instruction stringlengths 225 2.35k | input stringlengths 89 1.5k | response stringclasses 698 values |
|---|---|---|
<Instruct>: Given the context 'Although these strategies were reported to be used among organizations providing services to persons with developmental disabilities in Alberta, there was no description of the organizations, sample size or methodology [51].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [persons]
<Options>: A: this
B: human (aka homo sapiens)
C: probles
D: animals (aka metazoa)
E: cellular organisms (biota) (aka cellular organisms)
F: None of the above. | [B] |
<Instruct>: Given the context 'Although these strategies were reported to be used among organizations providing services to persons with developmental disabilities in Alberta, there was no description of the organizations, sample size or methodology [51].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [persons]
<Options>: A: animals (aka metazoa)
B: cellular organisms (biota) (aka cellular organisms)
C: probles
D: this
E: None of the above. | [E] |
<Instruct>: Given the context 'From the semi-structured interviews, study participants expressed a desire for improved consultation and communication with nurses regarding changes to the health care system [52].
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [participants]
<Options>: A: assessor
B: human (aka homo sapiens)
C: inquisitor
D: kingdom
E: avian (aka aves)
F: None of the above. | [B] |
<Instruct>: Given the context 'CAOT believes that in order to utilize support personnel appropriately, studies on human resource needs for occupational therapy and support personnel are first needed with input from OTs, stakeholders, funders, decision makers and health policy planners [59].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: human (aka homo sapiens)
B: biota (aka cellular organisms)
C: macrobiotus sapiens
D: genus
E: kingdom
F: None of the above. | [A] |
<Instruct>: Given the context 'These issues become more pronounced in rural and remote settings because smaller communities often only have one therapist; hence the systemic pressure of workload demands makes it difficult for the therapist to leave patient care.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: other (aka unidentified)
B: mouse (aka mus musculus)
C: goes
D: human (aka homo sapiens)
E: probles
F: None of the above. | [D] |
<Instruct>: Given the context 'More importantly, the success of implementing and sustaining such strategies requires future research to validate these strategies from the perspective of rehabilitation clinicians and human resource decisions makers (i.e. local government, stakeholders, etc.)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: birds (aka aves)
B: species
C: homo (humans) (aka homo)
D: cellular organisms (biota) (aka cellular organisms)
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'MDL recommended participants for the expert panel and was involved in providing feedback and editing the content of the manuscript.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [participants]
<Options>: A: humans (aka homo)
B: homo sapiens (human) (aka homo sapiens)
C: avian (aka aves)
D: kingdom
E: test organism
F: None of the above. | [B] |
<Instruct>: Given the context 'SJ participated in the design of the study, recommended participants for the expert panel, organized and consolidated strategies, interpreted the data and edited the content of the manuscript.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [participants]
<Options>: A: primate (aka primates)
B: subsection
C: cohort
D: human (aka homo sapiens)
E: inquisitor
F: None of the above. | [D] |
<Instruct>: Given the context 'The ineffectiveness of tobramycin combination therapy in Streptococcus faecium endocarditis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcus faecium]
<Options>: A: enterococcus hirae
B: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
C: streptococcus faecium subsp. casseliflavus (aka enterococcus casseliflavus)
D: brachybacterium faecium
E: sphingobacterium faecium
F: None of the above. | [B] |
<Instruct>: Given the context 'Abstract
A patient required mitral valve replacement following ineffective antibiotic treatment of enterococcal endocarditis caused by Streptococcus faecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; streptococcus faecium]
<Options>: A: this
B: isolate
C: bacteroides faecium
D: humans (aka homo)
E: kingdom
F: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
G: enterenecus faecium (aka candidatus enterenecus faecium)
H: brachybacterium faecium
I: enterococcus casseliflavus (streptococcus faecium subsp. casseliflavus) (aka enterococcus casseliflavus)
J: human (aka homo sapiens)
K: None of the above. | [J; F] |
<Instruct>: Given the context 'Abstract
A patient required mitral valve replacement following ineffective antibiotic treatment of enterococcal endocarditis caused by Streptococcus faecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; streptococcus faecium]
<Options>: A: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
B: brachybacterium faecium
C: enterococcus durans (streptococcus durans) (aka enterococcus durans)
D: enterococcus hirae
E: other (aka unidentified)
F: enterococcus faecalis (streptococcus glycerinaceus) (aka enterococcus faecalis)
G: suborder
H: theraps
I: homo sapiens (human) (aka homo sapiens)
J: subsection
K: None of the above. | [I; A] |
<Instruct>: Given the context 'Initial failure of antibiotic therapy may be related to the known lack of in vitro and in vivo synergy between penicillin and tobramycin against S. faecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
B: enterenecus faecium (aka candidatus enterenecus faecium)
C: avispirillum faecium (aka candidatus avispirillum faecium)
D: enterococcus
E: enterococcus faecium e155
F: None of the above. | [A] |
<Instruct>: Given the context 'THE YALE JOURNAL OF BIOLOGY AND MEDICINE 56 (1983), 243-249
The Ineffectiveness of Tobramycin Combination Therapy
in Streptococcus Faecium Endocarditis
JUDITH A. GOLDSTEIN, M.D.,a HOWARD COHEN, M.D.,a AND
FRANK J. BIA, M.D., M.P.H.a,b
aInfectious Disease Section of the Department of Medicine, and bThe Department of
Laboratory Medicine, Veterans Administration Medical Center,
West Haven, and Yale University School of Medicine,
New Haven, Connecticut
Received July 11, 1983
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcus faecium]
<Options>: A: sphingobacterium faecium
B: enterococcus hirae
C: streptococcus faecalis (aka enterococcus faecalis)
D: streptococcus avium (aka enterococcus avium)
E: streptococcus faecium (aka enterococcus faecium)
F: None of the above. | [E] |
<Instruct>: Given the context 'A patient required mitral valve replacement following ineffective antibiotic treatment of enterococcal endocarditis caused by Streptococcusfaecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; streptococcusfaecium]
<Options>: A: theraps
B: subsection
C: homo sapiens (human) (aka homo sapiens)
D: enterococcus plantarum
E: data
F: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
G: genus
H: streptococcus faecium (aka enterococcus faecium)
