Guangxi, China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: human (aka homo sapiens)
B: probles
C: humans (aka homo)
D: other (aka unidentified)
E: circe
F: None of the above. | [A] |
<Instruct>: Given the context 'This report stated that four out of five HCC patients tested were positive for anti-kinectin antibody', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: cancer
B: human (aka homo sapiens)
C: kingdom
D: homo (humans) (aka homo)
E: circe
F: None of the above. | [B] |
<Instruct>: Given the context 'In 2004, another laboratory also reported the cloning of kinectin as a tumor-associated antigen from a (presumably) different 30-year-old Chinese HCC patient [36].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: aides
B: suborder
C: this
D: circe
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'In contrast, anti-kinectin antibodies were not detected in other studies of HCC patients associated with our laboratory [39,40].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: mus musculus (house mouse) (aka mus musculus)
C: goes
D: species
E: circe
F: None of the above. | [A] |
<Instruct>: Given the context 'The initial report by Hirano et al. identified kinectin by screening an aplastic anemia patient for candidate antigens using a Clontech human fetal liver cDNA expression library and it was concluded that seven out of 18 aplastic anemia patients were positive for anti-kinectin while none of the normal or disease controls had this antibody', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; human; patients]
<Options>: A: genus
B: biota (aka cellular organisms)
C: species
D: other (aka unidentified)
E: probles
F: human (aka homo sapiens)
G: circe
H: subsection
I: mammals (aka mammalia)
J: eutherian mammals (aka eutheria)
K: aides
L: goes
M: None of the above. | [F; F; F] |
<Instruct>: Given the context 'The initial report by Hirano et al. identified kinectin by screening an aplastic anemia patient for candidate antigens using a Clontech human fetal liver cDNA expression library and it was concluded that seven out of 18 aplastic anemia patients were positive for anti-kinectin while none of the normal or disease controls had this antibody', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; human; patients]
<Options>: A: other (aka unidentified)
B: homo sapiens (human) (aka homo sapiens)
C: species
D: aides
E: subsection
F: genus
G: primate (aka primates)
H: birds (aka aves)
I: isolate
J: mammals (aka mammalia)
K: kingdom
L: suborder
M: None of the above. | [B; B; B] |
<Instruct>: Given the context 'The initial report by Hirano et al. identified kinectin by screening an aplastic anemia patient for candidate antigens using a Clontech human fetal liver cDNA expression library and it was concluded that seven out of 18 aplastic anemia patients were positive for anti-kinectin while none of the normal or disease controls had this antibody', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; human; patients]
<Options>: A: subsection
B: mammals (aka mammalia)
C: primate (aka primates)
D: isolate
E: other (aka unidentified)
F: kingdom
G: birds (aka aves)
H: genus
I: aides
J: species
K: suborder
L: None of the above. | [L; L; L] |
<Instruct>: Given the context 'The initial report by Hirano et al. identified kinectin by screening an aplastic anemia patient for candidate antigens using a Clontech human fetal liver cDNA expression library and it was concluded that seven out of 18 aplastic anemia patients were positive for anti-kinectin while none of the normal or disease controls had this antibody', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; human; patients]
<Options>: A: circe
B: primate (aka primates)
C: biota (aka cellular organisms)
D: probles
E: aides
F: mus <genus> (mice (aka mus <genus>))
G: isolate
H: suborder
I: homo sapiens (human) (aka homo sapiens)
J: mammals (aka mammalia)
K: this
L: kingdom
M: None of the above. | [I; I; I] |
<Instruct>: Given the context 'In their recent report, Hirano et al. reported that anti-kinectin antibodies were found in 39% of aplastic anemia patients from the United States but only in three out of 30 (10%) cases in Japan [38].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: human (aka homo sapiens)
B: kingdom
C: other (aka unidentified)
D: probles
E: circe
F: None of the above. | [A] |
<Instruct>: Given the context 'In our study reported here, kinectin antibodies were only detected in BD patients and not in normal controls and SLE and SjS disease controls.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: probles
B: suborder
C: genus
D: circe
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'None of the BD patients with anti-kinectin had signs of HCC or aplastic anemia at the time of diagnosis and at up to 4 years of follow-up.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: other (aka unidentified)
B: suborder
C: species
D: probles
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Giantin, the highest molecular weight Golgi autoantigen reported, is the predominant target of human anti-Golgi complex antibodies and multiple non-cross-reactive epitopes have been mapped spanning the 350 kDa protein', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: homo (humans) (aka homo)
B: homo sapiens (human) (aka homo sapiens)
C: mammals (aka mammalia)
D: kingdom
E: probles
F: None of the above. | [B] |
<Instruct>: Given the context 'Conclusion
Here we report the detection of kinectin autoantibody in 23% of Chinese patients with BD.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: homo (humans) (aka homo)
B: probles
C: aides
D: kingdom
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'In an effort to clarify the association of BD with antibody to kinectin, it is essential to measure antibody to kinectin in larger patient populations including both BD, probable BD and important autoimmune rheumatic diseases such as SLE, SjS, rheumatoid arthritis etc., as well as those diseases not easily differentiated from BD, such as recurrent aphthous oral ulcer, Reiter's syndrome, inflammatory bowel diseases etc.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: mouse (aka mus musculus)
B: homo sapiens (human) (aka homo sapiens)
C: subsection
D: probles
E: genus
F: None of the above. | [B] |
<Instruct>: Given the context 'A novel DNA-binding protein modulating methicillin resistance in Staphylococcus aureus
Abstract
Background
Methicillin resistance in Staphylococcus aureus is conferred by the mecA-encoded penicillin-binding protein PBP2a.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [staphylococcus aureus]
<Options>: A: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
B: staphylococcus pyogenes aureus (aka staphylococcus aureus)
C: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
D: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
E: staphylococcus group (aka staphylococcaceae)
F: None of the above. | [B] |
<Instruct>: Given the context 'A novel DNA-binding protein modulating methicillin resistance in Staphylococcus aureus
Abstract
Background
Methicillin resistance in Staphylococcus aureus is conferred by the mecA-encoded penicillin-binding protein PBP2a.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [staphylococcus aureus]
<Options>: A: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
B: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
C: staphylococcus group (aka staphylococcaceae)
D: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
E: None of the above. | [E] |
<Instruct>: Given the context 'Nonpolar deletion of SA1665, in heterogeneously methicillin resistant S. aureus (MRSA) of different genetic backgrounds, increased methicillin resistance levels in a strain dependent manner.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; mrsa]
<Options>: A: staphylococcus (aurococcus) (aka staphylococcus)
B: staphylococcus aureus subsp. aureus mrsa_pr1 (staphylococcus aureus subsp. aureus strain mrsa_pr1) (aka staphylococcus aureus subsp. aureus mrsa_pr1)
C: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
D: staphylococcus aureus subsp. aureus col (staphylococcus aureus col) (aka staphylococcus aureus subsp. aureus col)
E: staphylococcus pyogenes aureus (aka staphylococcus aureus)
F: staphylococcus aureus strain pa (aka staphylococcus aureus pa)
G: staphylococcus aureus m2
H: staphylococcus aureus m1
I: None of the above. | [E; E] |
<Instruct>: Given the context 'Nonpolar deletion of SA1665, in heterogeneously methicillin resistant S. aureus (MRSA) of different genetic backgrounds, increased methicillin resistance levels in a strain dependent manner.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; mrsa]
<Options>: A: staphylococcus aureus m1
B: staphylococcus aureus str. pa (aka staphylococcus aureus pa)
C: micrococcus aureus (aka staphylococcus aureus)
D: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
E: staphylococcus aureus m2
F: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
G: staphylococcus aureus subsp. aureus usa300 (staphylococcus aureus subsp. aureus strain usa300) (aka staphylococcus aureus subsp. aureus usa300)
H: staphylococcus simulans bv. staphylolyticus (staphylococcus simulans staphylolyticus) (aka staphylococcus simulans bv. staphylolyticus)
I: staphylococcus group (aka staphylococcaceae)
J: None of the above. | [C; C] |
<Instruct>: Given the context 'Conclusion
SA1665 is a new chromosomal factor which influences methicillin resistance in MRSA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus m1
B: staphylococcus simulans staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
C: micrococcus pyogenes (aka staphylococcus aureus)
D: staphylococcus aureus subsp. aureus col (staphylococcus aureus col) (aka staphylococcus aureus subsp. aureus col)
E: staphylococcus aureus m2
F: None of the above. | [C] |
<Instruct>: Given the context 'Background
Methicillin resistant S. aureus (MRSA) are an ever increasing threat, both in clinical settings and more recently as an emerging community acquired pathogen.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; mrsa]
<Options>: A: staphylococcus aureus m1
B: staphylococcus aureus subsp. aureus col (staphylococcus aureus col) (aka staphylococcus aureus subsp. aureus col)
C: staphylococcus group (aka staphylococcaceae)
D: micrococcus aureus (aka staphylococcus aureus)
E: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
F: staphylococcus (aurococcus) (aka staphylococcus)
G: staphylococcus aureus m2
H: staphylococcus simulans bv. staphylolyticus (staphylococcus simulans staphylolyticus) (aka staphylococcus simulans bv. staphylolyticus)
I: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
J: None of the above. | [D; D] |
<Instruct>: Given the context 'Background
Methicillin resistant S. aureus (MRSA) are an ever increasing threat, both in clinical settings and more recently as an emerging community acquired pathogen.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; mrsa]
<Options>: A: staphylococcus group (aka staphylococcaceae)
B: staphylococcus aureus subsp. aureus strain usa300 (aka staphylococcus aureus subsp. aureus usa300)
C: staphylococcus sp. s
D: staphylococcus aureus subsp. aureus mrsa131 (staphylococcus aureus subsp. aureus strain mrsa131) (aka staphylococcus aureus subsp. aureus mrsa131)
E: staphylococcus aureus subsp. anaerobius (aka staphylococcus aureus)
F: staphylococcus simulans bv. staphylolyticus (staphylococcus simulans staphylolyticus) (aka staphylococcus simulans bv. staphylolyticus)
G: staphylococcus aureus m2
H: 'staphylococcus faecalis' (aka staphylococcus faecalis)
I: staphylococcus aureus subsp. aureus strain mrsa_pr1 (aka staphylococcus aureus subsp. aureus mrsa_pr1)
J: None of the above. | [E; E] |
<Instruct>: Given the context 'In S. aureus, methicillin resistance is conferred by an acquired, β-lactam-insensitive penicillin-binding protein (PBP), PBP2a', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus]
<Options>: A: staphylococcus sp. s
B: 'staphylococcus faecalis' (aka staphylococcus faecalis)
C: staphylococcus aureus subsp. anaerobius (aka staphylococcus aureus)
D: staphylococcus aureus subsp. aureus col (staphylococcus aureus col) (aka staphylococcus aureus subsp. aureus col)
E: staphylococcus simulans staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
F: None of the above. | [C] |
<Instruct>: Given the context 'In S. aureus, methicillin resistance is conferred by an acquired, β-lactam-insensitive penicillin-binding protein (PBP), PBP2a', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus]
<Options>: A: staphylococcus sp. s
B: 'staphylococcus faecalis' (aka staphylococcus faecalis)
C: staphylococcus aureus subsp. aureus col (staphylococcus aureus col) (aka staphylococcus aureus subsp. aureus col)
D: staphylococcus simulans staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
E: None of the above. | [E] |
<Instruct>: Given the context 'Heterogeneously resistant MRSA, when exposed to β-lactam antibiotics, segregate highly resistant subpopulations, which are much more resistant than the majority of the cells [10].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus mrsa_pr1 (staphylococcus aureus subsp. aureus strain mrsa_pr1) (aka staphylococcus aureus subsp. aureus mrsa_pr1)
B: micrococcus aureus (aka staphylococcus aureus)
C: staphylococcus aureus m1
D: staphylococcus aureus m2
E: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
F: None of the above. | [B] |
<Instruct>: Given the context 'The vast MIC differences between MRSA strains, the population heterogeneity within single strains and the dependence of resistance levels on external factors are reflected in these many structural genes and global regulators, which can influence resistance levels.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus simulans bv. staphylolyticus (staphylococcus simulans staphylolyticus) (aka staphylococcus simulans bv. staphylolyticus)
B: staphylococcus aureus subsp. aureus mrsa131 (staphylococcus aureus subsp. aureus strain mrsa131) (aka staphylococcus aureus subsp. aureus mrsa131)
C: staphylococcus aureus m1
D: staphylococcus pyogenes aureus (aka staphylococcus aureus)
E: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
F: None of the above. | [D] |
<Instruct>: Given the context 'While typically considered nosocomial pathogens, new faster growing and apparently more virulent MRSA have begun spreading in the community.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus str. pa (aka staphylococcus aureus pa)