I: enterococcus faecalis (streptococcus glycerinaceus) (aka enterococcus faecalis)
J: streptococcus penaeicida
K: None of the above. | [C; H] |
<Instruct>: Given the context 'A patient required mitral valve replacement following ineffective antibiotic treatment of enterococcal endocarditis caused by Streptococcusfaecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; streptococcusfaecium]
<Options>: A: human (aka homo sapiens)
B: suborder
C: humans (aka homo)
D: streptococcus penaeicida
E: genus
F: enterococcus florum
G: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
H: enterococcus cecorum (streptococcus cecorum) (aka enterococcus cecorum)
I: streptococcus faecalis (aka enterococcus faecalis)
J: species
K: None of the above. | [A; G] |
<Instruct>: Given the context 'Initial failure of antibiotic therapy may be related to the known lack of in vitro and in vivo synergy between penicillin and tobramycin against S. faecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterococcus proteiformis (aka enterococcus faecalis)
B: streptococcus faecium (aka enterococcus faecium)
C: 'staphylococcus faecalis' (aka staphylococcus faecalis)
D: enterococcus faecium e155
E: enterococcus hirae
F: None of the above. | [B] |
<Instruct>: Given the context 'The group D enterococci include three main species S. faecalis, S. faecium, and S. durans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis; s. faecium; s. durans]
<Options>: A: enterocoque (aka enterococcus faecalis)
B: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
C: streptococcus anginosus subsp. anginosus
D: streptococcus faecium (aka enterococcus faecium)
E: 'staphylococcus faecalis' (aka staphylococcus faecalis)
F: streptococcus downei (streptococcus downensis) (aka streptococcus downei)
G: streptococcus hominis
H: enterococcus
I: corynebacterium faecium
J: enterococcus gallinarum (streptococcus gallinarum) (aka enterococcus gallinarum)
K: streptococcus durans (aka enterococcus durans)
L: avispirillum faecium (aka candidatus avispirillum faecium)
M: streptococcus entericus
N: bacteroides faecalis
O: None of the above. | [A; D; K] |
<Instruct>: Given the context 'The group D enterococci include three main species S. faecalis, S. faecium, and S. durans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis; s. faecium; s. durans]
<Options>: A: streptococcus suis
B: streptococcus entericus
C: enterococcus faecium e155
D: bacteroides faecium
E: enterococcus plantarum
F: streptococcus humanilactis
G: streptococcus infantis
H: enterococcus durans (streptococcus durans) (aka enterococcus durans)
I: clostridium faecium
J: enterococcus coli (aka escherichia coli)
K: enterenecus faecium (aka candidatus enterenecus faecium)
L: streptococcus faecalis (aka enterococcus faecalis)
M: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
N: streptococcus mutans
O: None of the above. | [L; M; H] |
<Instruct>: Given the context 'The group D enterococci include three main species S. faecalis, S. faecium, and S. durans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis; s. faecium; s. durans]
<Options>: A: streptococcus cecorum (aka enterococcus cecorum)
B: enterococcus coli (aka escherichia coli)
C: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
D: enterococcus durans (streptococcus durans) (aka enterococcus durans)
E: enterococcus faecium e155
F: streptococcus fermentans
G: streptococcus mutans
H: enterococcus hirae
I: enterenecus faecium (aka candidatus enterenecus faecium)
J: streptococcus faecium (aka enterococcus faecium)
K: durandea
L: streptococcus hominis
M: sphingobacterium faecium
N: streptococcus vulneris
O: streptococcus liquefaciens (aka enterococcus faecalis)
P: None of the above. | [O; J; D] |
<Instruct>: Given the context 'S. faecium cause a minority of all cases of enterococcal endocarditis, in those instances in which enterococci have been speciated [3], but they have been more resistant both to penicillin and penicillin-aminoglycoside combinations than S. faecalis [4,5,6].
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; s. faecalis]
<Options>: A: enterococcus plantarum
B: enterococcus hirae
C: streptococcus mutans
D: enterococcus
E: streptococcus liquefaciens (aka enterococcus faecalis)
F: streptococcus faecium (aka enterococcus faecium)
G: brachybacterium faecium
H: 'staphylococcus faecalis' (aka staphylococcus faecalis)
I: enterococcus coli (aka escherichia coli)
J: None of the above. | [F; E] |
<Instruct>: Given the context 'S. faecium cause a minority of all cases of enterococcal endocarditis, in those instances in which enterococci have been speciated [3], but they have been more resistant both to penicillin and penicillin-aminoglycoside combinations than S. faecalis [4,5,6].
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; s. faecalis]
<Options>: A: sphingobacterium faecium
B: enterocoque (aka enterococcus faecalis)
C: enterococcus plantarum
D: enterococcus faecium e155
E: streptococcus faecium (aka enterococcus faecium)
F: streptococcus gallinarum (aka enterococcus gallinarum)
G: enterenecus faecium (aka candidatus enterenecus faecium)
H: brachybacterium faecium
I: enterococcus
J: enterococcus cecorum (streptococcus cecorum) (aka enterococcus cecorum)
K: None of the above. | [E; B] |
<Instruct>: Given the context 'We describe a 64-year-old man with S. faecium endocarditis in whom a six-week course of ampicillin and tobramycin, followed by additional courses of penicillin and other aminoglycosides, failed to eradicate the organism from the patient's mitral valve.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [man; s. faecium; patient]
<Options>: A: streptococcus faecium (aka enterococcus faecium)
B: species
C: cancer
D: kingdom
E: birds (aka aves)
F: genus
G: enterococcus hirae
H: human (aka homo sapiens)
I: corynebacterium faecium
J: avispirillum faecium (aka candidatus avispirillum faecium)
K: probles
L: enterococcus
M: None of the above. | [H; A; H] |
<Instruct>: Given the context 'We describe a 64-year-old man with S. faecium endocarditis in whom a six-week course of ampicillin and tobramycin, followed by additional courses of penicillin and other aminoglycosides, failed to eradicate the organism from the patient's mitral valve.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [man; s. faecium; patient]
<Options>: A: neandertal man (aka homo sapiens neanderthalensis)
B: suborder
C: streptococcus faecalis (aka enterococcus faecalis)
D: humans (aka homo)
E: homo sapiens (human) (aka homo sapiens)
F: data
G: avispirillum faecium (aka candidatus avispirillum faecium)
H: mus (aka mus <subgenus>) (aka mus <subgenus>)
I: enterococcus florum
J: isolate
K: circe
L: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
M: mus <genus> (mice (aka mus <genus>))
N: clostridium faecium
O: None of the above. | [E; L; E] |
<Instruct>: Given the context 'We describe a 64-year-old man with S. faecium endocarditis in whom a six-week course of ampicillin and tobramycin, followed by additional courses of penicillin and other aminoglycosides, failed to eradicate the organism from the patient's mitral valve.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [man; s. faecium; patient]