B: staphylococcus aureus subsp. aureus str. mrsa_pr1 (aka staphylococcus aureus subsp. aureus mrsa_pr1)
C: staphylococcus aureus subsp. aureus str. usa300 (aka staphylococcus aureus subsp. aureus usa300)
D: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
E: micrococcus pyogenes (aka staphylococcus aureus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Interestingly, these emerging strains often express very low methicillin resistance, e.g. the MRSA clone spreading amongst intravenous drug users in the Zurich area, which has an in vitro doubling time of 25 min, but oxacillin MICs of only 0.5 to 4 μg/ml', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus mrsa_pr1 (staphylococcus aureus subsp. aureus strain mrsa_pr1) (aka staphylococcus aureus subsp. aureus mrsa_pr1)
B: staphylococcus aureus m1
C: staphylococcus aureus subsp. aureus mrsa131 (staphylococcus aureus subsp. aureus strain mrsa131) (aka staphylococcus aureus subsp. aureus mrsa131)
D: staphylococcus aureus (staphylococcus aureus subsp. anaerobius) (aka staphylococcus aureus)
E: staphylococcus simulans bv. staphylolyticus (staphylococcus simulans staphylolyticus) (aka staphylococcus simulans bv. staphylolyticus)
F: None of the above. | [D] |
<Instruct>: Given the context 'To identify potential factors involved in mecA regulation or methicillin resistance levels in such an extremely low level resistant MRSA, we performed DNA-binding protein purification assays, using the mecA operator region as bait.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus col (staphylococcus aureus col) (aka staphylococcus aureus subsp. aureus col)
B: staphylococcus simulans staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
C: staphylococcus aureus (staphylococcus aureus subsp. anaerobius) (aka staphylococcus aureus)
D: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
E: staphylococcus aureus m2
F: None of the above. | [C] |
<Instruct>: Given the context 'Results
Identification of SA1665
MRSA strain CHE482 is the type strain for the so-called "drug clone" spreading amongst intravenous drug users in the Zurich area', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus pyogenes aureus (aka staphylococcus aureus)
B: staphylococcus aureus m1
C: staphylococcus aureus str. pa (aka staphylococcus aureus pa)
D: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
E: staphylococcus aureus subsp. aureus usa300 (staphylococcus aureus subsp. aureus strain usa300) (aka staphylococcus aureus subsp. aureus usa300)
F: None of the above. | [A] |
<Instruct>: Given the context 'However, like most other low-level resistant MRSA, it can segregate a small proportion of higher resistant subclones in the presence of β-lactams.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus mrsa_pr1 (staphylococcus aureus subsp. aureus strain mrsa_pr1) (aka staphylococcus aureus subsp. aureus mrsa_pr1)
B: staphylococcus aureus m1
C: staphylococcus aureus subsp. aureus str. usa300 (aka staphylococcus aureus subsp. aureus usa300)
D: staphylococcus pyogenes aureus (aka staphylococcus aureus)
E: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
F: None of the above. | [D] |
<Instruct>: Given the context 'We hypothesized that regulation of methicillin resistance in such low-level resistant clonal lineages may differ qualitatively from classical heterogeneously- or highly-resistant MRSA.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus strain mrsa_pr1 (aka staphylococcus aureus subsp. aureus mrsa_pr1)
B: micrococcus aureus (aka staphylococcus aureus)
C: staphylococcus aureus subsp. aureus strain usa300 (aka staphylococcus aureus subsp. aureus usa300)
D: staphylococcus aureus m1
E: staphylococcus simulans bv. staphylolyticus (staphylococcus simulans staphylolyticus) (aka staphylococcus simulans bv. staphylolyticus)
F: None of the above. | [B] |
<Instruct>: Given the context 'The amino acid sequence of SA1665 showed 100% identity amongst S. aureus database sequences and 97–98% identity amongst other staphylococci, including S. haemolyticus, S. epidermidis and S. saprophyticus, indicating that SA1665 is highly conserved.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; s. haemolyticus; s. epidermidis; s. saprophyticus]
<Options>: A: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
B: streptococcus hominis
C: annulatascus saprophyticus
D: staphylococcus sp. u
E: streptococcus sanguinis
F: micrococcus epidermidis (aka staphylococcus epidermidis)
G: staphylococcus epidermidis str. cons (aka staphylococcus epidermidis cons)
H: streptococcus gallolyticus (streptococcus gallolyticus osawa et al. 1996) (aka streptococcus gallolyticus)
I: staphylococcus aureus subsp. anaerobius (aka staphylococcus aureus)
J: streptobacterium casei (aka lacticaseibacillus casei)
K: staphylococcus hominis subsp. hominis
L: staphylococcus saprophyticus subsp. bovis (aka staphylococcus saprophyticus)
M: streptococcus hemolyticus (aka streptococcus pyogenes)
N: staphylococcus group (aka staphylococcaceae)
O: staphylococcus sp. s
P: staphylococcus aureus strain pa (aka staphylococcus aureus pa)
Q: brevibacterium epidermidis
R: streptococcus defectivus (aka abiotrophia defectiva)
S: 'staphylococcus faecalis' (aka staphylococcus faecalis)
T: staphylococcus haemolyticus
U: None of the above. | [I; T; A; L] |
<Instruct>: Given the context 'The amino acid sequence of SA1665 showed 100% identity amongst S. aureus database sequences and 97–98% identity amongst other staphylococci, including S. haemolyticus, S. epidermidis and S. saprophyticus, indicating that SA1665 is highly conserved.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; s. haemolyticus; s. epidermidis; s. saprophyticus]
<Options>: A: staphylococcus haemolyticus
B: streptococcus hemolyticus (aka streptococcus pyogenes)
C: streptococcus alactolyticus (streptococcus intestinalis) (aka streptococcus alactolyticus)
D: streptococcus defectivus (aka abiotrophia defectiva)
E: staphylococcus sp. s
F: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
G: staphylococcus (aurococcus) (aka staphylococcus)
H: staphylococcus saprophyticus (staphylococcus saprophyticus subsp. bovis) (aka staphylococcus saprophyticus)
I: streptococcus caprinus (aka streptococcus gallolyticus)
J: staphylococcus sp. u
K: streptococcus saccharolyticus (aka enterococcus saccharolyticus)
L: micrococcus aureus (aka staphylococcus aureus)
M: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
N: micrococcus epidermidis (aka staphylococcus epidermidis)
O: streptococcus hominis
P: streptococcus gallolyticus subsp. gallolyticus
Q: annulatascus saprophyticus
R: None of the above. | [L; A; N; H] |
<Instruct>: Given the context 'The amino acid sequence of SA1665 showed 100% identity amongst S. aureus database sequences and 97–98% identity amongst other staphylococci, including S. haemolyticus, S. epidermidis and S. saprophyticus, indicating that SA1665 is highly conserved.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; s. haemolyticus; s. epidermidis; s. saprophyticus]
<Options>: A: roussoella saprophytica
B: macrococcus epidermidis (macrococcoides epidermidis) (aka macrococcus epidermidis)
C: micrococcus aureus (aka staphylococcus aureus)
D: enterococcus saccharolyticus subsp. saccharolyticus
E: actinobacillus equuli-like (aka actinobacillus equuli subsp. haemolyticus)
F: staphylococcus hominis
G: micrococcus epidermidis (aka staphylococcus epidermidis)
H: streptococcus hominis
I: staphylococcus sp. s
J: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
K: staphylococcus epidermidis strain cons (aka staphylococcus epidermidis cons)
L: staphylococcus aureus strain pa (aka staphylococcus aureus pa)
M: chromobacterium haemolyticum
N: staphylococcus (aurococcus) (aka staphylococcus)
O: staphylococcus haemolyticus
P: streptococcus hemolyticus (aka streptococcus pyogenes)
Q: staphylococcus hominis subsp. hominis
R: staphylococcus saprophyticus subsp. bovis (aka staphylococcus saprophyticus)
S: albococcus epidermidis (aka staphylococcus epidermidis)
T: None of the above. | [C; O; S; R] |
<Instruct>: Given the context 'The amino acid sequence of SA1665 showed 100% identity amongst S. aureus database sequences and 97–98% identity amongst other staphylococci, including S. haemolyticus, S. epidermidis and S. saprophyticus, indicating that SA1665 is highly conserved.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; s. haemolyticus; s. epidermidis; s. saprophyticus]
<Options>: A: enterococcus saccharolyticus subsp. saccharolyticus
B: micrococcus aureus (aka staphylococcus aureus)
C: chromobacterium haemolyticum
D: actinobacillus equuli-like (aka actinobacillus equuli subsp. haemolyticus)
E: staphylococcus (aurococcus) (aka staphylococcus)
F: staphylococcus saprophyticus subsp. bovis (aka staphylococcus saprophyticus)
G: micrococcus epidermidis (aka staphylococcus epidermidis)
H: staphylococcus hominis
I: staphylococcus sp. s
J: streptococcus hominis
K: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
L: staphylococcus hominis subsp. hominis
M: streptococcus hemolyticus (aka streptococcus pyogenes)
N: staphylococcus haemolyticus
O: staphylococcus epidermidis strain cons (aka staphylococcus epidermidis cons)
P: staphylococcus aureus strain pa (aka staphylococcus aureus pa)
Q: roussoella saprophytica
R: macrococcus epidermidis (macrococcoides epidermidis) (aka macrococcus epidermidis)
S: None of the above. | [B; N; S; F] |
<Instruct>: Given the context 'The amino acid sequence of SA1665 showed 100% identity amongst S. aureus database sequences and 97–98% identity amongst other staphylococci, including S. haemolyticus, S. epidermidis and S. saprophyticus, indicating that SA1665 is highly conserved.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. aureus; s. haemolyticus; s. epidermidis; s. saprophyticus]
<Options>: A: streptococcus hominis
B: staphylococcus hominis subsp. hominis
C: streptococcus defectivus (aka abiotrophia defectiva)
D: staphylococcus (aurococcus) (aka staphylococcus)
E: bacillus hominis
F: staphylococcus saprophyticus (staphylococcus saprophyticus subsp. bovis) (aka staphylococcus saprophyticus)
G: chromobacterium haemolyticum
H: staphylococcus pyogenes aureus (aka staphylococcus aureus)
I: staphylococcus epidermidis str. cons (aka staphylococcus epidermidis cons)
J: pleurotheciella saprophytica
K: staphylococcus simulans bv. staphylolyticus (staphylococcus simulans staphylolyticus) (aka staphylococcus simulans bv. staphylolyticus)
L: micrococcus epidermidis (aka staphylococcus epidermidis)
M: 'staphylococcus faecalis' (aka staphylococcus faecalis)
N: staphylococcus group (aka staphylococcaceae)
O: staphylococcus haemolyticus
P: roussoella saprophytica
Q: streptococcus sp. 'group b' (streptococcus sp. (group b)) (aka streptococcus sp. 'group b')
R: staphylococcus sp. s
S: staphylococcus sp. u
T: None of the above. | [H; O; L; F] |
<Instruct>: Given the context 'Conversely, there were no orfs highly similar to SA1665 found in other bacterial species, with the most similar sequences found in Bacillus licheniformis DSM13 and Desulfitobacterium hafniense Y51, which shared only 64% and 59% similarity, respectively.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus licheniformis; desulfitobacterium hafniense y51]
<Options>: A: bacillus natto (aka bacillus subtilis)
B: desulfitobacterium hafniense dsm 13557 (aka desulfitobacterium hafniense tcp-a)
C: desulfitobacterium hafniense str. y51 (aka desulfitobacterium hafniense y51)
D: bacillus licheniformis s 16
E: desulfitobacterium dehalogenans str. atcc 51507 (aka desulfitobacterium dehalogenans atcc 51507)
F: bacillus licheniformis dsm 13 (aka bacillus licheniformis dsm 13 = atcc 14580)
G: desulfitobacterium hafniense dsm 10664 (aka desulfitobacterium hafniense dcb-2)
H: omphalina licheniformis
I: sulfitobacter sp. sa51
J: denitrobacillus licheniformis (aka bacillus licheniformis)
K: None of the above. | [J; C] |
<Instruct>: Given the context 'Conversely, there were no orfs highly similar to SA1665 found in other bacterial species, with the most similar sequences found in Bacillus licheniformis DSM13 and Desulfitobacterium hafniense Y51, which shared only 64% and 59% similarity, respectively.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus licheniformis; desulfitobacterium hafniense y51]
<Options>: A: bacillus sp. ly
B: desulfitobacterium dehalogenans str. atcc 51507 (aka desulfitobacterium dehalogenans atcc 51507)
C: denitrobacillus licheniformis (aka bacillus licheniformis)
D: sulfitobacter sp. sa51
E: desulfitobacterium hafniense str. y51 (aka desulfitobacterium hafniense y51)
F: bacillus licheniformis s 16
G: omphalina licheniformis
H: desulfitobacterium hafniense dsm 13498 (aka desulfitobacterium hafniense dp7)
I: bacterium ycy51
J: bacillus licheniformis atcc 9945a (aka bacillus paralicheniformis atcc 9945a)
K: None of the above. | [C; E] |
<Instruct>: Given the context 'Crude protein extracts of E. coli strain BL21, carrying the empty plasmid (pET28nHis6) or pME20 (pET28nHis6-SA1665) which expressed nHis6-SA1665 upon induction with IPTG, were incubated with the 161-bp biotinylated-DNA fragment previously used as bait in the DNA-binding protein assay.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli strain bl21]
<Options>: A: escherichia coli strain mg1657 (aka escherichia coli mg1657)
B: escherichia coli str. bl21 (aka escherichia coli bl21)
C: escherichia coli strain 1520 (aka escherichia coli 1520)
D: escherichia coli str. bl21(de3) (aka escherichia coli bl21(de3))
E: escherichia coli strain bw2952 (aka escherichia coli bw2952)
F: None of the above. | [B] |
<Instruct>: Given the context 'Effect of SA1665 deletion on β-lactam resistance
To analyse the effect of SA1665 inactivation on methicillin resistance, nonpolar markerless deletions of SA1665 (Figure 1B) were constructed in a selection of clinical MRSA isolates, which varied in their genetic background, SCCmec type, and mecA regulation [24].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus mrsa131 (staphylococcus aureus subsp. aureus strain mrsa131) (aka staphylococcus aureus subsp. aureus mrsa131)
B: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
C: staphylococcus aureus subsp. aureus str. usa300 (aka staphylococcus aureus subsp. aureus usa300)
D: micrococcus pyogenes (aka staphylococcus aureus)
E: staphylococcus aureus m2
F: None of the above. | [D] |