<Options>: A: mus musculus (house mouse) (aka mus musculus)
B: enterococcus florum
C: enterococcus proteiformis (aka enterococcus faecalis)
D: kingdom
E: suborder
F: goes
G: mus <subgenus> (mus (aka mus <subgenus>))
H: neandertal man (aka homo sapiens neanderthalensis)
I: circe
J: theraps
K: streptococcus faecium (aka enterococcus faecium)
L: human (aka homo sapiens)
M: corynebacterium faecium
N: brachybacterium faecium
O: None of the above. | [L; K; L] |
<Instruct>: Given the context 'We describe a 64-year-old man with S. faecium endocarditis in whom a six-week course of ampicillin and tobramycin, followed by additional courses of penicillin and other aminoglycosides, failed to eradicate the organism from the patient's mitral valve.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [man; s. faecium; patient]
<Options>: A: circe
B: neandertal man (aka homo sapiens neanderthalensis)
C: mus musculus (house mouse) (aka mus musculus)
D: goes
E: corynebacterium faecium
F: mus <subgenus> (mus (aka mus <subgenus>))
G: enterococcus proteiformis (aka enterococcus faecalis)
H: theraps
I: brachybacterium faecium
J: kingdom
K: enterococcus florum
L: suborder
M: human (aka homo sapiens)
N: None of the above. | [M; N; M] |
<Instruct>: Given the context 'This case is of interest because therapeutic failure of ampicillin and tobramycin in S. faecium endocarditis has not been reported previously, but might have been predicted on the basis of previous in vitro and in vivo studies [6].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: streptococcus faecium (aka enterococcus faecium)
B: enterenecus faecium (aka candidatus enterenecus faecium)
C: enterococcus hirae
D: enterococcus
E: enterococcus casseliflavus (streptococcus faecium subsp. casseliflavus) (aka enterococcus casseliflavus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Although the need for both a penicillin derivative and an aminoglycoside in the therapy of enterococcal endocarditis is widely known, it is important to distinguish between the differing efficacies of penicillin-aminoglycoside combinations for treating various species of enterococci such as S. faecium.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterococcus florum
B: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
C: sphingobacterium faecium
D: enterococcus hirae
E: enterenecus faecium (aka candidatus enterenecus faecium)
F: None of the above. | [B] |
<Instruct>: Given the context 'In March 1981, the patient was admitted to his community hospital where evaluation revealed a new apical systolic murmur radiating to the axilla.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: aides
B: mouse (aka mus musculus)
C: proxys
D: species
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Serum bactericidal titers against the organism, obtained during peak antibiotic levels, were 1:8 or greater on several occasions, and blood cultures were negative while the patient was receiving antibiotics.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: suborder
B: proxys
C: humans (aka homo)
D: human (aka homo sapiens)
E: goes
F: None of the above. | [D] |
<Instruct>: Given the context 'Three separate morphologic colony variants were isolated from blood, each identified as S. faecium by Dr. R.R. Facklam (Center for Disease Control, Atlanta, Georgia).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterococcus
B: enterococcus faecium e155
C: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
D: bacteroides faecium
E: clostridium faecium
F: None of the above. | [C] |
<Instruct>: Given the context 'The patient received intravenous penicillin (20 million units per day) and gentamicin (3 mg per kg per day) for six weeks with improvement.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: isolate
B: homo sapiens (human) (aka homo sapiens)
C: goes
D: proxys
E: theraps
F: None of the above. | [B] |
<Instruct>: Given the context 'Multiple blood cultures taken while the patient was receiving antibiotics were negative, as were those obtained 48 and 72 hours after discontinuation of antibiotics.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: theraps
B: subsection
C: human (aka homo sapiens)
D: cancer
E: aides
F: None of the above. | [C] |
<Instruct>: Given the context '244
S. FAECIUM ENDOCARDITIS
Third Admission (August 12-October 4, 1981)
Withing a week following discharge, the patient again developed fever, nocturnal sweats, and malaise.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient]
<Options>: A: enterococcus faecium e155
B: enterococcus
C: genus
D: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
E: streptococcus faecium subsp. casseliflavus (aka enterococcus casseliflavus)
F: human (aka homo sapiens)
G: isolate
H: kingdom
I: circe
J: 'staphylococcus faecalis' (aka staphylococcus faecalis)
K: None of the above. | [D; F] |
<Instruct>: Given the context '244
S. FAECIUM ENDOCARDITIS
Third Admission (August 12-October 4, 1981)
Withing a week following discharge, the patient again developed fever, nocturnal sweats, and malaise.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient]
<Options>: A: enterococcus florum
B: corynebacterium faecium
C: subsection
D: kingdom
E: enterococcus proteiformis (aka enterococcus faecalis)
F: isolate
G: enterococcus
H: suborder
I: streptococcus faecium (aka enterococcus faecium)
J: homo sapiens (human) (aka homo sapiens)
K: None of the above. | [I; J] |
<Instruct>: Given the context 'S. faecium (large colony morphotype, and poorly growing small colony morphotype) grew from six sets of blood cultures obtained on admission.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: corynebacterium faecium
B: streptococcus faecalis (aka enterococcus faecalis)
C: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
D: enterenecus faecium (aka candidatus enterenecus faecium)
E: enterococcus faecium e155
F: None of the above. | [C] |
<Instruct>: Given the context 'The patient underwent mitral valve replacement, receiving a number 31 porcine Hancock bioprosthesis and bypass graft to the midportion of the LAD.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: human (aka homo sapiens)
B: proxys
C: other (aka unidentified)
D: aides
E: mouse (aka mus musculus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Bacterial and fungal stains were negative but S. faecium grew from fragments of the resected valve.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: corynebacterium faecium
B: sphingobacterium faecium
C: enterococcus proteiformis (aka enterococcus faecalis)
D: enterococcus hirae
E: streptococcus faecium (aka enterococcus faecium)
F: None of the above. | [E] |
<Instruct>: Given the context 'Following surgery the patient received six additional weeks parenteral penicillin and streptomycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: this
B: proxys
C: human (aka homo sapiens)
D: mouse (aka mus musculus)
E: theraps
F: None of the above. | [C] |
<Instruct>: Given the context 'The minimum inhibitory and bactericidal concentrations of penicillin, ampicillin, and tobramycin against the S. faecium isolated from the patient's blood cultures