<Instruct>: Given the context 'Effect of SA1665 deletion on β-lactam resistance
To analyse the effect of SA1665 inactivation on methicillin resistance, nonpolar markerless deletions of SA1665 (Figure 1B) were constructed in a selection of clinical MRSA isolates, which varied in their genetic background, SCCmec type, and mecA regulation [24].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus mrsa131 (staphylococcus aureus subsp. aureus strain mrsa131) (aka staphylococcus aureus subsp. aureus mrsa131)
B: staphylococcus aureus subsp. aureus str. usa300 (aka staphylococcus aureus subsp. aureus usa300)
C: staphylococcus aureus m2
D: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
E: None of the above. | [E] |
<Instruct>: Given the context 'Discussion
Methicillin resistance in MRSA is primarily dependent on the presence of the mecA gene, however, resistance levels are generally governed by strain-specific factors including mecA regulatory elements and other chromosomal fem/aux factors which either enhance or repress the expression of resistance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus pyogenes aureus (aka staphylococcus aureus)
B: staphylococcus aureus m1
C: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
D: staphylococcus aureus subsp. aureus str. mrsa_pr1 (aka staphylococcus aureus subsp. aureus mrsa_pr1)
E: staphylococcus aureus subsp. aureus mrsa131 (staphylococcus aureus subsp. aureus strain mrsa131) (aka staphylococcus aureus subsp. aureus mrsa131)
F: None of the above. | [A] |
<Instruct>: Given the context 'The impact of deleting SA1665 in MRSA was extremely strain specific, underlining the importance of the genetic background in governing the final methicillin resistance levels of MRSA, and demonstrating the large genomic variability between different strain lineages.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus str. pa (aka staphylococcus aureus pa)
B: staphylococcus aureus subsp. aureus mrsa131 (staphylococcus aureus subsp. aureus strain mrsa131) (aka staphylococcus aureus subsp. aureus mrsa131)
C: staphylococcus aureus subsp. aureus str. usa300 (aka staphylococcus aureus subsp. aureus usa300)
D: micrococcus pyogenes (aka staphylococcus aureus)
E: staphylococcus aureus m2
F: None of the above. | [D] |
<Instruct>: Given the context 'Conclusion
SA1665 is a previously uncharacterised DNA-binding protein that has a negative effect on β-lactam resistance in MRSA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus strain usa300 (aka staphylococcus aureus subsp. aureus usa300)
B: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
C: staphylococcus simulans bv. staphylolyticus (staphylococcus simulans staphylolyticus) (aka staphylococcus simulans bv. staphylolyticus)
D: staphylococcus aureus subsp. aureus mrsa131 (staphylococcus aureus subsp. aureus strain mrsa131) (aka staphylococcus aureus subsp. aureus mrsa131)
E: staphylococcus aureus (staphylococcus aureus subsp. anaerobius) (aka staphylococcus aureus)
F: None of the above. | [E] |
<Instruct>: Given the context 'However, while nonpolar deletion of SA1665 was shown to increase oxacillin resistance levels in several heterogeneously resistant MRSA, its deletion had no effect on mecA transcription or PBP2a production.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus subsp. aureus str. usa300 (aka staphylococcus aureus subsp. aureus usa300)
B: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
C: staphylococcus pyogenes aureus (aka staphylococcus aureus)
D: staphylococcus aureus subsp. aureus str. mrsa_pr1 (aka staphylococcus aureus subsp. aureus mrsa_pr1)
E: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
F: None of the above. | [C] |
<Instruct>: Given the context 'The resulting plasmid, pME20, was transformed into E. coli BL21 for expression of recombinant nHis6-SA1665 protein.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli bl21]
<Options>: A: escherichia coli str. bl21(de3) (aka escherichia coli bl21(de3))
B: escherichia coli str. bl21-gold(de3)plyss ag (aka escherichia coli 'bl21-gold(de3)plyss ag')
C: escherichia coli strain mg1657 (aka escherichia coli mg1657)
D: escherichia coli strain 1520 (aka escherichia coli 1520)
E: escherichia coli bl21 (escherichia coli strain bl21) (aka escherichia coli bl21)
F: None of the above. | [E] |
<Instruct>: Given the context 'To maximise the abundance of soluble protein produced, cultures were grown in osmotic shock medium at 37°C (1 g/l NaCl, 16 g/l tryptone, 10 g/l yeast, 1 M sorbitol, 10 mM betaine, modified from [33]) to an OD600 nm of 0.5, cooled briefly on ice, then induced by adding 100 μM IPTG and growing overnight at 22°C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomyces albicans (aka candida albicans)
B: saccharomyces cerevisiae or paradoxus (aka saccharomyces cf. cerevisiae/paradoxus)
C: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
D: saccharomyces lactis (aka kluyveromyces lactis)
E: saccharomycotina (budding yeasts & others) (aka saccharomycotina)
F: None of the above. | [C] |
<Instruct>: Given the context '[36].
Cloning of SA1665 for complementation
A 1533-bp DNA fragment, containing SA1665 together with 690-bp of upstream and 379-bp of downstream DNA, was amplified from strain CHE482 using primers me94BamHI/me94Asp718 (Table 2) and cloned into the E. coli/S. aureus shuttle vectors pAW17 and pBUS1 [37], creating the complementing plasmids pME26 and pME27, respectively.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli; s. aureus]
<Options>: A: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
B: escherichia
C: enterobacteriales (aka enterobacterales)
D: staphylococcus aureus (staphylococcus aureus subsp. anaerobius) (aka staphylococcus aureus)
E: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
F: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
G: staphylococcus aureus subsp. aureus col (staphylococcus aureus col) (aka staphylococcus aureus subsp. aureus col)
H: bacillus coli (aka escherichia coli)
I: escherichia coli (strain b) (aka escherichia coli b)
J: staphylococcus sp. s
K: None of the above. | [H; D] |
<Instruct>: Given the context '[36].
Cloning of SA1665 for complementation
A 1533-bp DNA fragment, containing SA1665 together with 690-bp of upstream and 379-bp of downstream DNA, was amplified from strain CHE482 using primers me94BamHI/me94Asp718 (Table 2) and cloned into the E. coli/S. aureus shuttle vectors pAW17 and pBUS1 [37], creating the complementing plasmids pME26 and pME27, respectively.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli; s. aureus]
<Options>: A: staphylococcus (aurococcus) (aka staphylococcus)
B: staphylococcus simulans staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
C: escherichia/shigella coli (aka escherichia coli)
D: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
E: enterobacteriales (aka enterobacterales)
F: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
G: enterobacteria (aka enterobacteriaceae)
H: staphylococcus aureus subsp. anaerobius (aka staphylococcus aureus)
I: enterobacteriaceae bacterium
J: escherichia coli b (escherichia coli (strain b)) (aka escherichia coli b)
K: None of the above. | [C; H] |
<Instruct>: Given the context '[36].
Cloning of SA1665 for complementation
A 1533-bp DNA fragment, containing SA1665 together with 690-bp of upstream and 379-bp of downstream DNA, was amplified from strain CHE482 using primers me94BamHI/me94Asp718 (Table 2) and cloned into the E. coli/S. aureus shuttle vectors pAW17 and pBUS1 [37], creating the complementing plasmids pME26 and pME27, respectively.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli; s. aureus]
<Options>: A: staphylococcus simulans staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
B: enterobacteria (aka enterobacteriaceae)
C: staphylococcus aureus pa (staphylococcus aureus strain pa) (aka staphylococcus aureus pa)
D: enterobacteriaceae bacterium
E: staphylococcus aureus subsp. anaerobius (aka staphylococcus aureus)
F: escherichia coli b (escherichia coli (strain b)) (aka escherichia coli b)
G: enterobacteriales (aka enterobacterales)
H: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
I: staphylococcus (aurococcus) (aka staphylococcus)
J: None of the above. | [J; E] |
<Instruct>: Given the context 'PBP2a detection was performed using monoclonal PBP2a antibody (1:20000) from the MRSA-screen kit (Denka Seiken).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mrsa]
<Options>: A: staphylococcus aureus m2
B: staphylococcus staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
C: micrococcus pyogenes (aka staphylococcus aureus)
D: staphylococcus aureus subsp. aureus strain mrsa_pr1 (aka staphylococcus aureus subsp. aureus mrsa_pr1)
E: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
F: None of the above. | [C] |
<Instruct>: Given the context 'The Caenorhabditis elegans genome contains monomorphic minisatellites and simple sequences.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: caenorhabditis
B: drosophila elegans
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: uronema elegans
E: myzomyia elegans (aka anopheles elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'Here we demonstrate the presence of sequences in the genome of the nematode Caenorhabditis elegans which are homologous to two sets of short sequence DNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: cyclostrongylus elegans
B: drosophila elegans
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
E: polyzonia elegans
F: None of the above. | [C] |
<Instruct>: Given the context 'Images
Volume 17 Number 23 1989 Nucleic Acids Research
The Caenorhabds elegans genome contains monomorphic minisatellites and simple sequences Andrd G.Uitterlinden, P.Eline Slagboom, Thomas E.Johnsonl and Jan Vijg
Department of Molecular Biology, TNO Institute for Experimental Gerontology, PO Box 5815, 2280 HV Rijswijk, The Netherlands and lInstitute for Behavioral Genetics, University of Colorado, Boulder, CO 80309, USA
Received October 27, 1989; Accepted November 3, 1989
ABSTRACT
Many species have been shown to contain tandemly repeated short sequence DNA kinown as minisatellites and simple sequence motifs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabds elegans]
<Options>: A: drosophila elegans
B: elegans subgroup (in: flies)
C: cyclostrongylus elegans
D: rhabditis elegans (aka caenorhabditis elegans)
E: rhabdonella elegans
F: None of the above. | [D] |
<Instruct>: Given the context 'Here we demonstrate the presence of sequences in the genome of the nematode Caenorhabditis elegans which are homologous to two sets of short sequence DNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: uronema elegans
B: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
C: bactris elegans
D: rhabditis elegans (aka caenorhabditis elegans)
E: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'Here we demonstrate that the genome of the nematode Caenorhabditis elegans contains sequences that are homologous to the minisatellite core sequence 33.6 (1) and to the simple sequence motif (AGC)n.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: caenorhabditis
B: uronema elegans
C: rhabditis elegans (aka caenorhabditis elegans)
D: enyo elegans (aka zodarion elegans)
E: caenorhabditis vulgaris (aka caenorhabditis remanei)
F: None of the above. | [C] |
<Instruct>: Given the context 'Surprisingly, these sequences did not display polymorphism when two independent C. elegans strains, Bristol and Bergerac, were compared.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
B: elegans subgroup (in: mosquitos)
C: bactris elegans
D: zodarion elegans (enyo elegans) (aka zodarion elegans)
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Nucleic Acids Research
C. elegans
N 0$ 8
_ _
: , s , ..e :*. ,~ :::::
.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis
B: theocolax elegans
C: uronema elegans
D: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
E: elegans subgroup (in: flies)
F: None of the above. | [D] |
<Instruct>: Given the context 'I and Eco RI digested genomic DNA isolated from the two C. elegans strains Bristol (N) and Bergerac (B).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: uca elegans (aka tubuca elegans)
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: caenorhabditis sp.
E: myzomyia elegans (aka anopheles elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'In Figure 1 the hybridization patterns are shown of C. elegans genomic DNA digested with Hae II, Rsa I and Eco RI, and subsequently hybridized to minisatellite core probe 33.6, the simple sequence probe (AGC)n and Tcl.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: mosquitos)
B: caenorhabditis
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: uronema elegans
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'In Figure 1 the hybridization patterns are shown of C. elegans genomic DNA digested with Hae II, Rsa I and Eco RI, and subsequently hybridized to minisatellite core probe 33.6, the simple sequence probe (AGC)n and Tcl.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uronema elegans
B: elegans subgroup (in: mosquitos)
C: caenorhabditis
D: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
E: None of the above. | [E] |
<Instruct>: Given the context 'However, identical hybridization patterns for the two strains with the three enzymes tested indicated that in C. elegans these sequences are monomorphic (Fig. 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis sp.
B: uronema elegans
C: zodarion elegans (enyo elegans) (aka zodarion elegans)
D: cyclostrongylus elegans
E: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Based on the number of hybridizing bands we estimate the C. elegans genome to contain about 30 33.6 homologous loci and about 20 (AGC)n homologous loci.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: caenorhabditis
C: rhabditis elegans (aka caenorhabditis elegans)
D: cyclostrongylus elegans
E: drosophila elegans
F: None of the above. | [C] |
<Instruct>: Given the context 'It should be noted, however, that at least in humans, a substantial part of the minisatellites detected by core probes also displays high levels of monomorphism as analysed by cloning (1) or by two-dimensional DNA fingerprinting (5).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans]
<Options>: A: animals (aka metazoa)
B: hominidae (great apes) (aka hominidae)
C: homo sapiens (human) (aka homo sapiens)
D: homo (humans) (aka homo)
E: birds (aka aves)
F: None of the above. | [C] |
<Instruct>: Given the context 'Indeed, Eide and Anderson (7) showed that tandemly repeated duplications in the unc-54 gene of C. elegans revert at high frequencies.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: zodarion elegans (enyo elegans) (aka zodarion elegans)
B: rhabditis elegans (aka caenorhabditis elegans)
C: caenorhabditis
D: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
E: drosophila elegans
F: None of the above. | [B] |
<Instruct>: Given the context 'A more likely explanation for the monomorphic nature of the sequences detected with 33.6 and (AGC)n in C. elegans is selection against sequence variants at these loci.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caromyxa elegans (aka mutinus elegans)
B: zodarion elegans (enyo elegans) (aka zodarion elegans)
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: caenorhabditis
E: elegans subgroup (in: flies)
F: None of the above. | [C] |
<Instruct>: Given the context 'An important step in understanding this phenomenon will therefore be the isolation and analysis of individual homologous minisatellite and simple sequence loci from a genomic library of C. elegans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: drosophila elegans
B: zodarion elegans (enyo elegans) (aka zodarion elegans)
C: uronema elegans
D: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
E: elegans subgroup (in: flies)
F: None of the above. | [D] |
<Instruct>: Given the context 'In the second study, adult (3–6 m) BALB/c mice received an intraperitoneal (i.p.) injection of vehicle or minocycline (50 mg/kg) for three consecutive days.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: peromyscus
B: mus (aka mus <subgenus>) (aka mus <subgenus>)
C: mus musculus (house mouse) (aka mus musculus)
D: mus sp. (mice (aka mus sp.))