TABLE 1
Minimum Inhibitory and Bactericidal Concentrations of Antibiotics,
Against Streptococcus faecium Isolates from Blood Cultures
Date Penicillin Ampicillin Tobramycin
Organism Isolated MIC MIC MBC MIC MBC S. faecium, prior to ampicillin/
tobramycin therapy 3/17/81 2 1 2 >32 >32 S. faecium, after ampicillin/
tobramycin therapy
a.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient; streptococcus faecium]
<Options>: A: enterococcus plantarum
B: enterococcus florum
C: kingdom
D: avispirillum faecium (aka candidatus avispirillum faecium)
E: streptococcus faecium (aka enterococcus faecium)
F: brachybacterium faecium
G: streptococcus faecalis (aka enterococcus faecalis)
H: 'staphylococcus faecalis' (aka staphylococcus faecalis)
I: cancer
J: circe
K: homo sapiens (human) (aka homo sapiens)
L: suborder
M: bacteroides faecium
N: None of the above. | [E; K; E] |
<Instruct>: Given the context 'The minimum inhibitory and bactericidal concentrations of penicillin, ampicillin, and tobramycin against the S. faecium isolated from the patient's blood cultures
TABLE 1
Minimum Inhibitory and Bactericidal Concentrations of Antibiotics,
Against Streptococcus faecium Isolates from Blood Cultures
Date Penicillin Ampicillin Tobramycin
Organism Isolated MIC MIC MBC MIC MBC S. faecium, prior to ampicillin/
tobramycin therapy 3/17/81 2 1 2 >32 >32 S. faecium, after ampicillin/
tobramycin therapy
a.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient; streptococcus faecium]
<Options>: A: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
B: avispirillum faecium (aka candidatus avispirillum faecium)
C: bacteroides faecium
D: proxys
E: corynebacterium faecium
F: kingdom
G: mouse (aka mus musculus)
H: clostridium faecium
I: streptococcus faecium subsp. casseliflavus (aka enterococcus casseliflavus)
J: enterenecus faecium (aka candidatus enterenecus faecium)
K: homo sapiens (human) (aka homo sapiens)
L: enterococcus florum
M: isolate
N: None of the above. | [A; K; A] |
<Instruct>: Given the context 'The minimum inhibitory and bactericidal concentrations of penicillin, ampicillin, and tobramycin against the S. faecium isolated from the patient's blood cultures
TABLE 1
Minimum Inhibitory and Bactericidal Concentrations of Antibiotics,
Against Streptococcus faecium Isolates from Blood Cultures
Date Penicillin Ampicillin Tobramycin
Organism Isolated MIC MIC MBC MIC MBC S. faecium, prior to ampicillin/
tobramycin therapy 3/17/81 2 1 2 >32 >32 S. faecium, after ampicillin/
tobramycin therapy
a.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient; streptococcus faecium]
<Options>: A: enterococcus
B: 'staphylococcus faecalis' (aka staphylococcus faecalis)
C: streptococcus faecium (aka enterococcus faecium)
D: aides
E: enterococcus florum
F: clostridium faecium
G: enterococcus plantarum
H: cancer
I: streptococcus avium (aka enterococcus avium)
J: other (aka unidentified)
K: homo sapiens (human) (aka homo sapiens)
L: theraps
M: streptococcus faecalis (aka enterococcus faecalis)
N: sphingobacterium faecium
O: None of the above. | [C; K; C] |
<Instruct>: Given the context 'The minimum inhibitory and bactericidal concentrations of penicillin, ampicillin, and tobramycin against the S. faecium isolated from the patient's blood cultures
TABLE 1
Minimum Inhibitory and Bactericidal Concentrations of Antibiotics,
Against Streptococcus faecium Isolates from Blood Cultures
Date Penicillin Ampicillin Tobramycin
Organism Isolated MIC MIC MBC MIC MBC S. faecium, prior to ampicillin/
tobramycin therapy 3/17/81 2 1 2 >32 >32 S. faecium, after ampicillin/
tobramycin therapy
a.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterococcus faecium e155
B: enterenecus faecium (aka candidatus enterenecus faecium)
C: sphingobacterium faecium
D: streptococcus faecium var. casseliflavus (aka enterococcus casseliflavus)
E: streptococcus faecium (aka enterococcus faecium)
F: None of the above. | [E] |
<Instruct>: Given the context '3- \ "'' ing the effects of various penicillinO aminoglycoside combinations on S. {73 2- \ >, faecium obtained from the patient's
blood cultures immediately prior to mitral valve excision.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: probles
C: other (aka unidentified)
D: goes
E: this
F: None of the above. | [A] |
<Instruct>: Given the context 'Twenty-four hour time-kill curves for penicillin in combination with various aminoglycosides were performed by Dr. Robert Moellering on the S. faecium isolated from the patient's blood immediately prior to mitral valve excision and replacement (Fig. 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient]
<Options>: A: streptococcus faecium (aka enterococcus faecium)
B: enterococcus casseliflavus (streptococcus faecium subsp. casseliflavus) (aka enterococcus casseliflavus)
C: probles
D: sphingobacterium faecium
E: brachybacterium faecium
F: proxys
G: genus
H: human (aka homo sapiens)
I: enterococcus florum
J: kingdom
K: None of the above. | [A; H] |
<Instruct>: Given the context 'Twenty-four hour time-kill curves for penicillin in combination with various aminoglycosides were performed by Dr. Robert Moellering on the S. faecium isolated from the patient's blood immediately prior to mitral valve excision and replacement (Fig. 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient]
<Options>: A: this
B: brachybacterium faecium
C: 'staphylococcus faecalis' (aka staphylococcus faecalis)
D: avispirillum faecium (aka candidatus avispirillum faecium)
E: cancer
F: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
G: human (aka homo sapiens)
H: circe
I: enterococcus hirae
J: theraps
K: None of the above. | [F; G] |
<Instruct>: Given the context 'Twenty-four hour time-kill curves for penicillin in combination with various aminoglycosides were performed by Dr. Robert Moellering on the S. faecium isolated from the patient's blood immediately prior to mitral valve excision and replacement (Fig. 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient]
<Options>: A: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
B: avispirillum faecium (aka candidatus avispirillum faecium)
C: circe
D: enterococcus hirae
E: 'staphylococcus faecalis' (aka staphylococcus faecalis)
F: this
G: theraps
H: brachybacterium faecium
I: cancer
J: None of the above. | [A; J] |
<Instruct>: Given the context 'Although S. faecalis represents the majority of clinical enterococcal isolates, S. faecium nonetheless comprises 5-10 percent of these isolates in some series [3,4].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis; s. faecium]
<Options>: A: enterococcus plantarum
B: streptococcus faecalis (aka enterococcus faecalis)
C: enterococcus
D: enterococcus cecorum (streptococcus cecorum) (aka enterococcus cecorum)
E: streptococcus faecium (aka enterococcus faecium)
F: bacteroides faecium
G: enterenecus faecium (aka candidatus enterenecus faecium)
H: None of the above. | [B; E] |
<Instruct>: Given the context 'Although S. faecalis represents the majority of clinical enterococcal isolates, S. faecium nonetheless comprises 5-10 percent of these isolates in some series [3,4].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis; s. faecium]