E: mus cricetus (aka cricetus cricetus)
F: None of the above. | [C] |
<Instruct>: Given the context 'On the third day, mice were also injected (i.p.) with saline or Escherichia coli LPS (0.33 mg/kg) and behavior (i.e., sickness and anhedonia) and markers of neuroinflammation (i.e., microglia activation and inflammatory cytokines) were determined.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice; escherichia coli]
<Options>: A: escherichia coli (escherichia/shigella coli) (aka escherichia coli)
B: peromyscus
C: escherichia phage
D: escherichia
E: eastern european house mouse (aka mus musculus musculus)
F: unspecified coliform bacterium
G: mus domesticus (aka mus musculus domesticus)
H: mus cricetus (aka cricetus cricetus)
I: escherichia coli (strain b) (aka escherichia coli b)
J: mouse (aka mus musculus)
K: None of the above. | [J; A] |
<Instruct>: Given the context 'On the third day, mice were also injected (i.p.) with saline or Escherichia coli LPS (0.33 mg/kg) and behavior (i.e., sickness and anhedonia) and markers of neuroinflammation (i.e., microglia activation and inflammatory cytokines) were determined.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice; escherichia coli]
<Options>: A: escherichia coli b (escherichia coli (strain b)) (aka escherichia coli b)
B: mus sp. (mice (aka mus sp.))
C: mus castaneus (aka mus musculus castaneus)
D: e. coli (aka escherichia coli)
E: house mouse (aka mus musculus)
F: escherichia coli 1a
G: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
H: enterobacteriaceae bacterium
I: peromyscus
J: bacteria (ex cavalier-smith 1987) (aka bacteria)
K: None of the above. | [E; D] |
<Instruct>: Given the context 'In the final study, adult and aged BALB/c mice were treated with the same minocycline and LPS injection regimen and markers of neuroinflammation were determined.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mouse (aka mus musculus)
B: western european house mouse (aka mus musculus domesticus)
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: mus (aka mus <genus>) (aka mus <genus>)
E: peromyscus
F: None of the above. | [A] |
<Instruct>: Given the context 'Moreover, minocycline facilitated the recovery from sickness behavior (i.e., anorexia, weight loss, and social withdrawal) and prevented anhedonia in adult mice challenged with LPS.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus cricetus (aka cricetus cricetus)
B: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
C: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
D: house mouse (aka mus musculus)
E: mouse (aka mus <genus>)
F: None of the above. | [D] |
<Instruct>: Given the context 'Finally, in aged mice, where exaggerated neuroinflammation was elicited by LPS, minocycline pretreatment was still effective in markedly reducing mRNA levels of IL-1β, TLR2 and IDO in the hippocampus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
B: western european house mouse (aka mus musculus domesticus)
C: mouse (aka mus <genus>)
D: mus <subgenus> (mus (aka mus <subgenus>))
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Moreover, in the brain of rats, minocycline abrogates microglial expression of CD11b and MHC II through a protein kinase-c dependent mechanism [45].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rats]
<Options>: A: rattus norvegicus albus
B: rats (aka rattus sp.) (aka rattus sp.)
C: brown rat (aka rattus norvegicus)
D: rattus rattus (rattus wroughtoni) (aka rattus rattus)
E: rats (aka rattus) (aka rattus)
F: None of the above. | [C] |
<Instruct>: Given the context 'Moreover, our data show that minocycline pretreatment attenuated LPS-induced weight loss, social withdrawal, and anhedonia in adult mice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus castaneus (aka mus musculus castaneus)
B: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
C: mouse (aka mus musculus)
D: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
E: eastern european house mouse (aka mus musculus musculus)
F: None of the above. | [C] |
<Instruct>: Given the context 'The attenuation of sickness behavior was paralleled with minocycline dependent decrease in markers of neuroinflammation (IL-1β, TLR2, and IDO) in adult and aged mice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus domesticus (aka mus musculus domesticus)
B: mus castaneus (aka mus musculus castaneus)
C: house mouse (aka mus musculus)
D: mus cricetus (aka cricetus cricetus)
E: eastern european house mouse (aka mus musculus musculus)
F: None of the above. | [C] |
<Instruct>: Given the context 'Methods
Animals
Male BALB/c mice, adults (3 month old) and juvenile (3–4 week old) were purchased from Harlan (Indianapolis, IN).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mouse (aka mus musculus)
B: mus cricetus (aka cricetus cricetus)
C: mus sp. (mice (aka mus sp.))
D: mus (aka mus <genus>) (aka mus <genus>)
E: eastern european house mouse (aka mus musculus musculus)
F: None of the above. | [A] |
<Instruct>: Given the context 'For age comparisons, male BALB/c mice (3–4 and 20–22 month old) were purchased from the National Institute on Aging specific pathogen free colony.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculus (house mouse) (aka mus musculus)
B: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
C: mus castaneus (aka mus musculus castaneus)
D: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
E: eastern european house mouse (aka mus musculus musculus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Upon arrival, mice were individually housed in polypropylene cages and maintained at 21°C under a 12 h light: 12 h dark cycle with ad libitum access to water and rodent chow.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus <genus> (mice (aka mus <genus>))
B: mus sp. (mice (aka mus sp.))
C: western european house mouse (aka mus musculus domesticus)
D: mus <subgenus> (mus (aka mus <subgenus>))
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Upon arrival, mice were individually housed in polypropylene cages and maintained at 21°C under a 12 h light: 12 h dark cycle with ad libitum access to water and rodent chow.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus <genus> (mice (aka mus <genus>))
B: mus sp. (mice (aka mus sp.))
C: western european house mouse (aka mus musculus domesticus)
D: mus <subgenus> (mus (aka mus <subgenus>))
E: None of the above. | [E] |
<Instruct>: Given the context 'At the end of each study, mice were examined postmortem for gross signs of disease (e.g., splenomeglia or tumors).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus castaneus (aka mus musculus castaneus)
B: mus <subgenus> (mus (aka mus <subgenus>))
C: peromyscus
D: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Data from mice determined to be unhealthy were excluded from analysis (< 5%).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: peromyscus
B: mouse (aka mus musculus)
C: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
D: mice (aka mus sp.) (aka mus sp.)
E: mus <subgenus> (mus (aka mus <subgenus>))
F: None of the above. | [B] |
<Instruct>: Given the context 'Mice were euthanized by CO2 asphyxiation and whole brains were collected.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: house mouse (aka mus musculus)
B: mus castaneus (aka mus musculus castaneus)
C: mus cricetus (aka cricetus cricetus)
D: mice (aka mus sp.) (aka mus sp.)
E: mus <subgenus> (mus (aka mus <subgenus>))
F: None of the above. | [A] |
<Instruct>: Given the context 'Sucrose preference
To assess sucrose preference, mice were provided two solutions, water or water supplemented with 2% sucrose, in 50 ml conical tubes with stoppers fitted with ball-type sipper tubes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus cricetus (aka cricetus cricetus)
B: eastern european house mouse (aka mus musculus musculus)
C: mus (aka mus <genus>) (aka mus <genus>)
D: mouse (aka mus musculus)
E: mus <subgenus> (mus (aka mus <subgenus>))
F: None of the above. | [D] |
<Instruct>: Given the context 'Prior to testing conditions, all mice were acclimated to the two bottle test choice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
B: mus cricetus (aka cricetus cricetus)
C: house mouse (aka mus musculus)
D: mice (aka mus sp.) (aka mus sp.)
E: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
F: None of the above. | [C] |
<Instruct>: Given the context 'All mice drank both the water and the 2% sucrose solution, but preferred drinking the sucrose over the water (data not shown).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus (aka mus <subgenus>) (aka mus <subgenus>)
B: mus sp. (mice (aka mus sp.))
C: mouse (aka mus musculus)
D: eastern european house mouse (aka mus musculus musculus)
E: mus <genus> (mice (aka mus <genus>))
F: None of the above. | [C] |
<Instruct>: Given the context 'On the day of testing, mice were fluid and food deprived for 2 h prior to testing [50].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mice (aka mus <genus>) (aka mus <genus>)
B: mus (aka mus <subgenus>) (aka mus <subgenus>)
C: mus castaneus (aka mus musculus castaneus)
D: mus domesticus (aka mus musculus domesticus)
E: mus musculus (house mouse) (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'In brief, mice were euthanized by CO2 asphyxiation and blood was collected by cardiac puncture into EDTA coated syringes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
B: eastern european house mouse (aka mus musculus musculus)
C: mus cricetus (aka cricetus cricetus)
D: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
E: mouse (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'For all mouse studies, minocycline (Sigma, St. Louis, MO) was dissolved in sterile water and sonicated to ensure complete solubilization.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mouse]
<Options>: A: mus cricetus (aka cricetus cricetus)
B: mus <subgenus> (mus (aka mus <subgenus>))
C: house mouse (aka mus musculus)
D: mus <genus> (mice (aka mus <genus>))
E: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
F: None of the above. | [C] |
<Instruct>: Given the context 'In the first mouse study, adult male BALB/c mice received an intraperitoneal (i.p.) injection of vehicle or minocycline (50 mg/kg) for three consecutive days.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mouse; mice]
<Options>: A: mus <genus> (mice (aka mus <genus>))
B: mus <subgenus> (mus (aka mus <subgenus>))
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: mice (aka mus <genus>) (aka mus <genus>)
E: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
F: mouse (aka mus musculus)
G: mus molossinus (aka mus musculus molossinus)
H: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
I: None of the above. | [F; F] |
<Instruct>: Given the context 'In the first mouse study, adult male BALB/c mice received an intraperitoneal (i.p.) injection of vehicle or minocycline (50 mg/kg) for three consecutive days.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mouse; mice]
<Options>: A: mus sp. (mice (aka mus sp.))
B: mice (aka mus sp.) (aka mus sp.)
C: peromyscus
D: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
E: eastern european house mouse (aka mus musculus musculus)
F: mus castaneus (aka mus musculus castaneus)
G: mus molossinus (aka mus musculus molossinus)
H: mouse (aka mus musculus)
I: None of the above. | [H; H] |
<Instruct>: Given the context 'On the 3rd day, mice were also injected i.p. with saline or Escherichia coli LPS (0.33 mg/kg; serotype 0127:', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice; escherichia coli]
<Options>: A: mice (aka mus sp.) (aka mus sp.)
B: enterobacteriaceae bacterium
C: enterobacterales (enterobacteriaceae and related endosymbionts) (aka enterobacterales)
D: escherichia phage
E: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
F: mus (aka mus <subgenus>) (aka mus <subgenus>)
G: escherichia/shigella coli (aka escherichia coli)
H: enterobacteria (aka enterobacteriaceae)
I: mus cricetus (aka cricetus cricetus)
J: mus musculus (house mouse) (aka mus musculus)
K: None of the above. | [J; G] |
<Instruct>: Given the context 'On the 3rd day, mice were also injected i.p. with saline or Escherichia coli LPS (0.33 mg/kg; serotype 0127:', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice; escherichia coli]
<Options>: A: mus <genus> (mice (aka mus <genus>))
B: western european house mouse (aka mus musculus domesticus)
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: enterococcus coli (aka escherichia coli)
E: bacteria (ex cavalier-smith 1987) (aka bacteria)
F: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
G: mus musculus (house mouse) (aka mus musculus)
H: enterobacteria (aka enterobacteriaceae)
I: escherichia sp.
J: 'escherichia faecalis' (aka escherichia faecalis)
K: None of the above. | [G; D] |
<Instruct>: Given the context 'The LPS dosage was selected because it elicits a proinflammatory cytokine response in the brain resulting in mild transient sickness behavior in adult mice [13,53].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: house mouse (aka mus musculus)
B: peromyscus
C: mus <subgenus> (mus (aka mus <subgenus>))
D: mice (aka mus <genus>) (aka mus <genus>)
E: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
F: None of the above. | [A] |
<Instruct>: Given the context 'In the second study, adult male BALB/c mice received an i.p. injection with vehicle or minocycline for three consecutive days.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
B: western european house mouse (aka mus musculus domesticus)
C: mus <genus> (mice (aka mus <genus>))
D: peromyscus
E: mouse (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'In a related, but separate study, adult mice were treated with minocycline and LPS as described and anhedonia was assessed 24–39 h following i.p. injection of saline or LPS (0.33 mg/kg) (n = 15).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
B: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
C: house mouse (aka mus musculus)
D: mus castaneus (aka mus musculus castaneus)
E: eastern european house mouse (aka mus musculus musculus)
F: None of the above. | [C] |
<Instruct>: Given the context 'In a related, but separate study, adult mice were treated with minocycline and LPS as described and anhedonia was assessed 24–39 h following i.p. injection of saline or LPS (0.33 mg/kg) (n = 15).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
B: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
C: mus castaneus (aka mus musculus castaneus)
D: eastern european house mouse (aka mus musculus musculus)
E: None of the above. | [E] |
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