<Options>: A: clostridium faecium
B: streptococcus faecalis (aka enterococcus faecalis)
C: streptococcus gallinarum (aka enterococcus gallinarum)
D: enterococcus plantarum
E: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
F: enterenecus faecium (aka candidatus enterenecus faecium)
G: enterocoque (aka enterococcus faecalis)
H: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
I: enterococcus faecium e155
J: streptococcus faecium (aka enterococcus faecium)
K: None of the above. | [G; H] |
<Instruct>: Given the context 'The MIC of penicillin against S. faecium is higher and this organism is more resistant to a number of different combinations of penicillin and various aminoglycosides than is S. faecalis', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; s. faecalis]
<Options>: A: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
B: enterococcus faecium e155
C: enterococcus casseliflavus (streptococcus faecium subsp. casseliflavus) (aka enterococcus casseliflavus)
D: enterococcus plantarum
E: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
F: enterococcus coli (aka escherichia coli)
G: clostridium faecium
H: enterococcus proteiformis (aka enterococcus faecalis)
I: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
J: None of the above. | [A; H] |
<Instruct>: Given the context 'The MIC of penicillin against S. faecium is higher and this organism is more resistant to a number of different combinations of penicillin and various aminoglycosides than is S. faecalis', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; s. faecalis]
<Options>: A: bacteroides faecalis
B: enterococcus plantarum
C: enterococcus faecium e155
D: clostridium faecium
E: enterococcus
F: streptococcus liquefaciens (aka enterococcus faecalis)
G: enterococcus gallinarum (streptococcus gallinarum) (aka enterococcus gallinarum)
H: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
I: streptococcus cecorum (aka enterococcus cecorum)
J: enterococcus casseliflavus (streptococcus faecium subsp. casseliflavus) (aka enterococcus casseliflavus)
K: None of the above. | [H; F] |
<Instruct>: Given the context 'Clinically achievable levels of amino
246
S. FAECIUM ENDOCARDITIS
glycosides are generally ineffective against enterococci.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterococcus florum
B: brachybacterium faecium
C: streptococcus faecium (aka enterococcus faecium)
D: enterococcus faecium e155
E: avispirillum faecium (aka candidatus avispirillum faecium)
F: None of the above. | [C] |
<Instruct>: Given the context 'Plasmid-mediated modifying enzymes have been found in both S. faecalis and S. faecium' [12].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis; s. faecium]
<Options>: A: 'staphylococcus faecalis' (aka staphylococcus faecalis)
B: streptococcus mutans
C: streptococcus faecalis (aka enterococcus faecalis)
D: bacteroides faecalis
E: clostridium faecium
F: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
G: enterococcus coli (aka escherichia coli)
H: enterococcus hirae
I: enterococcus cecorum (streptococcus cecorum) (aka enterococcus cecorum)
J: corynebacterium faecium
K: None of the above. | [C; F] |
<Instruct>: Given the context 'Plasmid-mediated modifying enzymes have been found in both S. faecalis and S. faecium' [12].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis; s. faecium]
<Options>: A: brachybacterium faecium
B: enterenecus faecium (aka candidatus enterenecus faecium)
C: enterocoque (aka enterococcus faecalis)
D: enterococcus plantarum
E: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
F: streptococcus faecium (aka enterococcus faecium)
G: bacteroides faecalis
H: enterococcus faecium e155
I: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
J: None of the above. | [C; F] |
<Instruct>: Given the context 'Combinations of penicillin with kanamycin, tobramycin, sisomicin, and netilmicin have consistently failed to demonstrate synergistic killing of S. faecium in vitro [6].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: bacteroides faecium
B: corynebacterium faecium
C: enterococcus hirae
D: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
E: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
F: None of the above. | [E] |
<Instruct>: Given the context 'Moellering et al. demonstrated in vivo, utilizing the rabbit model of endocarditis, that penicillin and netilmicin were not efficacious in the treatment of endocarditis caused by a low-level aminoglycoside-resistant strain of S. faecium [6].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rabbit; s. faecium]
<Options>: A: oryctolagus cuniculus (japanese white rabbit) (aka oryctolagus cuniculus)
B: clostridium faecium
C: marsh rabbit (aka sylvilagus palustris)
D: streptococcus faecium (aka enterococcus faecium)
E: enterococcus
F: enterenecus faecium (aka candidatus enterenecus faecium)
G: bovidae
H: enterococcus hirae
I: oryctolagus cuniculus cuniculus (lepus cuniculus cuniculus) (aka oryctolagus cuniculus cuniculus)
J: hares (aka lepus)
K: None of the above. | [A; D] |
<Instruct>: Given the context 'Moellering et al. demonstrated in vivo, utilizing the rabbit model of endocarditis, that penicillin and netilmicin were not efficacious in the treatment of endocarditis caused by a low-level aminoglycoside-resistant strain of S. faecium [6].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rabbit; s. faecium]
<Options>: A: bacteroides faecium
B: lepus cuniculus (aka oryctolagus cuniculus)
C: streptococcus faecalis (aka enterococcus faecalis)
D: enterenecus faecium (aka candidatus enterenecus faecium)
E: swamp rabbit (aka sylvilagus aquaticus)
F: enterococcus florum
G: rabbits and hares (aka leporidae)
H: bovidae
I: ox (aka bos taurus) (aka bos taurus)
J: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
K: None of the above. | [B; J] |
<Instruct>: Given the context 'In the present case, the recurrence of S. faecium endocarditis after six weeks of therapy with ampicillin and tobramycin confirms the therapeutic and clinical significance of their data, and emphasizes that tobramycin is not an aminoglycoside to be used for treatment of serious S. faecium infections.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterenecus faecium (aka candidatus enterenecus faecium)
B: streptococcus faecium subsp. casseliflavus (aka enterococcus casseliflavus)
C: streptococcus faecalis (aka enterococcus faecalis)
D: streptococcus faecium (aka enterococcus faecium)
E: corynebacterium faecium
F: None of the above. | [D] |
<Instruct>: Given the context 'Bacterial tolerance has been suggested as a possible basis for therapeutic failures, particularly in the treatment of infections caused by Staphylococcus aureus with defects in the production of autolysins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [staphylococcus aureus]
<Options>: A: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
B: staphylococcus simulans staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
C: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
D: staphylococcus aureus (staphylococcus aureus subsp. anaerobius) (aka staphylococcus aureus)
E: staphylococcus sp.
F: None of the above. | [D] |
<Instruct>: Given the context 'Bacterial tolerance has been suggested as a possible basis for therapeutic failures, particularly in the treatment of infections caused by Staphylococcus aureus with defects in the production of autolysins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [staphylococcus aureus]
<Options>: A: staphylococcus simulans staphylolyticus (aka staphylococcus simulans bv. staphylolyticus)
B: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
C: staphylococcus aureus col (aka staphylococcus aureus subsp. aureus col)
D: staphylococcus sp.
E: None of the above. | [E] |
<Instruct>: Given the context 'Lorian has also described the formation of numerous aberrant cross-walls by S. faecalis grown in the presence of subinhibitory concentrations of penicillin', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis]
<Options>: A: enterococcus gallinarum (streptococcus gallinarum) (aka enterococcus gallinarum)
B: enterococcus cecorum (streptococcus cecorum) (aka enterococcus cecorum)
C: streptococcus faecalis (aka enterococcus faecalis)
D: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
E: enterococcus plantarum
F: None of the above. | [C] |
<Instruct>: Given the context 'MBCs were only slightly higher than MICs for the three S. faecium variants obtained from our patient, and they did not appear to be tolerant strains of S. faecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient]
<Options>: A: enterococcus faecium e155
B: kingdom
C: bacteroides faecium
D: theraps
E: human (aka homo sapiens)
F: mouse (aka mus musculus)
G: other (aka unidentified)
H: enterococcus proteiformis (aka enterococcus faecalis)
I: avispirillum faecium (aka candidatus avispirillum faecium)
J: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
K: None of the above. | [J; E] |
<Instruct>: Given the context 'MBCs were only slightly higher than MICs for the three S. faecium variants obtained from our patient, and they did not appear to be tolerant strains of S. faecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium; patient]
<Options>: A: isolate
B: bacteroides faecium
C: proxys
D: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
E: enterococcus proteiformis (aka enterococcus faecalis)
F: enterococcus florum
G: mouse (aka mus musculus)
H: kingdom
I: enterococcus
J: homo sapiens (human) (aka homo sapiens)
K: None of the above. | [D; J] |
<Instruct>: Given the context 'Alternatively, a
'Wennersten C, Moellering RC Jr: Mechanism of resistance to penicillin-aminoglycoside synergism in Streptococcus faecium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcus faecium]
<Options>: A: streptococcus faecium subsp. casseliflavus (aka enterococcus casseliflavus)
B: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
C: enterococcus faecalis (streptococcus glycerinaceus) (aka enterococcus faecalis)
D: enterenecus faecium (aka candidatus enterenecus faecium)
E: streptococcus durans (aka enterococcus durans)
F: None of the above. | [B] |
<Instruct>: Given the context 'In summary, our patient was treated for Streptococcusfaecium endocarditis with both ampicillin and the aminoglycoside antibiotic, tobramycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; streptococcusfaecium]
<Options>: A: species
B: isolate
C: streptococcus durans (aka enterococcus durans)
D: kingdom
E: enterococcus plantarum
F: homo sapiens (human) (aka homo sapiens)
G: streptococcus faecium (aka enterococcus faecium)
H: data
I: enterococcus florum
J: streptococcus faecalis (aka enterococcus faecalis)
K: None of the above. | [F; G] |
<Instruct>: Given the context 'In summary, our patient was treated for Streptococcusfaecium endocarditis with both ampicillin and the aminoglycoside antibiotic, tobramycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; streptococcusfaecium]
<Options>: A: kingdom
B: species
C: genus
D: 'staphylococcus faecalis' (aka staphylococcus faecalis)
E: human (aka homo sapiens)
F: clostridium faecium
G: streptococcus fermentans
H: streptococcus faecium (aka enterococcus faecium)
I: streptococcus ferus
J: subsection
K: None of the above. | [E; H] |
<Instruct>: Given the context 'In summary, our patient was treated for Streptococcusfaecium endocarditis with both ampicillin and the aminoglycoside antibiotic, tobramycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient; streptococcusfaecium]
<Options>: A: clostridium faecium
B: human (aka homo sapiens)
C: species
D: subsection
E: streptococcus fermentans
F: kingdom
G: 'staphylococcus faecalis' (aka staphylococcus faecalis)
H: streptococcus ferus
I: genus
J: None of the above. | [B; J] |
<Instruct>: Given the context 'The authors also wish to thank Dr. Howard S. Forster for referring this patient to us, Ms. Mary Murray and Deborah Beauvais for manuscript preparation, and Ms. Gertrude Barden, MT (ASCP), MHS, for technical assistance and advice in evaluation of this patient.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patient]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: subsection
C: mouse (aka mus musculus)
D: other (aka unidentified)
E: cancer
F: None of the above. | [A] |
<Instruct>: Given the context 'Facklam RR: Recognition of group D streptococcal species of human origin by biochemical and
physiological tests.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: humans (aka homo)
B: animals (aka metazoa)
C: kingdom
D: species
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Shungu DL, Cornett JB, Shockman GD: Morphological and physiological study of autolytic
defective Streptococcus faecium strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcus faecium]
<Options>: A: clostridium faecium
B: streptococcus faecium subsp. casseliflavus (aka enterococcus casseliflavus)
C: streptococcus faecium (aka enterococcus faecium)
D: brachybacterium faecium
E: enterococcus hirae
F: None of the above. | [C] |
<Instruct>: Given the context 'Moellering RC Jr, Korzeniowski OM, Sande MA, et al: Species-specific resistance to antimicrobial
synergism in Streptococcusfaecium and Streptococcusfaecalis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcusfaecium; streptococcusfaecalis]
<Options>: A: streptococcus fermentans
B: streptococcus cecorum (aka enterococcus cecorum)
C: streptococcus faecalis (aka enterococcus faecalis)
D: streptococcus ferus
E: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
F: enterococcus plantarum
G: streptococcus faecium (aka enterococcus faecium)
H: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
I: streptococcus gallinaceus
J: None of the above. | [G; C] |
<Instruct>: Given the context 'Moellering RC Jr, Korzeniowski OM, Sande MA, et al: Species-specific resistance to antimicrobial
synergism in Streptococcusfaecium and Streptococcusfaecalis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcusfaecium; streptococcusfaecalis]
<Options>: A: enterococcus gallinarum (streptococcus gallinarum) (aka enterococcus gallinarum)
B: sphingobacterium faecium
C: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
D: streptococcus faecalis (aka enterococcus faecalis)
E: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
F: streptococcus humanilactis
G: enterococcus florum
H: streptococcus faecavium (aka candidatus streptococcus faecavium)
I: streptococcus faecium subsp. casseliflavus (aka enterococcus casseliflavus)
J: enterococcus faecalis (streptococcus glycerinaceus) (aka enterococcus faecalis)
K: None of the above. | [E; J] |
<Instruct>: Given the context 'Moellering RC Jr, Murray BE, Schoenbaum SC, et al: A novel mechanism of resistance to penicillin
gentamicin synergism in S. faecalis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecalis]
<Options>: A: streptococcus mutans
B: enterocoque (aka enterococcus faecalis)
C: enterococcus cecorum (streptococcus cecorum) (aka enterococcus cecorum)
D: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
E: enterococcus
F: None of the above. | [B] |
<Instruct>: Given the context 'Krogstad DJ, Korfhagen TR, Moellering RC Jr, et al: Aminoglycoside-inactivating enzymes in
clinical isolates of Streptococcusfaecalis: An explanation for resistance to antibiotic synergism.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcusfaecalis]
<Options>: A: streptococcus gallinaceus
B: streptococcus faecalis (aka enterococcus faecalis)
C: streptococcus ovis
D: streptococcus humanilactis
E: streptococcus faecavium (aka candidatus streptococcus faecavium)
F: None of the above. | [B] |
<Instruct>: Given the context 'J Clin Invest 62:480-486, 1978
S. FAECIUM ENDOCARDITIS 249
12.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterococcus casseliflavus (streptococcus faecium subsp. casseliflavus) (aka enterococcus casseliflavus)
B: brachybacterium faecium
C: avispirillum faecium (aka candidatus avispirillum faecium)
D: sphingobacterium faecium
E: enterococcus faecium (streptococcus faecium) (aka enterococcus faecium)
F: None of the above. | [E] |
<Instruct>: Given the context 'J Clin Invest 62:480-486, 1978
S. FAECIUM ENDOCARDITIS 249
12.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. faecium]
<Options>: A: enterococcus casseliflavus (streptococcus faecium subsp. casseliflavus) (aka enterococcus casseliflavus)
B: brachybacterium faecium
C: avispirillum faecium (aka candidatus avispirillum faecium)
D: sphingobacterium faecium
E: None of the above. | [E] |
<Instruct>: Given the context 'Abstract
A recombinant phage, SpC3, containing a 17 kb genomic DNA insert representing approximately 60% of the 3' portion of the sheep collagen alpha 2 gene, was evaluated by electron microscopic R loop analysis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis
B: ovis ammon aries (aka ovis aries)
C: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
D: cow (aka bos taurus) (aka bos taurus)
E: ovis sp.
F: None of the above. | [B] |
<Instruct>: Given the context 'Images
Nucleic Acids Research
Structural organization of a 17 KB segment of the a2 collagen gene: evaluation by R loop mapping Millie P.Schafer, Charles D.Boyd, Paul Tolstoshev and Ronald G.Crystal
Pulmonary Branch, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20205, USA
Received 13 February 1980
ABSTRACT
A recombinant phage, SpC3, containing a 17 kb genomic DNA insert rep
resenting approximately 60% of the 3' portion of the sheep collagen a2 gene, was evaluated by electron microscopic R loop analysis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis dalli (dall's sheep) (aka ovis dalli)
B: ovis aries vignei (aka ovis vignei)
C: ovis aries (ovis orientalis aries) (aka ovis aries)
D: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
E: cattle (aka bos)
F: None of the above. | [C] |
<Instruct>: Given the context 'The present study further characterizes this portion of the a2
gene by utilizing electron microscopic R loop analysis to map the coding regions (exons) and intervening sequences (introns) contained within the sheep genomic insert of SpC3.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis sp.
B: ovis
C: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
D: suidae (pigs (aka suidae))
E: lambs (aka ovis aries)
F: None of the above. | [E] |
<Instruct>: Given the context 'The sheep a2 collagen recombinant clone, SpC3, containing a portion of the sheep a2 gene, was isolated as previously described (2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: lambs (aka ovis aries)
B: cattle (aka bos)
C: ovis
D: suidae (pigs (aka suidae))
E: cow (aka bos taurus) (aka bos taurus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Briefly,
high molecular weight fetal sheep liver DNA was extracted by the method of Blin and Stafford (3), and 15-20 kb DNA fragments, resulting from partial Eco RI digestion, were isolated and ligated to the left and right arms of Charon 4A.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis aries (ovis orientalis aries) (aka ovis aries)
B: cattle (aka bos)
C: bovidae
D: cow (aka bos taurus) (aka bos taurus)
E: ovis
F: None of the above. | [A] |
<Instruct>: Given the context 'The recombinant DNA was then packaged in vitro and the sheep
genomic library amplified (4-6).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis dalli (dall's sheep) (aka ovis dalli)
B: ovis orientalis aries (aka ovis aries)
C: bovidae
D: ovis
E: ovis aries vignei (aka ovis vignei)
F: None of the above. | [B] |
<Instruct>: Given the context 'Screening of the sheep genomic library was
conducted utilizing [32 P]-labeled fetal sheep tendon type I collagen cDNA and
several positive recombinant phages were isolated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: cattle (aka bos)
B: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
C: sheep (aka ovis aries)
D: ovis sp.
E: suidae (pigs (aka suidae))
F: None of the above. | [C] |
<Instruct>: Given the context 'One recombinant, containing a 17 kb sheep genomic insert, was demonstrated to have coding sequences corresponding to 60% of the 3' end of a2 mRNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis sp.
B: cow (aka bos taurus) (aka bos taurus)
C: sheep (aka ovis aries)
D: dall's sheep (aka ovis dalli)
E: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
F: None of the above. | [C] |
<Instruct>: Given the context 'The construction and screening of the sheep genomic library together with amplification of pCg45 and preparation of high titre lysates of chimaeric
Charon 4A were performed under the physical and biological containment levels specified by the NIH guidelines for recombinant DNA research (11).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: domestic sheep (aka ovis aries)
B: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
C: cattle (aka bos)
D: bovidae
E: ovis
F: None of the above. | [A] |
<Instruct>: Given the context 'Hybridization of fetal sheep tendon type I collagen mRNA to SpC3 DNA
yielded a complex R loop pattern in the region where the sheep genomic insert was expected to be ligated to the arms of the lambda vector, Charon 4A.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: bovidae
B: domestic sheep (aka ovis aries)
C: cow (aka bos taurus) (aka bos taurus)
D: ovis sp.
E: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
F: None of the above. | [B] |
<Instruct>: Given the context 'Hybridization of fetal sheep tendon type I collagen mRNA to SpC3 DNA
yielded a complex R loop pattern in the region where the sheep genomic insert was expected to be ligated to the arms of the lambda vector, Charon 4A.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: cow (aka bos taurus) (aka bos taurus)
B: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
C: ovis sp.
D: bovidae
E: None of the above. | [E] |
<Instruct>: Given the context 'To
confirm that these hybridization events were restricted to the inserted sheep DNA fragment, duplex DNA strands on both sides of this hybridization area were measured.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis sp.
B: ovis orientalis aries (aka ovis aries)
C: cattle (aka bos)
D: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
E: suidae (pigs (aka suidae))
F: None of the above. | [B] |
<Instruct>: Given the context 'Although, by convention, introns are usually sequentially labeled 5' to 3', an opposite order had to be employed in this case as SpC3 does not contain the sequences coding for the 5' end of sheep a2 mRNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis aries vignei (aka ovis vignei)
B: lambs (aka ovis aries)
C: suidae (pigs (aka suidae))
D: cattle (aka bos)
E: ovis sp.
F: None of the above. | [B] |
<Instruct>: Given the context 'A small non-hybridized tail was consistently found in the region where
the right arm of the phage was ligated to the sheep genomic insert (Figure 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: bovidae
B: ovis orientalis aries (aka ovis aries)
C: suidae (pigs (aka suidae))
D: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
E: ovis sp.
F: None of the above. | [B] |
<Instruct>: Given the context 'Electron microscopic visualization of all 17 introns and 18 exons
from hybrid molecules formed between recombinant clone SpC3 DNA and fetal sheep
tendon a2 mRNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: cow (aka bos taurus) (aka bos taurus)
B: ovis orientalis aries (aka ovis aries)
C: ovis sp.
D: ovis
E: cattle (aka bos)
F: None of the above. | [B] |
<Instruct>: Given the context 'Electron microscopic R loop analysis
present in SpC3 DNA1.
of the sheep a2 introns
SpC3 was hybridized to sheep a2 mRNA as described in Materials and Methods; intron lengths were determined by comparison with *X-174 DNA lengths.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: suidae (pigs (aka suidae))
B: ovis orientalis aries (aka ovis aries)
C: bovidae
D: cow (aka bos taurus) (aka bos taurus)
E: ovis
F: None of the above. | [B] |
<Instruct>: Given the context 'Electron microscopic R loop analysis of the sheep a2 exons
present in SpC3 DNA1.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: bovidae
B: ovis dalli (dall's sheep) (aka ovis dalli)
C: lambs (aka ovis aries)
D: ovis sp.
E: suidae (pigs (aka suidae))
F: None of the above. | [C] |
<Instruct>: Given the context '36 q5 - _ 33 130?47 r5 r 6 78?36
SpC3 was hybridized to sheep a2 mRNA as described in M4aterials and
Methods; exon lengths were determined by comparison with pBR322 DNA lengths.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: suidae (pigs (aka suidae))
B: ovis orientalis aries (aka ovis aries)
C: ovis
D: cattle (aka bos)
E: bovidae
F: None of the above. | [B] |
<Instruct>: Given the context 'The largest exon, "a", located on the extreme 3' end of the sheep genomic insert, contained
approximately 800 bp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: suidae (pigs (aka suidae))
B: domestic sheep (aka ovis aries)
C: cow (aka bos taurus) (aka bos taurus)
D: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
E: ovis vignei (ovis orientalis vignei) (aka ovis vignei)
F: None of the above. | [B] |
<Instruct>: Given the context 'Exon "a" and exon "b", the two exons situated on either side of intron 1, coded for around 1000 bases of a2 collagen information; these two
exons contained one-third of the mapped 3,014 DNA bases complementary to a2 mRNA Length distribution and organization of the introns and exons in the sheep genomi c i nsert.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: sheep (aka ovis aries)
B: dall sheep (aka ovis dalli)
C: ovis nivicola (ovis canadensis nivicola) (aka ovis nivicola)
D: ovis
E: cattle (aka bos)
F: None of the above. | [A] |
<Instruct>: Given the context 'Therefore, only 18% of the mapped 17 kb sheep genetic insert actually contained a2 structural information.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: cow (aka bos taurus) (aka bos taurus)
B: ovis dalli (dall's sheep) (aka ovis dalli)
C: ovis vignei (ovis orientalis vignei) (aka ovis vignei)
D: sheep (aka ovis aries)
E: cattle (aka bos)
F: None of the above. | [D] |
<Instruct>: Given the context 'Therefore, only 18% of the mapped 17 kb sheep genetic insert actually contained a2 structural information.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: cow (aka bos taurus) (aka bos taurus)
B: ovis dalli (dall's sheep) (aka ovis dalli)
C: cattle (aka bos)
D: ovis vignei (ovis orientalis vignei) (aka ovis vignei)
E: None of the above. | [E] |
<Instruct>: Given the context 'A minimum of 17 introns interrupt the 3 kb of ca2 genetic information interspersed as 18 exons over 17 kb of sheep DNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis dalli (dall's sheep) (aka ovis dalli)
B: suidae (pigs (aka suidae))
C: ovis ammon aries (aka ovis aries)
D: ovis
E: ovis vignei (ovis orientalis vignei) (aka ovis vignei)
F: None of the above. | [C] |
<Instruct>: Given the context 'Although the total number of introns present within the 60% 3' portion
of the a2 sheep gene was determined to be 17, variation in the precise number
TRANSRIPTlO
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis orientalis aries (aka ovis aries)
B: cow (aka bos taurus) (aka bos taurus)
C: ovis
D: cattle (aka bos)
E: suidae (pigs (aka suidae))
F: None of the above. | [A] |
<Instruct>: Given the context '5.5 50 4.5 4.0 3.5 3.0 2.5 2.0 1.5 1.0
KILOBASE
Fiue3 Organization of 60% of the 3' end of the sheep a2 collagen gene.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sheep]
<Options>: A: ovis aries vignei (aka ovis vignei)
B: ovis
C: cow (aka bos taurus) (aka bos taurus)
D: cattle (aka bos)
E: domestic sheep (aka ovis aries)
F: None of the above. | [E] |
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